##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##DRAGENCommandLine=<ID=dragen,Date="Wed Aug 09 18:19:12 PDT 2017",CommandLineOptions=" -r /gpfs/gwngs/data/ngshiseq/ngs-dragen-analysis/dragen-ref/hg19 --output-directory analysis_new/sample_38/ -1 01_trimmed/38_R1_001.fastq.gz -2 01_trimmed/38_R2_001.fastq.gz --output-file-prefix sample_38 --RGID=DRAGEN_RGID --RGSM=DRAGEN_RGSM --RGPL=ILLUMINA --enable-map-align-output=true --enable-bam-compression=true --enable-variant-caller=true --enable-duplicate-marking=true --vc-enable-depth-of-coverage=true --vc-target-bed AgilentHuman_AllExon_V6+UTR/S07604624/S07604624_Padded.bed --vc-depth-intervals-bed AgilentHuman_AllExon_V6+UTR/S07604624/S07604624_Regions.bed --vc-sample-name sample_38">
##DRAGENVersion=<ID=dragen,Version="SW: 01.011.099.02.03.02.32154, HW: 01.011.099">
##FILTER=<ID=DRAGENHardINDEL,Description="Set if true:QD < 2.0 || ReadPosRankSum < -20.0 || FS > 200.0">
##FILTER=<ID=DRAGENHardSNP,Description="Set if true:QD < 2.0 || MQ < 30.0 || FS > 60.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias.">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.7-0-gcfedb67,Date="Tue Aug 22 17:43:57 CEST 2017",Epoch=1503416637991,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/media/majdi/Transcend/Tools_Majdi/FASTA-data/ucsc.hg19/ucsc.hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=sample_100.hard-filtered.vcf), (RodBinding name=variant2 source=sample_38.hard-filtered.vcf), (RodBinding name=variant3 source=sample_39.hard-filtered.vcf), (RodBinding name=variant4 source=sample_40.hard-filtered.vcf), (RodBinding name=variant5 source=sample_41.hard-filtered.vcf), (RodBinding name=variant6 source=sample_42.hard-filtered.vcf), (RodBinding name=variant7 source=sample_43.hard-filtered.vcf), (RodBinding name=variant8 source=sample_44.hard-filtered.vcf), (RodBinding name=variant9 source=sample_45.hard-filtered.vcf), (RodBinding name=variant10 source=sample_46.hard-filtered.vcf), (RodBinding name=variant11 source=sample_47.hard-filtered.vcf), (RodBinding name=variant12 source=sample_48.hard-filtered.vcf), (RodBinding name=variant13 source=sample_49.hard-filtered.vcf), (RodBinding name=variant14 source=sample_50.hard-filtered.vcf), (RodBinding name=variant15 source=sample_51.hard-filtered.vcf), (RodBinding name=variant16 source=sample_53.hard-filtered.vcf), (RodBinding name=variant17 source=sample_54.hard-filtered.vcf), (RodBinding name=variant18 source=sample_55.hard-filtered.vcf), (RodBinding name=variant19 source=sample_56.hard-filtered.vcf), (RodBinding name=variant20 source=sample_57.hard-filtered.vcf), (RodBinding name=variant21 source=sample_59.hard-filtered.vcf), (RodBinding name=variant22 source=sample_60.hard-filtered.vcf), (RodBinding name=variant23 source=sample_61.hard-filtered.vcf), (RodBinding name=variant24 source=sample_62.hard-filtered.vcf), (RodBinding name=variant25 source=sample_63.hard-filtered.vcf), (RodBinding name=variant26 source=sample_64.hard-filtered.vcf), (RodBinding name=variant27 source=sample_66.hard-filtered.vcf), (RodBinding name=variant28 source=sample_67.hard-filtered.vcf), (RodBinding name=variant29 source=sample_68.hard-filtered.vcf), (RodBinding name=variant30 source=sample_69.hard-filtered.vcf), (RodBinding name=variant31 source=sample_70.hard-filtered.vcf), (RodBinding name=variant32 source=sample_71.hard-filtered.vcf), (RodBinding name=variant33 source=sample_72.hard-filtered.vcf), (RodBinding name=variant34 source=sample_73.hard-filtered.vcf), (RodBinding name=variant35 source=sample_74.hard-filtered.vcf), (RodBinding name=variant36 source=sample_91.hard-filtered.vcf), (RodBinding name=variant37 source=sample_92.hard-filtered.vcf), (RodBinding name=variant38 source=sample_93.hard-filtered.vcf), (RodBinding name=variant39 source=sample_94.hard-filtered.vcf), (RodBinding name=variant40 source=sample_95.hard-filtered.vcf), (RodBinding name=variant41 source=sample_96.hard-filtered.vcf), (RodBinding name=variant42 source=sample_97.hard-filtered.vcf), (RodBinding name=variant43 source=sample_98.hard-filtered.vcf), (RodBinding name=variant44 source=sample_99.hard-filtered.vcf)])] out=/media/majdi/Transcend/Analyse_Genepred_26072017/Analyse_Brice_2eme_lot/Analyse_SKAT/data/combined.vcf genotypemergeoption=UNIQUIFY filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=null printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=FractionInformativeReads,Number=1,Type=Float,Description="The fraction of informative reads out of the total reads">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
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##reference=file:///media/majdi/Transcend/Tools_Majdi/FASTA-data/ucsc.hg19/ucsc.hg19.fa
##bcftools_viewVersion=1.2+htslib-1.2.1
##bcftools_viewCommand=view -c 1 -s sample_51.variant15 sample.vcf
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample_51.variant15
chr1	14653	.	C	T	145.02	DRAGENHardSNP	AC=1;AF=0.574;AN=2;DP=565;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:144,0,201:6,3,5,2
chr1	14677	.	G	A	30.39	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:83:83,0,334:9,6,4,1
chr1	14907	.	A	G	1497.24	PASS	AC=1;AF=0.5;AN=2;DP=11127;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,114:236:99:2328,0,2573:57,65,55,59
chr1	14930	.	A	G	2107.21	PASS	AC=1;AF=0.5;AN=2;DP=11281;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,119:238:99:2482,0,2477:55,64,54,65
chr1	17697	.	G	C	126.83	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=136;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:124,0,295:0,13,0,7
chr1	137825	.	G	A	202.81	DRAGENHardSNP	AC=1;AF=0.548;AN=2;DP=674;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:171,0,219:7,5,7,3
chr1	137923	.	C	T	136.65	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=73;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:94:165,0,94:2,3,3,5
chr1	139213	.	A	G	725.1	DRAGENHardSNP	AC=1;AF=0.537;AN=2;DP=2258;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:55,31:86:99:1016,0,2641:33,22,13,18
chr1	139233	.	C	A	758.87	DRAGENHardSNP	AC=1;AF=0.537;AN=2;DP=2756;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:65,30:95:99:951,0,2863:40,25,16,14
chr1	139356	.	T	C	307.11	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=142;FS=5.241;FractionInformativeReads=0.993;MQ=24.43;MQRankSum=-0.965;QD=2.16;ReadPosRankSum=-1.458;SOR=1.294;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:111,30:141:99:335,0,2393:51,60,10,20
chr1	662029	.	G	A	125.14	DRAGENHardSNP	AC=1;AF=0.966;AN=2;DP=158;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:91:91,0,140:2,5,1,4
chr1	663097	.	G	C	715.42	DRAGENHardSNP	AC=1;AF=0.925;AN=2;DP=656;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:81:202,0,81:3,2,5,5
chr1	664397	.	C	T	72.44	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=198;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:48,10:58:93:93,0,1104:44,4,8,2
chr1	664443	.	G	T	203.56	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=298;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:138,31:169:99:232,0,3023:84,54,16,15
chr1	664486	.	TAG	T	661.28	PASS	AC=1;AF=0.5;AN=2;DP=327;set=variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:158,29:187:99:699,0,6241:77,81,13,16
chr1	752894	.	T	C	40.18	PASS	AC=1;AF=0.895;AN=2;DP=268;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:90:90,0,297:0,9,0,3
chr1	761957	.	A	AT	455.32	PASS	AC=1;AF=0.86;AN=2;DP=1319;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,20:76:99:576,0,2034:43,13,20,0
chr1	761958	.	C	T	705.06	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;set=variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:733,0,1392:38,5,25,8
chr1	762109	.	C	T	1214.85	PASS	AC=1;AF=0.5;AN=2;DP=612;FractionInformativeReads=1;set=variant15-filterInvariant25	GT:AD:DP:GQ:PL:SB	0/1:214,68:282:99:1243,0,5691:112,102,36,32
chr1	762273	.	G	A	1157.09	PASS	AC=1;AF=0.841;AN=2;DP=5222;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:104,118:222:99:2906,0,2520:46,58,41,77
chr1	762589	.	G	C	556.46	PASS	AC=1;AF=0.852;AN=2;DP=1967;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,44:59:99:1774,0,835:9,6,14,30
chr1	762592	.	C	G	556.46	PASS	AC=1;AF=0.852;AN=2;DP=1906;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,42:57:99:1711,0,863:9,6,11,31
chr1	762601	.	T	C	556.46	PASS	AC=1;AF=0.852;AN=2;DP=1732;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,38:54:99:1578,0,854:8,8,9,29
chr1	762632	.	T	A	137.73	PASS	AC=1;AF=0.852;AN=2;DP=1189;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:641,0,310:8,8,7,18
chr1	792263	.	A	G	276.79	PASS	AC=2;AF=0.898;AN=2;DP=1405;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1344,126,0:0,0,30,12
chr1	792480	.	C	T	3383.51	PASS	AC=2;AF=0.966;AN=2;DP=4598;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3819,391,0:0,0,59,72
chr1	804115	.	G	A	411.85	PASS	AC=2;AF=0.953;AN=2;DP=417;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:451,39,0:0,0,0,13
chr1	808631	.	G	A	199.97	PASS	AC=1;AF=0.793;AN=2;DP=1594;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:686,0,631:17,1,18,10
chr1	808922	.	G	A	4382.01	PASS	AC=2;AF=1;AN=2;DP=9647;FS=0;MQRankSum=-0.551;ReadPosRankSum=0.13;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,242:242:99:9213,729,0:0,0,148,94
chr1	808928	.	C	T	1200.84	PASS	AC=1;AF=0.793;AN=2;DP=9235;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,123:248:99:3100,0,3290:78,47,75,48
chr1	809319	.	C	T	623.84	PASS	AC=1;AF=0.5;AN=2;DP=1524;set=variant14-filterInvariant15-filterInvariant18-filterInvariant21-filterInvariant23-filterInvariant27-filterInvariant37	GT:AD:DP:GQ:PL:SB	0/1:255,43:298:99:288,0,6830:114,141,16,27
chr1	861008	.	G	C	590.34	PASS	AC=2;AF=0.943;AN=2;DP=890;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:913,75,0:0,0,19,6
chr1	861630	.	G	A	311.67	PASS	AC=2;AF=0.75;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:429,30,0:0,0,0,10
chr1	866319	.	G	A	719.26	PASS	AC=2;AF=1;AN=2;DP=1547;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1861,197,0:0,0,37,29
chr1	866511	.	C	CCCCT	484.32	PASS	AC=2;AF=0.763;AN=2;DP=1003;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:840,62,0:0,0,2,19
chr1	871334	.	G	T	646.63	PASS	AC=1;AF=0.784;AN=2;DP=1157;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:527,0,319:2,9,4,14
chr1	874950	.	T	TCCCTGGAGGACC	1520.32	PASS	AC=2;AF=0.711;AN=2;DP=2245;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2511,174,0:0,0,23,35
chr1	876499	.	A	G	1882.55	PASS	AC=2;AF=0.955;AN=2;DP=2368;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2355,240,0:0,0,40,40
chr1	877715	.	C	G	143.34	PASS	AC=2;AF=0.932;AN=2;DP=898;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:463,39,0:0,0,5,8
chr1	877831	.	T	C	439.32	PASS	AC=2;AF=1;AN=2;DP=1128;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1161,108,0:0,0,20,16
chr1	879676	.	G	A	1408.37	PASS	AC=2;AF=0.943;AN=2;DP=1667;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1961,144,0:0,0,8,40
chr1	879687	.	T	C	1236.05	PASS	AC=2;AF=0.955;AN=2;DP=1367;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1684,123,0:0,0,8,33
chr1	879911	.	G	A	280.58	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:309,0,625:14,11,6,7
chr1	880238	.	A	G	3393.3	PASS	AC=2;AF=0.955;AN=2;DP=4666;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4187,401,0:0,0,68,66
chr1	880639	.	TC	T	188.73	PASS	AC=1;AF=0.595;AN=2;DP=661;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant27-variant28-variant29-variant33-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:331,0,497:4,12,2,9
chr1	881627	.	G	A	2994.94	PASS	AC=1;AF=0.7;AN=2;DP=3979;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,70:142:99:1713,0,1954:44,28,42,28
chr1	881918	.	G	A	4344.35	PASS	AC=1;AF=0.5;AN=2;DP=1076;FractionInformativeReads=1;set=variant3-variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:182,186:368:99:4304,0,4428:88,94,91,95
chr1	882033	.	G	A	1559.92	PASS	AC=1;AF=0.583;AN=2;DP=1931;MQ=60;set=variant-variant4-variant5-variant6-variant9-variant11-variant15-variant19-variant20-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:57,59:116:99:1713,0,1541:18,39,13,46
chr1	883625	.	A	G	4609.89	PASS	AC=2;AF=1;AN=2;DP=6659;FS=0;MQRankSum=1.015;ReadPosRankSum=0.954;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5034,544,0:0,0,91,91
chr1	884091	.	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	3391.29	PASS	AC=2;AF=0.972;AN=2;DP=2678;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant-variant19	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:5436,412,0:0,0,35,108
chr1	886788	.	G	A	2211.72	PASS	AC=2;AF=0.872;AN=2;DP=3233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2754,233,0:0,0,17,61
chr1	886817	.	C	T,CATTTT	2829.07	PASS	AC=2,0;AF=0.852,0.102;AN=2;DP=2251;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:55:99:0,0,13,42
chr1	887560	.	A	C	1452.03	PASS	AC=2;AF=0.955;AN=2;DP=6243;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5576,521,0:0,0,91,83
chr1	887801	.	A	G	4434.03	PASS	AC=2;AF=0.966;AN=2;DP=8622;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:7865,693,0:0,0,134,97
chr1	888639	.	T	C	4516.36	PASS	AC=2;AF=0.966;AN=2;DP=12259;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,319:319:99:9524,956,0:0,0,168,151
chr1	888659	.	T	C	4816.6	PASS	AC=2;AF=0.966;AN=2;DP=12310;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,318:318:99:9323,952,0:0,0,157,161
chr1	889158	.	G	C	373.04	PASS	AC=2;AF=0.955;AN=2;DP=1550;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2119,147,0:0,0,32,15
chr1	889159	.	A	C	373.04	PASS	AC=2;AF=0.955;AN=2;DP=1561;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2119,147,0:0,0,33,16
chr1	889638	.	G	C	595.76	PASS	AC=2;AF=0.943;AN=2;DP=1606;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1448,129,0:0,0,11,32
chr1	891620	.	C	A	2007.58	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.051;QD=15.44;ReadPosRankSum=-1.223;SOR=0.758;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,80:130:99:2036,0,1153:22,28,34,46
chr1	892745	.	G	A	1918.45	PASS	AC=2;AF=0.966;AN=2;DP=3748;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4260,439,0:0,0,57,90
chr1	894573	.	G	A	2989.22	PASS	AC=2;AF=0.86;AN=2;DP=10960;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,300:300:99:9141,897,0:0,0,121,179
chr1	897325	.	G	C	2862.26	PASS	AC=2;AF=0.92;AN=2;DP=14802;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,349:350:99:10347,1037,0:0,1,154,195
chr1	897564	.	T	C	2909.93	PASS	AC=2;AF=0.932;AN=2;DP=11047;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,312:312:99:10026,936,0:0,0,153,159
chr1	898323	.	T	C	4219.65	PASS	AC=2;AF=0.977;AN=2;DP=5091;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4853,429,0:0,0,71,72
chr1	900285	.	C	T	474.01	PASS	AC=2;AF=0.92;AN=2;DP=2618;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2763,193,0:0,0,48,13
chr1	900286	.	A	G	1388.37	PASS	AC=2;AF=0.955;AN=2;DP=2675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2763,193,0:0,0,50,13
chr1	900505	.	G	C	1057.17	PASS	AC=1;AF=0.604;AN=2;DP=4033;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant33-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,120:223:99:2989,0,2679:44,59,54,66
chr1	900717	.	CTTAT	C	1579.23	PASS	AC=1;AF=0.706;AN=2;DP=914;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:586,0,854:7,15,5,11
chr1	900730	.	G	A	310.68	PASS	AC=2;AF=0.86;AN=2;DP=1053;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1433,108,0:0,0,12,24
chr1	900972	.	T	G	2315.01	PASS	AC=2;AF=0.955;AN=2;DP=3339;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2927,270,0:0,0,40,50
chr1	901023	.	T	C	1702.94	PASS	AC=2;AF=0.943;AN=2;DP=2741;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1914,176,0:0,0,23,36
chr1	901046	.	ACC	A	809.54	PASS	AC=1;AF=0.571;AN=2;DP=1184;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant27-variant28-variant29-variant33-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:832,0,1132:12,17,7,15
chr1	908823	.	G	A	1248.88	PASS	AC=1;AF=0.6;AN=2;DP=1153;set=variant-variant2-variant4-variant6-variant9-variant11-variant15-variant18-variant19-variant27-variant29-variant33-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1172,0,937:22,14,29,15
chr1	909238	.	G	C	62.99	PASS	AC=1;AF=0.782;AN=2;DP=1350;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:340,0,734:16,14,8,9
chr1	909309	.	T	C	817.09	PASS	AC=1;AF=0.639;AN=2;DP=1100;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant11-variant13-variant15-variant18-variant19-variant25-variant27-variant29-variant33-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:687,0,831:17,19,14,12
chr1	909768	.	A	G	6433.3	PASS	AC=2;AF=1;AN=2;DP=9051;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,216:216:99:6620,647,0:0,0,96,120
chr1	910394	.	C	T	2195.44	PASS	AC=1;AF=0.615;AN=2;DP=2163;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,54:92:99:1167,0,893:16,22,23,31
chr1	910438	.	A	G	1028.88	PASS	AC=2;AF=0.932;AN=2;DP=2341;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1695,161,0:0,0,23,31
chr1	910473	.	G	A	135.93	PASS	AC=1;AF=0.528;AN=2;DP=523;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant15-variant19-variant27-variant29-variant30-variant33-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:206,0,518:8,10,3,6
chr1	910903	.	T	C	1448.49	PASS	AC=2;AF=0.953;AN=2;DP=2492;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2107,186,0:0,0,30,32
chr1	910935	.	G	A	516.54	PASS	AC=1;AF=0.553;AN=2;DP=1112;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant15-variant19-variant27-variant29-variant30-variant33-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:702,0,699:15,12,13,15
chr1	911595	.	A	G	1888.2	PASS	AC=1;AF=0.782;AN=2;DP=6986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,113:247:99:2828,0,3428:64,70,55,58
chr1	911916	.	C	T	857.02	PASS	AC=1;AF=0.556;AN=2;DP=1959;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant15-variant19-variant27-variant29-variant30-variant33-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,66:117:99:1524,0,1237:25,26,30,36
chr1	912049	.	T	C	213.23	PASS	AC=1;AF=0.71;AN=2;DP=1203;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:720,0,429:4,13,10,18
chr1	914192	.	G	C	783.75	PASS	AC=2;AF=0.953;AN=2;DP=2098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1978,189,0:0,0,40,23
chr1	914333	.	C	G	1672.94	PASS	AC=1;AF=0.712;AN=2;DP=4428;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,94:178:99:2265,0,2123:51,33,50,44
chr1	914852	.	G	C	2797.3	PASS	AC=1;AF=0.712;AN=2;DP=6985;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,113:248:99:2790,0,3218:74,61,68,45
chr1	914876	.	T	C	8511.63	PASS	AC=2;AF=0.953;AN=2;DP=10722;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,305:305:99:10548,919,0:0,0,169,136
chr1	914940	.	T	C	3310.69	PASS	AC=1;AF=0.712;AN=2;DP=9728;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,189:346:99:4579,0,3369:72,85,96,93
chr1	915227	.	A	G	2530.8	PASS	AC=2;AF=0.953;AN=2;DP=6830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:6408,566,0:0,0,112,77
chr1	916549	.	A	G	815.56	PASS	AC=2;AF=0.817;AN=2;DP=3721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3602,326,0:0,0,46,63
chr1	916662	.	A	C	207.12	PASS	AC=1;AF=0.556;AN=2;DP=445;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant15-variant19-variant27-variant29-variant30-variant33-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,11:37:99:270,0,751:8,18,4,7
chr1	917315	.	G	A	777.75	PASS	AC=1;AF=0.556;AN=2;DP=854;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant15-variant19-variant27-variant29-variant30-variant33-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:567,0,867:22,12,16,8
chr1	917492	.	C	T	749.15	PASS	AC=1;AF=0.556;AN=2;DP=1314;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant15-variant19-variant27-variant29-variant30-variant33-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,55:93:99:1444,0,1006:13,25,23,32
chr1	935222	.	C	A	762.28	PASS	AC=1;AF=0.682;AN=2;DP=2685;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,48:86:99:1300,0,1058:9,29,14,34
chr1	935459	.	A	G	693.98	PASS	AC=2;AF=0.738;AN=2;DP=1591;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:884,87,0:0,0,18,11
chr1	935492	.	G	T	799.7	PASS	AC=2;AF=0.738;AN=2;DP=1755;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1331,123,0:0,0,23,18
chr1	948692	.	G	A	732.73	PASS	AC=2;AF=0.929;AN=2;DP=881;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:787,69,0:0,0,16,7
chr1	948846	.	T	TA	4513.25	PASS	AC=2;AF=0.93;AN=2;DP=4122;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:6675,457,0:0,0,89,63
chr1	948870	.	C	G	4658.54	PASS	AC=2;AF=0.94;AN=2;DP=4725;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:6967,499,0:0,0,94,69
chr1	948921	.	T	C	4151.07	PASS	AC=2;AF=0.94;AN=2;DP=5417;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5744,557,0:0,0,97,89
chr1	949608	.	G	A	2587.39	PASS	AC=1;AF=0.648;AN=2;DP=8690;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:228,172:400:99:4000,0,5842:106,122,76,96
chr1	949654	.	A	G	6919.18	PASS	AC=2;AF=0.929;AN=2;DP=12519;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,370:372:99:11500,1063,0:1,1,168,202
chr1	949925	.	C	T	1683.14	PASS	AC=2;AF=0.94;AN=2;DP=1781;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1933,174,0:0,0,17,41
chr1	976514	.	C	A	552.42	PASS	AC=1;AF=0.908;AN=2;DP=834;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:324,0,317:9,1,10,1
chr1	977203	.	G	C	318.69	PASS	AC=1;AF=0.8;AN=2;DP=57;FractionInformativeReads=1;set=variant2-variant4-variant9-variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:167,0,313:8,2,6,1
chr1	977330	.	T	C	1812.74	PASS	AC=1;AF=0.907;AN=2;DP=3375;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,60:129:99:1379,0,1770:46,23,35,25
chr1	977570	.	G	A	3452	PASS	AC=1;AF=0.872;AN=2;DP=3594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1415,0,1487:16,38,18,33
chr1	978603	.	CCT	C	1953.61	PASS	AC=1;AF=0.625;AN=2;DP=5268;MQ=60;set=variant-variant2-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:106,99:205:99:3762,0,4364:59,47,60,39
chr1	980460	.	G	A	1079.07	PASS	AC=1;AF=0.919;AN=2;DP=1636;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:443,0,743:17,13,13,5
chr1	981087	.	A	G	10819.3	PASS	AC=1;AF=0.895;AN=2;DP=16227;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:251,213:464:99:5639,0,6352:134,117,115,98
chr1	981931	.	A	G	3749.51	PASS	AC=1;AF=0.869;AN=2;DP=5620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,82:155:99:2451,0,2207:37,36,52,30
chr1	982941	.	T	C	7668.35	PASS	AC=1;AF=0.86;AN=2;DP=11826;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,139:294:99:3577,0,3765:77,78,71,68
chr1	982994	.	T	C	7388.93	PASS	AC=1;AF=0.86;AN=2;DP=11974;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,146:301:99:3630,0,3996:72,83,69,77
chr1	983804	.	GGGT	G	71.69	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=45;FS=21.852;FractionInformativeReads=0.978;MQ=60;MQRankSum=-1.658;QD=1.59;ReadPosRankSum=-1.932;SOR=4.404;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:36,8:44:99:109,0,4787:19,17,0,8
chr1	984147	.	CAAAAAAAAAAA	C,CAAAAAAAAAA,CAAAAAA	457.58	PASS	AC=1,0,0;AF=0.554,0.041,0.014;AN=2;DP=769;MQ=60;set=variant-variant2-filterInvariant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:12:99:3,0,6,3
chr1	984171	.	CAG	C	496.56	PASS	AC=1;AF=0.618;AN=2;DP=874;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:483,0,505:5,1,7,5
chr1	984302	.	T	C	572.85	PASS	AC=1;AF=0.614;AN=2;DP=1379;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:556,0,488:11,10,10,13
chr1	985266	.	C	T	1809.38	PASS	AC=1;AF=0.6;AN=2;DP=7784;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,109:273:99:2416,0,3978:86,78,59,50
chr1	985443	.	AG	A	455.27	PASS	AC=1;AF=0.7;AN=2;DP=725;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-filterInvariant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,5:26:73:73,0,701:8,13,2,3
chr1	985446	.	G	T	777.49	PASS	AC=1;AF=0.611;AN=2;DP=699;MQ=60;set=variant3-variant5-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:406,0,352:2,12,8,8
chr1	985449	.	G	A	473.22	PASS	AC=1;AF=0.672;AN=2;DP=707;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:511,0,104:2,6,6,10
chr1	985450	.	G	A	463.86	PASS	AC=1;AF=0.694;AN=2;DP=620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-filterInvariant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,5:24:78:78,0,706:6,13,2,3
chr1	986443	.	C	T	2871.26	PASS	AC=1;AF=0.857;AN=2;DP=5823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,87:156:99:2230,0,1751:32,37,46,41
chr1	987200	.	C	T	3285.53	PASS	AC=1;AF=0.857;AN=2;DP=4407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,50:110:99:1534,0,1883:30,30,23,27
chr1	988932	.	G	C	2443.4	PASS	AC=1;AF=0.857;AN=2;DP=2819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:860,0,891:14,21,16,21
chr1	990280	.	C	T	868.79	PASS	AC=2;AF=0.671;AN=2;DP=2088;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2254,227,0:0,0,39,37
chr1	990517	.	C	T	4780.66	PASS	AC=1;AF=0.919;AN=2;DP=6138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,102:196:99:2330,0,2073:49,45,53,49
chr1	990773	.	C	T	2732.49	PASS	AC=1;AF=0.905;AN=2;DP=4033;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,55:128:99:1209,0,1796:37,36,27,28
chr1	990806	.	G	A	2966.61	PASS	AC=1;AF=0.905;AN=2;DP=4009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1158,0,1541:30,31,27,25
chr1	990984	.	G	A	4622.06	PASS	AC=1;AF=0.919;AN=2;DP=6560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,96:175:99:2346,0,1862:34,45,45,51
chr1	1007203	.	A	G	1905.14	PASS	AC=1;AF=0.841;AN=2;DP=1876;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:895,0,903:23,2,23,3
chr1	1007432	.	G	A	2492.6	PASS	AC=1;AF=0.635;AN=2;DP=8614;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,143:251:99:3523,0,2585:50,58,71,72
chr1	1017170	.	C	G	247.35	PASS	AC=1;AF=0.657;AN=2;DP=1093;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:521,0,530:13,8,14,7
chr1	1017197	.	C	T	440.11	PASS	AC=1;AF=0.643;AN=2;DP=1551;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:782,0,593:11,11,18,9
chr1	1017341	.	G	T	3132.43	PASS	AC=1;AF=0.838;AN=2;DP=3788;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,72:126:99:1822,0,1159:28,26,38,34
chr1	1018144	.	T	C	3254.98	PASS	AC=1;AF=0.643;AN=2;DP=9092;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:156,139:295:99:3373,0,3953:65,91,60,79
chr1	1019175	.	C	G	2185.37	PASS	AC=1;AF=0.838;AN=2;DP=2769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,28:117:99:885,0,5212:54,35,18,10
chr1	1019180	.	T	C	703.91	PASS	AC=1;AF=0.622;AN=2;DP=2623;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,29:119:99:889,0,5241:55,35,19,10
chr1	1020406	.	T	C	296.28	PASS	AC=1;AF=0.875;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:316,0,257:7,2,10,0
chr1	1021415	.	A	G	1461.02	PASS	AC=1;AF=0.885;AN=2;DP=2498;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:1115,0,866:9,24,14,28
chr1	1026707	.	C	A	1062.94	PASS	AC=1;AF=0.645;AN=2;DP=4380;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,79:145:99:1765,0,1499:39,27,44,35
chr1	1026801	.	T	A	2434.16	PASS	AC=1;AF=0.686;AN=2;DP=6007;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,103:183:99:2608,0,1800:38,42,54,49
chr1	1109104	.	G	T	166.66	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant23	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:275,0,529:10,7,7,3
chr1	1109195	.	A	G	510.74	PASS	AC=1;AF=0.5;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:423,0,547:12,11,12,8
chr1	1109252	.	A	G	1162.79	PASS	AC=1;AF=0.563;AN=2;DP=1257;MQ=60;set=variant-variant2-variant7-variant8-variant10-variant11-variant13-variant15-variant18-variant19-variant20-variant23-variant26-variant27-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:678,0,973:21,20,15,18
chr1	1109311	.	G	A	1611.8	PASS	AC=1;AF=0.5;AN=2;DP=348;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:995,0,1491:19,20,11,16
chr1	1109315	.	C	G	1672.18	PASS	AC=1;AF=0.5;AN=2;DP=346;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:1001,0,1447:16,20,11,16
chr1	1109376	.	G	A	419.42	PASS	AC=1;AF=0.5;AN=2;DP=223;MQ=60;set=variant10-variant15-variant18-variant20-variant23-variant25	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:469,0,429:7,9,7,9
chr1	1109653	.	G	A	400.04	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:541,0,648:16,10,14,8
chr1	1109903	.	C	T	167.84	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:301,0,472:4,12,4,9
chr1	1109953	.	G	A	94.73	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant20	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:141,0,440:3,6,1,3
chr1	1109958	.	A	G	94.73	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant20	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:144,0,407:3,4,1,3
chr1	1110987	.	T	TC	2335.57	PASS	AC=1;AF=0.5;AN=2;DP=581;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:50,53:103:99:2085,0,2360:27,23,33,20
chr1	1110991	.	G	C	2341.58	PASS	AC=1;AF=0.5;AN=2;DP=580;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:53,54:107:99:2079,0,2428:30,23,33,21
chr1	1111212	.	G	GAGAGGCTGCCGCTGTGCCGGTGGAGAGGCTGCCGCCGTGCAGGTGGAA	1330.96	PASS	AC=1;AF=0.5;AN=2;DP=417;set=variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:42,28:70:99:1368,0,1785:22,20,9,19
chr1	1111477	.	A	G	245	PASS	AC=1;AF=0.5;AN=2;DP=321;set=variant10-variant15-filterInvariant18-variant20	GT:AD:DP:GQ:PL:SB	0/1:56,17:73:99:474,0,2744:23,33,8,9
chr1	1111493	.	G	A	111.48	PASS	AC=1;AF=0.5;AN=2;DP=372;FractionInformativeReads=1;set=filterInvariant10-variant15-filterInvariant18-variant20	GT:AD:DP:GQ:PL:SB	0/1:59,12:71:99:349,0,2728:27,32,6,6
chr1	1114668	.	G	A	902.88	PASS	AC=1;AF=0.5;AN=2;DP=775;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant20-variant23	GT:AD:DP:GQ:PL:SB	0/1:94,93:187:99:2076,0,2168:52,42,51,42
chr1	1116311	.	A	G	148.51	PASS	AC=1;AF=0.694;AN=2;DP=127;FS=0;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant13-variant14-variant15-variant19-variant20-variant23-variant26-variant33-variant34-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:67:67,0,106:1,4,0,2
chr1	1117398	.	A	G	381.22	PASS	AC=1;AF=0.625;AN=2;DP=467;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant23-variant26-variant27-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:180,0,393:4,11,1,7
chr1	1118212	.	T	C	1032.79	PASS	AC=1;AF=0.568;AN=2;DP=2081;MQ=60;set=variant-variant3-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant20-variant23-variant26-variant27-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,69:143:99:1532,0,1699:46,28,39,30
chr1	1120307	.	G	A	495.11	PASS	AC=1;AF=0.611;AN=2;DP=1403;set=variant-variant2-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant23-variant24-variant26-variant31-variant33-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,59:97:99:1632,0,910:23,15,40,19
chr1	1120431	.	G	A,C	1539.7	PASS	AC=0,1;AF=0.429,0.071;AN=2;DP=1546;MQ=60;set=variant-variant10-variant15-variant22-variant25-variant28-variant42	GT:DP:GQ:SB	0/2:271:99:72,64,72,63
chr1	1121358	.	A	C	52.74	PASS	AC=1;AF=0.625;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant15-variant18	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,113:1,2,1,1
chr1	1133077	.	A	G	337.18	PASS	AC=1;AF=0.595;AN=2;DP=1102;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant23-variant24-variant26-variant31-variant33-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:676,0,884:20,15,16,7
chr1	1133273	.	T	C	2712.9	PASS	AC=1;AF=0.6;AN=2;DP=3744;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant23-variant24-variant26-variant31-variant33-variant34-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:122,103:225:99:2303,0,2804:63,59,48,55
chr1	1147243	.	A	C	1283.02	PASS	AC=1;AF=0.5;AN=2;DP=502;MQ=60;set=variant-variant15-variant18-variant20-variant23-variant27	GT:AD:DP:GQ:PL:SB	0/1:61,60:121:99:1661,0,1514:29,32,31,29
chr1	1147297	.	G	A	1414.39	PASS	AC=1;AF=0.5;AN=2;DP=540;MQ=60;set=variant-variant15-variant18-variant20-variant23-variant27	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1842,0,1737:34,33,39,32
chr1	1147422	.	C	T	3190.76	PASS	AC=1;AF=0.524;AN=2;DP=4746;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant26-variant28-variant31-variant34-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:151,139:290:99:3299,0,3690:77,74,73,66
chr1	1148445	.	G	A	2205.58	PASS	AC=1;AF=0.5;AN=2;DP=153;FS=0.602;FractionInformativeReads=1;MQ=60;MQRankSum=1.111;QD=14.42;ReadPosRankSum=0.912;SOR=0.596;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:68,85:153:99:2234,0,1734:37,31,44,41
chr1	1152631	.	C	A	1998.68	PASS	AC=1;AF=0.5;AN=2;DP=1563;MQ=60;set=variant14-variant15-variant16-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:115,95:210:99:2115,0,2627:55,60,46,49
chr1	1153113	.	G	A	3291.63	PASS	AC=1;AF=0.556;AN=2;DP=2142;MQ=60;set=variant-variant14-variant15-variant16-variant18-variant20-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:99,143:242:99:3461,0,2348:40,59,63,80
chr1	1156131	.	T	C	1820.91	PASS	AC=2;AF=0.545;AN=2;DP=1509;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant14-variant15-variant19-variant22-variant23-variant28-variant33-variant34-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4638,458,0:0,0,73,80
chr1	1158534	.	G	GAC	762.4	PASS	AC=1;AF=0.5;AN=2;DP=256;set=variant15-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:800,0,604:16,2,20,3
chr1	1158562	.	AAC	A	1230.76	PASS	AC=1;AF=0.5;AN=2;DP=410;MQ=60;set=variant15-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:1268,0,1590:29,14,25,10
chr1	1158631	.	A	G	3973.15	PASS	AC=2;AF=0.869;AN=2;DP=5952;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5492,520,0:0,0,96,78
chr1	1159485	.	C	T	327.04	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:355,0,590:2,15,3,9
chr1	1163804	.	C	T	1785.41	PASS	AC=1;AF=0.545;AN=2;DP=1667;MQ=60;set=variant8-variant11-variant15-variant16-variant18-variant20-variant23-variant26-variant27-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:91,88:179:99:2004,0,2151:54,37,49,39
chr1	1163811	.	G	GGACA	3841.54	PASS	AC=1;AF=0.5;AN=2;DP=605;MQ=60;set=variant15-variant22-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:97,97:194:99:3879,0,3699:55,42,59,38
chr1	1167796	.	C	T	299.8	PASS	AC=1;AF=0.563;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,13:17:99:328,0,107:2,2,8,5
chr1	1177918	.	CT	C	4163.26	PASS	AC=1;AF=0.5;AN=2;DP=940;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:136,127:263:99:4201,0,4496:78,58,79,48
chr1	1178245	.	C	T	2858.61	PASS	AC=1;AF=0.5;AN=2;DP=826;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:105,121:226:99:2887,0,2845:57,48,63,58
chr1	1178482	.	A	G	2176.53	PASS	AC=1;AF=0.5;AN=2;DP=1262;MQ=60;set=variant15-variant23-variant27-variant31-variant33	GT:AD:DP:GQ:PL:SB	0/1:164,102:266:99:2205,0,4045:59,105,37,65
chr1	1178925	.	G	A	1956.99	PASS	AC=1;AF=0.5;AN=2;DP=662;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:99,83:182:99:1985,0,2294:42,57,32,51
chr1	1179030	.	G	A	388.24	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:416,0,750:8,15,1,12
chr1	1179309	.	G	A	812.04	PASS	AC=1;AF=0.5;AN=2;DP=276;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:37,41:78:99:840,0,841:21,16,21,20
chr1	1179800	.	G	A	1535.2	PASS	AC=1;AF=0.5;AN=2;DP=539;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:62,65:127:99:1563,0,1586:26,36,33,32
chr1	1179983	.	G	A	346.54	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:375,0,507:5,11,2,10
chr1	1181751	.	T	C	230.56	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:259,0,240:6,4,7,4
chr1	1196863	.	T	C	680.56	PASS	AC=2;AF=1;AN=2;DP=1591;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1167,96,0:0,0,4,28
chr1	1223465	.	GC	G	279.8	PASS	AC=1;AF=0.5;AN=2;DP=58;MQ=60;set=variant15-variant23-variant33	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:317,0,433:5,9,4,7
chr1	1225517	.	T	C	50.83	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=57.57;MQRankSum=1.371;QD=2.03;ReadPosRankSum=-2.557;SOR=0.569;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:21,4:25:79:79,0,660:15,6,3,1
chr1	1225641	.	C	A	2307.28	PASS	AC=1;AF=0.5;AN=2;DP=851;MQ=60;set=variant11-variant15-variant23-variant26-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,81:156:99:1913,0,2113:39,36,41,40
chr1	1226221	.	A	G	556.27	PASS	AC=1;AF=0.5;AN=2;DP=563;MQ=60;set=variant6-variant8-variant11-variant13-variant15-variant23-variant26-variant27-variant28-variant29-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:556,0,869:10,17,11,9
chr1	1226348	.	C	G	756.77	PASS	AC=1;AF=0.5;AN=2;DP=1171;MQ=60;set=variant8-variant11-variant13-variant14-variant15-variant23-variant24-variant26-variant27-variant28-variant31-variant33-variant34-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1161,0,1390:25,29,26,23
chr1	1226539	.	C	T	1113.14	PASS	AC=1;AF=0.5;AN=2;DP=204;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant15	GT:AD:DP:GQ:PL:SB	0/1:43,61:104:99:1585,0,928:19,24,27,34
chr1	1226690	.	C	T	1232.8	PASS	AC=1;AF=0.5;AN=2;DP=277;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1261,0,1171:24,22,28,23
chr1	1227664	.	TTGAG	T	115.64	PASS	AC=1;AF=0.5;AN=2;DP=131;MQ=60;set=variant14-variant15-variant23-variant24-variant27-variant31-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:345,0,616:7,4,7,2
chr1	1229111	.	A	ACGCCCCTGCCCTGGAGGCCC,ACGACCCTGCCCTGGAGGCCC	596.42	PASS	AC=2,0;AF=0.929,0.014;AN=2;DP=1886;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43	GT:DP:GQ:SB	1/1:17:28:3,0,5,9
chr1	1229680	.	G	T	6334.85	PASS	AC=2;AF=0.977;AN=2;DP=8725;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,288:288:99:9274,863,0:0,0,125,163
chr1	1237604	.	T	C	106.77	PASS	AC=2;AF=0.977;AN=2;DP=522;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:452,39,0:0,0,4,9
chr1	1238492	.	G	A	1180.32	PASS	AC=1;AF=0.5;AN=2;DP=395;MQ=60;set=variant15-variant23-variant25-variant27-variant28-variant33	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:1209,0,1225:25,24,24,25
chr1	1239339	.	T	G	3655.98	PASS	AC=2;AF=0.932;AN=2;DP=4131;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3668,295,0:0,0,80,18
chr1	1242707	.	A	G	1082.04	PASS	AC=2;AF=0.886;AN=2;DP=3710;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3568,311,0:0,0,34,70
chr1	1243896	.	C	T	151.77	PASS	AC=2;AF=0.9;AN=2;DP=334;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:349,24,0:0,0,8,0
chr1	1243929	.	G	T	139.03	PASS	AC=1;AF=0.868;AN=2;DP=385;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:10:180,0,10:2,1,6,1
chr1	1243933	.	GA	G	84.54	PASS	AC=1;AF=0.714;AN=2;DP=57;FS=0;MQ=60;set=variant5-variant13-variant14-variant15-variant21-variant28-variant30	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:10:180,0,10:2,1,6,1
chr1	1245368	.	G	A	1846.94	PASS	AC=1;AF=0.814;AN=2;DP=2804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:994,0,1158:12,32,10,26
chr1	1246004	.	A	G	4796.48	PASS	AC=2;AF=1;AN=2;DP=6127;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:5184,488,0:0,0,95,68
chr1	1247494	.	T	C	1685.79	PASS	AC=1;AF=0.837;AN=2;DP=3035;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,37:103:99:825,0,1823:30,36,14,23
chr1	1247578	.	T	TGGGGGGGGGG,TGGGGG,TGGGG,TGG,TGGGGGGGGG	263.17	PASS	AC=0,0,0,1,0;AF=0.032,0.21,0.403,0.161,0.016;AN=2;DP=690;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:18:11:2,0,16,0
chr1	1249187	.	G	A	9794.83	PASS	AC=1;AF=0.814;AN=2;DP=15887;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:214,205:419:99:5220,0,5544:105,109,97,108
chr1	1254136	.	G	A	1474.25	PASS	AC=2;AF=0.92;AN=2;DP=2435;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1882,168,0:0,0,42,14
chr1	1254436	.	A	G	6032.9	PASS	AC=2;AF=1;AN=2;DP=7323;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,194:195:99:8876,561,0:1,0,104,90
chr1	1254443	.	G	A	6097.61	PASS	AC=2;AF=0.909;AN=2;DP=7517;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:9105,617,0:0,0,112,92
chr1	1254841	.	C	G	3017.72	PASS	AC=2;AF=0.909;AN=2;DP=6951;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6594,620,0:0,0,79,128
chr1	1257282	.	A	C	1386.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=13223;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:256,109:365:99:1811,0,4373:46,210,106,3
chr1	1260168	.	C	A	419.87	PASS	AC=2;AF=0.919;AN=2;DP=754;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,9:10:25:306,25,0:0,1,5,4
chr1	1262591	.	C	T	5793.43	PASS	AC=2;AF=0.92;AN=2;DP=11197;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,330:331:99:9437,977,0:0,1,193,137
chr1	1262966	.	C	T	5368.34	PASS	AC=2;AF=0.92;AN=2;DP=8392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,214:215:99:6618,633,0:0,1,122,92
chr1	1263144	.	G	A	5057.15	PASS	AC=2;AF=0.943;AN=2;DP=8619;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:7000,674,0:0,0,113,113
chr1	1263362	.	G	A	5152.24	PASS	AC=2;AF=0.919;AN=2;DP=7147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,216:216:99:6867,646,0:0,0,116,100
chr1	1263457	.	T	C	6336.73	PASS	AC=2;AF=1;AN=2;DP=8452;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,256:256:99:7666,767,0:0,0,131,125
chr1	1268847	.	T	G	6254.9	PASS	AC=2;AF=1;AN=2;DP=13507;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,356:356:99:10526,1065,0:0,0,169,187
chr1	1269554	.	T	C	7467.9	PASS	AC=2;AF=1;AN=2;DP=11872;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,313:313:99:9713,937,0:0,0,169,144
chr1	1270329	.	A	G	3230.16	PASS	AC=2;AF=1;AN=2;DP=3749;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.572;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2927,258,0:0,0,53,33
chr1	1270359	.	T	C	3083.73	PASS	AC=2;AF=1;AN=2;DP=3908;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3197,267,0:0,0,61,28
chr1	1271175	.	A	G	1988.59	PASS	AC=2;AF=1;AN=2;DP=2459;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2125,186,0:0,0,27,35
chr1	1271924	.	G	A	335.55	PASS	AC=1;AF=0.5;AN=2;DP=49;FractionInformativeReads=1;MQ=60;set=variant15-variant23	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:364,0,408:2,11,5,8
chr1	1273116	.	A	G	5293.62	PASS	AC=2;AF=0.932;AN=2;DP=8387;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:6830,686,0:0,0,97,132
chr1	1273278	.	A	G	827.3	PASS	AC=1;AF=0.875;AN=2;DP=1356;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:385,0,767:20,4,16,6
chr1	1275264	.	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG,ACAGCCGCATGTCCCCCAGCAGCCCCCGCAGACCCACCCG	1606.88	PASS	AC=2,0;AF=0.966,0.017;AN=2;DP=1771;FS=0;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant2-variant36	GT:DP:GQ:SB	1/1:29:69:0,0,1,28
chr1	1276930	.	GCA	G	1430.05	PASS	AC=1;AF=0.5;AN=2;DP=507;MQ=60;set=variant15-variant23-variant25-variant27-variant28-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1467,0,1706:33,16,31,11
chr1	1276973	.	G	GACAC	1592.74	PASS	AC=2;AF=1;AN=2;DP=5299;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:6562,442,0:0,0,87,58
chr1	1277533	.	T	C	3970.84	PASS	AC=2;AF=1;AN=2;DP=5089;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4659,458,0:0,0,61,92
chr1	1278237	.	T	C	1888.86	PASS	AC=2;AF=1;AN=2;DP=2884;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2321,200,0:0,0,18,49
chr1	1284490	.	G	A	2303.77	PASS	AC=2;AF=0.943;AN=2;DP=3211;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2869,290,0:0,0,30,68
chr1	1287973	.	G	A	413.5	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=1.748;FractionInformativeReads=1;MQ=60;MQRankSum=-1.207;QD=17.23;ReadPosRankSum=0.508;SOR=0.387;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:442,0,147:5,2,10,7
chr1	1288345	.	A	G	2145.3	PASS	AC=2;AF=1;AN=2;DP=2832;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2653,246,0:0,0,51,31
chr1	1288471	.	C	T	4023.57	PASS	AC=2;AF=0.932;AN=2;DP=5852;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4852,446,0:0,0,87,62
chr1	1288583	.	C	G	5048.79	PASS	AC=2;AF=0.955;AN=2;DP=8846;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,230:230:99:7264,687,0:0,0,125,105
chr1	1288823	.	A	G	1872.67	PASS	AC=2;AF=0.943;AN=2;DP=2808;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2865,261,0:0,0,34,53
chr1	1289367	.	CTG	C	5486.53	PASS	AC=2;AF=0.955;AN=2;DP=6386;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:8257,557,0:0,0,96,89
chr1	1289911	.	G	A	3232.35	PASS	AC=2;AF=0.955;AN=2;DP=4335;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,132:133:99:3945,384,0:0,1,46,86
chr1	1291159	.	GA	G	367.86	PASS	AC=2;AF=1;AN=2;DP=368;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:682,57,0:0,0,9,10
chr1	1293764	.	G	C	3070.36	PASS	AC=1;AF=0.849;AN=2;DP=3582;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,47:117:99:1086,0,1673:42,28,29,18
chr1	1296691	.	C	G	4222.45	PASS	AC=2;AF=1;AN=2;DP=9751;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:7454,716,0:0,0,113,126
chr1	1296818	.	C	G	5665.68	PASS	AC=2;AF=1;AN=2;DP=7155;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5874,556,0:0,0,90,96
chr1	1297059	.	G	A	2773.48	PASS	AC=1;AF=0.886;AN=2;DP=4188;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,65:137:99:1655,0,2755:34,38,28,37
chr1	1297065	.	C	T	633.82	PASS	AC=1;AF=0.5;AN=2;DP=842;MQ=60;set=variant14-variant15-variant23-variant25-variant27-variant28-variant33-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,68:132:99:1626,0,2431:28,36,32,36
chr1	1297213	.	G	C	1020.73	PASS	AC=2;AF=0.953;AN=2;DP=1278;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1417,99,0:0,0,8,25
chr1	1297216	.	A	G	1020.73	PASS	AC=2;AF=0.977;AN=2;DP=1229;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:96:1383,96,0:0,0,7,23
chr1	1308982	.	A	G	419.64	PASS	AC=2;AF=1;AN=2;DP=754;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:926,87,0:0,0,16,13
chr1	1309885	.	A	G	1053.84	PASS	AC=1;AF=0.5;AN=2;DP=717;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant23-variant25-variant27-variant28-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,59:106:99:1564,0,1258:24,23,34,25
chr1	1310074	.	C	G	4492.16	PASS	AC=2;AF=0.953;AN=2;DP=7252;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:6000,568,0:0,0,99,91
chr1	1310668	.	A	C	4234.61	PASS	AC=2;AF=0.953;AN=2;DP=6175;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5520,528,0:0,0,89,87
chr1	1310924	.	T	C	1241.86	PASS	AC=2;AF=1;AN=2;DP=1794;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1985,165,0:0,0,10,45
chr1	1310975	.	C	T	481.88	PASS	AC=2;AF=0.953;AN=2;DP=650;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:875,69,0:0,0,3,20
chr1	1323078	.	A	G	1444.77	PASS	AC=1;AF=0.849;AN=2;DP=2565;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,29:72:99:837,0,1018:20,23,8,21
chr1	1323143	.	CCT	C	1128.68	PASS	AC=1;AF=0.849;AN=2;DP=1925;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,26:63:99:960,0,1466:19,18,14,12
chr1	1323945	.	GTC	G,GTCTC	536.31	PASS	AC=1,0;AF=0.795,0.045;AN=2;DP=2179;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:51:99:17,17,8,9
chr1	1323963	.	CTA	C	507.58	PASS	AC=1;AF=0.5;AN=2;DP=368;MQ=60;set=variant14-variant15-variant19-variant23-variant27-variant6-variant33	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:628,0,448:11,10,16,12
chr1	1330726	.	A	G	893.46	PASS	AC=1;AF=0.536;AN=2;DP=578;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant14-variant15-variant23-variant25-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:808,0,610:16,8,20,13
chr1	1333598	.	C	A	1900.23	PASS	AC=1;AF=0.5;AN=2;DP=1038;MQ=60;set=variant15-variant23-variant25-variant27-variant28-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:97,81:178:99:1928,0,2398:53,44,44,37
chr1	1335790	.	A	G	2153.31	PASS	AC=1;AF=0.536;AN=2;DP=1968;MQ=60;set=variant8-variant11-variant14-variant15-variant23-variant25-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:108,88:196:99:2389,0,3173:58,50,49,39
chr1	1336136	.	GGA	G	4133.24	PASS	AC=1;AF=0.5;AN=2;DP=1330;MQ=60;set=variant15-variant23-variant25-variant27-variant28-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:132,109:241:99:4171,0,5408:62,70,50,59
chr1	1337334	.	G	T	753.66	PASS	AC=1;AF=0.5;AN=2;DP=326;MQ=60;set=variant15-variant23-variant25-variant27-variant28-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:782,0,1041:18,15,12,16
chr1	1342612	.	G	C	2414.7	PASS	AC=1;AF=0.5;AN=2;DP=2560;MQ=60;set=variant5-variant14-variant15-variant21-variant23-variant25-variant27-variant28-variant33-variant34-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:159,114:273:99:2522,0,4116:67,92,52,62
chr1	1342657	.	T	C	1856.32	PASS	AC=1;AF=0.5;AN=2;DP=184;FS=0.555;FractionInformativeReads=1;MQ=60;MQRankSum=4.488;QD=10.09;ReadPosRankSum=1.591;SOR=0.611;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:105,79:184:99:1885,0,2580:43,62,34,45
chr1	1361633	.	G	A	884.14	PASS	AC=1;AF=0.5;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant23-variant27-variant28-variant33-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:912,0,1679:14,20,7,19
chr1	1361641	.	C	T	471.25	PASS	AC=1;AF=0.577;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:829,0,1637:12,19,6,17
chr1	1374834	.	A	G	535.53	PASS	AC=1;AF=0.536;AN=2;DP=786;MQ=60;set=variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:996,0,779:18,17,16,22
chr1	1375185	.	G	C	81.24	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant23-variant27-variant28-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:109,0,118:3,3,2,2
chr1	1375810	.	C	G	1548.31	PASS	AC=1;AF=0.536;AN=2;DP=1517;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,67:126:99:1637,0,1381:25,34,31,36
chr1	1376214	.	C	G	983.49	PASS	AC=1;AF=0.533;AN=2;DP=966;MQ=60;set=variant7-variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:616,0,1008:19,19,17,12
chr1	1376567	.	A	G	1087.51	PASS	AC=1;AF=0.538;AN=2;DP=1927;MQ=60;set=variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,90:203:99:2068,0,2692:59,54,46,44
chr1	1378173	.	G	A	837.17	PASS	AC=1;AF=0.5;AN=2;DP=332;MQ=60;set=variant15-variant17-variant23-variant27-variant28-variant33	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:865,0,740:12,19,18,20
chr1	1387667	.	C	G	14727.4	PASS	AC=2;AF=1;AN=2;DP=24153;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,660:661:99:19937,1969,0:0,1,329,331
chr1	1395449	.	ATTT	ATT,AT,ATTTT,A	36.35	PASS	AC=1,0,0,0;AF=0.379,0.061,0.045,0.03;AN=2;DP=1249;set=filterInvariant-variant2-filterInvariant3-variant5-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-filterInvariant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:35:99:10,14,4,7
chr1	1417696	.	C	G	195.72	PASS	AC=1;AF=0.756;AN=2;DP=3051;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,43:126:99:1084,0,2578:38,45,22,21
chr1	1418531	.	G	A	64.78	PASS	AC=2;AF=1;AN=2;DP=176;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:144,15,0:0,0,2,3
chr1	1460793	.	CTT	CT,CTTT,C	116.63	PASS	AC=1,0,0;AF=0.37,0.111,0.019;AN=2;DP=1659;set=filterInvariant-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant13-variant15-filterInvariant17-variant18-variant19-filterInvariant21-variant22-filterInvariant23-variant24-filterInvariant25-filterInvariant31-filterInvariant33-filterInvariant35-variant36-variant37-filterInvariant39-filterInvariant40-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:30:99:5,9,4,12
chr1	1469263	.	G	T	507.88	PASS	AC=1;AF=0.5;AN=2;DP=617;FractionInformativeReads=1;set=variant13-variant14-variant15-variant16-variant23-variant26-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,34:86:99:628,0,1413:33,19,21,13
chr1	1469546	.	G	A	786.13	PASS	AC=1;AF=0.767;AN=2;DP=5039;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,84:160:99:2239,0,2190:42,34,46,38
chr1	1477244	.	T	C	1477.82	PASS	AC=1;AF=0.577;AN=2;DP=2180;MQ=60;set=variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1225,0,1325:32,19,26,18
chr1	1479333	.	A	G	808.99	PASS	AC=1;AF=0.577;AN=2;DP=2175;MQ=60;set=variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,45:99:99:1042,0,1295:23,31,21,24
chr1	1480659	.	G	C	425.12	PASS	AC=1;AF=0.5;AN=2;DP=1581;MQ=60;set=filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant15-filterInvariant16-variant18-filterInvariant22-filterInvariant27-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant39-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:64,27:91:99:258,0,1537:1,63,27,0
chr1	1481175	.	C	A	448.33	PASS	AC=1;AF=0.591;AN=2;DP=513;FractionInformativeReads=1;set=variant4-variant6-variant8-variant10-variant11-variant14-variant15-variant17-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:277,0,473:11,8,7,5
chr1	1481348	.	T	C	356.04	PASS	AC=1;AF=0.523;AN=2;DP=1033;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant11-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant28-variant29-variant30-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:448,0,644:10,15,10,9
chr1	1497641	.	TTTTC	T	109.68	PASS	AC=1;AF=0.583;AN=2;DP=324;MQ=60;set=variant4-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:634,0,364:4,3,11,5
chr1	1499298	.	A	G	363.97	PASS	AC=1;AF=0.593;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,7:28:99:157,0,502:11,10,3,4
chr1	1509825	.	A	G	2603.23	PASS	AC=1;AF=0.596;AN=2;DP=4730;MQ=60;set=variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,106:252:99:2493,0,3568:82,64,63,43
chr1	1510035	.	GGC	G	1281.93	PASS	AC=1;AF=0.596;AN=2;DP=1836;MQ=60;set=variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1746,0,1788:15,29,15,30
chr1	1510801	.	C	T	163.81	PASS	AC=1;AF=0.596;AN=2;DP=476;MQ=60;set=variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:397,0,218:1,6,3,10
chr1	1534614	.	T	C	3678.6	PASS	AC=1;AF=0.618;AN=2;DP=3440;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant11-variant15-variant18-variant19-variant23-variant25-variant26-variant32-variant34-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:108,131:239:99:3260,0,2656:57,51,68,63
chr1	1550702	.	A	G	1419.51	PASS	AC=1;AF=0.756;AN=2;DP=1476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:832,0,336:10,6,17,15
chr1	1551249	.	C	T	755.59	PASS	AC=1;AF=0.756;AN=2;DP=759;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:380,0,443:10,5,9,2
chr1	1551927	.	T	C	3368.42	PASS	AC=1;AF=0.75;AN=2;DP=4423;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,59:119:99:1399,0,1577:31,29,28,31
chr1	1558792	.	T	C	2624.05	PASS	AC=2;AF=0.966;AN=2;DP=4846;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4058,388,0:0,0,81,49
chr1	1559971	.	C	T	304.44	PASS	AC=2;AF=0.966;AN=2;DP=671;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1126,87,0:0,0,26,3
chr1	1560103	.	C	T	1734.02	PASS	AC=1;AF=0.536;AN=2;DP=1828;MQ=60;set=variant3-variant6-variant7-variant8-variant15-variant19-variant23-variant25-variant26-variant32-variant33-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:111,94:205:99:2286,0,2731:64,47,54,40
chr1	1560851	.	A	C	212.47	PASS	AC=1;AF=0.5;AN=2;DP=786;set=variant4-filterInvariant9-filterInvariant15-filterInvariant27-filterInvariant30-filterInvariant31-filterInvariant39-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:114,22:136:99:379,0,4767:33,81,22,0
chr1	1560865	.	T	C	141.37	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=369;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:125,20:145:99:302,0,5667:40,85,20,0
chr1	1560867	.	A	C	268.62	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=148;FS=76.853;FractionInformativeReads=1;MQ=60;MQRankSum=2.155;QD=1.82;ReadPosRankSum=-3.548;SOR=5.992;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:129,19:148:99:297,0,5667:45,84,19,0
chr1	1562437	.	C	G	2896.53	PASS	AC=1;AF=0.625;AN=2;DP=3221;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant11-variant13-variant15-variant18-variant19-variant23-variant25-variant26-variant32-variant34-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,76:181:99:2237,0,3098:38,67,30,46
chr1	1562536	.	G	A	2477.35	PASS	AC=1;AF=0.5;AN=2;DP=1204;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant15-variant23-variant26-variant34-variant40	GT:AD:DP:GQ:PL:SB	0/1:102,95:197:99:2630,0,2820:63,39,56,39
chr1	1564712	.	G	T	4542.65	PASS	AC=1;AF=0.625;AN=2;DP=2841;MQ=60;set=variant2-variant5-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant22-variant25-variant26-variant29-variant31-variant33-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,71:167:99:1484,0,2292:49,47,25,46
chr1	1566065	.	A	AG	374.15	PASS	AC=1;AF=0.553;AN=2;DP=857;set=variant3-variant4-filterInvariant6-variant7-variant8-variant11-variant12-variant15-variant18-variant19-variant24-filterInvariant26-variant32-variant34-variant35-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:310,0,657:9,20,3,13
chr1	1566068	.	A	G	791.3	PASS	AC=2;AF=0.841;AN=2;DP=1734;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2060,179,0:0,0,16,44
chr1	1571640	.	G	T	290.07	PASS	AC=1;AF=0.635;AN=2;DP=743;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant25-variant26-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:631,0,408:12,1,17,0
chr1	1574019	.	A	G	232.83	PASS	AC=1;AF=0.515;AN=2;DP=2036;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1071,0,910:18,23,19,30
chr1	1574076	.	G	A	206.69	PASS	AC=1;AF=0.515;AN=2;DP=1379;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-filterInvariant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,37:62:99:884,0,647:4,21,10,27
chr1	1575616	.	T	C	1989.91	PASS	AC=2;AF=0.977;AN=2;DP=2881;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2394,246,0:0,0,63,19
chr1	1575836	.	C	G	2109.87	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=11550;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:307,177:484:99:2926,0,6808:123,184,92,85
chr1	1577003	.	C	T	83.7	DRAGENHardSNP	AC=1;AF=0.75;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQRankSum=0;ReadPosRankSum=-0.72;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:47:112,0,47:0,2,0,4
chr1	1580738	.	T	A	148	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=8719;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,201:261:99:4474,0,834:21,39,66,135
chr1	1581558	.	C	T	543.7	PASS	AC=2;AF=0.964;AN=2;DP=471;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-filterInvariant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:575,48,0:0,0,2,14
chr1	1581586	.	T	C	455.93	PASS	AC=2;AF=0.988;AN=2;DP=360;FS=0;MQRankSum=-2.857;ReadPosRankSum=-0.328;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:524,45,0:0,0,7,8
chr1	1581713	.	A	C,G	818.77	PASS	AC=1,0;AF=0.589,0.071;AN=2;DP=1616;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant25-variant26-filterInvariant27-variant29-variant30-variant31-variant33-filterInvariant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:DP:GQ:SB	0/1:81:99:22,8,36,15
chr1	1581759	.	G	A	83.67	PASS	AC=1;AF=0.5;AN=2;DP=4743;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,31:161:99:517,0,3319:74,56,21,10
chr1	1581926	.	G	T	361.78	PASS	AC=1;AF=0.5;AN=2;DP=3853;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,25:90:99:555,0,1891:25,40,6,19
chr1	1582106	.	T	C	2887.64	PASS	AC=2;AF=0.977;AN=2;DP=5193;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3927,396,0:0,0,87,45
chr1	1582202	.	C	T	940.35	PASS	AC=1;AF=0.5;AN=2;DP=9587;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,144:270:99:2982,0,2581:67,59,74,70
chr1	1582794	.	C	A	171.06	PASS	AC=2;AF=0.955;AN=2;DP=669;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:579,54,0:0,0,12,6
chr1	1582841	.	A	G	379.63	PASS	AC=1;AF=0.5;AN=2;DP=613;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:275,0,392:6,4,4,4
chr1	1582844	.	G	T	379.63	PASS	AC=1;AF=0.5;AN=2;DP=611;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:278,0,354:5,4,3,4
chr1	1582880	.	G	C	38.35	PASS	AC=1;AF=0.5;AN=2;DP=2018;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:464,0,616:17,6,11,9
chr1	1582961	.	G	C	552.78	PASS	AC=1;AF=0.513;AN=2;DP=5742;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,98:167:99:2240,0,1270:31,38,55,43
chr1	1583003	.	C	T	36.46	PASS	AC=1;AF=0.5;AN=2;DP=6943;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,64:184:99:1079,0,2708:65,55,30,34
chr1	1583669	.	C	CT	1119.03	PASS	AC=2;AF=0.965;AN=2;DP=1469;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1573,117,0:0,0,6,33
chr1	1585597	.	A	G	1221.47	PASS	AC=2;AF=0.75;AN=2;DP=3841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3212,311,0:0,0,58,46
chr1	1585642	.	G	T	1183.17	PASS	AC=2;AF=0.75;AN=2;DP=4536;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3696,346,0:1,0,65,56
chr1	1586752	.	T	C	2340.97	PASS	AC=2;AF=0.989;AN=2;DP=3123;MQRankSum=1.009;ReadPosRankSum=1.492;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2804,252,0:0,0,59,25
chr1	1588670	.	G	A	98.08	PASS	AC=1;AF=0.5;AN=2;DP=3214;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,34:92:99:823,0,1508:37,21,22,12
chr1	1588717	.	G	A	59.09	PASS	AC=1;AF=0.5;AN=2;DP=4516;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,39:145:99:1221,0,4515:65,41,19,20
chr1	1588737	.	C	T	282.57	PASS	AC=1;AF=0.5;AN=2;DP=5037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,34:159:99:1086,0,5447:74,51,14,20
chr1	1588743	.	A	T	276.52	PASS	AC=1;AF=0.5;AN=2;DP=5130;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,33:163:99:1033,0,5579:75,55,13,20
chr1	1588744	.	AGCG	A	261.54	PASS	AC=1;AF=0.5;AN=2;DP=5231;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,33:169:99:973,0,5796:80,56,13,20
chr1	1595867	.	C	A	1455.21	PASS	AC=2;AF=1;AN=2;DP=4128;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4206,446,0:0,0,79,70
chr1	1596196	.	C	T	38.27	PASS	AC=2;AF=1;AN=2;DP=9;FS=0;FractionInformativeReads=1;set=variant15-variant18-variant33-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:66,6,0:0,0,1,1
chr1	1596304	.	G	A	88.71	PASS	AC=2;AF=0.794;AN=2;DP=222;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:435,30,0:0,0,10,0
chr1	1596974	.	C	T	3788.7	PASS	AC=2;AF=0.989;AN=2;DP=5315;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3712,336,0:0,0,44,68
chr1	1599812	.	C	T	495.65	PASS	AC=1;AF=0.524;AN=2;DP=1730;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:868,0,546:15,13,26,0
chr1	1599888	.	A	G	2767.6	PASS	AC=1;AF=0.568;AN=2;DP=5891;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:67,108:175:99:2883,0,1093:34,33,73,35
chr1	1599940	.	C	T	165.78	PASS	AC=1;AF=0.5;AN=2;DP=1733;set=filterInvariant11-variant14-filterInvariant15-filterInvariant17-variant20-filterInvariant27-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35	GT:AD:DP:GQ:PL:SB	0/1:147,37:184:99:365,0,3815:79,68,17,20
chr1	1599974	.	A	C	172.99	PASS	AC=1;AF=0.5;AN=2;DP=2002;set=filterInvariant11-variant14-variant15-filterInvariant17-filterInvariant18-variant20-filterInvariant27-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:139,37:176:99:416,0,3608:62,77,17,20
chr1	1602787	.	G	T	1213.76	PASS	AC=2;AF=1;AN=2;DP=1683;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1100,117,0:0,0,20,19
chr1	1607686	.	A	G	40.3	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=11;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:100,9,0:0,0,1,2
chr1	1608229	.	C	T	205.22	PASS	AC=1;AF=0.765;AN=2;DP=160;FS=0;FractionInformativeReads=1;set=filterInvariant2-filterInvariant3-filterInvariant6-filterInvariant10-filterInvariant13-filterInvariant15-variant16-filterInvariant17-filterInvariant19-filterInvariant21-filterInvariant25-filterInvariant31-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:72:72,0,107:3,2,2,2
chr1	1633003	.	C	CCG,CCGG	189.89	PASS	AC=2,0;AF=0.714,0.143;AN=2;DP=44;set=variant3-variant6-variant10-variant15-variant32-variant35-variant41	GT:DP:GQ:SB	1/1:5:15:0,0,5,0
chr1	1635004	.	T	C	1839.55	PASS	AC=2;AF=0.757;AN=2;DP=5897;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,209:209:99:5962,626,0:0,0,114,95
chr1	1635619	.	T	C	6367.38	PASS	AC=2;AF=0.75;AN=2;DP=7889;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7360,737,0:0,0,119,128
chr1	1635749	.	C	A	2329.6	PASS	AC=2;AF=0.7;AN=2;DP=6100;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,209:209:99:6306,622,0:0,0,109,100
chr1	1636044	.	G	A	5047.46	PASS	AC=2;AF=0.75;AN=2;DP=12609;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-filterInvariant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,334:334:99:10092,996,0:0,0,136,198
chr1	1636209	.	A	G	664.42	PASS	AC=1;AF=0.5;AN=2;DP=201;FractionInformativeReads=1;set=variant15-variant29-filterInvariant31	GT:AD:DP:GQ:PL:SB	0/1:53,26:79:99:693,0,1738:33,20,5,21
chr1	1636274	.	C	T	2177.68	PASS	AC=2;AF=0.691;AN=2;DP=3908;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3616,353,0:0,1,73,48
chr1	1639046	.	C	G	793.85	PASS	AC=2;AF=1;AN=2;DP=441;FS=0;FractionInformativeReads=1;set=variant-variant2-variant6-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant23-variant32-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1147,93,0:0,0,0,31
chr1	1639062	.	T	C	466.7	PASS	AC=2;AF=0.941;AN=2;DP=157;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant6-filterInvariant8-filterInvariant11-variant12-filterInvariant14-filterInvariant15-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant23-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:422,39,0:0,0,0,13
chr1	1639801	.	T	C	132.2	PASS	AC=2;AF=0.875;AN=2;DP=80;FractionInformativeReads=1;set=filterInvariant2-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant17-filterInvariant18-variant23-variant24-variant27-filterInvariant32-filterInvariant35-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:83,9,0:0,0,1,2
chr1	1644908	.	C	T	422.34	PASS	AC=2;AF=0.955;AN=2;DP=966;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1604,150,0:0,0,15,35
chr1	1645050	.	C	T	248.72	PASS	AC=2;AF=0.974;AN=2;DP=412;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:465,51,0:0,0,7,10
chr1	1646074	.	A	G	151.77	PASS	AC=2;AF=0.825;AN=2;DP=79;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant6-variant7-filterInvariant9-filterInvariant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant22-variant24-filterInvariant25-variant30-variant32-variant33-filterInvariant35-variant39-variant40-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,2,1
chr1	1646077	.	G	T	151.77	PASS	AC=2;AF=0.825;AN=2;DP=82;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant6-variant7-filterInvariant9-filterInvariant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant22-variant24-filterInvariant25-variant30-variant32-variant33-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,2,1
chr1	1646113	.	G	C	102.81	PASS	AC=2;AF=0.852;AN=2;DP=118;FractionInformativeReads=1;set=variant3-variant4-variant7-filterInvariant9-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:171,15,0:0,0,4,1
chr1	1646231	.	T	C	40.54	PASS	AC=2;AF=0.952;AN=2;DP=575;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:36:537,36,0:0,0,11,0
chr1	1646236	.	C	T	40.54	PASS	AC=2;AF=0.942;AN=2;DP=702;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:537,36,0:0,0,12,0
chr1	1646371	.	G	T	100.99	PASS	AC=2;AF=0.714;AN=2;DP=1304;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1288,135,0:0,0,17,28
chr1	1646427	.	T	G	395.83	PASS	AC=2;AF=0.964;AN=2;DP=723;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:506,42,0:0,0,2,12
chr1	1646450	.	G	A	168.83	PASS	AC=2;AF=0.976;AN=2;DP=411;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:371,30,0:0,0,1,9
chr1	1646657	.	T	C	198.68	PASS	AC=2;AF=0.985;AN=2;DP=155;FS=0;set=variant3-filterInvariant4-variant5-variant7-variant8-variant9-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant27-variant29-variant30-filterInvariant31-variant32-variant33-variant35-variant36-variant38-filterInvariant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:169,12,0:0,0,4,0
chr1	1646789	.	T	C	429.52	PASS	AC=2;AF=0.953;AN=2;DP=1616;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1478,138,0:0,0,30,16
chr1	1647722	.	G	T	1078.09	PASS	AC=1;AF=0.511;AN=2;DP=2553;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,23:66:99:947,0,2955:36,7,19,4
chr1	1647725	.	G	A	1063.04	PASS	AC=1;AF=0.511;AN=2;DP=2745;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,27:76:99:1028,0,3016:39,10,22,5
chr1	1647726	.	T	G	1051	PASS	AC=1;AF=0.511;AN=2;DP=2799;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,27:76:99:1067,0,3079:39,10,22,5
chr1	1647729	.	C	T	1090	PASS	AC=1;AF=0.511;AN=2;DP=2995;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,31:83:99:1232,0,3266:42,10,25,6
chr1	1647730	.	A	G	1090	PASS	AC=1;AF=0.511;AN=2;DP=3071;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,34:88:99:1232,0,3266:44,10,28,6
chr1	1647745	.	G	A	1900.84	PASS	AC=1;AF=0.511;AN=2;DP=4407;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,57:119:99:2248,0,3456:48,14,38,19
chr1	1647753	.	C	T	2022.4	PASS	AC=1;AF=0.511;AN=2;DP=5070;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,68:139:99:2504,0,3568:54,17,45,23
chr1	1647778	.	C	G	2535.07	PASS	AC=1;AF=0.511;AN=2;DP=7411;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:100,86:186:99:2222,0,2806:68,32,55,31
chr1	1647814	.	T	C	3796.76	PASS	AC=1;AF=0.511;AN=2;DP=10746;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:153,129:282:99:3118,0,3802:94,59,78,51
chr1	1647871	.	T	C	4237.5	PASS	AC=1;AF=0.511;AN=2;DP=13363;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:188,163:351:99:3843,0,4506:90,98,82,81
chr1	1647893	.	C	CTTTCTT	6300.47	PASS	AC=1;AF=0.511;AN=2;DP=12051;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:171,135:306:99:5058,0,6693:75,96,62,73
chr1	1647968	.	C	CAT	2494.68	PASS	AC=1;AF=0.511;AN=2;DP=5490;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:89,64:153:99:2378,0,3491:26,63,14,50
chr1	1647971	.	G	A	2343.37	PASS	AC=1;AF=0.511;AN=2;DP=4943;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,59:143:99:2293,0,3500:24,60,13,46
chr1	1647983	.	T	A	1606.07	PASS	AC=1;AF=0.511;AN=2;DP=3799;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:69,48:117:99:1666,0,2687:18,51,11,37
chr1	1647990	.	C	T	1302.97	PASS	AC=1;AF=0.511;AN=2;DP=3225;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,40:101:99:1590,0,2509:16,45,6,34
chr1	1648002	.	C	T	1117.93	PASS	AC=1;AF=0.511;AN=2;DP=2554;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,29:78:99:935,0,1559:11,38,3,26
chr1	1648018	.	C	T	652.33	PASS	AC=1;AF=0.511;AN=2;DP=1789;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,15:50:99:546,0,1192:6,29,0,15
chr1	1648027	.	T	C	966.69	PASS	AC=2;AF=0.955;AN=2;DP=1376;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1366,96,0:0,0,1,31
chr1	1650787	.	T	C	1683.71	PASS	AC=1;AF=0.511;AN=2;DP=3813;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,44:101:99:1780,0,2252:31,26,27,17
chr1	1650797	.	A	G	1999.66	PASS	AC=1;AF=0.511;AN=2;DP=4140;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1927,0,2534:34,28,31,19
chr1	1650801	.	T	C	2015.38	PASS	AC=1;AF=0.511;AN=2;DP=4267;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:64,53:117:99:1967,0,2550:35,29,32,21
chr1	1650807	.	T	C	347.47	PASS	AC=1;AF=0.5;AN=2;DP=4385;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,64:118:99:1650,0,2075:33,21,35,29
chr1	1650832	.	A	G	1512.51	PASS	AC=1;AF=0.511;AN=2;DP=5041;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,70:140:99:1780,0,2767:39,31,41,29
chr1	1650845	.	G	A	397.67	PASS	AC=1;AF=0.5;AN=2;DP=5241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,73:154:99:1563,0,3013:47,34,37,36
chr1	1650920	.	G	A	472.1	PASS	AC=1;AF=0.513;AN=2;DP=4605;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,78:145:99:3030,0,2441:29,38,35,43
chr1	1650938	.	CGG	C	1725.69	PASS	AC=1;AF=0.511;AN=2;DP=4528;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:65,73:138:99:2870,0,2525:28,37,34,39
chr1	1650942	.	A	AAG	1722.69	PASS	AC=1;AF=0.511;AN=2;DP=4383;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,69:131:99:2831,0,2486:27,35,31,38
chr1	1650960	.	G	A	1134.99	PASS	AC=1;AF=0.511;AN=2;DP=3573;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,58:114:99:2232,0,2225:24,32,26,32
chr1	1650967	.	T	C	934.07	PASS	AC=1;AF=0.511;AN=2;DP=3282;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:2196,0,2144:22,31,24,31
chr1	1650996	.	T	C	568.79	PASS	AC=1;AF=0.511;AN=2;DP=2222;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:1107,0,1351:13,22,11,18
chr1	1651003	.	G	A	511.31	PASS	AC=1;AF=0.511;AN=2;DP=1956;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:1077,0,1275:12,21,11,17
chr1	1651077	.	C	CTCGCTCTGTCACCCAGGCT	134.21	PASS	AC=2;AF=0.896;AN=2;DP=180;FS=0;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant25-variant27-variant33-variant34-variant35-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,7:8:3:294,3,0:0,1,2,5
chr1	1652991	.	G	A	2316.22	PASS	AC=1;AF=0.75;AN=2;DP=146;FractionInformativeReads=1;MQRankSum=-0.846;ReadPosRankSum=-1.702;set=variant8-variant15	GT:AD:DP:GQ:PL:SB	0/1:54,42:96:99:1114,0,1496:35,19,29,13
chr1	1653004	.	T	C	1033.93	PASS	AC=2;AF=0.953;AN=2;DP=4626;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:5097,349,0:0,0,71,41
chr1	1653028	.	C	T	1345.1	PASS	AC=2;AF=0.953;AN=2;DP=5736;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:6065,451,0:0,0,82,67
chr1	1654038	.	G	A	370.86	PASS	AC=2;AF=0.95;AN=2;DP=505;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:355,33,0:0,0,9,2
chr1	1654058	.	C	T	202.23	PASS	AC=2;AF=0.919;AN=2;DP=986;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:78:1170,78,0:0,0,19,6
chr1	1654064	.	A	T	238.14	PASS	AC=2;AF=0.919;AN=2;DP=1096;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:84:1252,84,0:0,0,21,6
chr1	1654065	.	AGCG	A	220.16	PASS	AC=2;AF=0.919;AN=2;DP=1137;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:85:1252,85,0:0,0,22,6
chr1	1657021	.	T	C	241.7	DRAGENHardSNP	AC=1;AF=0.879;AN=2;DP=291;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:29:263,0,29:0,2,3,7
chr1	1661844	.	G	C	1130.11	PASS	AC=2;AF=0.591;AN=2;DP=8095;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,275:275:99:7724,823,0:0,0,127,148
chr1	1663605	.	A	G	283.53	PASS	AC=2;AF=0.938;AN=2;DP=221;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:399,27,0:0,0,9,0
chr1	1663831	.	C	T	1396.96	PASS	AC=2;AF=0.682;AN=2;DP=4731;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4530,445,0:0,0,85,64
chr1	1664019	.	T	C	883.8	PASS	AC=2;AF=0.929;AN=2;DP=4278;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3899,382,0:0,0,55,73
chr1	1664124	.	T	C	330.96	PASS	AC=2;AF=0.915;AN=2;DP=2013;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1896,182,0:0,0,21,40
chr1	1666175	.	C	T	286.66	PASS	AC=1;AF=0.547;AN=2;DP=894;set=variant2-variant3-filterInvariant6-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant14-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-variant29-variant30-filterInvariant31-filterInvariant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,14:17:45:295,0,45:2,1,7,7
chr1	1666251	.	G	A	939.61	PASS	AC=1;AF=0.517;AN=2;DP=2172;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:70:70,0,322:7,8,4,0
chr1	1666338	.	G	A	215.07	PASS	AC=1;AF=0.878;AN=2;DP=3058;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,17:19:42:706,0,42:1,1,9,8
chr1	1666342	.	A	G	218.08	PASS	AC=1;AF=0.667;AN=2;DP=1568;set=variant-filterInvariant2-filterInvariant3-variant6-variant8-filterInvariant9-variant13-variant14-variant15-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-filterInvariant24-filterInvariant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,17:19:42:706,0,42:1,1,9,8
chr1	1669734	.	G	T	2187.53	PASS	AC=2;AF=0.688;AN=2;DP=7298;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,320:321:99:9300,946,0:0,1,196,124
chr1	1670570	.	T	C	78.15	PASS	AC=2;AF=0.742;AN=2;DP=262;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-filterInvariant5-variant7-filterInvariant9-filterInvariant10-variant11-variant12-filterInvariant15-variant17-filterInvariant18-filterInvariant19-variant20-variant21-variant23-variant24-filterInvariant25-variant26-variant27-variant28-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:123,12,0:0,0,0,4
chr1	1683565	.	G	A	1632.12	PASS	AC=2;AF=0.613;AN=2;DP=5385;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,214:215:99:6470,633,0:1,0,134,80
chr1	1685213	.	C	G	169.68	PASS	AC=2;AF=0.92;AN=2;DP=923;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1058,75,0:0,0,6,19
chr1	1685422	.	G	A	3455.24	PASS	AC=1;AF=0.5;AN=2;DP=255;FS=2.218;FractionInformativeReads=1;MQ=60;MQRankSum=2.028;QD=13.55;ReadPosRankSum=2.258;SOR=0.563;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:119,136:255:99:3483,0,3170:80,39,87,49
chr1	1686040	.	G	T	1804.46	PASS	AC=2;AF=0.609;AN=2;DP=8264;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:7948,731,0:0,0,148,96
chr1	1686087	.	C	G	3024.11	PASS	AC=1;AF=0.5;AN=2;DP=340;FS=2.969;FractionInformativeReads=1;MQ=60;MQRankSum=-0.204;QD=8.89;ReadPosRankSum=0.255;SOR=0.552;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:206,134:340:99:3052,0,5369:117,89,71,63
chr1	1686943	.	T	C	936.39	PASS	AC=2;AF=0.676;AN=2;DP=1279;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2055,138,0:0,0,11,35
chr1	1686962	.	C	T	822.19	PASS	AC=2;AF=0.682;AN=2;DP=926;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1755,117,0:0,0,11,28
chr1	1687625	.	T	C	218.85	PASS	AC=2;AF=0.606;AN=2;DP=949;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1264,114,0:0,0,28,10
chr1	1688192	.	A	G	653.81	PASS	AC=2;AF=0.919;AN=2;DP=2704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2871,267,0:0,0,44,45
chr1	1688469	.	C	G	279.8	PASS	AC=2;AF=0.93;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:524,51,0:0,0,5,12
chr1	1688513	.	G	T	112.25	PASS	AC=2;AF=0.648;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:318,24,0:0,0,2,6
chr1	1689762	.	T	C	518.28	PASS	AC=2;AF=0.614;AN=2;DP=1423;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1402,146,0:0,0,30,19
chr1	1690126	.	A	AAC	124.67	PASS	AC=2;AF=0.92;AN=2;DP=685;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:961,66,0:0,0,2,20
chr1	1696659	.	A	G	116.32	PASS	AC=2;AF=0.932;AN=2;DP=686;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:836,78,0:0,0,16,10
chr1	1709897	.	G	T	219.51	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.113;QD=13.72;ReadPosRankSum=1.359;SOR=0.892;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:98:248,0,98:2,3,4,7
chr1	1710035	.	C	T	401	PASS	AC=1;AF=0.743;AN=2;DP=412;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:96:96,0,128:4,3,3,0
chr1	1724503	.	C	CA	166.07	PASS	AC=1;AF=0.6;AN=2;DP=318;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant34-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:175,0,156:6,2,8,1
chr1	1770788	.	C	G	1435.72	PASS	AC=1;AF=0.583;AN=2;DP=1822;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant34-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:71,65:136:99:2450,0,4374:16,55,17,48
chr1	1770789	.	T	A	1435.72	PASS	AC=1;AF=0.583;AN=2;DP=1778;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant34-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:71,62:133:99:2450,0,4374:16,55,15,47
chr1	1822209	.	C	T	39.12	PASS	AC=1;AF=0.594;AN=2;DP=224;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant27-variant32-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:129,0,129:3,3,4,2
chr1	1823524	.	G	C	541.37	PASS	AC=1;AF=0.522;AN=2;DP=875;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:390,0,759:14,10,9,4
chr1	1823922	.	A	G	318.22	PASS	AC=2;AF=0.955;AN=2;DP=3831;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3822,344,0:0,0,56,59
chr1	1846461	.	C	T	530.79	PASS	AC=1;AF=0.579;AN=2;DP=1755;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,60:112:99:1530,0,1609:23,29,27,33
chr1	1846582	.	A	G	824.25	PASS	AC=1;AF=0.756;AN=2;DP=3632;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1391,0,1343:22,26,25,24
chr1	1848734	.	A	G	430.67	PASS	AC=1;AF=0.929;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:329,0,384:5,8,3,8
chr1	1850136	.	C	T	1089.67	PASS	AC=1;AF=0.575;AN=2;DP=2017;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,56:125:99:1308,0,1694:34,35,25,31
chr1	1853615	.	T	TCTGA	367.6	PASS	AC=2;AF=1;AN=2;DP=769;FS=0;MQ=60;MQRankSum=-0.742;ReadPosRankSum=-0.628;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1610,108,0:0,0,28,5
chr1	1854321	.	A	G	432.35	PASS	AC=1;AF=0.738;AN=2;DP=1185;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:398,0,793:15,9,4,8
chr1	1855450	.	A	G	93.15	PASS	AC=1;AF=0.786;AN=2;DP=736;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:351,0,214:4,6,3,9
chr1	1856098	.	C	T	387.54	PASS	AC=1;AF=0.588;AN=2;DP=676;MQ=60;set=variant2-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:640,0,680:7,17,6,17
chr1	1858309	.	T	C	2274.76	PASS	AC=1;AF=0.592;AN=2;DP=10099;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,122:289:99:3209,0,4003:83,84,54,68
chr1	1859131	.	C	T	2205.4	PASS	AC=1;AF=0.588;AN=2;DP=3352;MQ=60;set=variant2-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,111:256:99:2440,0,3511:81,64,61,50
chr1	1870210	.	G	A	186.75	PASS	AC=1;AF=0.768;AN=2;DP=978;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:419,0,549:13,4,11,2
chr1	1873625	.	G	A	629.05	PASS	AC=1;AF=0.588;AN=2;DP=845;MQ=60;set=variant2-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:658,0,683:8,16,10,13
chr1	1886500	.	GCGGCTC	G	613.66	PASS	AC=1;AF=0.614;AN=2;DP=858;set=variant-variant2-variant5-variant7-variant8-variant14-variant15-variant16-variant19-variant20-variant22-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,36:50:99:1250,0,486:14,0,28,8
chr1	1886507	.	ACACCGGAAGTGC	A	607.94	PASS	AC=1;AF=0.614;AN=2;DP=917;set=variant-variant2-variant5-variant7-variant8-variant14-variant15-variant16-variant19-variant20-variant22-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:1236,0,613:17,3,28,8
chr1	1886859	.	C	T	2846.71	PASS	AC=1;AF=0.605;AN=2;DP=3947;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:127,123:250:99:2835,0,3211:75,52,67,56
chr1	1887019	.	A	G	1667.8	PASS	AC=1;AF=0.768;AN=2;DP=5879;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,72:196:99:1735,0,3404:48,76,31,41
chr1	1887091	.	CG	C	1204.58	PASS	AC=1;AF=0.605;AN=2;DP=1519;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,37:98:99:1147,0,2102:21,40,12,25
chr1	1887111	.	GC	G	1185.24	PASS	AC=1;AF=0.605;AN=2;DP=1439;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,29:86:99:827,0,1863:20,37,11,18
chr1	1887245	.	G	A	1786.64	PASS	AC=1;AF=0.583;AN=2;DP=2144;MQ=60;set=variant2-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,84:147:99:1946,0,1383:30,33,46,38
chr1	1888193	.	C	A	1869.99	PASS	AC=1;AF=0.605;AN=2;DP=2665;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,95:173:99:2398,0,1843:35,43,47,48
chr1	1888330	.	C	T	353.46	PASS	AC=2;AF=0.658;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1498,126,0:0,0,10,32
chr1	1895177	.	C	T	914.61	PASS	AC=1;AF=0.559;AN=2;DP=1294;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:1048,0,1073:28,11,28,13
chr1	1896440	.	G	A	942.84	PASS	AC=1;AF=0.559;AN=2;DP=2579;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:121,64:185:99:1438,0,2999:63,58,27,37
chr1	1896553	.	C	T	475.21	PASS	AC=1;AF=0.559;AN=2;DP=1397;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,30:89:99:654,0,1694:19,40,13,17
chr1	1897753	.	C	G	499.21	PASS	AC=1;AF=0.559;AN=2;DP=1010;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,29:68:99:619,0,914:21,18,17,12
chr1	1900024	.	TG	T	801.34	PASS	AC=1;AF=0.559;AN=2;DP=863;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:1093,0,1117:23,10,24,8
chr1	1900106	.	T	TCTC	1502.49	PASS	AC=1;AF=0.529;AN=2;DP=2089;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,86:153:99:3479,0,2733:37,30,52,34
chr1	1900232	.	T	C	1328.25	PASS	AC=1;AF=0.603;AN=2;DP=5110;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:96,97:193:99:2311,0,2211:47,49,41,56
chr1	1900332	.	A	G	503.92	PASS	AC=1;AF=0.567;AN=2;DP=714;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant23-variant28-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:1098,0,1540:7,23,13,17
chr1	1900339	.	A	G	506.47	PASS	AC=1;AF=0.559;AN=2;DP=729;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:1015,0,1453:4,22,12,13
chr1	1903357	.	G	C	516.51	PASS	AC=1;AF=0.611;AN=2;DP=599;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant11-variant12-variant15-variant16-variant17-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:791,0,665:17,5,20,6
chr1	1905790	.	A	G	348.68	PASS	AC=1;AF=0.676;AN=2;DP=373;MQ=60;set=variant3-variant6-variant9-variant11-variant12-variant15-variant16-variant17-variant23-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:408,0,472:6,9,2,11
chr1	1916890	.	C	T	1094.72	PASS	AC=1;AF=0.643;AN=2;DP=3514;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:130,94:224:99:1996,0,3397:54,76,40,54
chr1	1918191	.	A	G	54.14	PASS	AC=1;AF=0.676;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:244,0,118:3,1,6,3
chr1	1918488	.	A	G	769.45	PASS	AC=1;AF=0.653;AN=2;DP=4387;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,51:127:99:1148,0,1906:31,45,23,28
chr1	1918535	.	A	T	372.24	PASS	AC=1;AF=0.571;AN=2;DP=1758;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,37:91:99:734,0,1310:19,35,15,22
chr1	1918584	.	C	T	258.3	PASS	AC=1;AF=0.571;AN=2;DP=910;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:412,0,667:8,16,8,12
chr1	1918595	.	G	A	242.46	PASS	AC=1;AF=0.548;AN=2;DP=760;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:416,0,582:7,15,6,12
chr1	1922303	.	C	T	647.24	PASS	AC=1;AF=0.653;AN=2;DP=1917;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:615,0,1022:20,18,13,14
chr1	1956362	.	G	A	1237.99	PASS	AC=2;AF=0.86;AN=2;DP=9196;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,268:268:99:7825,800,0:0,0,152,116
chr1	1957037	.	T	C	3027.07	PASS	AC=2;AF=0.72;AN=2;DP=17463;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,494:494:99:14971,1480,0:0,0,229,265
chr1	1959699	.	G	A	1256.45	PASS	AC=1;AF=0.5;AN=2;DP=428;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant15-variant19-variant25-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:870,0,1135:24,24,20,21
chr1	1960926	.	T	C	427.94	PASS	AC=2;AF=0.884;AN=2;DP=1358;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1457,111,0:0,0,30,7
chr1	1981836	.	C	T	70.68	PASS	AC=2;AF=0.889;AN=2;DP=291;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:153,18,0:0,0,2,4
chr1	2005740	.	T	C	1889.94	PASS	AC=2;AF=0.932;AN=2;DP=2873;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2411,229,0:0,0,24,53
chr1	2036263	.	G	A	2418.21	PASS	AC=2;AF=0.744;AN=2;DP=3949;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,108:109:99:3156,315,0:0,1,55,53
chr1	2106840	.	T	C	328.54	PASS	AC=2;AF=1;AN=2;DP=627;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:464,33,0:0,0,0,11
chr1	2106896	.	T	C	61.77	PASS	AC=2;AF=1;AN=2;DP=186;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr1	2118539	.	T	C	434.21	PASS	AC=1;AF=0.75;AN=2;DP=1598;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:459,0,519:14,7,13,7
chr1	2121118	.	C	T	2926.23	PASS	AC=1;AF=0.757;AN=2;DP=7430;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,105:195:99:2627,0,2234:53,37,65,40
chr1	2125976	.	C	A	83.27	PASS	AC=1;AF=0.542;AN=2;DP=85;MQ=60;set=variant-variant2-variant6-variant9-variant15-variant16-variant17-variant21-variant23-variant29-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,122:3,0,2,0
chr1	2126139	.	C	G	161.96	PASS	AC=2;AF=1;AN=2;DP=505;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:292,33,0:0,0,5,6
chr1	2144788	.	A	G	4672.92	PASS	AC=1;AF=0.554;AN=2;DP=5005;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,95:198:99:2302,0,2641:52,51,50,45
chr1	2144982	.	G	T	3444.13	PASS	AC=2;AF=0.829;AN=2;DP=4014;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3086,306,0:0,0,39,63
chr1	2234251	.	A	G	238.54	PASS	AC=1;AF=0.821;AN=2;DP=632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:135,0,427:11,0,4,0
chr1	2240006	.	T	C	7534.4	PASS	AC=1;AF=0.826;AN=2;DP=9640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,129:288:99:3148,0,3993:90,69,71,58
chr1	2241376	.	C	CT,CTT	405.72	PASS	AC=1,0;AF=0.577,0.244;AN=2;DP=562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:16:99:6,2,4,4
chr1	2252759	.	A	G	2072.78	PASS	AC=1;AF=0.581;AN=2;DP=4216;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,101:185:99:2471,0,2163:51,33,52,49
chr1	2286947	.	A	G	557.96	PASS	AC=2;AF=0.881;AN=2;DP=2906;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1895,192,0:0,0,25,39
chr1	2323041	.	T	C	5410.81	PASS	AC=1;AF=0.565;AN=2;DP=3406;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:105,79:184:99:1747,0,2514:52,53,40,39
chr1	2325371	.	G	A	351.23	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant19-variant20-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:197,0,389:8,7,5,3
chr1	2326009	.	G	A	997.97	PASS	AC=2;AF=0.586;AN=2;DP=2311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3441,323,0:0,0,52,56
chr1	2326812	.	A	G	964.11	PASS	AC=2;AF=0.603;AN=2;DP=1888;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,90:92:99:2730,241,0:1,1,43,47
chr1	2328714	.	A	G	2190.97	PASS	AC=2;AF=0.955;AN=2;DP=2261;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2109,174,0:0,0,15,43
chr1	2332391	.	C	T	1978.98	PASS	AC=2;AF=0.621;AN=2;DP=3881;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:4892,494,0:0,0,79,86
chr1	2338126	.	C	A	1242.2	PASS	AC=2;AF=0.635;AN=2;DP=4257;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,204:205:99:6082,602,0:0,1,95,109
chr1	2340200	.	T	C	4682.04	PASS	AC=2;AF=0.89;AN=2;DP=9238;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,276:276:99:8222,827,0:0,0,150,126
chr1	2398864	.	C	G	402.1	PASS	AC=1;AF=0.542;AN=2;DP=520;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant12-variant15-variant16-variant19-variant20-variant21-variant35-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:495,0,526:15,7,13,10
chr1	2398991	.	C	CCGG	1497.17	PASS	AC=1;AF=0.5;AN=2;DP=145;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:40,40:80:99:1534,0,1758:23,17,25,15
chr1	2399119	.	A	G	2255.79	PASS	AC=2;AF=0.694;AN=2;DP=5468;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:6125,424,0:0,0,64,75
chr1	2399131	.	G	A	999.29	PASS	AC=1;AF=0.5;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:92,50:142:99:1028,0,2128:46,46,19,31
chr1	2399149	.	A	G	2060.83	PASS	AC=2;AF=0.694;AN=2;DP=4808;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:5903,406,0:0,0,62,70
chr1	2409811	.	C	T	1087.07	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=0.93;FractionInformativeReads=0.943;MQ=60;MQRankSum=0.552;QD=12.35;ReadPosRankSum=-1.328;SOR=0.532;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1115,0,1111:29,10,31,13
chr1	2409892	.	A	G	1373.09	PASS	AC=1;AF=0.814;AN=2;DP=4422;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,84:169:99:2265,0,2128:45,40,45,39
chr1	2410698	.	G	A	1107.77	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.788;FractionInformativeReads=1;MQ=60;MQRankSum=-1.809;QD=11.78;ReadPosRankSum=0.023;SOR=0.821;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1136,0,1351:20,29,17,28
chr1	2410773	.	TG	T	1157.58	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=3.011;FractionInformativeReads=0.976;MQ=60;MQRankSum=-0.953;QD=14.12;ReadPosRankSum=1.127;SOR=0.41;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1195,0,907:14,22,21,23
chr1	2411523	.	G	T	1039.02	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=2.862;FractionInformativeReads=1;MQ=60;MQRankSum=0.394;QD=12.67;ReadPosRankSum=1.405;SOR=0.832;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1067,0,1096:20,22,22,18
chr1	2418602	.	C	T	1169.52	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=5.157;FractionInformativeReads=1;MQ=60;MQRankSum=-0.949;QD=11.7;ReadPosRankSum=2.467;SOR=1.292;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1198,0,2130:30,25,30,15
chr1	2418625	.	C	T	1497.18	PASS	AC=1;AF=0.611;AN=2;DP=855;MQ=60;set=variant5-variant8-variant11-variant12-variant15-variant22-variant24-variant30-variant33	GT:AD:DP:GQ:PL:SB	0/1:53,64:117:99:1488,0,1916:34,19,35,29
chr1	2420590	.	T	C	652.97	PASS	AC=2;AF=0.805;AN=2;DP=2233;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2360,198,0:0,0,50,16
chr1	2420913	.	A	G	74.46	PASS	AC=1;AF=0.778;AN=2;DP=971;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:509,0,511:5,13,2,13
chr1	2422614	.	G	A	772.2	PASS	AC=2;AF=0.798;AN=2;DP=3909;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3382,323,0:0,0,66,42
chr1	2426147	.	T	C	51.33	PASS	AC=1;AF=0.5;AN=2;DP=233;MQ=60;set=variant5-variant8-variant9-variant11-filterInvariant15-variant16-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,7:35:80:80,0,2068:20,8,7,0
chr1	2426766	.	A	G	211.39	PASS	AC=2;AF=0.647;AN=2;DP=649;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:700,57,0:0,0,14,5
chr1	2428874	.	T	C	439.37	PASS	AC=2;AF=0.833;AN=2;DP=3383;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,91:94:99:2758,244,0:0,3,82,9
chr1	2430086	.	G	GGTGGGGGCC	355.95	PASS	AC=1;AF=0.5;AN=2;DP=239;MQ=60;set=variant8-variant12-variant15-variant22-variant30-variant33	GT:AD:DP:GQ:PL:SB	0/1:31,15:46:99:598,0,1528:20,11,10,5
chr1	2430617	.	C	T	2186.62	PASS	AC=2;AF=0.633;AN=2;DP=8532;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,349:351:99:10507,1030,0:2,0,165,184
chr1	2433900	.	C	T	1513.56	PASS	AC=2;AF=0.652;AN=2;DP=4398;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:4811,507,0:0,0,92,78
chr1	2435348	.	CACCT	C	269.04	PASS	AC=1;AF=0.5;AN=2;DP=562;MQ=60;set=variant2-variant9-filterInvariant15-variant18-variant19-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:79,24:103:86:86,0,3302:17,62,24,0
chr1	2435356	.	CACAGACA	C	154.74	PASS	AC=1;AF=0.5;AN=2;DP=2064;MQ=60;set=filterInvariant-variant2-variant4-filterInvariant5-variant7-variant9-variant10-variant11-variant12-filterInvariant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-filterInvariant28-variant30-variant34-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,24:100:92:92,0,3222:15,61,24,0
chr1	2435367	.	G	C	324.44	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=472;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,22:85:99:126,0,2702:7,56,22,0
chr1	2444414	.	G	A	1373.04	PASS	AC=1;AF=0.705;AN=2;DP=2861;set=variant-variant2-variant4-variant6-variant9-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant27-variant29-variant32-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,103:178:99:2374,0,1711:38,37,51,52
chr1	2452569	.	T	C	950.93	PASS	AC=2;AF=0.821;AN=2;DP=2170;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1569,137,0:0,0,31,15
chr1	2518186	.	A	G	667.58	PASS	AC=2;AF=1;AN=2;DP=909;FS=0;MQ=60;MQRankSum=1.239;ReadPosRankSum=1.569;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:931,87,0:0,0,19,10
chr1	2518856	.	G	C	1099.64	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=2.01;FractionInformativeReads=1;MQ=60;MQRankSum=-0.814;QD=14.66;ReadPosRankSum=-0.388;SOR=1.007;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1128,0,855:13,21,13,28
chr1	2522392	.	G	A	2647.81	PASS	AC=1;AF=0.7;AN=2;DP=5769;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant26-variant27-variant32-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,134:259:99:3364,0,3174:66,59,62,72
chr1	2527678	.	A	G	509.75	PASS	AC=2;AF=0.737;AN=2;DP=1352;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1835,144,0:0,0,10,38
chr1	2528133	.	T	C	5016.85	PASS	AC=2;AF=0.724;AN=2;DP=9553;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6531,624,0:0,0,78,130
chr1	2530341	.	A	AG	811.16	PASS	AC=2;AF=0.737;AN=2;DP=1145;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1270,102,0:0,0,11,23
chr1	2535566	.	A	C	280	PASS	AC=1;AF=0.5;AN=2;DP=780;MQ=60;set=variant4-filterInvariant8-filterInvariant9-filterInvariant10-variant11-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant22-filterInvariant23-variant31-filterInvariant33-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,10:54:99:201,0,3157:16,28,10,0
chr1	2535570	.	G	C	231.83	PASS	AC=1;AF=0.5;AN=2;DP=780;MQ=60;set=variant4-filterInvariant8-filterInvariant9-variant11-variant15-filterInvariant16-filterInvariant18-variant19-filterInvariant22-variant24-filterInvariant31-filterInvariant33-variant39-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:51,10:61:99:159,0,4139:22,29,10,0
chr1	2535575	.	G	C	183.69	PASS	AC=1;AF=0.5;AN=2;DP=467;MQ=60;set=variant4-variant9-filterInvariant15-variant16-filterInvariant22-variant39-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:67,10:77:99:113,0,5250:35,32,10,0
chr1	2560735	.	A	G	839.58	PASS	AC=2;AF=0.724;AN=2;DP=1882;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2208,204,0:0,0,47,21
chr1	2560882	.	G	A	2668.7	PASS	AC=2;AF=0.724;AN=2;DP=2881;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:4337,300,0:0,0,47,52
chr1	2560903	.	T	G	2517.21	PASS	AC=2;AF=0.724;AN=2;DP=2809;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:4779,342,0:0,0,53,58
chr1	2564183	.	T	C	1038.18	PASS	AC=2;AF=0.724;AN=2;DP=1927;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2646,216,0:0,0,40,32
chr1	2564465	.	T	C	1819.09	PASS	AC=2;AF=0.724;AN=2;DP=1842;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2190,198,0:0,0,30,36
chr1	2573199	.	A	G	3678.94	PASS	AC=2;AF=0.884;AN=2;DP=4829;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4024,419,0:0,0,66,74
chr1	2700117	.	C	G	1445.55	PASS	AC=1;AF=0.7;AN=2;DP=1475;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:508,0,1018:26,9,15,4
chr1	2704471	.	C	T	401.14	PASS	AC=1;AF=0.731;AN=2;DP=279;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant35-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:151,0,262:2,6,3,4
chr1	2938265	.	C	T	1099.17	PASS	AC=1;AF=0.538;AN=2;DP=1032;MQ=60;set=variant4-variant6-variant11-variant13-variant15-variant21-variant26-variant28-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1046,0,1328:21,25,16,24
chr1	2938407	.	CAGA	C	1508.91	PASS	AC=1;AF=0.538;AN=2;DP=1239;MQ=60;set=variant4-variant6-variant11-variant13-variant15-variant21-variant26-variant28-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,37:92:99:1348,0,2418:30,25,24,13
chr1	2938697	.	T	G	2746.09	PASS	AC=1;AF=0.538;AN=2;DP=2654;MQ=60;set=variant4-variant6-variant11-variant13-variant15-variant21-variant26-variant28-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:131,136:267:99:3315,0,3439:79,52,79,57
chr1	2984087	.	C	A	2118.03	PASS	AC=1;AF=0.575;AN=2;DP=3709;set=variant6-variant8-variant9-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,126:239:99:2821,0,2679:45,68,55,71
chr1	2985885	.	C	G	368.04	PASS	AC=1;AF=0.6;AN=2;DP=494;MQ=60;set=variant-variant6-variant8-variant9-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:281,0,399:6,11,3,8
chr1	3301721	.	C	T	2218.61	PASS	AC=1;AF=0.63;AN=2;DP=3080;MQ=60;set=variant-variant2-variant3-variant9-variant10-variant11-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:81,86:167:99:2282,0,1987:51,30,58,28
chr1	3310928	.	C	CCG	228.73	PASS	AC=2;AF=1;AN=2;DP=587;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:794,54,0:0,0,10,8
chr1	3311212	.	C	G	801.47	PASS	AC=2;AF=0.795;AN=2;DP=1040;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:849,92,0:0,0,12,19
chr1	3311261	.	C	T	433.73	PASS	AC=2;AF=0.75;AN=2;DP=499;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:369,39,0:0,0,5,8
chr1	3312914	.	T	G	4084.81	PASS	AC=1;AF=0.63;AN=2;DP=3121;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,81:163:99:2057,0,1729:44,38,40,41
chr1	3312963	.	C	T	1469.31	PASS	AC=1;AF=0.607;AN=2;DP=1715;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant15-variant23-variant25-variant29-variant32-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,70:142:99:1788,0,1749:35,37,36,34
chr1	3327621	.	CAT	C	444.24	PASS	AC=1;AF=0.714;AN=2;DP=49;MQ=60;set=variant7-variant8-variant15-variant25-variant29-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,187:1,2,2,0
chr1	3328358	.	T	C	1550.43	PASS	AC=2;AF=0.817;AN=2;DP=8802;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7341,740,0:0,0,125,122
chr1	3328659	.	C	T	11882.7	PASS	AC=1;AF=0.583;AN=2;DP=4494;MQ=60;set=variant7-variant8-variant15-variant25-variant27-variant29-variant32-variant35-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:215,201:416:99:4907,0,5232:107,108,87,114
chr1	3329384	.	C	T	3014.6	PASS	AC=1;AF=0.591;AN=2;DP=1250;MQ=60;set=variant7-variant8-variant15-variant25-variant27-variant29-variant32-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,69:145:99:1724,0,1968:30,46,24,45
chr1	3342109	.	G	T	288.69	PASS	AC=2;AF=0.639;AN=2;DP=956;MQ=60;set=variant-variant7-variant8-variant11-variant14-variant15-variant17-variant18-variant28-variant29-variant30-variant32-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1850,185,0:0,0,38,24
chr1	3342804	.	G	T	1093.38	PASS	AC=1;AF=0.571;AN=2;DP=2171;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant32-variant33-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,49:124:99:987,0,1643:34,41,20,29
chr1	3350134	.	T	TGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCTGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCC	224.46	PASS	AC=1;AF=0.813;AN=2;DP=42;FS=0;set=variant5-variant10-variant15-filterInvariant18-filterInvariant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,0:9:99:182,0,236:5,4,0,0
chr1	3350173	.	T	TGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCCGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCC,TGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCC	859.75	PASS	AC=0,1;AF=0.25,0.375;AN=2;DP=180;set=variant7-variant15-variant35-variant41	GT:DP:GQ:SB	0/2:39:99:24,13,0,2
chr1	3352161	.	T	TA	513.14	PASS	AC=1;AF=0.5;AN=2;DP=472;MQ=60;set=variant-variant13-variant15-variant17-variant18-variant28-variant33-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:793,0,1090:12,15,20,14
chr1	3352175	.	G	A	754.71	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=3.132;FractionInformativeReads=1;MQ=60;MQRankSum=1.055;QD=10.06;ReadPosRankSum=1.13;SOR=0.863;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:783,0,1565:23,20,14,18
chr1	3352227	.	T	C	2206.83	PASS	AC=2;AF=0.965;AN=2;DP=2861;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3254,247,0:0,0,45,37
chr1	3352228	.	G	C	794.87	PASS	AC=1;AF=0.5;AN=2;DP=1059;MQ=60;set=variant-variant5-variant7-variant13-variant15-variant17-variant18-variant20-variant22-variant25-variant27-variant28-variant33-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1252,0,982:21,16,24,21
chr1	3352347	.	T	C	4129.58	PASS	AC=2;AF=0.965;AN=2;DP=7808;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:7228,667,0:0,0,147,76
chr1	3352503	.	G	C	7294.78	PASS	AC=2;AF=0.965;AN=2;DP=12181;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,368:371:99:9421,1037,0:1,2,153,215
chr1	3352541	.	T	C	5234.77	PASS	AC=2;AF=0.833;AN=2;DP=8531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,266:266:99:8380,796,0:0,0,97,169
chr1	3352579	.	T	C	3752.35	PASS	AC=2;AF=0.965;AN=2;DP=5733;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:5281,453,0:0,0,47,104
chr1	3352763	.	CTT	CT,C	3376.53	PASS	AC=2,0;AF=0.953,0.012;AN=2;DP=2973;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:63:99:0,0,36,27
chr1	3352784	.	A	G	3981.18	PASS	AC=2;AF=0.965;AN=2;DP=3084;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:3237,226,0:0,0,45,27
chr1	3352788	.	C	T	1012.66	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0.927;FractionInformativeReads=0.973;MQ=60;MQRankSum=0.416;QD=13.5;ReadPosRankSum=0.804;SOR=0.542;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:1041,0,979:22,11,25,15
chr1	3352865	.	C	T	1698.62	PASS	AC=1;AF=0.5;AN=2;DP=1460;MQ=60;set=variant5-variant7-variant8-variant15-variant17-variant18-variant20-variant22-variant25-variant27-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1629,0,1555:34,31,38,28
chr1	3353750	.	C	T	1849.58	PASS	AC=1;AF=0.625;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant15-variant28-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:59,75:134:99:1878,0,1452:29,30,32,43
chr1	3353890	.	A	G	2087.8	PASS	AC=2;AF=0.965;AN=2;DP=3842;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3122,296,0:0,0,49,50
chr1	3353949	.	A	G	2356.88	PASS	AC=2;AF=0.965;AN=2;DP=4109;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3725,326,0:0,0,56,53
chr1	3354595	.	T	C	5468.96	PASS	AC=2;AF=0.965;AN=2;DP=5000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:6119,433,0:0,0,66,76
chr1	3354615	.	T	C	5568.17	PASS	AC=2;AF=0.965;AN=2;DP=4971;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:6055,418,0:0,0,71,65
chr1	3383038	.	G	A	426.45	PASS	AC=1;AF=0.565;AN=2;DP=389;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant23-variant25-variant27-variant30-variant35-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:59:307,0,59:1,2,1,8
chr1	3383593	.	G	T	1354.59	PASS	AC=2;AF=0.953;AN=2;DP=3314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2243,218,0:0,0,46,27
chr1	3383665	.	G	A	2730.25	PASS	AC=2;AF=0.953;AN=2;DP=5880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4854,443,0:0,0,90,58
chr1	3383898	.	A	G	1913.72	PASS	AC=2;AF=0.953;AN=2;DP=3186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2557,236,0:0,0,23,56
chr1	3385250	.	C	A	1361.15	PASS	AC=1;AF=0.671;AN=2;DP=1625;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:776,0,778:21,6,21,10
chr1	3385330	.	T	C	3150.19	PASS	AC=2;AF=1;AN=2;DP=5133;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4750,466,0:0,0,86,70
chr1	3389727	.	C	T	1141.08	PASS	AC=2;AF=0.952;AN=2;DP=4608;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3150,331,0:0,0,61,50
chr1	3390238	.	T	A	3745.3	PASS	AC=2;AF=1;AN=2;DP=5680;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3902,382,0:0,0,47,81
chr1	3394456	.	T	C	1881.94	PASS	AC=2;AF=1;AN=2;DP=3763;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3095,261,0:0,0,43,44
chr1	3394640	.	A	G	3232.56	PASS	AC=2;AF=0.988;AN=2;DP=5562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,164:165:99:4912,453,0:1,0,63,101
chr1	3394674	.	T	C	1804.3	PASS	AC=2;AF=1;AN=2;DP=3551;FS=0;MQ=60;MQRankSum=0.554;ReadPosRankSum=1.661;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3446,305,0:0,0,26,76
chr1	3395039	.	G	A	6477.59	PASS	AC=2;AF=0.94;AN=2;DP=12732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,351:353:99:10454,1007,0:1,1,167,184
chr1	3395229	.	T	C	716.23	PASS	AC=2;AF=1;AN=2;DP=1143;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:876,77,0:0,0,6,20
chr1	3395973	.	ACC	A	3390.47	PASS	AC=2;AF=0.952;AN=2;DP=4570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:5773,395,0:0,0,78,53
chr1	3396609	.	C	T	942.84	PASS	AC=2;AF=0.952;AN=2;DP=1364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1184,96,0:0,0,5,27
chr1	3397188	.	T	C	4270.55	PASS	AC=2;AF=1;AN=2;DP=7570;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:7046,682,0:0,0,106,122
chr1	3397415	.	C	CCT	3504.79	PASS	AC=2;AF=1;AN=2;DP=4067;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:5533,382,0:0,0,58,67
chr1	3397455	.	G	A	2015.75	PASS	AC=2;AF=0.952;AN=2;DP=3070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,110:111:99:3135,319,0:0,1,52,58
chr1	3397564	.	C	T	795.96	PASS	AC=2;AF=0.952;AN=2;DP=1841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1697,184,0:0,0,26,36
chr1	3413426	.	A	G	611.72	PASS	AC=1;AF=0.528;AN=2;DP=592;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:755,0,445:8,7,11,11
chr1	3414105	.	C	T	1594.84	PASS	AC=2;AF=0.722;AN=2;DP=4219;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,211:212:99:6219,622,0:1,0,97,114
chr1	3416449	.	C	A	2846.6	PASS	AC=2;AF=0.845;AN=2;DP=3942;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3434,355,0:0,0,56,63
chr1	3416758	.	A	G	62.99	PASS	AC=2;AF=0.97;AN=2;DP=202;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:136,12,0:0,0,1,3
chr1	3417131	.	A	G	4143.91	PASS	AC=2;AF=0.898;AN=2;DP=7206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,237:237:99:7234,710,0:0,0,126,111
chr1	3417960	.	G	A	2286.88	PASS	AC=2;AF=0.845;AN=2;DP=4198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,141:142:99:3954,413,0:0,1,55,86
chr1	3418565	.	T	C	1653.24	PASS	AC=2;AF=0.961;AN=2;DP=2424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2831,264,0:0,0,30,58
chr1	3418613	.	CCG	C	709.54	PASS	AC=1;AF=0.523;AN=2;DP=699;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant16-variant17-variant23-variant24-variant25-variant29-variant30-variant32-variant33-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,43:56:99:1717,0,523:7,6,11,32
chr1	3418616	.	G	A	718.55	PASS	AC=1;AF=0.5;AN=2;DP=689;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant16-variant17-variant23-variant24-variant25-variant29-variant30-variant32-variant33-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,43:59:99:1748,0,554:9,7,11,32
chr1	3418618	.	G	A	718.55	PASS	AC=1;AF=0.5;AN=2;DP=704;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant16-variant17-variant23-variant24-variant25-variant29-variant30-variant32-variant33-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,41:60:99:1748,0,554:11,8,11,30
chr1	3421625	.	ACACCGGTAGCAAGGCAC	A	1605.41	PASS	AC=1;AF=0.5;AN=2;DP=948;MQ=60;set=variant3-variant7-variant8-variant11-variant15-variant16-variant28-variant29-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:69,48:117:99:1844,0,3766:44,25,26,22
chr1	3421658	.	A	T	1856.48	PASS	AC=1;AF=0.565;AN=2;DP=2247;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,46:114:99:1767,0,3589:41,27,24,22
chr1	3432278	.	C	G	332.99	PASS	AC=1;AF=0.5;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant15-variant23-variant27-variant30-variant33-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:539,0,500:5,14,9,13
chr1	3440647	.	T	C	1815.65	PASS	AC=2;AF=0.92;AN=2;DP=3171;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2527,228,0:0,0,49,27
chr1	3440943	.	A	C	104.17	PASS	AC=1;AF=0.5;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant13-variant15-variant23-variant27-variant30-variant33-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:488,0,471:4,12,2,12
chr1	3447914	.	G	C	151.87	PASS	AC=1;AF=0.673;AN=2;DP=555;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:427,0,206:6,4,9,9
chr1	3477414	.	GGGCT	G	580.51	PASS	AC=1;AF=0.625;AN=2;DP=492;MQ=60;set=variant6-variant8-variant10-variant11-variant12-variant15-variant19-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:11,26:37:99:1059,0,568:2,9,7,19
chr1	3496328	.	T	C	1270.13	PASS	AC=2;AF=0.943;AN=2;DP=1876;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1615,146,0:0,0,37,12
chr1	3496479	.	T	C	3123.75	PASS	AC=2;AF=0.955;AN=2;DP=5379;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4220,401,0:0,0,67,67
chr1	3518857	.	A	C	271.38	PASS	AC=2;AF=0.989;AN=2;DP=471;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:620,45,0:0,0,13,2
chr1	3518937	.	G	A	1649.33	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=6.055;FractionInformativeReads=1;MQ=60;MQRankSum=-0.46;QD=24.62;ReadPosRankSum=-0.59;SOR=0.213;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:25,42:67:99:1678,0,923:21,4,29,13
chr1	3518944	.	T	C	1579.37	PASS	AC=1;AF=0.705;AN=2;DP=1947;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,45:71:99:1757,0,936:21,5,30,15
chr1	3527944	.	C	G	2126.01	PASS	AC=1;AF=0.966;AN=2;DP=3145;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,46:84:99:1222,0,879:17,21,18,28
chr1	3528082	.	T	C	740.88	PASS	AC=2;AF=0.989;AN=2;DP=1687;FS=0;MQ=60;MQRankSum=-0.905;ReadPosRankSum=0.358;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:835,84,0:0,0,9,19
chr1	3545175	.	GTTCTGGGAGCTCCTCCCCC	G	2754.17	PASS	AC=1;AF=0.857;AN=2;DP=4161;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,57:110:99:1447,0,8424:26,27,29,28
chr1	3546264	.	CCGGG	C	427.59	PASS	AC=1;AF=0.621;AN=2;DP=440;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:266,0,354:5,1,5,2
chr1	3548136	.	T	C	1994.12	PASS	AC=1;AF=0.845;AN=2;DP=3769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1150,0,1501:30,27,17,28
chr1	3563428	.	C	T	1977.36	PASS	AC=1;AF=0.571;AN=2;DP=1500;MQ=60;set=variant2-variant4-variant5-variant9-variant15-variant16-variant17-variant18-variant19-variant29-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,57:126:99:1400,0,1823:29,40,21,36
chr1	3563512	.	GC	G	175.71	PASS	AC=2;AF=0.689;AN=2;DP=877;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1450,108,0:0,0,4,32
chr1	3566625	.	AGCAGGCTG	A	2435.27	PASS	AC=1;AF=0.603;AN=2;DP=3918;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,77:148:99:2937,0,2730:30,41,33,44
chr1	3566631	.	C	A	1538.61	PASS	AC=1;AF=0.5;AN=2;DP=148;FS=0.618;FractionInformativeReads=0.98;MQ=60;MQRankSum=-0.311;QD=10.4;ReadPosRankSum=0.053;SOR=0.761;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:77,68:145:99:1567,0,2946:33,44,28,40
chr1	3566706	.	G	A	2038.47	PASS	AC=2;AF=0.909;AN=2;DP=1846;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1856,156,0:0,0,10,41
chr1	3598900	.	G	A	2567.32	PASS	AC=1;AF=0.614;AN=2;DP=3504;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant25-variant28-variant34-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:102,106:208:99:3966,0,5163:51,51,53,53
chr1	3598910	.	C	T	2603.3	PASS	AC=1;AF=0.614;AN=2;DP=3450;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant25-variant28-variant34-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:102,98:200:99:3701,0,5207:50,52,49,49
chr1	3607160	.	G	A	116.96	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant15-variant18-variant20-variant28	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:325,0,555:12,5,9,5
chr1	3607532	.	G	A	1787.94	PASS	AC=1;AF=0.5;AN=2;DP=3253;MQ=60;set=variant-variant3-variant5-variant6-variant13-variant14-variant15-variant18-variant20-variant27-variant28-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:161,115:276:99:2780,0,4280:78,83,57,58
chr1	3638674	.	C	T	4834.06	PASS	AC=1;AF=0.932;AN=2;DP=11405;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:153,166:319:99:3857,0,3869:65,88,74,92
chr1	3640085	.	C	G	357.88	PASS	AC=1;AF=0.886;AN=2;DP=1275;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:431,0,477:6,17,6,14
chr1	3640134	.	TCTGC	T	232.97	PASS	AC=1;AF=0.886;AN=2;DP=798;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:368,0,686:1,13,1,9
chr1	3644349	.	A	G	2276.64	PASS	AC=1;AF=0.852;AN=2;DP=3970;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,57:105:99:2086,0,1890:18,30,20,37
chr1	3644374	.	A	G	1634.88	PASS	AC=1;AF=0.852;AN=2;DP=2547;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,43:67:99:1771,0,1247:6,18,15,28
chr1	3645835	.	C	A	390.74	PASS	AC=1;AF=0.791;AN=2;DP=1106;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:596,0,375:5,1,10,4
chr1	3645844	.	G	A	390.74	PASS	AC=1;AF=0.83;AN=2;DP=1295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:572,0,409:6,2,11,5
chr1	3646137	.	C	T	4166.65	PASS	AC=1;AF=0.791;AN=2;DP=6258;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,90:157:99:2225,0,1487:33,34,41,49
chr1	3646192	.	G	A	5059.29	PASS	AC=1;AF=0.83;AN=2;DP=5818;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,81:135:99:2979,0,1838:28,26,41,40
chr1	3646214	.	T	C	5033.4	PASS	AC=1;AF=0.852;AN=2;DP=5618;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,80:142:99:2942,0,2143:33,29,38,42
chr1	3646291	.	G	A	2345.98	PASS	AC=1;AF=0.83;AN=2;DP=4402;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1625,0,1448:29,33,34,32
chr1	3647962	.	T	C	1746.15	PASS	AC=1;AF=0.83;AN=2;DP=2445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:918,0,754:17,13,21,15
chr1	3651098	.	C	T	1764.72	PASS	AC=1;AF=0.791;AN=2;DP=3577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,51:90:99:1293,0,1048:19,20,31,20
chr1	3651126	.	G	T	1650.27	PASS	AC=1;AF=0.791;AN=2;DP=3952;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1239,0,1057:24,19,31,19
chr1	3651318	.	A	G	2327.96	PASS	AC=1;AF=0.83;AN=2;DP=4384;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,68:126:99:1779,0,1602:27,31,29,39
chr1	3652822	.	C	G	341.9	PASS	AC=1;AF=0.81;AN=2;DP=510;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:190,0,212:4,4,3,5
chr1	3683690	.	A	C	137.38	PASS	AC=2;AF=0.671;AN=2;DP=1021;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:786,60,0:0,0,18,2
chr1	3686415	.	C	T	2274	PASS	AC=1;AF=0.5;AN=2;DP=1284;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant15-variant17-variant24-variant25-variant33	GT:AD:DP:GQ:PL:SB	0/1:93,115:208:99:3012,0,2207:39,54,45,70
chr1	3688030	.	C	G	1107.88	PASS	AC=1;AF=0.5;AN=2;DP=1002;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant17-variant24-variant25-variant33	GT:AD:DP:GQ:PL:SB	0/1:74,52:126:99:1223,0,1861:34,40,25,27
chr1	3688324	.	T	A	182.63	PASS	AC=1;AF=0.5;AN=2;DP=204;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant20-variant21-variant31-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:338,0,374:3,10,5,8
chr1	3689852	.	C	T	756.56	PASS	AC=1;AF=0.5;AN=2;DP=504;MQ=60;set=variant3-variant4-variant6-variant8-variant12-variant15-variant20-variant21-variant31-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:750,0,782:9,20,9,19
chr1	3692240	.	T	C	635.35	PASS	AC=2;AF=0.655;AN=2;DP=1571;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2028,159,0:0,0,25,28
chr1	3692241	.	G	A	673.26	PASS	AC=1;AF=0.5;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:442,0,804:14,15,11,12
chr1	3692749	.	G	T	391.51	PASS	AC=1;AF=0.5;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant19-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:425,0,1017:3,13,1,11
chr1	3692750	.	C	T	391.51	PASS	AC=1;AF=0.5;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant19-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:425,0,1017:3,13,1,11
chr1	3696763	.	C	CAG	877.32	PASS	AC=1;AF=0.5;AN=2;DP=321;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,31:45:99:1342,0,895:11,3,24,7
chr1	3696770	.	T	C	904.43	PASS	AC=1;AF=0.5;AN=2;DP=383;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant23-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,39:54:99:1488,0,901:11,4,29,10
chr1	3696890	.	A	C	1082.19	PASS	AC=2;AF=0.671;AN=2;DP=4186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4584,444,0:0,0,79,69
chr1	3697035	.	A	G	3259.93	PASS	AC=1;AF=0.5;AN=2;DP=2477;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:183,181:364:99:4465,0,4297:105,78,104,77
chr1	3698017	.	G	A	757.92	PASS	AC=1;AF=0.5;AN=2;DP=419;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant23-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:591,0,864:13,13,7,14
chr1	3698224	.	G	C	455.49	PASS	AC=1;AF=0.5;AN=2;DP=328;MQ=60;set=variant7-variant9-variant13-variant15-variant17-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:469,0,719:11,15,6,10
chr1	3700430	.	G	T	540.06	PASS	AC=1;AF=0.5;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,12:43:99:280,0,740:17,14,4,8
chr1	3701491	.	A	G	64.2	PASS	AC=2;AF=0.7;AN=2;DP=593;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:581,42,0:0,0,13,1
chr1	3701580	.	G	C	740.29	PASS	AC=1;AF=0.5;AN=2;DP=434;MQ=60;set=variant7-variant9-variant13-variant15-variant23-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:665,0,782:19,11,18,10
chr1	3701663	.	T	C	1011.44	PASS	AC=1;AF=0.5;AN=2;DP=780;MQ=60;set=variant7-variant9-variant13-variant15-variant23-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,45:114:99:991,0,1582:38,31,25,20
chr1	3701832	.	C	A	446.81	PASS	AC=1;AF=0.5;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant15-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:533,0,668:10,16,8,16
chr1	3713077	.	G	T	575.3	PASS	AC=1;AF=0.5;AN=2;DP=577;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant12-variant15-variant20-variant21-variant31-variant36	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:521,0,931:18,21,14,13
chr1	3729169	.	C	G	2334.27	PASS	AC=2;AF=0.73;AN=2;DP=2485;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2721,252,0:0,0,26,59
chr1	3729587	.	A	G	906.94	PASS	AC=1;AF=0.645;AN=2;DP=1508;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,35:39:36:957,0,36:3,1,20,15
chr1	3729637	.	T	C	353.98	PASS	AC=1;AF=0.5;AN=2;DP=502;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant24-variant25-variant29-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:859,0,624:15,14,20,17
chr1	3729831	.	T	TC	127.19	PASS	AC=1;AF=0.5;AN=2;DP=84;MQ=60;set=variant2-variant9-variant13-variant15-variant24-variant25-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:152,0,128:1,4,1,4
chr1	3730435	.	T	C	2496.48	PASS	AC=2;AF=0.724;AN=2;DP=3103;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3185,241,0:0,0,73,7
chr1	3731654	.	C	CT	2162.82	PASS	AC=2;AF=0.718;AN=2;DP=3093;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:4240,307,0:0,0,55,46
chr1	3731657	.	C	T	726.33	PASS	AC=1;AF=0.5;AN=2;DP=798;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant24-variant25-variant29-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,44:94:99:1294,0,1308:27,23,25,19
chr1	3731959	.	C	T	5102.74	PASS	AC=1;AF=0.5;AN=2;DP=2123;MQ=60;set=variant7-variant13-variant15-variant24-variant25-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:236,183:419:99:6693,0,10863:112,124,86,97
chr1	3731965	.	G	A	3245.28	PASS	AC=1;AF=0.5;AN=2;DP=3363;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant24-variant25-variant29-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:242,181:423:99:6588,0,11030:110,132,85,96
chr1	3732103	.	T	C	7093.25	PASS	AC=2;AF=0.724;AN=2;DP=9008;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,264:264:99:8036,792,0:0,0,110,154
chr1	3732172	.	C	T	2919.41	PASS	AC=2;AF=0.724;AN=2;DP=3837;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3706,343,0:0,0,34,81
chr1	3732596	.	G	T	1390.15	PASS	AC=2;AF=0.73;AN=2;DP=1628;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1503,135,0:0,0,32,13
chr1	3732639	.	T	A	2161.46	PASS	AC=2;AF=0.724;AN=2;DP=2929;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2576,249,0:0,0,51,32
chr1	3732707	.	T	C	2879.57	PASS	AC=2;AF=0.724;AN=2;DP=4495;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3766,383,0:0,0,67,61
chr1	3732782	.	T	C	3428.93	PASS	AC=2;AF=0.718;AN=2;DP=4990;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3906,369,0:0,0,62,61
chr1	3742257	.	C	T	245.82	PASS	AC=1;AF=0.5;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant24-variant25-variant29-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:518,0,800:20,1,15,0
chr1	3743109	.	A	G	1678.54	PASS	AC=2;AF=0.724;AN=2;DP=1794;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2532,174,0:0,0,45,13
chr1	3743132	.	T	C	2467.58	PASS	AC=2;AF=0.736;AN=2;DP=2517;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3636,250,0:0,0,64,17
chr1	3743151	.	G	A	930.18	PASS	AC=1;AF=0.5;AN=2;DP=946;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant24-variant25-variant29-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,62:105:99:1670,0,1324:37,6,40,22
chr1	3743319	.	G	A	6440.92	PASS	AC=2;AF=0.543;AN=2;DP=4509;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant24-variant25-variant29-variant31-variant33-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:6616,658,0:0,0,95,125
chr1	3743433	.	T	TG	2718.13	PASS	AC=2;AF=0.909;AN=2;DP=2689;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2087,177,0:0,0,16,43
chr1	3745787	.	T	C	2025.52	PASS	AC=2;AF=0.724;AN=2;DP=3458;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:2969,308,0:0,0,59,44
chr1	3746254	.	T	C	900.02	PASS	AC=2;AF=0.989;AN=2;DP=896;MQ=60;MQRankSum=-1.288;ReadPosRankSum=-1.111;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1293,99,0:0,0,28,5
chr1	3746589	.	C	G	1765.47	PASS	AC=2;AF=0.989;AN=2;DP=1546;FractionInformativeReads=1;MQ=60;MQRankSum=1.168;ReadPosRankSum=0.526;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1608,156,0:0,0,21,31
chr1	3746710	.	C	T	36.49	PASS	AC=1;AF=0.643;AN=2;DP=35;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant15-variant25-variant29-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:64:162,0,64:0,2,0,4
chr1	3747603	.	T	C	885.15	PASS	AC=2;AF=0.989;AN=2;DP=1043;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:833,69,0:0,0,19,4
chr1	3751728	.	G	GT	299.74	PASS	AC=2;AF=0.583;AN=2;DP=372;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant13-variant15-variant19-variant20-variant21-variant24-variant29-variant30-variant31-variant33-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:384,44,0:0,0,3,12
chr1	3752857	.	A	G	186.98	PASS	AC=2;AF=0.563;AN=2;DP=153;set=variant2-variant3-variant4-variant7-variant8-variant9-variant13-variant15-variant19-variant20-variant21-variant25-variant29-variant31-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,6,2
chr1	3752868	.	CAAAA	CAA,CA,C,CAAA	200.71	PASS	AC=2,0,0,0;AF=0.357,0.381,0.012,0.024;AN=2;DP=491;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:12:3:1,0,9,2
chr1	3753013	.	G	C	1752.72	PASS	AC=2;AF=0.545;AN=2;DP=1262;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant24-variant25-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1968,186,0:0,0,37,25
chr1	3753032	.	GTT	GTTTT,GTTT,GTTTTT,GT,G,GTTTTTT	220.48	PASS	AC=0,1,0,0,0,0;AF=0.104,0.313,0.021,0.063,0.021,0.021;AN=2;DP=1516;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-filterInvariant22-variant25-filterInvariant28-variant31-variant33-filterInvariant35-variant38-variant40-filterInvariant44	GT:DP:GQ:SB	0/2:33:99:10,6,5,12
chr1	3755675	.	T	C	2416.4	PASS	AC=2;AF=0.989;AN=2;DP=6954;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6096,603,0:0,0,87,114
chr1	3759784	.	A	G	2690.8	PASS	AC=2;AF=0.989;AN=2;DP=3906;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3303,330,0:0,0,46,64
chr1	3761465	.	T	A	1511.1	PASS	AC=1;AF=0.5;AN=2;DP=1226;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant12-variant15-variant20-variant21-variant31-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,63:103:99:1546,0,915:20,20,32,31
chr1	3761650	.	A	G	1165.07	PASS	AC=2;AF=0.989;AN=2;DP=1621;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1388,135,0:0,0,16,29
chr1	3765055	.	C	T	573.93	PASS	AC=2;AF=0.545;AN=2;DP=218;FS=0;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant31-variant33-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:440,30,0:0,0,10,0
chr1	3765095	.	CA	CAAAA,C,CAA,CAAAAAAA,CAAAAAA,CAAAAA,CAAAAAAAAAA	207.8	PASS	AC=0,1,0,0,0,0,0;AF=0.032,0.145,0.032,0.032,0.226,0.081,0.016;AN=2;DP=706;set=variant-filterInvariant2-filterInvariant3-variant4-variant7-filterInvariant10-variant12-variant13-filterInvariant15-variant16-variant17-variant19-filterInvariant22-variant23-filterInvariant24-variant25-variant26-variant28-variant29-variant31-variant32-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:DP:GQ:SB	0/2:39:99:18,11,7,3
chr1	3765424	.	G	T	655.77	PASS	AC=1;AF=0.5;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant24-variant25-variant29-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:575,0,439:4,12,7,16
chr1	3769033	.	A	T	4280.97	PASS	AC=2;AF=0.542;AN=2;DP=2238;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:4746,325,0:0,0,42,66
chr1	3769034	.	A	T	4280.97	PASS	AC=2;AF=0.542;AN=2;DP=2204;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:4746,325,0:0,0,40,65
chr1	3773380	.	GCCCGCGC	G	1007.69	PASS	AC=2;AF=0.542;AN=2;DP=463;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:673,45,0:0,0,9,6
chr1	3773546	.	A	C	1251.05	PASS	AC=2;AF=0.542;AN=2;DP=889;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1239,122,0:0,0,25,16
chr1	3773718	.	A	G	2671.87	PASS	AC=2;AF=0.989;AN=2;DP=4568;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,119:120:99:5212,318,0:1,0,59,60
chr1	3773733	.	C	A	4705.16	PASS	AC=2;AF=0.542;AN=2;DP=2621;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,123:124:99:5195,361,0:0,1,63,60
chr1	3774130	.	A	G	8615.2	PASS	AC=2;AF=0.542;AN=2;DP=4802;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,231:233:99:10323,632,0:1,1,123,108
chr1	3774138	.	T	C	8733.54	PASS	AC=2;AF=0.542;AN=2;DP=4983;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,239:241:99:10457,641,0:1,1,127,112
chr1	3774296	.	A	G	2248.58	PASS	AC=2;AF=0.542;AN=2;DP=1669;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,91:92:99:2977,237,0:1,0,23,68
chr1	3774312	.	T	C	1700.61	PASS	AC=2;AF=0.542;AN=2;DP=1229;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2317,191,0:0,0,9,55
chr1	3775454	.	C	G	2696.93	PASS	AC=2;AF=0.989;AN=2;DP=4562;MQ=60;MQRankSum=-0.24;ReadPosRankSum=-2.182;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3865,353,0:0,0,38,80
chr1	3776989	.	C	T	150.04	PASS	AC=1;AF=0.5;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant13-variant15-variant24-variant25-variant27-variant29-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:284,0,307:8,0,7,1
chr1	3786612	.	C	T	410.47	PASS	AC=2;AF=0.74;AN=2;DP=220;MQ=60;set=variant4-variant7-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:337,36,0:0,0,5,7
chr1	3789194	.	G	GCGGCCC	1728.27	PASS	AC=2;AF=0.672;AN=2;DP=2337;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,56:59:87:1804,87,0:2,1,17,39
chr1	3789195	.	T	TGTCCCTGCCGC,TGTCCCTGCCAC	1728.27	PASS	AC=2,0;AF=0.656,0.016;AN=2;DP=2200;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:64:99:2,1,17,44
chr1	3789319	.	A	G	213.49	PASS	AC=2;AF=0.533;AN=2;DP=392;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant10-variant13-variant15-variant17-variant20-variant21-variant24-variant25-variant29-variant34-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:920,69,0:0,0,13,10
chr1	3789362	.	C	T	540	PASS	AC=2;AF=0.533;AN=2;DP=579;MQ=60;set=variant2-variant4-variant7-variant10-variant13-variant15-variant17-variant20-variant21-variant24-variant25-variant29-variant34-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:870,84,0:0,0,19,9
chr1	3801133	.	ATTTT	A,ATTTTT	673.38	PASS	AC=1,0;AF=0.25,0.25;AN=2;DP=77;MQ=60;set=variant15-variant29	GT:DP:GQ:SB	0/1:34:99:8,7,5,14
chr1	3801141	.	T	G	252.04	PASS	AC=2;AF=0.533;AN=2;DP=374;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant13-variant15-variant20-variant21-variant24-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:2,30:32:47:1122,47,0:1,1,11,19
chr1	3801973	.	T	C	154.41	PASS	AC=2;AF=0.571;AN=2;DP=232;MQ=60;set=variant2-variant4-variant7-variant9-variant13-variant15-variant20-variant21-variant24-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1048,96,0:0,0,10,22
chr1	3802018	.	T	C	71.96	PASS	AC=2;AF=0.615;AN=2;DP=100;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant13-variant15-variant20-variant21-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:530,39,0:0,0,2,11
chr1	3805963	.	A	G	1389.6	PASS	AC=1;AF=0.5;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:84,89:173:99:2365,0,2123:28,56,32,57
chr1	3806264	.	GAAAA	GA,GAAA,G,GAA	55.73	PASS	AC=0,0,0,1;AF=0.269,0.115,0.077,0.154;AN=2;DP=118;MQ=60;set=variant3-filterInvariant4-variant9-variant10-variant13-variant15-variant21-variant24-variant25-variant28-variant35-variant37-variant40	GT:DP:GQ:SB	0/4:9:74:3,1,5,0
chr1	3806643	.	T	A	1367.65	PASS	AC=2;AF=0.593;AN=2;DP=1869;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2992,276,0:0,0,31,61
chr1	3807122	.	G	A	5360.65	PASS	AC=2;AF=0.583;AN=2;DP=2697;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,205:206:99:6213,606,0:0,1,128,77
chr1	3807388	.	G	A	4323.32	PASS	AC=2;AF=0.583;AN=2;DP=2535;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5643,504,0:0,0,66,102
chr1	3807593	.	G	C	3277.02	PASS	AC=2;AF=1;AN=2;DP=4492;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,130:131:99:3883,381,0:1,0,63,67
chr1	3809164	.	G	A	40.51	PASS	AC=1;AF=0.55;AN=2;DP=70;FS=0;FractionInformativeReads=1;set=variant5-variant7-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant37	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:21:148,0,21:1,0,4,0
chr1	3809326	.	C	T	2412.93	PASS	AC=2;AF=0.583;AN=2;DP=2031;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3831,371,0:0,0,77,47
chr1	3816508	.	T	C	300.13	PASS	AC=2;AF=0.635;AN=2;DP=258;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:466,39,0:0,0,6,7
chr1	3816587	.	GC	G	1608.22	PASS	AC=2;AF=0.579;AN=2;DP=650;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:96:1427,96,0:0,0,22,7
chr1	3816598	.	A	C	1916.3	PASS	AC=2;AF=0.579;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,38:39:75:1671,75,0:1,0,25,13
chr1	3816604	.	G	A	1977.86	PASS	AC=2;AF=0.583;AN=2;DP=820;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,42:43:84:1804,84,0:1,0,28,14
chr1	3816683	.	A	G	3477.96	PASS	AC=2;AF=0.579;AN=2;DP=2469;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,123:124:99:3700,340,0:0,1,72,51
chr1	3816950	.	C	T	49.42	PASS	AC=2;AF=0.577;AN=2;DP=391;MQ=60;set=variant2-variant4-variant7-variant13-variant15-filterInvariant20-variant21-variant24-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1655,125,0:0,0,2,40
chr1	4714995	.	A	G	2110.01	PASS	AC=2;AF=0.675;AN=2;DP=1680;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant34-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1116,122,0:0,0,18,23
chr1	4772717	.	G	A	1872.01	PASS	AC=2;AF=0.763;AN=2;DP=3684;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,116:117:99:3787,339,0:0,1,32,84
chr1	4834606	.	T	C	2311.08	PASS	AC=1;AF=0.654;AN=2;DP=5301;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant32-variant35-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:129,123:252:99:3141,0,3180:60,69,50,73
chr1	4843531	.	G	A	115.27	PASS	AC=1;AF=0.921;AN=2;DP=85;FS=0;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant11-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant26-variant28-variant33-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:57:172,0,57:0,2,1,4
chr1	4847845	.	G	A	3069.62	PASS	AC=1;AF=0.762;AN=2;DP=13008;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:191,157:348:99:3683,0,4978:82,109,72,85
chr1	5873771	.	A	G	121.45	PASS	AC=2;AF=0.763;AN=2;DP=1037;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1234,112,0:0,0,20,18
chr1	5922834	.	C	A	663.6	PASS	AC=1;AF=0.525;AN=2;DP=1859;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,52:107:99:1214,0,1337:30,25,22,30
chr1	5923788	.	T	G	110.6	PASS	AC=2;AF=0.7;AN=2;DP=583;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:738,72,0:0,0,14,10
chr1	5925040	.	G	A	131.97	PASS	AC=1;AF=0.529;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:99:490,0,161:5,0,12,3
chr1	5925371	.	G	A	387.48	PASS	AC=1;AF=0.65;AN=2;DP=1130;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:384,0,578:8,14,5,10
chr1	5926507	.	T	C	211.24	PASS	AC=1;AF=0.645;AN=2;DP=2714;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1191,0,1067:21,30,30,26
chr1	5927031	.	A	G	539.72	PASS	AC=1;AF=0.528;AN=2;DP=970;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,40:60:99:1068,0,555:14,6,23,17
chr1	5927738	.	G	A	400.36	PASS	AC=1;AF=0.528;AN=2;DP=644;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:826,0,456:13,4,20,8
chr1	5934236	.	C	T	87.97	PASS	AC=1;AF=0.771;AN=2;DP=242;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant15-variant17-variant18-variant19-variant22-variant26-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:117,0,113:3,1,3,2
chr1	5934490	.	A	G	2104.42	PASS	AC=2;AF=0.713;AN=2;DP=5956;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5975,585,0:0,0,110,85
chr1	5934837	.	C	T	143.99	PASS	AC=2;AF=0.649;AN=2;DP=1033;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1244,108,0:0,0,21,15
chr1	5935162	.	A	T	617.04	PASS	AC=1;AF=0.774;AN=2;DP=4113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,57:141:99:1228,0,2102:38,46,25,32
chr1	5935222	.	T	C	527.56	PASS	AC=2;AF=0.648;AN=2;DP=1618;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2683,258,0:0,0,28,58
chr1	5937091	.	T	C	1532.33	PASS	AC=2;AF=0.943;AN=2;DP=3168;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2361,233,0:0,0,48,30
chr1	5937168	.	G	A	1023.47	PASS	AC=1;AF=0.617;AN=2;DP=3485;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,74:141:99:1783,0,1605:41,26,44,30
chr1	5937391	.	C	T	842.69	PASS	AC=2;AF=0.845;AN=2;DP=4673;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4587,446,0:0,0,64,85
chr1	5937413	.	A	C	864.78	PASS	AC=1;AF=0.609;AN=2;DP=2792;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,63:123:99:1709,0,1470:23,37,24,39
chr1	5939544	.	T	G	1909.86	PASS	AC=2;AF=0.845;AN=2;DP=5640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5136,518,0:0,0,85,88
chr1	5948677	.	G	A	533.39	PASS	AC=2;AF=0.845;AN=2;DP=3461;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2766,279,0:0,0,46,47
chr1	5964991	.	T	C	549.75	PASS	AC=2;AF=0.849;AN=2;DP=3065;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3092,258,0:0,0,17,69
chr1	6027167	.	C	A	563.35	PASS	AC=2;AF=0.75;AN=2;DP=1476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,42:43:99:1436,119,0:1,0,31,11
chr1	6027252	.	A	G	1369.9	PASS	AC=2;AF=0.737;AN=2;DP=3091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2821,267,0:0,0,58,31
chr1	6029086	.	CAA	CA,C,CAAA	233.73	PASS	AC=2,0,0;AF=0.7,0.025,0.013;AN=2;DP=1570;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:45:61:2,1,30,12
chr1	6038583	.	G	C	559.42	PASS	AC=2;AF=0.884;AN=2;DP=1845;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1878,147,0:0,0,8,41
chr1	6052581	.	G	A	974.21	PASS	AC=1;AF=0.841;AN=2;DP=4648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,59:140:99:1378,0,2166:41,40,32,27
chr1	6094450	.	AG	A	652.69	PASS	AC=1;AF=0.595;AN=2;DP=1780;MQ=60;set=variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1137,0,1498:28,19,24,14
chr1	6094594	.	T	G	2883.24	PASS	AC=2;AF=0.966;AN=2;DP=5351;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4633,470,0:0,0,77,81
chr1	6094800	.	G	A	1844.69	PASS	AC=1;AF=0.606;AN=2;DP=2131;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,44:68:99:1074,0,549:9,15,19,25
chr1	6100458	.	G	A	1410.29	PASS	AC=1;AF=0.615;AN=2;DP=912;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant32-variant33-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,17:49:99:413,0,1044:21,11,11,6
chr1	6145365	.	A	G	1924.69	PASS	AC=2;AF=0.703;AN=2;DP=2324;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2037,159,0:0,0,7,46
chr1	6148956	.	G	A	941.06	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=2.332;FractionInformativeReads=1;MQ=60;MQRankSum=-0.378;QD=7.02;ReadPosRankSum=-0.295;SOR=0.496;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:86,48:134:99:969,0,2389:53,33,27,21
chr1	6150637	.	C	T	942.45	PASS	AC=2;AF=0.645;AN=2;DP=1146;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1604,131,0:0,0,8,36
chr1	6155332	.	T	C	367.85	PASS	AC=2;AF=0.813;AN=2;DP=1183;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:944,78,0:0,0,20,6
chr1	6155535	.	A	C	1351.88	PASS	AC=1;AF=0.5;AN=2;DP=2340;set=filterInvariant3-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant12-filterInvariant15-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant26-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant35-variant36-filterInvariant39-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:99,29:128:99:701,0,2342:32,67,28,1
chr1	6155540	.	A	C	36.82	PASS	AC=1;AF=0.5;AN=2;DP=2554;set=filterInvariant-filterInvariant3-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant12-filterInvariant15-filterInvariant17-filterInvariant19-variant20-filterInvariant22-filterInvariant23-filterInvariant26-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant35-filterInvariant36-filterInvariant39-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:105,27:132:99:474,0,5943:35,70,27,0
chr1	6155550	.	T	C	45.8	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=219;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:110,15:125:99:417,0,6066:38,72,15,0
chr1	6157282	.	C	T	898.55	PASS	AC=2;AF=0.615;AN=2;DP=1424;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:2657,200,0:1,0,66,16
chr1	6157434	.	C	T	5624.79	PASS	AC=2;AF=0.655;AN=2;DP=7008;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,335:337:99:10174,958,0:1,1,173,162
chr1	6157993	.	T	C	2287.13	PASS	AC=2;AF=0.596;AN=2;DP=2516;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4353,422,0:0,0,73,68
chr1	6158562	.	A	G	5872.58	PASS	AC=2;AF=0.771;AN=2;DP=6184;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,240:241:99:7030,711,0:1,0,124,116
chr1	6159032	.	A	G	3269.35	PASS	AC=2;AF=0.8;AN=2;DP=4040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3546,342,0:0,0,59,55
chr1	6159136	.	G	T	1073.73	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0.662;FractionInformativeReads=1;MQ=60;MQRankSum=-0.053;QD=8.07;ReadPosRankSum=-3.14;SOR=0.813;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:82,51:133:99:1102,0,1972:41,41,24,27
chr1	6160563	.	A	G	4220.84	PASS	AC=2;AF=0.817;AN=2;DP=5439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4963,474,0:0,0,82,76
chr1	6160692	.	G	GC	4464.14	PASS	AC=2;AF=0.817;AN=2;DP=5522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,170:171:99:7552,510,0:1,0,79,91
chr1	6160698	.	A	G	4546.86	PASS	AC=2;AF=0.817;AN=2;DP=5443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,170:171:99:7663,519,0:1,0,81,89
chr1	6160876	.	A	G	3566.83	PASS	AC=2;AF=0.817;AN=2;DP=3829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3986,393,0:0,0,58,73
chr1	6160958	.	A	G	2786.05	PASS	AC=2;AF=0.817;AN=2;DP=2605;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2718,252,0:0,0,40,44
chr1	6161075	.	T	A	1882.89	PASS	AC=2;AF=0.771;AN=2;DP=2120;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2581,255,0:0,0,47,39
chr1	6161100	.	T	TA	1835.83	PASS	AC=2;AF=0.771;AN=2;DP=2162;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2674,243,0:0,0,41,40
chr1	6162054	.	T	C	3897.04	PASS	AC=2;AF=0.782;AN=2;DP=3708;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3454,314,0:0,0,41,64
chr1	6162583	.	G	A	2927.62	PASS	AC=2;AF=0.797;AN=2;DP=5036;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4951,483,0:0,0,77,85
chr1	6163135	.	C	T	2252.29	PASS	AC=2;AF=0.596;AN=2;DP=2828;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:6634,457,0:0,0,85,62
chr1	6163141	.	C	T	2420.23	PASS	AC=2;AF=0.596;AN=2;DP=2950;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:6648,460,0:0,0,88,65
chr1	6163584	.	C	T	3165.44	PASS	AC=2;AF=0.742;AN=2;DP=4816;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5055,537,0:0,0,88,92
chr1	6163925	.	C	T	2031	PASS	AC=2;AF=0.795;AN=2;DP=1979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2311,203,0:0,0,35,33
chr1	6164550	.	A	AGG	4096.8	PASS	AC=2;AF=0.742;AN=2;DP=3221;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:4236,295,0:0,0,52,46
chr1	6164686	.	C	A	1142.29	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,39:66:99:848,0,619:14,13,18,21
chr1	6164688	.	CAG	C	597.67	PASS	AC=1;AF=0.5;AN=2;DP=1002;set=variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-filterInvariant15-variant25-variant26-variant29-variant31-filterInvariant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,6:58:90:90,0,2229:21,31,6,0
chr1	6164690	.	G	GC,GCCC	112.35	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant-filterInvariant15	GT:DP:GQ:SB	0/2:53:90:18,29,6,0
chr1	6164694	.	A	C	111.55	PASS	AC=1;AF=0.5;AN=2;DP=1074;set=variant-filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant19-filterInvariant25-filterInvariant26-variant28-filterInvariant29-filterInvariant31-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,6:55:95:95,0,2231:19,30,6,0
chr1	6164698	.	T	C	88.15	PASS	AC=1;AF=0.5;AN=2;DP=1055;set=variant-filterInvariant2-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant10-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant19-filterInvariant25-filterInvariant26-variant28-filterInvariant29-variant31-filterInvariant36-variant37-filterInvariant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,6:56:96:96,0,2191:19,31,6,0
chr1	6164702	.	T	C	684.29	PASS	AC=1;AF=0.5;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=filterInvariant8-variant11-filterInvariant15-variant25-variant29-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:51,5:56:96:96,0,2191:20,31,5,0
chr1	6173408	.	G	A	383.76	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=1.503;FractionInformativeReads=1;MQ=60;MQRankSum=0.973;QD=12.38;ReadPosRankSum=-0.973;SOR=1.27;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:412,0,390:10,7,10,4
chr1	6185339	.	T	G	77.6	PASS	AC=1;AF=0.5;AN=2;DP=143;MQ=60;set=variant15-variant16-variant28-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,10:33:99:106,0,553:11,12,1,9
chr1	6186961	.	A	G	449.81	PASS	AC=2;AF=1;AN=2;DP=659;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:518,39,0:0,0,2,11
chr1	6239937	.	C	CG	3062.91	PASS	AC=2;AF=1;AN=2;DP=2786;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3027,247,0:0,0,47,32
chr1	6257897	.	A	G	938.84	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.824;FractionInformativeReads=1;MQ=60;MQRankSum=0.136;QD=11.05;ReadPosRankSum=-0.708;SOR=0.833;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:967,0,958:18,24,17,26
chr1	6272137	.	A	G	2044.73	PASS	AC=1;AF=0.6;AN=2;DP=5306;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,116:236:99:2864,0,2777:58,62,61,55
chr1	6278414	.	A	G	3677.96	PASS	AC=1;AF=0.696;AN=2;DP=2605;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,50:102:99:1290,0,1324:17,35,21,29
chr1	6279370	.	G	C	4054.38	PASS	AC=1;AF=0.614;AN=2;DP=2036;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant21-variant24-variant25-variant27-variant28-variant32-variant33-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,41:90:99:986,0,1315:23,26,21,20
chr1	6283547	.	GA	G	3497.68	PASS	AC=1;AF=0.6;AN=2;DP=2677;MQ=60;set=variant3-variant9-variant15-variant21-variant24-variant25-variant27-variant28-variant32-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,109:217:99:3239,0,3201:67,41,70,39
chr1	6305053	.	C	T	103.53	PASS	AC=2;AF=0.867;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant12-variant13-variant15-variant17-variant18-variant26-variant33-variant34-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:100,9,0:0,0,0,3
chr1	6305292	.	C	A	2193.57	PASS	AC=2;AF=0.708;AN=2;DP=2194;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,90:91:99:2724,262,0:0,1,47,43
chr1	6305303	.	C	A	2287.38	PASS	AC=2;AF=0.708;AN=2;DP=2149;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,84:86:99:2616,238,0:1,1,43,41
chr1	6307389	.	C	T	381.21	PASS	AC=2;AF=0.789;AN=2;DP=718;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:915,92,0:0,0,20,11
chr1	6308695	.	A	G	2045.73	PASS	AC=2;AF=0.731;AN=2;DP=2479;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2440,213,0:0,0,32,38
chr1	6309319	.	C	G	1832.33	PASS	AC=2;AF=0.736;AN=2;DP=2317;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,91:92:99:2930,234,0:0,1,46,45
chr1	6313938	.	C	T	3373.14	PASS	AC=2;AF=0.75;AN=2;DP=4354;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4228,404,0:0,0,67,69
chr1	6314349	.	A	G	483.91	PASS	AC=2;AF=0.797;AN=2;DP=783;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:813,66,0:0,0,6,16
chr1	6314479	.	C	T	1344.56	PASS	AC=2;AF=0.736;AN=2;DP=2602;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2616,239,0:0,0,57,23
chr1	6314822	.	T	C	3944.02	PASS	AC=2;AF=0.75;AN=2;DP=5555;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5719,546,0:0,0,91,91
chr1	6354665	.	T	A	187.49	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.2;QD=14.42;ReadPosRankSum=-1.369;SOR=0.892;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:216,0,123:4,2,5,2
chr1	6393445	.	A	G	485.2	PASS	AC=1;AF=0.5;AN=2;DP=345;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant17-variant22-variant25-variant26-variant28-variant36-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:666,0,495:14,7,17,8
chr1	6399711	.	A	G	1393.24	PASS	AC=1;AF=0.55;AN=2;DP=1715;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant21-variant22-variant25-variant26-variant28-variant31-variant36-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,34:84:99:903,0,1261:20,30,9,25
chr1	6399797	.	C	T	373.97	PASS	AC=1;AF=0.563;AN=2;DP=304;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant15-variant17-variant21-variant25-variant28-variant31-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:408,0,310:4,9,2,9
chr1	6420490	.	T	A	158.11	PASS	AC=1;AF=0.536;AN=2;DP=414;MQ=60;set=variant-variant4-variant7-variant10-variant15-variant17-variant21-variant22-variant25-variant26-variant31-variant36-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:795,0,623:16,4,20,10
chr1	6453520	.	C	CG	487.77	PASS	AC=2;AF=1;AN=2;DP=1186;FS=0;MQ=60;MQRankSum=-0.65;ReadPosRankSum=1.444;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1292,96,0:0,0,11,21
chr1	6453623	.	C	T	407.97	PASS	AC=1;AF=0.536;AN=2;DP=295;MQ=60;set=variant6-variant8-variant10-variant15-variant17-variant18-variant22-variant23-variant26-variant31-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:336,0,265:7,6,7,6
chr1	6453710	.	T	G	142.64	PASS	AC=1;AF=0.543;AN=2;DP=902;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant31-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,11:42:99:196,0,670:16,15,7,4
chr1	6453744	.	C	A	521.09	PASS	AC=1;AF=0.536;AN=2;DP=596;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant15-variant17-variant18-variant22-variant23-variant26-variant31-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,12:45:99:208,0,819:19,14,5,7
chr1	6476116	.	A	G	221.14	PASS	AC=1;AF=0.545;AN=2;DP=850;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:792,0,364:10,4,19,8
chr1	6476286	.	T	C	1164.99	PASS	AC=1;AF=0.55;AN=2;DP=843;MQ=60;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1434,0,1020:22,14,24,24
chr1	6476492	.	C	G	1510.39	PASS	AC=1;AF=0.55;AN=2;DP=1508;MQ=60;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,81:198:99:1928,0,3254:59,58,39,42
chr1	6477662	.	A	T	110.19	PASS	AC=1;AF=0.563;AN=2;DP=131;MQ=60;set=variant6-variant15-variant18-variant22-variant23-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:168,0,168:0,5,2,5
chr1	6479529	.	C	G	593.77	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:622,0,510:3,13,6,14
chr1	6479925	.	A	T	4136.56	PASS	AC=1;AF=0.55;AN=2;DP=2799;MQ=60;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:170,170:340:99:6338,0,7937:78,92,75,95
chr1	6479938	.	A	G	3295.15	PASS	AC=1;AF=0.536;AN=2;DP=3861;MQ=60;set=variant4-variant6-variant8-variant15-variant18-variant22-variant23-variant24-variant25-variant31-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,160:322:99:6156,0,7759:75,87,69,91
chr1	6484675	.	C	A	476.78	PASS	AC=1;AF=0.55;AN=2;DP=288;FractionInformativeReads=1;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,7:38:99:190,0,1507:12,19,3,4
chr1	6484685	.	G	A	498.51	PASS	AC=1;AF=0.55;AN=2;DP=275;FractionInformativeReads=1;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,6:37:99:190,0,1507:12,19,3,3
chr1	6484880	.	A	G	88.7	PASS	AC=1;AF=0.595;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant21-variant22-variant23-variant25-variant28-variant31-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:244,0,102:4,1,5,6
chr1	6489866	.	C	T	1023.39	PASS	AC=1;AF=0.556;AN=2;DP=513;FractionInformativeReads=1;set=variant6-variant8-variant15-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,23:59:99:583,0,1025:22,14,16,7
chr1	6500547	.	G	A	240.61	PASS	AC=1;AF=0.563;AN=2;DP=201;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:453,0,590:1,16,3,13
chr1	6500919	.	T	C	2027.54	PASS	AC=1;AF=0.523;AN=2;DP=3133;set=variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,100:176:99:2448,0,2038:39,37,49,51
chr1	6508122	.	G	C	1212.45	PASS	AC=1;AF=0.5;AN=2;DP=1410;MQ=60;set=variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant23-variant24-variant26-variant31-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1568,0,1405:30,30,30,35
chr1	6508267	.	C	G	248.87	PASS	AC=1;AF=0.536;AN=2;DP=236;set=variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant23-variant24-variant26-variant31-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:427,0,434:6,11,2,12
chr1	6508625	.	A	G	2972.62	PASS	AC=1;AF=0.5;AN=2;DP=2037;FractionInformativeReads=1;set=variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant23-variant24-variant26-variant31-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,70:171:99:2608,0,4730:52,49,40,30
chr1	6508633	.	G	T	2994.37	PASS	AC=1;AF=0.5;AN=2;DP=2161;FractionInformativeReads=1;set=variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant23-variant24-variant26-variant31-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,78:184:99:2761,0,4811:56,50,44,34
chr1	6508712	.	T	C	2099.15	PASS	AC=1;AF=0.5;AN=2;DP=2826;set=variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant23-variant24-variant26-variant31-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,108:231:99:2497,0,2780:60,63,52,56
chr1	6508872	.	C	T	417.58	PASS	AC=1;AF=0.5;AN=2;DP=672;FractionInformativeReads=1;set=variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant23-variant24-variant26-variant31-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:806,0,790:7,21,9,21
chr1	6511582	.	A	G	1267.14	PASS	AC=1;AF=0.5;AN=2;DP=2133;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant34-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,62:116:99:1830,0,1559:44,10,48,14
chr1	6520024	.	C	A	517.45	PASS	AC=1;AF=0.5;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant23-variant24-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:843,0,1056:25,14,19,20
chr1	6521150	.	A	C	368.56	PASS	AC=1;AF=0.5;AN=2;DP=1838;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant34-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,52:103:99:1155,0,1053:26,25,32,20
chr1	6525347	.	A	C	112.85	PASS	AC=1;AF=0.5;AN=2;DP=273;set=variant6-filterInvariant10-variant12-variant13-variant15-variant19-variant22-variant23-variant25-variant27-variant32-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:97:97,0,2275:1,11,5,0
chr1	6525351	.	T	C	61.31	PASS	AC=1;AF=0.5;AN=2;DP=162;set=variant3-variant6-variant12-variant15-variant25-variant27-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:88:88,0,2779:2,13,4,0
chr1	6525915	.	T	C	158.4	PASS	AC=1;AF=0.5;AN=2;DP=208;MQ=60;set=variant6-variant8-variant15-variant23-variant24-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:334,0,429:11,6,9,5
chr1	6526008	.	A	G	687.49	PASS	AC=1;AF=0.5;AN=2;DP=707;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant15-variant18-variant23-variant26-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:686,0,808:18,19,17,11
chr1	6526183	.	G	A	924.2	PASS	AC=1;AF=0.5;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant15-variant18-variant23-variant26-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:1002,0,1093:14,17,15,12
chr1	6526202	.	CCGTGCTCT	C	962.92	PASS	AC=1;AF=0.5;AN=2;DP=444;MQ=60;set=variant6-variant8-variant10-variant15-variant18-variant23-variant26-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:915,0,1188:12,18,12,12
chr1	6526240	.	GCGCC	G	931.33	PASS	AC=1;AF=0.5;AN=2;DP=373;MQ=60;set=variant6-variant8-variant10-variant15-variant18-variant23-variant26-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:910,0,724:7,12,12,12
chr1	6526319	.	C	T	442.08	PASS	AC=1;AF=0.5;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant23-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,41:81:99:937,0,1009:23,17,20,21
chr1	6526465	.	C	G	969.1	PASS	AC=1;AF=0.5;AN=2;DP=1136;MQ=60;set=variant6-variant8-variant10-variant15-variant18-variant23-variant26-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:1478,0,1494:33,35,33,33
chr1	6526633	.	G	A	76.4	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant15-variant18-variant23-variant26-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:361,0,142:1,4,1,9
chr1	6526857	.	TA	T,TAA	79.02	PASS	AC=1,0;AF=0.3,0.3;AN=2;DP=49;FS=0;MQ=60;set=variant10-variant12-variant15-variant16-variant29	GT:DP:GQ:SB	0/1:9:72:4,0,4,1
chr1	6527333	.	A	G	1638.56	PASS	AC=1;AF=0.5;AN=2;DP=3184;FractionInformativeReads=1;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant18-variant21-variant22-variant23-variant26-variant28-variant31-variant34-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,108:221:99:2480,0,2665:64,49,61,47
chr1	6527745	.	C	T	1372.37	PASS	AC=1;AF=0.5;AN=2;DP=1196;MQ=60;set=variant6-variant8-variant10-variant13-variant15-variant18-variant23-variant26-variant31-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:1549,0,1865:26,42,28,35
chr1	6528589	.	C	T	1508.09	PASS	AC=1;AF=0.5;AN=2;DP=1165;MQ=60;set=variant6-variant8-variant15-variant23-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,104:217:99:2471,0,2786:55,58,49,55
chr1	6529182	.	TTCCTCC	TTCC,T	1392.23	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=847;MQ=60;set=variant6-variant8-variant15-variant23-variant24-variant31-variant38-variant44	GT:DP:GQ:SB	0/1:114:99:24,30,22,38
chr1	6529443	.	A	G	929.12	PASS	AC=1;AF=0.5;AN=2;DP=3517;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant18-variant21-variant22-variant23-variant26-variant28-variant31-variant34-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,99:207:99:2436,0,2553:54,54,46,53
chr1	6529807	.	C	T	133.71	PASS	AC=1;AF=0.583;AN=2;DP=59;MQ=60;set=variant6-variant8-variant15-variant23-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:220,0,187:1,3,2,4
chr1	6530435	.	A	G	1418.24	PASS	AC=1;AF=0.5;AN=2;DP=1963;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant21-variant22-variant23-variant28-variant31-variant34-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1352,0,1548:29,32,24,28
chr1	6530965	.	C	CG	3491.46	PASS	AC=2;AF=1;AN=2;DP=5226;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4921,438,0:0,0,62,82
chr1	6531589	.	C	T	2158.61	PASS	AC=1;AF=0.5;AN=2;DP=1107;MQ=60;set=variant6-variant8-variant15-variant23-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,117:209:99:2811,0,2246:50,42,54,63
chr1	6531966	.	C	T	1021.42	PASS	AC=1;AF=0.5;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,42:101:99:1218,0,1796:12,47,6,36
chr1	6533393	.	G	C	2077.81	PASS	AC=1;AF=0.5;AN=2;DP=1976;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant26-variant28-variant31-variant34-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,57:112:99:1541,0,1404:26,29,26,31
chr1	6579607	.	C	T	1060.79	PASS	AC=1;AF=0.849;AN=2;DP=4428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,69:125:99:1690,0,1469:26,30,28,41
chr1	6579653	.	G	C	1041.69	PASS	AC=1;AF=0.542;AN=2;DP=1048;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,57:117:99:1483,0,1513:24,36,25,32
chr1	6579843	.	C	T	543.34	PASS	AC=1;AF=0.849;AN=2;DP=3133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:1031,0,679:16,13,20,15
chr1	6580236	.	G	C	225.3	PASS	AC=2;AF=1;AN=2;DP=342;FS=0;MQ=60;MQRankSum=0.747;ReadPosRankSum=0.747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:413,42,0:0,0,5,9
chr1	6580250	.	C	T	73.47	PASS	AC=1;AF=0.888;AN=2;DP=259;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:148,0,193:1,5,1,4
chr1	6581877	.	G	A	496.96	PASS	AC=1;AF=0.849;AN=2;DP=2012;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,34:52:99:864,0,439:7,11,17,17
chr1	6583183	.	C	T	507.97	PASS	AC=1;AF=0.542;AN=2;DP=450;FractionInformativeReads=1;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:842,0,727:20,4,24,3
chr1	6583231	.	G	A	1802.25	PASS	AC=1;AF=0.538;AN=2;DP=1526;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,56:119:99:1928,0,2138:35,28,33,23
chr1	6583232	.	A	G	1784.46	PASS	AC=1;AF=0.538;AN=2;DP=1536;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,56:121:99:1928,0,2138:35,30,33,23
chr1	6583270	.	C	G	2244.38	PASS	AC=1;AF=0.542;AN=2;DP=2183;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:115,102:217:99:2701,0,2855:70,45,61,41
chr1	6583701	.	T	C	124.46	PASS	AC=1;AF=0.872;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:419,0,174:6,1,10,5
chr1	6584024	.	A	G	3101.9	PASS	AC=2;AF=1;AN=2;DP=3147;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3001,264,0:0,0,59,29
chr1	6584045	.	C	G	1773.18	PASS	AC=1;AF=0.545;AN=2;DP=972;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1632,0,1616:41,18,36,17
chr1	6584101	.	A	G	2408.22	PASS	AC=1;AF=0.849;AN=2;DP=8120;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,128:245:99:3112,0,2958:72,45,79,49
chr1	6584311	.	G	GTA	6675.77	PASS	AC=2;AF=1;AN=2;DP=7025;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:8154,574,0:0,0,73,118
chr1	6584420	.	C	A	1026.38	PASS	AC=1;AF=0.542;AN=2;DP=783;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,51:95:99:1389,0,1199:15,29,18,33
chr1	6584657	.	T	C	400.2	PASS	AC=1;AF=0.542;AN=2;DP=630;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,36:78:99:848,0,1066:17,25,13,23
chr1	6584804	.	A	T	90.69	PASS	AC=1;AF=0.556;AN=2;DP=87;MQ=60;set=variant-variant2-variant15-variant23-variant30-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:62:62,0,162:2,3,1,2
chr1	6585021	.	A	G	727.76	PASS	AC=2;AF=1;AN=2;DP=828;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:863,72,0:0,0,20,4
chr1	6585539	.	C	T	877.11	PASS	AC=1;AF=0.86;AN=2;DP=3064;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:899,0,1222:24,26,19,17
chr1	6585804	.	C	T	2897.12	PASS	AC=1;AF=0.86;AN=2;DP=8502;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,121:233:99:2884,0,2823:58,54,63,58
chr1	6586070	.	C	T	3301.43	PASS	AC=2;AF=1;AN=2;DP=5460;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3891,377,0:0,0,46,80
chr1	6591937	.	T	C	231.21	PASS	AC=1;AF=0.86;AN=2;DP=1078;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:528,0,446:15,1,14,5
chr1	6592257	.	C	G	971.87	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.783;FractionInformativeReads=1;MQ=60;MQRankSum=-1.854;QD=10.34;ReadPosRankSum=-0.692;SOR=0.796;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:54,40:94:99:1000,0,1496:23,31,16,24
chr1	6592377	.	A	G	797.25	PASS	AC=1;AF=0.542;AN=2;DP=768;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1273,0,998:23,16,28,18
chr1	6593532	.	G	A	1034.81	PASS	AC=1;AF=0.542;AN=2;DP=951;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1179,0,1183:19,27,23,28
chr1	6601773	.	T	C	182.07	PASS	AC=1;AF=0.939;AN=2;DP=158;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:117,0,76:2,0,3,0
chr1	6602223	.	ATT	AT,A	196.32	PASS	AC=2,0;AF=0.893,0.036;AN=2;DP=571;FS=0;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:9:27:0,0,1,8
chr1	6602241	.	C	A	74.01	PASS	AC=1;AF=0.859;AN=2;DP=321;FS=0;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:150,0,195:1,4,0,4
chr1	6609559	.	C	A	381.53	PASS	AC=1;AF=0.826;AN=2;DP=998;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:444,0,594:13,2,12,0
chr1	6609563	.	CAT	C	538.95	PASS	AC=1;AF=0.531;AN=2;DP=418;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant14-variant15-variant18-variant22-variant23-variant30-variant31-variant32-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:592,0,541:14,1,13,3
chr1	6609792	.	G	GT	2295.51	PASS	AC=1;AF=0.536;AN=2;DP=1983;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,97:173:99:3096,0,2325:31,45,43,54
chr1	6609851	.	A	G	2564.77	PASS	AC=2;AF=1;AN=2;DP=3557;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2983,287,0:0,0,31,65
chr1	6609896	.	G	A	688.06	PASS	AC=1;AF=0.826;AN=2;DP=1731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:708,0,709:5,19,5,19
chr1	6610366	.	T	C	408.01	PASS	AC=1;AF=0.826;AN=2;DP=1166;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:286,0,565:14,2,8,1
chr1	6610382	.	C	T	629.57	PASS	AC=1;AF=0.826;AN=2;DP=1604;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:350,0,705:19,3,11,2
chr1	6610743	.	CT	CTT,C,CTTT	41.4	PASS	AC=0,1,0;AF=0.477,0.045,0.068;AN=2;DP=346;set=variant4-variant5-variant6-variant9-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant38-variant43	GT:DP:GQ:SB	0/2:16:99:1,8,2,5
chr1	6614188	.	C	T	863.3	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=2.069;FractionInformativeReads=0.986;MQ=60;MQRankSum=-1.443;QD=11.99;ReadPosRankSum=-1.351;SOR=1.047;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:40,31:71:99:892,0,946:24,16,21,10
chr1	6614230	.	G	A	1428.89	PASS	AC=1;AF=0.536;AN=2;DP=1135;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,49:100:99:1053,0,1160:29,22,28,21
chr1	6614391	.	A	C	3608.65	PASS	AC=2;AF=0.977;AN=2;DP=2981;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2376,177,0:0,0,28,28
chr1	6614415	.	A	G	3283.05	PASS	AC=2;AF=1;AN=2;DP=3048;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2407,177,0:0,0,30,28
chr1	6614535	.	G	A	954.05	PASS	AC=1;AF=0.826;AN=2;DP=4212;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,51:93:99:1295,0,924:22,20,22,29
chr1	6614653	.	C	G	237.44	PASS	AC=1;AF=0.826;AN=2;DP=970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:335,0,272:5,9,4,8
chr1	6615690	.	A	G	123.13	PASS	AC=1;AF=0.849;AN=2;DP=1388;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:705,0,1251:2,15,3,15
chr1	6615695	.	C	T	123.13	PASS	AC=1;AF=0.833;AN=2;DP=1257;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:708,0,1214:1,15,3,15
chr1	6631319	.	G	A	145.31	PASS	AC=2;AF=1;AN=2;DP=684;FS=0;MQ=60;MQRankSum=0.714;ReadPosRankSum=0.51;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:925,75,0:0,0,7,18
chr1	6635231	.	A	G	4317.86	PASS	AC=2;AF=1;AN=2;DP=8324;FS=0;MQ=60;MQRankSum=1.323;ReadPosRankSum=1.689;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:6665,594,0:0,0,122,76
chr1	6637171	.	G	A	675.39	PASS	AC=1;AF=0.536;AN=2;DP=609;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant18-variant22-variant23-variant27-variant30-variant31-variant32-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:805,0,937:7,25,9,20
chr1	6645867	.	G	A	177.37	PASS	AC=1;AF=0.682;AN=2;DP=487;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:171,0,438:11,3,5,2
chr1	6646959	.	GCCTGCCTTC	G	4676.85	PASS	AC=2;AF=0.833;AN=2;DP=6782;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:8342,571,0:0,0,73,115
chr1	6651450	.	CA	C	92.32	PASS	AC=1;AF=0.63;AN=2;DP=1035;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:479,0,603:10,13,11,8
chr1	6651728	.	C	T	583.89	PASS	AC=1;AF=0.66;AN=2;DP=1098;MQ=60;set=variant-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-filterInvariant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:360,0,625:13,13,9,7
chr1	6652718	.	G	A	556.05	PASS	AC=1;AF=0.615;AN=2;DP=1807;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,50:78:99:1262,0,680:15,13,20,30
chr1	6652745	.	G	A	644.1	PASS	AC=1;AF=0.63;AN=2;DP=1819;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,49:81:99:1214,0,774:17,15,20,29
chr1	6655053	.	G	A	94.66	PASS	AC=1;AF=0.765;AN=2;DP=138;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant10-variant12-variant15-variant17-variant19-variant29-variant33-variant34-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,155:4,1,2,0
chr1	6659505	.	G	A	1553.27	PASS	AC=1;AF=0.682;AN=2;DP=3511;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:113,75:188:99:1725,0,2839:44,69,29,46
chr1	6662913	.	G	A	1346.55	PASS	AC=1;AF=0.682;AN=2;DP=2213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,71:125:99:1671,0,1324:19,35,32,39
chr1	6663031	.	G	C	93.44	PASS	AC=1;AF=0.7;AN=2;DP=256;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant29-variant33-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:51:388,0,51:2,2,3,9
chr1	6673780	.	C	G	250.21	PASS	AC=1;AF=0.62;AN=2;DP=1037;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:480,0,964:17,21,12,9
chr1	6677064	.	A	G	166.78	PASS	AC=1;AF=0.69;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant29-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:333,0,344:1,10,2,9
chr1	6679848	.	C	T	884.41	PASS	AC=1;AF=0.62;AN=2;DP=1553;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,32:81:99:788,0,1181:27,22,18,14
chr1	6681375	.	C	T	1378.1	PASS	AC=1;AF=0.62;AN=2;DP=2331;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,41:116:99:1007,0,1888:48,27,28,13
chr1	6681744	.	C	T	1502.47	PASS	AC=2;AF=0.838;AN=2;DP=2635;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2755,256,0:0,0,40,46
chr1	6683240	.	G	A	470.26	PASS	AC=1;AF=0.667;AN=2;DP=1383;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:937,0,1038:21,23,15,23
chr1	6683565	.	GA	G	962.27	PASS	AC=2;AF=0.838;AN=2;DP=1437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:916,99,0:0,0,15,18
chr1	6684906	.	C	G	636.43	PASS	AC=1;AF=0.635;AN=2;DP=1506;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,39:66:99:931,0,679:14,13,24,15
chr1	6685442	.	A	G	679.65	PASS	AC=1;AF=0.833;AN=2;DP=741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:335,0,306:5,7,5,9
chr1	6690140	.	A	G	923.42	PASS	AC=1;AF=0.833;AN=2;DP=796;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:548,0,332:10,2,13,4
chr1	6692273	.	C	CA,CAA	252.53	PASS	AC=1,0;AF=0.671,0.013;AN=2;DP=642;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:33:99:16,3,9,5
chr1	6694513	.	G	T	1984.31	PASS	AC=1;AF=0.533;AN=2;DP=1342;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant21-variant23-variant24-variant27-variant33-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,64:130:99:2432,0,3703:35,31,32,32
chr1	6694514	.	A	T	1984.31	PASS	AC=1;AF=0.533;AN=2;DP=1341;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant21-variant23-variant24-variant27-variant33-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,64:129:99:2432,0,3703:34,31,32,32
chr1	6694863	.	C	T	1873.92	PASS	AC=1;AF=0.5;AN=2;DP=136;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.956;QD=13.78;ReadPosRankSum=0.442;SOR=0.67;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:66,70:136:99:1902,0,1815:26,40,28,42
chr1	6694927	.	C	T	999	PASS	AC=1;AF=0.635;AN=2;DP=2347;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,61:119:99:1589,0,1566:30,28,24,37
chr1	6694980	.	G	A	2050.71	PASS	AC=1;AF=0.813;AN=2;DP=3052;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,43:96:99:952,0,1266:26,27,17,26
chr1	6695123	.	C	T	933.68	PASS	AC=1;AF=0.825;AN=2;DP=1672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:420,0,840:13,13,9,7
chr1	6695244	.	A	G	775.01	PASS	AC=1;AF=0.825;AN=2;DP=1676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,43:66:99:1122,0,626:13,10,24,19
chr1	6695802	.	A	G	3501.87	PASS	AC=1;AF=0.825;AN=2;DP=4032;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,54:109:99:1353,0,1382:24,31,21,33
chr1	6704635	.	A	G	3168.36	PASS	AC=2;AF=0.943;AN=2;DP=6023;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:4895,506,0:0,0,82,87
chr1	6705874	.	G	C	2062.55	PASS	AC=1;AF=0.594;AN=2;DP=2204;MQ=60;set=variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant21-variant23-variant24-variant27-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,81:150:99:1976,0,1903:44,25,47,34
chr1	6713114	.	C	T	272.91	PASS	AC=1;AF=0.635;AN=2;DP=712;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:323,0,321:3,7,1,9
chr1	6866978	.	G	A	366.29	PASS	AC=1;AF=0.688;AN=2;DP=897;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:211,0,261:7,1,6,2
chr1	6867276	.	T	C	539.66	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:6,17:23:99:568,0,108:2,4,2,15
chr1	6946397	.	TA	T	331.15	PASS	AC=1;AF=0.5;AN=2;DP=108;MQ=60;set=variant15-variant18-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:368,0,366:6,9,5,10
chr1	6947717	.	C	T	929.22	PASS	AC=1;AF=0.55;AN=2;DP=810;MQ=60;set=variant5-variant8-variant12-variant15-variant18-variant20-variant23-variant28-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:54,44:98:99:1137,0,1376:25,29,28,16
chr1	6947973	.	C	T	289.03	PASS	AC=1;AF=0.55;AN=2;DP=423;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant12-variant15-variant18-variant20-variant23-variant28-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:348,0,701:12,15,6,10
chr1	7151479	.	T	C	1381.15	PASS	AC=1;AF=0.571;AN=2;DP=1659;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant10-variant11-variant15-variant16-variant17-variant18-variant23-variant27-variant29-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,67:142:99:1507,0,1938:30,45,33,34
chr1	7201935	.	G	T	208.12	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.077;QD=7.71;ReadPosRankSum=-1.517;SOR=0.836;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:236,0,515:13,5,7,2
chr1	7289606	.	T	G,A	239.08	PASS	AC=2,0;AF=0.986,0.014;AN=2;DP=232;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:4:15:0,0,4,0
chr1	7289612	.	T	G	239.08	PASS	AC=2;AF=1;AN=2;DP=266;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,5,0
chr1	7289619	.	G	A	230.83	PASS	AC=2;AF=1;AN=2;DP=314;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:215,15,0:0,0,5,0
chr1	7289777	.	G	A	887.36	PASS	AC=1;AF=0.77;AN=2;DP=2999;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,44:113:99:925,0,1593:36,33,24,20
chr1	7289959	.	A	G	61.77	PASS	AC=1;AF=0.87;AN=2;DP=150;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant22-variant24-variant25-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:151,0,152:0,4,2,3
chr1	7737799	.	A	G	802.62	PASS	AC=2;AF=0.657;AN=2;DP=4133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3948,330,0:1,0,39,82
chr1	7826313	.	A	AT	619.2	PASS	AC=2;AF=0.806;AN=2;DP=782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:600,63,0:0,0,17,4
chr1	7826347	.	C	T	1229.57	PASS	AC=2;AF=0.909;AN=2;DP=1692;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,39:40:99:1366,110,0:1,0,29,10
chr1	7827903	.	C	CA,CAA,CAAA	692.23	PASS	AC=1,1,0;AF=0.085,0.756,0.073;AN=2;DP=1252;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:19:98:0,0,11,8
chr1	7827963	.	T	TA,TAA	404.77	PASS	AC=1,0;AF=0.526,0.026;AN=2;DP=756;MQ=60;set=variant2-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant36-variant42	GT:DP:GQ:SB	0/1:49:99:17,5,17,10
chr1	7828173	.	TAAAAA	TAAA,TAAAA,T,TAA,TA	988.58	PASS	AC=0,1,1,0,0;AF=0.227,0.295,0.193,0.216,0.011;AN=2;DP=3661;set=Intersection	GT:DP:GQ:SB	3/2:100:99:4,6,38,52
chr1	7828278	.	CA	C	1013.14	PASS	AC=2;AF=0.849;AN=2;DP=2781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2002,216,0:0,0,40,32
chr1	7829226	.	A	G	3168.85	PASS	AC=2;AF=1;AN=2;DP=3208;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.544;ReadPosRankSum=0.396;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3091,252,0:0,0,35,49
chr1	7829286	.	A	G	1489.59	PASS	AC=1;AF=0.5;AN=2;DP=915;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant13-variant14-variant15-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,46:111:99:1077,0,1739:33,32,26,20
chr1	7833485	.	G	A	1188.45	PASS	AC=1;AF=0.587;AN=2;DP=2049;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,63:134:99:1511,0,1823:37,34,40,23
chr1	7840926	.	G	C	764.8	PASS	AC=1;AF=0.795;AN=2;DP=2170;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,40:69:99:1335,0,949:7,22,13,27
chr1	7841549	.	A	C	563.09	PASS	AC=2;AF=0.93;AN=2;DP=588;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:719,54,0:0,0,3,15
chr1	7844443	.	G	T	488.23	PASS	AC=1;AF=0.526;AN=2;DP=420;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant27-variant29-variant33-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:611,0,756:7,7,8,9
chr1	7844444	.	C	A	488.23	PASS	AC=1;AF=0.526;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant27-variant29-variant33-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:611,0,756:7,7,8,9
chr1	7844680	.	T	C	422.99	PASS	AC=1;AF=0.767;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:390,0,301:8,5,9,3
chr1	7845695	.	T	C	348.01	PASS	AC=1;AF=0.725;AN=2;DP=1214;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:780,0,721:5,18,10,19
chr1	7847000	.	A	G	422.67	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant15-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:451,0,415:5,11,5,12
chr1	7847362	.	C	CT	1013.52	PASS	AC=2;AF=0.989;AN=2;DP=1276;FS=0;MQ=60;MQRankSum=0.68;ReadPosRankSum=-0.211;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:839,81,0:0,0,21,6
chr1	7847529	.	A	G	882.98	PASS	AC=1;AF=0.524;AN=2;DP=2214;set=variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,60:140:99:1225,0,1978:36,44,29,31
chr1	7847614	.	G	A	442.55	PASS	AC=1;AF=0.569;AN=2;DP=1051;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:507,0,799:9,19,6,14
chr1	7861153	.	C	CT	839.38	PASS	AC=1;AF=0.658;AN=2;DP=2178;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,24:62:99:638,0,1117:19,19,12,12
chr1	7861304	.	T	C	558.95	PASS	AC=1;AF=0.597;AN=2;DP=955;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:709,0,448:7,13,11,16
chr1	7861345	.	G	A	242.82	PASS	AC=1;AF=0.662;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:212,0,358:3,8,1,6
chr1	7863051	.	A	T	602.76	PASS	AC=1;AF=0.5;AN=2;DP=693;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant13-variant14-variant15-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:930,0,1439:36,19,28,13
chr1	7863293	.	C	T	656.37	PASS	AC=1;AF=0.649;AN=2;DP=1298;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:856,0,461:4,13,8,22
chr1	7869915	.	G	C	2617.21	PASS	AC=2;AF=0.989;AN=2;DP=3567;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2526,237,0:0,0,49,30
chr1	7870048	.	T	C	4008.62	PASS	AC=2;AF=0.966;AN=2;DP=4639;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:3968,405,0:0,0,69,66
chr1	7870144	.	A	C	2322.83	PASS	AC=2;AF=0.989;AN=2;DP=3008;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2947,290,0:0,0,40,57
chr1	7880469	.	A	G	507.77	PASS	AC=1;AF=0.663;AN=2;DP=1574;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:638,0,689:15,6,13,10
chr1	7886424	.	G	A	124.7	PASS	AC=1;AF=0.526;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant27-variant28-variant29-variant32-variant33-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:292,0,264:7,0,8,1
chr1	7887248	.	G	A	792	PASS	AC=1;AF=0.583;AN=2;DP=3162;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,69:141:99:1756,0,1809:37,35,37,32
chr1	7887493	.	T	C	6582.06	PASS	AC=2;AF=0.989;AN=2;DP=12069;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,309:309:99:9523,926,0:0,0,183,126
chr1	7887926	.	A	G	775.34	PASS	AC=1;AF=0.5;AN=2;DP=1012;MQ=60;set=variant-variant5-variant7-variant9-variant13-variant14-variant15-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,49:117:99:1294,0,1889:25,43,19,30
chr1	7889804	.	C	G	1071.49	PASS	AC=1;AF=0.713;AN=2;DP=3123;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,61:108:99:1816,0,1186:32,15,46,15
chr1	7889941	.	C	T	1946.52	PASS	AC=1;AF=0.524;AN=2;DP=5168;set=variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:138,151:289:99:3835,0,3581:82,56,82,69
chr1	7890064	.	A	G	1593.74	PASS	AC=1;AF=0.56;AN=2;DP=6508;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,157:299:99:4299,0,1299:60,82,77,80
chr1	7890264	.	A	G	766.51	PASS	AC=1;AF=0.713;AN=2;DP=4483;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,58:123:99:1412,0,1782:20,45,20,38
chr1	7902571	.	T	A	45.94	PASS	AC=2;AF=0.75;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;ReadPosRankSum=0.103;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:74,9,0:0,0,1,2
chr1	7904247	.	C	T	11453.9	PASS	AC=2;AF=0.989;AN=2;DP=14073;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,358:358:99:11603,1075,0:0,0,199,159
chr1	7904475	.	G	A	20838	PASS	AC=2;AF=0.989;AN=2;DP=23485;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,663:663:99:20528,1992,0:0,0,317,346
chr1	7906476	.	G	T	4185.69	PASS	AC=2;AF=0.989;AN=2;DP=6794;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5347,552,0:0,0,99,86
chr1	7907007	.	G	A	479.05	PASS	AC=1;AF=0.569;AN=2;DP=1085;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:629,0,538:7,15,10,16
chr1	7907620	.	A	ATAAT	3076.95	PASS	AC=1;AF=0.667;AN=2;DP=5830;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,70:193:99:2733,0,6838:84,39,53,17
chr1	7907805	.	C	CT	5029.2	PASS	AC=1;AF=0.5;AN=2;DP=3238;MQ=60;set=variant-variant5-variant7-variant9-variant13-variant14-variant15-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:205,203:408:99:6289,0,6404:82,123,86,117
chr1	7907971	.	C	A	398.18	PASS	AC=1;AF=0.5;AN=2;DP=889;set=variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,30:64:99:903,0,947:10,24,9,21
chr1	7913184	.	CA	C,CAA	410.14	PASS	AC=1,0;AF=0.511,0.011;AN=2;DP=7987;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:165:99:27,40,40,58
chr1	7913430	.	G	A	1932.03	PASS	AC=1;AF=0.721;AN=2;DP=5519;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,112:209:99:2818,0,2520:59,38,68,44
chr1	7980364	.	CTT	CT,CTTT,C,CTTTT,CTTTTT	898.58	PASS	AC=1,0,0,0,0;AF=0.415,0.098,0.012,0.012,0.012;AN=2;DP=9879;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:226:99:58,85,36,47
chr1	7998963	.	T	G	2608.56	PASS	AC=2;AF=0.989;AN=2;DP=3898;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2988,273,0:0,0,33,58
chr1	8021778	.	T	C	2307.24	PASS	AC=1;AF=0.765;AN=2;DP=5785;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,93:200:99:2033,0,2640:54,53,43,50
chr1	8022171	.	C	T	451.53	PASS	AC=1;AF=0.672;AN=2;DP=1205;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:534,0,590:4,16,6,15
chr1	8022800	.	CT	C,CTT	153.38	PASS	AC=1,0;AF=0.472,0.028;AN=2;DP=1297;set=variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-filterInvariant17-filterInvariant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:33:99:9,7,13,4
chr1	8037496	.	G	A	1506.34	PASS	AC=1;AF=0.65;AN=2;DP=4016;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,83:169:99:1990,0,2087:40,46,36,47
chr1	8064578	.	A	G	1351.65	PASS	AC=1;AF=0.65;AN=2;DP=3474;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,48:109:99:1217,0,1565:34,27,27,21
chr1	8072466	.	C	T	1422.24	PASS	AC=1;AF=0.65;AN=2;DP=3777;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,76:153:99:2125,0,2311:21,56,25,51
chr1	8377828	.	G	A	314.62	PASS	AC=2;AF=0.671;AN=2;DP=1014;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:839,63,0:0,0,20,1
chr1	8384268	.	T	C	1485.9	PASS	AC=2;AF=0.989;AN=2;DP=2384;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1571,156,0:0,0,33,19
chr1	8384569	.	A	C	129.25	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2241;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:98,23:121:69:69,0,5330:23,75,23,0
chr1	8384575	.	G	C	97.27	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2676;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:86,39:125:99:468,0,1621:15,71,39,0
chr1	8390051	.	G	A	133.71	PASS	AC=1;AF=0.643;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:72:72,0,260:3,0,1,1
chr1	8390495	.	A	G	1028.25	PASS	AC=2;AF=0.85;AN=2;DP=3622;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,111:114:99:3288,248,0:2,1,56,55
chr1	8395441	.	T	C	7127.44	PASS	AC=2;AF=0.647;AN=2;DP=8006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,277:277:99:8421,828,0:0,0,171,106
chr1	8404093	.	C	T	477.99	PASS	AC=2;AF=0.625;AN=2;DP=1345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant13-variant15-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2305,220,0:0,0,31,43
chr1	8404169	.	T	A	962.34	PASS	AC=2;AF=1;AN=2;DP=2266;FS=0;MQ=60;MQRankSum=0.037;ReadPosRankSum=1.585;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1765,165,0:0,0,23,32
chr1	8412935	.	C	T	100.7	PASS	AC=1;AF=0.597;AN=2;DP=1018;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:453,0,598:12,8,11,11
chr1	8412989	.	A	G	103.58	PASS	AC=1;AF=0.798;AN=2;DP=1287;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:366,0,625:11,10,7,9
chr1	8415235	.	C	T	1124.84	PASS	AC=1;AF=0.5;AN=2;DP=1422;MQ=60;set=variant-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant24-variant25-variant27-variant29-variant31-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,55:97:99:1483,0,1084:15,27,22,33
chr1	8415290	.	C	A	440.69	PASS	AC=1;AF=0.5;AN=2;DP=787;MQ=60;set=variant-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant24-variant25-variant27-variant29-variant31-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:637,0,537:7,11,11,17
chr1	8418644	.	C	A	3061.64	PASS	AC=1;AF=0.756;AN=2;DP=6604;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,83:191:99:3162,0,5386:60,48,45,38
chr1	8418650	.	T	C	3286.56	PASS	AC=1;AF=0.756;AN=2;DP=6765;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,89:197:99:3269,0,5316:59,49,48,41
chr1	8421203	.	T	C	1300.81	PASS	AC=1;AF=0.732;AN=2;DP=5518;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,89:135:99:2260,0,1010:24,22,46,43
chr1	8422676	.	T	C	1765.52	PASS	AC=1;AF=0.732;AN=2;DP=6384;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,100:173:99:2436,0,1741:41,32,57,43
chr1	8424039	.	C	G	314.59	PASS	AC=1;AF=0.611;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:377,0,673:18,1,11,1
chr1	8425798	.	C	T	154.9	PASS	AC=1;AF=0.583;AN=2;DP=475;MQ=60;set=variant2-variant5-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:490,0,582:13,6,11,7
chr1	8425900	.	T	C	875.76	PASS	AC=1;AF=0.611;AN=2;DP=1286;MQ=60;set=variant2-variant5-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1036,0,1215:26,23,22,20
chr1	8526142	.	G	A	3024.9	PASS	AC=1;AF=0.689;AN=2;DP=4442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,49:127:99:1034,0,2012:37,41,24,25
chr1	8557320	.	C	G	509.76	PASS	AC=1;AF=0.686;AN=2;DP=452;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:142,0,267:7,0,3,2
chr1	8557691	.	A	C	1100.85	PASS	AC=1;AF=0.689;AN=2;DP=1200;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:444,0,393:3,13,4,11
chr1	8877520	.	AT	ATTT,ATT,A	833	PASS	AC=1,0,0;AF=0.291,0.395,0.023;AN=2;DP=3598;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:75:99:17,23,17,18
chr1	8926285	.	A	AG	908.96	PASS	AC=1;AF=0.683;AN=2;DP=1922;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,37:87:99:980,0,1460:37,13,27,10
chr1	8927066	.	G	T	701.43	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=2.055;FractionInformativeReads=1;MQ=60;MQRankSum=-0.338;QD=10.02;ReadPosRankSum=-1.749;SOR=0.957;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:43,27:70:99:730,0,1133:26,17,18,9
chr1	8930369	.	T	C	1482.85	PASS	AC=1;AF=0.854;AN=2;DP=2070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:813,0,886:21,11,22,7
chr1	8930385	.	G	A	1853.1	PASS	AC=1;AF=0.854;AN=2;DP=2569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:817,0,1055:26,16,22,11
chr1	8935149	.	A	G	582.26	PASS	AC=1;AF=0.857;AN=2;DP=745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:356,0,374:0,11,0,11
chr1	9006104	.	T	TC	382.38	PASS	AC=1;AF=0.63;AN=2;DP=487;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:162,0,156:1,4,0,5
chr1	9009214	.	C	T	613.36	PASS	AC=1;AF=0.63;AN=2;DP=615;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:332,0,423:11,2,8,4
chr1	9009406	.	C	T	2837.38	PASS	AC=1;AF=0.625;AN=2;DP=3656;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:94,73:167:99:1417,0,2304:43,51,37,36
chr1	9009444	.	A	C	2520.64	PASS	AC=1;AF=0.676;AN=2;DP=4318;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,70:149:99:1596,0,1983:35,44,31,39
chr1	9011537	.	G	A	1764.97	PASS	AC=1;AF=0.625;AN=2;DP=3962;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,74:156:99:1793,0,2120:38,44,29,45
chr1	9011586	.	T	G	1417.19	PASS	AC=2;AF=0.797;AN=2;DP=4896;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,134:136:99:4392,358,0:1,1,53,81
chr1	9011722	.	G	T	441.05	PASS	AC=2;AF=0.775;AN=2;DP=1559;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1706,155,0:0,0,15,37
chr1	9017204	.	A	G	678.39	PASS	AC=1;AF=0.525;AN=2;DP=1859;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant20-variant27-variant29-variant30-variant31-variant32-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,46:98:99:1090,0,1190:29,23,28,18
chr1	9030964	.	C	T	1383.29	PASS	AC=1;AF=0.529;AN=2;DP=2999;MQ=60;set=variant2-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant20-variant27-variant29-variant30-variant32-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:124,110:234:99:2749,0,3219:68,56,62,48
chr1	9064609	.	AG	A	134.82	PASS	AC=1;AF=0.529;AN=2;DP=401;MQ=60;set=variant3-variant4-variant5-variant8-variant15-variant17-variant18-variant22-variant25-variant28-variant29-variant30-variant31-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:304,0,394:14,0,9,2
chr1	9084924	.	T	C	552.78	PASS	AC=1;AF=0.841;AN=2;DP=3309;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,44:91:99:1177,0,1220:34,13,30,14
chr1	9095202	.	C	T	1848.88	PASS	AC=1;AF=0.805;AN=2;DP=4529;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,51:124:99:1164,0,1815:45,28,30,21
chr1	9095229	.	G	A	2072.77	PASS	AC=1;AF=0.571;AN=2;DP=3494;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:96,71:167:99:1601,0,2425:59,37,39,32
chr1	9095444	.	C	T	408.5	PASS	AC=1;AF=0.571;AN=2;DP=1882;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:888,0,961:13,17,14,19
chr1	9095494	.	G	A	862.44	PASS	AC=1;AF=0.571;AN=2;DP=2033;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:1026,0,1127:24,15,20,16
chr1	9095610	.	T	C	3076.79	PASS	AC=1;AF=0.571;AN=2;DP=6254;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:132,110:242:99:2873,0,3585:88,44,71,39
chr1	9095847	.	C	T	1427.54	PASS	AC=1;AF=0.571;AN=2;DP=2282;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1592,0,1512:9,39,6,41
chr1	9096050	.	C	A	202.22	PASS	AC=1;AF=0.571;AN=2;DP=563;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:418,0,370:10,7,11,3
chr1	9096695	.	T	C	130.63	PASS	AC=1;AF=0.574;AN=2;DP=447;FractionInformativeReads=1;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:169,0,556:1,14,3,5
chr1	9096929	.	C	CA	63.31	PASS	AC=1;AF=0.611;AN=2;DP=345;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-filterInvariant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:191,0,380:8,7,5,4
chr1	9097241	.	C	T	808.01	PASS	AC=1;AF=0.569;AN=2;DP=1615;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,41:87:99:1573,0,2638:28,18,22,19
chr1	9097251	.	A	G	792.44	PASS	AC=1;AF=0.569;AN=2;DP=1723;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1667,0,2639:30,19,24,21
chr1	9098272	.	C	T	118.44	PASS	AC=1;AF=0.575;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant25-variant26-variant30-variant31-variant34-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:273,0,183:4,4,7,4
chr1	9098742	.	G	A	420.55	PASS	AC=1;AF=0.523;AN=2;DP=1201;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant25-variant26-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,27:62:99:523,0,1021:18,17,13,14
chr1	9100479	.	G	A	1032.56	PASS	AC=1;AF=0.523;AN=2;DP=3078;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant25-variant26-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,74:123:99:1842,0,1400:24,25,38,36
chr1	9160870	.	T	TGAGCCCAGGAGTTC	600.24	PASS	AC=1;AF=0.686;AN=2;DP=1123;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:342,0,2783:7,12,3,7
chr1	9161550	.	G	A	1045.3	PASS	AC=1;AF=0.703;AN=2;DP=3461;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,45:121:99:1033,0,1854:33,43,20,25
chr1	9161619	.	C	T	956.91	PASS	AC=1;AF=0.727;AN=2;DP=1955;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,29:72:99:750,0,1280:11,32,14,15
chr1	9161668	.	T	C	703.7	PASS	AC=1;AF=0.703;AN=2;DP=1500;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:832,0,767:13,18,15,16
chr1	9162051	.	C	T	353.62	PASS	AC=1;AF=0.703;AN=2;DP=1193;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:677,0,651:10,14,8,16
chr1	9162185	.	T	G	162.18	PASS	AC=1;AF=0.717;AN=2;DP=380;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:129,0,316:4,7,1,4
chr1	9162470	.	A	AC	309.77	PASS	AC=1;AF=0.5;AN=2;DP=1629;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,14:47:99:198,0,1160:28,5,10,4
chr1	9162490	.	A	G,AAG,AG	4514.84	PASS	AC=1,0,0;AF=0.563,0.016,0.125;AN=2;DP=3664;set=variant7-variant11-variant12-variant13-variant3-variant14-variant15-variant5-variant16-variant6-variant17-variant18-variant19-variant21-variant2-variant22-variant23-variant24-variant25-variant26-variant10-variant27-variant28-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	0/1:121:99:35,16,47,23
chr1	9163424	.	T	C	84.76	PASS	AC=2;AF=0.87;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant32-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,2,1
chr1	9163839	.	A	G	678.32	PASS	AC=1;AF=0.703;AN=2;DP=1680;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,20:65:99:490,0,1302:26,19,12,8
chr1	9164133	.	G	A	791.07	PASS	AC=1;AF=0.703;AN=2;DP=2344;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,46:79:99:1339,0,977:21,12,21,25
chr1	9164200	.	G	A	1822.02	PASS	AC=1;AF=0.75;AN=2;DP=1373;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant2-variant17	GT:AD:DP:GQ:PL:SB	0/1:61,63:124:99:1635,0,1634:39,22,33,30
chr1	9165868	.	A	G	948.56	PASS	AC=2;AF=0.989;AN=2;DP=926;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1047,93,0:0,0,10,21
chr1	9294783	.	CCGCCCCCGCCGCGCG	C	52.73	PASS	AC=2;AF=0.923;AN=2;DP=39;FS=0;set=variant-variant4-variant6-variant8-variant9-variant11-variant15-variant19-variant21-variant30-variant31-variant32-variant35	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:80,6,0:0,0,2,0
chr1	9294903	.	C	G	2323.97	PASS	AC=1;AF=0.66;AN=2;DP=1723;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant15-variant19-variant21-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1026,0,1213:32,15,27,16
chr1	9299947	.	T	G	2056.5	PASS	AC=1;AF=0.559;AN=2;DP=1361;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant15-variant19-variant21-variant28-variant30-variant31-variant34-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,37:82:99:869,0,1132:27,18,23,14
chr1	9306849	.	T	C	687.76	PASS	AC=1;AF=0.667;AN=2;DP=942;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,33:44:99:1076,0,317:10,1,28,5
chr1	9307033	.	G	A	3595.69	PASS	AC=1;AF=0.563;AN=2;DP=3251;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant15-variant19-variant21-variant28-variant30-variant31-variant34-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:122,131:253:99:3117,0,3007:54,68,58,73
chr1	9307138	.	T	C	1593.49	PASS	AC=1;AF=0.556;AN=2;DP=1715;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant13-variant15-variant19-variant21-variant28-variant30-variant31-variant34-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1550,0,1836:22,45,19,39
chr1	9307230	.	T	A	362.97	PASS	AC=1;AF=0.556;AN=2;DP=462;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant13-variant15-variant19-variant21-variant28-variant30-variant31-variant34-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:326,0,620:4,15,1,10
chr1	9323910	.	G	A	2220.22	PASS	AC=1;AF=0.545;AN=2;DP=3814;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:103,120:223:99:3100,0,2745:45,58,60,60
chr1	9324571	.	T	C	3002.29	PASS	AC=1;AF=0.679;AN=2;DP=10149;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:220,202:422:99:4959,0,5655:99,121,91,111
chr1	9324670	.	A	G	2057.15	PASS	AC=1;AF=0.679;AN=2;DP=7099;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,133:312:99:3280,0,4205:88,91,59,74
chr1	9325676	.	C	T	307.78	PASS	AC=1;AF=0.6;AN=2;DP=704;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:559,0,522:6,13,5,14
chr1	9325703	.	C	CT	452.02	PASS	AC=2;AF=0.824;AN=2;DP=824;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:621,60,0:0,0,9,11
chr1	9326179	.	A	T	610.76	PASS	AC=1;AF=0.577;AN=2;DP=1052;MQ=60;set=variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant26-variant27-variant33-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1137,0,1099:21,23,25,24
chr1	9326887	.	CTT	C,CT	218.26	PASS	AC=2,0;AF=0.721,0.256;AN=2;DP=625;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:20:60:0,0,5,15
chr1	9327177	.	C	T	1237.15	PASS	AC=1;AF=0.577;AN=2;DP=994;FractionInformativeReads=1;set=variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant26-variant27-variant33-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:770,0,842:19,14,20,13
chr1	9327344	.	G	T	701.83	PASS	AC=1;AF=0.577;AN=2;DP=766;MQ=60;set=variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant26-variant27-variant33-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:1043,0,695:13,13,15,20
chr1	9327387	.	T	G	1580.96	PASS	AC=2;AF=0.816;AN=2;DP=1999;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1548,132,0:0,0,23,21
chr1	9327949	.	A	C	1975.96	PASS	AC=1;AF=0.661;AN=2;DP=4164;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,68:149:99:1514,0,1983:35,46,28,40
chr1	9328297	.	CAAAAA	CAAAA,C,CA,CAAA,CAAAAAA,CAA	142.58	PASS	AC=0,0,0,1,0,0;AF=0.119,0.238,0.095,0.143,0.024,0.024;AN=2;DP=161;set=variant2-variant4-variant5-variant6-variant9-variant15-variant16-variant19-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant42	GT:DP:GQ:SB	0/4:7:69:2,2,3,0
chr1	9329112	.	A	AG	258.8	PASS	AC=1;AF=0.605;AN=2;DP=692;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:505,0,738:12,11,11,4
chr1	9329289	.	C	T	3932.27	PASS	AC=1;AF=0.553;AN=2;DP=2289;MQ=60;set=variant2-variant3-variant5-variant8-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:62,76:138:99:1825,0,1479:32,30,41,35
chr1	9330479	.	C	T	618.6	PASS	AC=1;AF=0.5;AN=2;DP=709;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:990,0,885:17,19,16,21
chr1	9330740	.	G	C	586.33	PASS	AC=1;AF=0.605;AN=2;DP=1326;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:41,46:87:99:979,0,1056:18,23,22,24
chr1	9331244	.	T	C	556.2	PASS	AC=1;AF=0.679;AN=2;DP=1597;FractionInformativeReads=1;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:733,0,892:18,18,17,14
chr1	9331277	.	G	T	1234.46	PASS	AC=1;AF=0.556;AN=2;DP=1399;MQ=60;set=variant3-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant26-variant27-variant33-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,34:82:99:794,0,1144:23,25,17,17
chr1	9331331	.	A	T	1349.35	PASS	AC=1;AF=0.559;AN=2;DP=1182;MQ=60;set=variant3-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant26-variant27-variant33-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:784,0,1015:13,24,10,20
chr1	9352855	.	GGGGGC	G	163.65	PASS	AC=1;AF=0.6;AN=2;DP=326;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,14:17:99:553,0,104:1,2,7,7
chr1	9353015	.	CGCCGGG	C	1609.09	PASS	AC=2;AF=0.989;AN=2;DP=1614;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1535,105,0:0,0,16,19
chr1	9411469	.	G	C	416	PASS	AC=1;AF=0.643;AN=2;DP=744;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant34-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:409,0,341:8,6,10,6
chr1	9411667	.	A	G	599.75	PASS	AC=2;AF=0.869;AN=2;DP=831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:863,81,0:0,0,12,15
chr1	9416346	.	C	T	2592.38	PASS	AC=2;AF=0.604;AN=2;DP=4605;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant32-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:7557,682,0:0,0,120,108
chr1	9427869	.	G	A	2144.33	PASS	AC=2;AF=0.888;AN=2;DP=5770;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,140:141:99:4283,409,0:0,1,59,81
chr1	9428520	.	G	A	1918.95	PASS	AC=2;AF=0.556;AN=2;DP=1264;MQ=60;set=variant3-variant15-variant16-variant21-variant23-variant24-variant25-variant35-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:3950,404,0:0,0,68,67
chr1	9428685	.	T	G	1392.61	PASS	AC=2;AF=0.881;AN=2;DP=2029;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1652,140,0:0,0,19,28
chr1	9428769	.	G	A	732.91	PASS	AC=2;AF=1;AN=2;DP=1458;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1059,103,0:0,0,23,12
chr1	9658465	.	T	G	497.31	PASS	AC=2;AF=0.849;AN=2;DP=3709;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3339,297,0:0,0,68,31
chr1	9658707	.	G	A	839.09	PASS	AC=2;AF=0.837;AN=2;DP=2728;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2701,240,0:0,0,23,57
chr1	9661061	.	A	G	882.05	PASS	AC=2;AF=0.849;AN=2;DP=2096;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2033,171,0:0,0,45,12
chr1	9668027	.	G	A	238.16	PASS	AC=1;AF=0.5;AN=2;DP=249;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant14-variant15-variant16-variant17-variant21-variant22-variant26-variant30-variant31-variant32-variant35-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:209,0,268:0,7,1,5
chr1	9670483	.	T	A	950.65	PASS	AC=2;AF=0.872;AN=2;DP=4712;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3673,363,0:0,0,71,51
chr1	9670834	.	C	T	695.36	PASS	AC=2;AF=0.837;AN=2;DP=3046;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2610,258,0:0,0,32,54
chr1	9671257	.	CTT	CT,C	149.22	PASS	AC=2,0;AF=0.841,0.024;AN=2;DP=1347;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:28:82:0,0,8,20
chr1	9673779	.	C	A	766.57	PASS	AC=2;AF=0.86;AN=2;DP=4643;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:7,131:138:99:3883,338,0:7,0,56,75
chr1	9781412	.	C	G	1013.07	PASS	AC=1;AF=0.671;AN=2;DP=3222;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,66:117:99:2047,0,1547:18,33,26,40
chr1	9782556	.	C	T	977.85	PASS	AC=1;AF=0.657;AN=2;DP=3085;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,46:112:99:984,0,1804:37,29,26,20
chr1	9787508	.	T	C	2807.99	PASS	AC=1;AF=0.943;AN=2;DP=5790;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,76:144:99:1712,0,1589:29,39,37,39
chr1	9787840	.	G	T	119.97	PASS	AC=1;AF=0.756;AN=2;DP=943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,8:30:99:186,0,572:9,13,2,6
chr1	9792105	.	G	GA	162.61	PASS	AC=2;AF=0.989;AN=2;DP=870;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:571,60,0:0,0,2,18
chr1	9816620	.	T	C	3377.27	PASS	AC=1;AF=0.955;AN=2;DP=4415;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,75:146:99:1734,0,1679:44,27,45,30
chr1	9883878	.	T	C	548.53	PASS	AC=2;AF=1;AN=2;DP=1034;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:729,69,0:0,0,12,11
chr1	9908515	.	A	G	1748.93	PASS	AC=2;AF=1;AN=2;DP=2493;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1909,165,0:0,0,22,33
chr1	9910469	.	AT	A	577.84	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=0.96;MQ=60;MQRankSum=-2.382;QD=11.56;ReadPosRankSum=0.959;SOR=0.859;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:615,0,596:12,12,11,13
chr1	9910659	.	G	A	322.07	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant15-variant26-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:350,0,572:12,4,7,4
chr1	9989150	.	C	T	1794.28	PASS	AC=1;AF=0.5;AN=2;DP=929;MQ=60;set=variant-variant5-variant6-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,81:169:99:2569,0,2683:70,18,65,16
chr1	9996744	.	T	G	870.02	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=1.267;FractionInformativeReads=1;MQ=60;MQRankSum=-1.322;QD=15;ReadPosRankSum=2.333;SOR=1.132;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:898,0,866:7,22,5,24
chr1	10001235	.	TTTCG	T	3170.84	PASS	AC=2;AF=0.857;AN=2;DP=3331;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:3553,250,0:0,0,23,60
chr1	10003320	.	G	A	1446.75	PASS	AC=2;AF=0.884;AN=2;DP=2154;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1935,181,0:0,0,37,24
chr1	10027540	.	G	A	611.73	PASS	AC=2;AF=0.884;AN=2;DP=803;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:922,66,0:0,0,3,19
chr1	10057240	.	T	C	299.96	PASS	AC=1;AF=0.5;AN=2;DP=1305;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant15-variant19-variant21-variant26-variant28-variant30-filterInvariant31-variant32-variant35-variant38-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,9:56:99:172,0,2632:24,23,9,0
chr1	10057246	.	G	C	263.83	PASS	AC=1;AF=0.5;AN=2;DP=1177;set=variant-filterInvariant4-variant8-filterInvariant10-filterInvariant12-filterInvariant15-variant17-variant19-filterInvariant21-filterInvariant29-filterInvariant32-variant34-variant35-filterInvariant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,7:77:72:72,0,3169:40,30,7,0
chr1	10068111	.	CA	C	30.6	PASS	AC=1;AF=0.5;AN=2;DP=163;MQ=60;set=filterInvariant2-filterInvariant3-variant6-variant15-variant18-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:107,0,211:8,2,4,2
chr1	10190884	.	A	T	1242.48	PASS	AC=1;AF=0.586;AN=2;DP=3021;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,59:133:99:1327,0,1767:32,42,24,35
chr1	10241135	.	TAA	TA,T	2290.82	PASS	AC=1,0;AF=0.535,0.012;AN=2;DP=10375;MQ=60;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:245:99:52,56,59,78
chr1	10318652	.	C	G	1032.86	PASS	AC=1;AF=0.6;AN=2;DP=1722;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1166,0,1150:29,25,28,23
chr1	10322054	.	G	A	1910.53	PASS	AC=1;AF=0.583;AN=2;DP=3164;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,82:152:99:2112,0,1808:37,33,37,45
chr1	10322153	.	A	G	1885.82	PASS	AC=1;AF=0.6;AN=2;DP=2040;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,53:105:99:1375,0,1263:20,32,21,32
chr1	10327407	.	A	T	313.96	PASS	AC=1;AF=0.583;AN=2;DP=1088;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:505,0,570:15,5,15,8
chr1	10327867	.	A	G	203.21	PASS	AC=1;AF=0.675;AN=2;DP=128;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:93:93,0,373:1,8,0,4
chr1	10328338	.	C	T	857.14	PASS	AC=1;AF=0.6;AN=2;DP=1463;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,36:91:99:852,0,1349:22,33,15,21
chr1	10334924	.	C	T	466.53	PASS	AC=1;AF=0.661;AN=2;DP=1152;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,20:56:99:504,0,881:20,16,15,5
chr1	10335315	.	G	A	1209.71	PASS	AC=2;AF=0.977;AN=2;DP=1349;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1644,149,0:0,0,33,17
chr1	10339209	.	CAT	C	4310.21	PASS	AC=1;AF=0.6;AN=2;DP=3850;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,98:211:99:3723,0,4403:43,70,42,56
chr1	10342352	.	C	T	418.69	PASS	AC=1;AF=0.661;AN=2;DP=1325;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:545,0,467:13,4,12,11
chr1	10342629	.	G	A	156.13	PASS	AC=1;AF=0.681;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:309,0,730:9,17,7,10
chr1	10355834	.	C	T	920.86	PASS	AC=1;AF=0.6;AN=2;DP=1292;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,37:86:99:893,0,1431:16,33,15,22
chr1	10356028	.	T	TG	450.76	PASS	AC=1;AF=0.583;AN=2;DP=710;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:736,0,410:6,7,8,13
chr1	10356562	.	C	A	161.37	PASS	AC=1;AF=0.611;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:266,0,395:10,2,8,3
chr1	10357206	.	AT	A,ATTT,ATT	245.14	PASS	AC=1,0,0;AF=0.452,0.024,0.024;AN=2;DP=2586;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:70:99:18,25,11,16
chr1	10357406	.	A	G	125.48	PASS	AC=1;AF=0.618;AN=2;DP=90;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant11-variant13-variant15-variant19-variant20-variant26-variant28-variant29-variant31-variant32-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:166,0,28:0,1,1,4
chr1	10366487	.	T	G	1380.37	PASS	AC=1;AF=0.583;AN=2;DP=1918;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,59:110:99:1722,0,1514:12,39,13,46
chr1	10366692	.	C	G	230.46	PASS	AC=1;AF=0.583;AN=2;DP=736;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:378,0,422:6,11,6,10
chr1	10367424	.	G	A	1763.43	PASS	AC=1;AF=0.6;AN=2;DP=1884;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,55:116:99:1737,0,1898:14,47,12,43
chr1	10367591	.	T	C	343.05	PASS	AC=1;AF=0.583;AN=2;DP=608;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:675,0,317:8,1,14,4
chr1	10384176	.	C	CTTGAAA	1470.14	PASS	AC=1;AF=0.6;AN=2;DP=1508;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,41:92:99:1568,0,2891:23,28,17,24
chr1	10394536	.	C	G	1713.89	PASS	AC=1;AF=0.587;AN=2;DP=2987;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,74:151:99:1978,0,2030:47,30,42,32
chr1	10402009	.	CAAA	CAA,CA,CAAAA,C	39.16	PASS	AC=1,0,0,0;AF=0.518,0.054,0.018,0.018;AN=2;DP=303;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant37-variant38-variant42	GT:DP:GQ:SB	0/1:16:99:8,0,8,0
chr1	10403482	.	G	A	94.62	PASS	AC=1;AF=0.583;AN=2;DP=566;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:451,0,549:6,12,1,12
chr1	10420918	.	G	A	2043.7	PASS	AC=1;AF=0.6;AN=2;DP=3332;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:104,105:209:99:2574,0,2410:56,48,61,44
chr1	10420937	.	C	T	2370.42	PASS	AC=1;AF=0.587;AN=2;DP=4287;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:123,117:240:99:2837,0,2967:66,57,66,51
chr1	10425117	.	AT	A	257.33	PASS	AC=1;AF=0.661;AN=2;DP=1045;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:402,0,553:15,7,12,5
chr1	10428452	.	G	A	454.73	PASS	AC=1;AF=0.587;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:616,0,967:25,12,17,6
chr1	10431158	.	T	C	1176.52	PASS	AC=1;AF=0.6;AN=2;DP=1463;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1103,0,1104:28,14,26,18
chr1	10435170	.	T	C	566.2	PASS	AC=1;AF=0.583;AN=2;DP=795;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:724,0,741:3,18,6,15
chr1	10435324	.	C	A	611.56	PASS	AC=1;AF=0.6;AN=2;DP=1959;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,50:113:99:1202,0,1522:33,30,29,21
chr1	10436892	.	AACACAC	AACAC,A,AACACACAC	213.73	PASS	AC=0,0,1;AF=0.536,0.036,0.071;AN=2;DP=560;MQ=60;set=variant-variant2-variant6-variant9-variant10-variant11-variant15-variant16-variant17-variant25-variant28-variant33-variant34-variant40	GT:DP:GQ:SB	0/3:27:99:2,11,7,7
chr1	10438006	.	A	T	42.21	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,217:5,2,3,1
chr1	10438687	.	C	T	1173.42	PASS	AC=1;AF=0.661;AN=2;DP=2715;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:956,0,1239:24,24,16,19
chr1	10438892	.	G	A	2316.13	PASS	AC=1;AF=0.587;AN=2;DP=3698;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:96,92:188:99:2359,0,2489:52,44,52,40
chr1	10440556	.	A	G	73.69	PASS	AC=1;AF=0.556;AN=2;DP=158;FractionInformativeReads=1;set=variant-variant3-variant4-variant8-variant11-variant15-variant20-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:201,0,103:0,3,2,5
chr1	10441664	.	T	C	480.42	PASS	AC=1;AF=0.661;AN=2;DP=1241;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:878,0,667:5,18,5,23
chr1	10459779	.	G	A	1024.02	PASS	AC=1;AF=0.587;AN=2;DP=1759;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,55:89:99:1357,0,789:13,21,22,33
chr1	10460485	.	T	C	77.28	PASS	AC=1;AF=0.605;AN=2;DP=485;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:413,0,385:11,3,11,4
chr1	10460499	.	A	G	433.09	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.018;QD=12.74;ReadPosRankSum=-0.638;SOR=0.622;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:461,0,443:11,5,12,6
chr1	10460716	.	A	AT	305.62	PASS	AC=1;AF=0.673;AN=2;DP=513;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant28-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:101,0,134:0,6,1,4
chr1	10468005	.	CA	C,CAA	167.45	PASS	AC=1,0;AF=0.414,0.086;AN=2;DP=2864;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant6-variant8-filterInvariant9-filterInvariant10-variant11-variant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-variant19-filterInvariant20-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant32-variant33-filterInvariant34-filterInvariant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:114:99:62,33,13,6
chr1	10471789	.	A	T	108.03	PASS	AC=1;AF=0.587;AN=2;DP=488;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:360,0,620:5,14,1,10
chr1	10473196	.	C	T	743.01	PASS	AC=1;AF=0.587;AN=2;DP=2044;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,34:93:99:820,0,1734:38,21,18,16
chr1	10478830	.	CA	C,CAA	82.92	PASS	AC=0,1;AF=0.3,0.2;AN=2;DP=1035;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/2:25:99:12,4,9,0
chr1	10479635	.	C	G	837.78	PASS	AC=1;AF=0.667;AN=2;DP=6694;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:128,121:249:99:3151,0,3263:62,66,64,57
chr1	10479678	.	G	A	793.34	PASS	AC=1;AF=0.6;AN=2;DP=4526;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:127,133:260:99:3076,0,3207:57,70,70,63
chr1	10490111	.	T	C	1490.52	PASS	AC=1;AF=0.682;AN=2;DP=1581;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:874,0,1037:21,15,22,7
chr1	10490285	.	T	C	2921.31	PASS	AC=1;AF=0.682;AN=2;DP=4228;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,92:170:99:2189,0,1851:38,40,46,46
chr1	10502307	.	AT	A	308.59	PASS	AC=2;AF=0.966;AN=2;DP=1116;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:950,99,0:0,0,23,10
chr1	10502710	.	A	G	5629.8	PASS	AC=2;AF=0.966;AN=2;DP=6909;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:5777,599,0:0,0,96,104
chr1	10509703	.	C	T	1876.54	PASS	AC=2;AF=0.966;AN=2;DP=1331;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1353,102,0:0,0,30,4
chr1	10511330	.	AT	A,ATT	388.17	PASS	AC=1,0;AF=0.672,0.017;AN=2;DP=467;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:12:99:6,0,5,1
chr1	10511360	.	A	G	469.02	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:357,0,307:8,3,9,1
chr1	10511544	.	C	T	3636.33	PASS	AC=1;AF=0.643;AN=2;DP=3262;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,66:126:99:1524,0,1550:32,28,34,32
chr1	10511589	.	T	C	3717.06	PASS	AC=2;AF=0.966;AN=2;DP=4733;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,116:117:99:3806,340,0:0,1,61,55
chr1	10512056	.	T	C	7758.98	PASS	AC=2;AF=0.966;AN=2;DP=8821;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:7103,677,0:0,0,139,87
chr1	10512270	.	A	AT	1626.75	PASS	AC=1;AF=0.6;AN=2;DP=3520;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant40-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:55,51:106:99:894,0,1082:12,43,12,39
chr1	10517273	.	T	C	190.31	PASS	AC=1;AF=0.68;AN=2;DP=209;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,242:1,6,1,4
chr1	10517944	.	CTG	C	799.39	PASS	AC=2;AF=0.966;AN=2;DP=1599;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2036,148,0:0,0,21,28
chr1	10519090	.	C	T	518.05	PASS	AC=2;AF=0.965;AN=2;DP=373;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:486,36,0:0,0,10,2
chr1	10519787	.	A	T	1123.87	PASS	AC=1;AF=0.5;AN=2;DP=3320;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-filterInvariant12-variant13-variant14-variant15-variant16-variant19-filterInvariant21-variant23-variant24-variant25-variant26-variant27-variant29-filterInvariant30-variant31-variant32-variant34-variant35-variant37-variant39-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,44:109:99:634,0,1941:15,50,8,36
chr1	10529194	.	T	C	2681.74	PASS	AC=1;AF=0.677;AN=2;DP=2592;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,50:102:99:1300,0,1488:36,16,35,15
chr1	10555257	.	C	T	1584.21	PASS	AC=1;AF=0.744;AN=2;DP=2343;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,37:85:99:933,0,1352:30,18,25,12
chr1	10596341	.	C	T	1324.94	PASS	AC=1;AF=0.56;AN=2;DP=3114;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant35-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:85,68:153:99:1745,0,2251:39,46,29,39
chr1	10596388	.	A	G	1671.53	PASS	AC=2;AF=0.989;AN=2;DP=3179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,89:90:99:2886,265,0:1,0,32,57
chr1	10690948	.	C	G,T	87.2	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=41;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant13-variant15-variant30	GT:DP:GQ:SB	0/1:11:99:0,4,2,5
chr1	10696712	.	CAA	C,CA	140.66	PASS	AC=0,1;AF=0.533,0.133;AN=2;DP=116;MQ=60;set=variant-variant3-variant8-variant9-variant15-variant16-variant19-variant21-variant27-variant28-variant31-variant32-variant35-variant37-variant42	GT:DP:GQ:SB	0/2:6:6:1,0,5,0
chr1	10706482	.	A	G	324.94	PASS	AC=1;AF=0.5;AN=2;DP=189;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:40,24:64:99:711,0,1152:11,29,3,21
chr1	10713765	.	T	C	4128.14	PASS	AC=1;AF=0.643;AN=2;DP=10450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:165,168:333:99:4259,0,4096:84,81,81,87
chr1	10714436	.	C	T	422.24	PASS	AC=1;AF=0.595;AN=2;DP=1147;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant16-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,41:66:99:1159,0,728:16,9,25,16
chr1	10719645	.	A	G	585.92	PASS	AC=1;AF=0.647;AN=2;DP=1670;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:842,0,730:19,4,22,6
chr1	10856513	.	TG	T	545.81	PASS	AC=2;AF=0.845;AN=2;DP=2583;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,78:82:99:2110,197,0:4,0,40,38
chr1	10856517	.	G	A	619.42	PASS	AC=2;AF=0.845;AN=2;DP=2578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3691,260,0:0,0,47,38
chr1	10856692	.	C	T	1337.6	PASS	AC=2;AF=0.7;AN=2;DP=3931;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4309,429,0:0,0,57,87
chr1	11072579	.	T	C	917.48	PASS	AC=2;AF=0.942;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:496,45,0:0,0,10,5
chr1	11072885	.	C	T	381.29	PASS	AC=2;AF=0.826;AN=2;DP=888;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:761,72,0:0,0,10,14
chr1	11079077	.	A	G	267.07	PASS	AC=2;AF=0.826;AN=2;DP=808;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:755,57,0:0,0,2,17
chr1	11080723	.	T	TG	98.75	PASS	AC=2;AF=0.872;AN=2;DP=801;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:816,69,0:0,0,6,17
chr1	11082054	.	AG	A	103.61	PASS	AC=2;AF=0.872;AN=2;DP=346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:154,12,0:0,0,4,0
chr1	11086097	.	A	AT	1336.83	PASS	AC=2;AF=0.826;AN=2;DP=2861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2915,235,0:0,0,38,40
chr1	11086717	.	A	G	221.67	PASS	AC=2;AF=0.86;AN=2;DP=1546;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1772,171,0:0,0,31,26
chr1	11087524	.	G	A	2327.96	PASS	AC=2;AF=0.86;AN=2;DP=5991;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5856,582,0:0,0,94,101
chr1	11087835	.	T	C	276.2	PASS	AC=2;AF=0.872;AN=2;DP=556;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:361,27,0:0,0,1,8
chr1	11090916	.	C	A	846.21	PASS	AC=2;AF=0.826;AN=2;DP=3007;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2636,251,0:0,0,34,50
chr1	11094665	.	G	A	231.25	PASS	AC=2;AF=0.907;AN=2;DP=140;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	11094757	.	G	GA,GAA	377.46	PASS	AC=1,0;AF=0.737,0.013;AN=2;DP=721;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:21:35:2,2,15,2
chr1	11095039	.	C	T	80.93	PASS	AC=2;AF=0.872;AN=2;DP=943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:908,89,0:0,0,14,16
chr1	11104676	.	G	A	331.62	PASS	AC=2;AF=0.802;AN=2;DP=639;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:378,33,0:0,0,9,2
chr1	11104712	.	G	A	576.02	PASS	AC=2;AF=0.802;AN=2;DP=1027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:902,77,0:0,0,21,5
chr1	11104845	.	T	C	1450.09	PASS	AC=2;AF=0.86;AN=2;DP=4900;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3713,355,0:1,0,69,52
chr1	11105106	.	C	T	597.83	PASS	AC=2;AF=0.802;AN=2;DP=2689;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3725,267,0:0,0,38,48
chr1	11105122	.	C	T	504.5	PASS	AC=2;AF=0.86;AN=2;DP=2563;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3696,267,0:0,0,36,52
chr1	11107439	.	G	T	72.1	PASS	AC=2;AF=0.81;AN=2;DP=740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:640,54,0:0,0,6,12
chr1	11119899	.	T	C	4997.74	PASS	AC=2;AF=1;AN=2;DP=7102;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=0.928;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:5876,594,0:0,0,83,115
chr1	11126517	.	C	T	104.96	PASS	AC=2;AF=0.803;AN=2;DP=378;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:514,48,0:0,0,11,5
chr1	11126569	.	C	A	215.23	PASS	AC=2;AF=0.774;AN=2;DP=845;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:991,90,0:0,0,21,9
chr1	11126941	.	C	T	323.54	PASS	AC=2;AF=0.774;AN=2;DP=1294;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1061,96,0:0,0,9,23
chr1	11128001	.	A	G	412.34	PASS	AC=2;AF=0.774;AN=2;DP=911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:709,63,0:0,0,15,6
chr1	11128329	.	A	G	43.72	PASS	AC=2;AF=0.813;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:269,27,0:0,0,3,6
chr1	11128654	.	G	A	1127.29	PASS	AC=2;AF=0.762;AN=2;DP=2227;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2094,189,0:0,0,44,19
chr1	11129848	.	A	G	562.31	PASS	AC=2;AF=0.791;AN=2;DP=1662;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1576,131,0:0,0,12,32
chr1	11132217	.	G	A	629.98	PASS	AC=2;AF=0.774;AN=2;DP=2364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2479,237,0:0,0,34,45
chr1	11133956	.	A	AAAG,AAG,AG,AAAAG,AAAAAG	822.77	PASS	AC=2,0,0,0,0;AF=0.448,0.207,0.034,0.052,0.069;AN=2;DP=1046;set=variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	1/1:36:99:0,0,24,12
chr1	11134157	.	T	G	866.41	PASS	AC=2;AF=0.802;AN=2;DP=2169;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2908,234,0:0,0,47,31
chr1	11137778	.	C	T	493.49	PASS	AC=2;AF=0.774;AN=2;DP=1450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1134,107,0:0,0,11,25
chr1	11140621	.	ACACAC	AACAC,A	80.72	PASS	AC=2,0;AF=0.758,0.032;AN=2;DP=370;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	1/1:4:12:0,0,0,4
chr1	11140623	.	ACACAC	AAC,A,AACAC	80.72	PASS	AC=2,0,0;AF=0.534,0.069,0.086;AN=2;DP=345;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant27-variant28-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	1/1:4:12:0,0,0,4
chr1	11141187	.	C	G	913.85	PASS	AC=2;AF=0.802;AN=2;DP=5023;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4859,473,0:0,0,80,78
chr1	11151779	.	A	G	158.43	PASS	AC=2;AF=0.829;AN=2;DP=494;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:794,69,0:0,0,5,18
chr1	11187893	.	T	C	1609.98	PASS	AC=2;AF=0.989;AN=2;DP=1868;MQ=60;MQRankSum=0.892;ReadPosRankSum=0.499;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1684,153,0:0,0,17,34
chr1	11205058	.	C	T	1414.83	PASS	AC=2;AF=0.762;AN=2;DP=5052;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,158:160:99:4657,428,0:1,1,81,77
chr1	11288618	.	G	A	352.53	PASS	AC=2;AF=0.779;AN=2;DP=1653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1233,114,0:0,0,21,17
chr1	11288633	.	G	C	463.19	PASS	AC=2;AF=0.779;AN=2;DP=1856;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1477,135,0:0,0,26,19
chr1	11288758	.	G	A	875.54	PASS	AC=2;AF=0.779;AN=2;DP=4391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3960,360,0:0,0,76,44
chr1	11292666	.	T	A	152.9	PASS	AC=2;AF=0.776;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:616,45,0:0,0,1,14
chr1	11294474	.	T	A	252.98	PASS	AC=2;AF=0.779;AN=2;DP=865;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:878,66,0:0,0,1,21
chr1	11297762	.	T	C	445.51	PASS	AC=2;AF=0.779;AN=2;DP=2425;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1842,162,0:0,0,37,17
chr1	11298790	.	T	C	114.2	PASS	AC=2;AF=0.786;AN=2;DP=625;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:578,42,0:0,0,4,10
chr1	11301714	.	A	G	881.01	PASS	AC=2;AF=0.779;AN=2;DP=5802;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,164:165:99:4947,484,0:1,0,89,75
chr1	11317320	.	C	T	278.98	PASS	AC=2;AF=0.762;AN=2;DP=1358;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1624,150,0:0,0,15,35
chr1	11318236	.	C	T	36.49	PASS	AC=2;AF=0.88;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:119,9,0:0,0,3,0
chr1	11318763	.	C	G	201.16	PASS	AC=2;AF=0.775;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:616,45,0:0,0,1,14
chr1	11319587	.	A	G	416.97	PASS	AC=2;AF=0.762;AN=2;DP=2096;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,65:66:99:1972,167,0:1,0,26,39
chr1	11322565	.	C	G	740.98	PASS	AC=2;AF=0.774;AN=2;DP=2155;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1439,152,0:0,0,23,28
chr1	11322628	.	G	T	562.23	PASS	AC=2;AF=0.774;AN=2;DP=2173;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1399,157,0:0,0,23,30
chr1	11574366	.	C	G	1738.8	PASS	AC=1;AF=0.536;AN=2;DP=1899;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant12-variant15-variant16-variant17-variant22-variant26-variant30-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,79:139:99:1944,0,1444:39,21,47,32
chr1	11575260	.	G	T	334.89	PASS	AC=1;AF=0.536;AN=2;DP=181;MQ=60;set=variant2-variant10-variant12-variant15-variant16-variant17-variant22-variant26-variant30-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:251,0,309:7,3,7,3
chr1	11575331	.	A	G	417.26	PASS	AC=1;AF=0.536;AN=2;DP=468;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant12-variant15-variant16-variant17-variant22-variant26-variant30-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:553,0,527:16,6,15,7
chr1	11579344	.	G	A	468.76	PASS	AC=1;AF=0.5;AN=2;DP=406;MQ=60;set=variant10-variant12-variant15-variant16-variant17-variant22-variant26-variant30-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,6:34:99:108,0,719:18,10,5,1
chr1	11579504	.	G	C	1593.97	PASS	AC=1;AF=0.5;AN=2;DP=2437;MQ=60;set=variant10-variant12-variant15-variant16-variant17-variant22-variant26-variant30-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:123,78:201:99:1669,0,3041:66,57,44,34
chr1	11584164	.	A	G	1443.2	PASS	AC=1;AF=0.522;AN=2;DP=1874;MQ=60;set=variant3-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,52:94:99:1354,0,1091:17,25,22,30
chr1	11586585	.	C	G	552.7	PASS	AC=1;AF=0.5;AN=2;DP=467;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant15-variant16-variant17-variant22-variant26-variant30-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:384,0,735:19,3,10,4
chr1	11586677	.	T	C	1369.62	PASS	AC=1;AF=0.5;AN=2;DP=1841;MQ=60;set=variant10-variant12-variant15-variant16-variant17-variant22-variant26-variant30-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,59:160:99:1362,0,2434:57,44,32,27
chr1	11593640	.	A	G	887.34	PASS	AC=2;AF=0.942;AN=2;DP=1984;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1758,171,0:0,0,33,24
chr1	11593676	.	C	T	832.25	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=3.425;FractionInformativeReads=1;MQ=60;MQRankSum=0.495;QD=12.42;ReadPosRankSum=1.724;SOR=1.209;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:860,0,957:19,15,22,11
chr1	11593793	.	T	TGCACACACGCAC	2861.02	PASS	AC=2;AF=1;AN=2;DP=3932;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:4120,298,0:0,0,40,37
chr1	11594400	.	T	C	738.37	PASS	AC=2;AF=0.632;AN=2;DP=2259;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1996,198,0:0,0,38,28
chr1	11595038	.	A	G	1329.85	PASS	AC=1;AF=0.525;AN=2;DP=2379;MQ=60;set=variant5-variant6-variant7-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant29-variant30-variant33-variant35-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,50:122:99:1174,0,1781:37,35,24,26
chr1	11595203	.	A	G	804.04	PASS	AC=1;AF=0.529;AN=2;DP=889;MQ=60;set=variant5-variant6-variant7-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant29-variant30-variant33-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:842,0,665:8,16,14,21
chr1	11597444	.	T	TG	739.75	PASS	AC=1;AF=0.529;AN=2;DP=1268;set=variant5-variant6-variant7-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant29-variant30-variant33-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:959,0,1126:22,21,18,20
chr1	11708736	.	T	C	5505.73	PASS	AC=2;AF=0.833;AN=2;DP=7281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6523,631,0:0,0,112,99
chr1	11709051	.	A	AG	651.78	PASS	AC=1;AF=0.778;AN=2;DP=1011;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:838,0,591:9,5,13,8
chr1	11709052	.	C	G,CCCAG,CCCAGCCCAGCCCAG	862.77	PASS	AC=0,1,0;AF=0.273,0.625,0.023;AN=2;DP=1260;set=Intersection	GT:DP:GQ:SB	0/2:36:99:10,5,13,8
chr1	11710561	.	T	G	2920.3	PASS	AC=1;AF=0.55;AN=2;DP=2399;MQ=60;set=variant9-variant10-variant11-variant12-variant15-variant16-variant24-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:149,132:281:99:3191,0,3870:81,68,69,63
chr1	11710991	.	G	A	61.77	PASS	AC=1;AF=0.583;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant15-variant26-variant28-variant31	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:223,0,274:2,7,3,6
chr1	11714368	.	T	G	1148.72	PASS	AC=2;AF=0.805;AN=2;DP=1743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1634,165,0:0,0,21,34
chr1	11714793	.	A	G	422.99	PASS	AC=2;AF=0.817;AN=2;DP=1067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1138,90,0:0,0,7,23
chr1	11714883	.	G	GGCGGGGC	107.74	PASS	AC=1;AF=0.882;AN=2;DP=116;FS=0;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:132,0,163:2,3,2,2
chr1	11714938	.	T	C	111.22	PASS	AC=2;AF=1;AN=2;DP=280;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:259,24,0:0,0,4,4
chr1	11714981	.	A	G	66.22	PASS	AC=2;AF=1;AN=2;DP=298;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:301,24,0:0,0,4,4
chr1	11715017	.	G	A	37.7	PASS	AC=1;AF=0.615;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant12-variant15-variant19-variant21-variant30-variant31-variant32-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:134,0,115:2,2,4,0
chr1	11718195	.	A	G	382.09	PASS	AC=1;AF=0.579;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant11-variant12-variant15-variant19-variant21-variant25-variant26-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:636,0,486:12,4,17,2
chr1	11721833	.	CCT	C	3207.52	PASS	AC=1;AF=0.575;AN=2;DP=2827;MQ=60;set=variant3-variant5-variant11-variant12-variant15-variant19-variant21-variant25-variant26-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,86:163:99:3427,0,5382:36,41,43,43
chr1	11721854	.	C	T	1591.04	PASS	AC=1;AF=0.714;AN=2;DP=4638;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,85:163:99:3300,0,5388:33,45,43,42
chr1	11722688	.	G	A	788.9	PASS	AC=1;AF=0.575;AN=2;DP=1084;MQ=60;set=variant3-variant5-variant11-variant12-variant15-variant19-variant21-variant25-variant26-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:947,0,794:14,17,15,22
chr1	11724092	.	G	C	386.78	PASS	AC=1;AF=0.736;AN=2;DP=1938;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:808,0,1069:26,22,21,14
chr1	11728894	.	G	A	1414.67	PASS	AC=1;AF=0.556;AN=2;DP=976;set=variant5-variant11-variant15-variant26-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,54:119:99:1376,0,1606:28,37,24,30
chr1	11731177	.	G	C	206.71	PASS	AC=1;AF=0.639;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant11-variant13-variant15-variant18-variant19-variant21-variant22-variant26-variant31-variant32-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,199:5,0,5,0
chr1	11731927	.	AG	A	212.44	PASS	AC=1;AF=0.587;AN=2;DP=639;MQ=60;set=variant3-variant5-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:351,0,414:13,5,14,1
chr1	11734049	.	C	G	1475.4	PASS	AC=1;AF=0.538;AN=2;DP=1245;MQ=60;set=variant3-variant5-variant11-variant15-variant22-variant26-variant32-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,55:125:99:1311,0,1907:25,45,21,34
chr1	11734472	.	C	T	438.8	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.585;FractionInformativeReads=1;MQ=60;MQRankSum=0.686;QD=15.13;ReadPosRankSum=-2.148;SOR=1.292;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:467,0,248:7,5,12,5
chr1	11735262	.	C	T	933.82	PASS	AC=1;AF=0.526;AN=2;DP=1363;MQ=60;set=variant3-variant5-variant8-variant11-variant15-variant22-variant23-variant26-variant28-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1157,0,1240:13,31,14,31
chr1	11735610	.	A	T	2046.02	PASS	AC=1;AF=0.5;AN=2;DP=176;FS=2.765;FractionInformativeReads=1;MQ=60;MQRankSum=0.829;QD=11.63;ReadPosRankSum=-1.062;SOR=0.505;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:87,89:176:99:2074,0,2162:59,28,56,33
chr1	11735652	.	G	A	2491.08	PASS	AC=1;AF=0.528;AN=2;DP=4328;MQ=60;set=variant2-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant25-variant28-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,136:280:99:3040,0,3495:88,56,76,60
chr1	11735841	.	C	A	2751.05	PASS	AC=1;AF=0.526;AN=2;DP=3458;MQ=60;set=variant3-variant5-variant8-variant11-variant15-variant22-variant23-variant26-variant28-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,118:228:99:3379,0,2874:49,61,42,76
chr1	11735877	.	A	G	1891.09	PASS	AC=1;AF=0.528;AN=2;DP=2817;MQ=60;set=variant2-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant25-variant28-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,95:198:99:2449,0,2946:42,61,40,55
chr1	11736959	.	C	A	2579.32	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.402;QD=14.17;ReadPosRankSum=0.178;SOR=0.679;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:76,106:182:99:2608,0,1669:39,37,54,52
chr1	11737051	.	G	C	1069.23	PASS	AC=2;AF=0.722;AN=2;DP=3683;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3694,345,0:0,0,45,70
chr1	11740358	.	A	G	1506.26	PASS	AC=2;AF=0.688;AN=2;DP=2911;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3431,342,0:0,0,71,43
chr1	11740812	.	A	C	764.93	PASS	AC=1;AF=0.526;AN=2;DP=814;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant11-variant15-variant18-variant22-variant23-variant26-variant28-variant31-variant32-variant33-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:731,0,529:9,11,14,12
chr1	11741304	.	A	C	727.8	PASS	AC=1;AF=0.526;AN=2;DP=1018;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant11-variant15-variant18-variant22-variant23-variant26-variant28-variant31-variant32-variant33-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,55:83:99:1586,0,653:17,11,37,18
chr1	11741506	.	A	C	1259.52	PASS	AC=1;AF=0.526;AN=2;DP=1655;MQ=60;set=variant3-variant5-variant8-variant11-variant15-variant18-variant22-variant23-variant26-variant28-variant31-variant32-variant33-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:1383,0,1084:22,32,21,37
chr1	11742074	.	C	T	43.71	PASS	AC=2;AF=0.865;AN=2;DP=326;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:285,27,0:0,0,2,7
chr1	11766424	.	C	T	915.46	PASS	AC=1;AF=0.611;AN=2;DP=759;MQ=60;set=variant-variant10-variant13-variant15-variant16-variant22-variant31-variant34-variant39	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:1118,0,1457:21,27,15,27
chr1	11766889	.	A	G	172.72	PASS	AC=1;AF=0.676;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:192,0,168:3,3,4,3
chr1	11772229	.	A	G	1014.29	PASS	AC=1;AF=0.6;AN=2;DP=683;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant13-variant15-variant16-variant22-variant34-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,41:87:99:1365,0,1224:29,17,26,15
chr1	11772303	.	A	G	1411.14	PASS	AC=1;AF=0.825;AN=2;DP=4872;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,68:143:99:1579,0,2036:48,27,39,29
chr1	11779499	.	T	C	663.31	PASS	AC=2;AF=0.77;AN=2;DP=1036;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1020,90,0:0,0,19,11
chr1	11780670	.	A	AAAG,AAG,AAAAG	87.7	PASS	AC=2,0,0;AF=0.321,0.286,0.071;AN=2;DP=248;set=variant-variant8-variant14-variant15-variant16-variant17-variant21-variant25-variant27-variant30-variant31-variant37-variant42-variant44	GT:DP:GQ:SB	1/1:10:39:0,0,8,2
chr1	11781768	.	A	G	649.97	PASS	AC=2;AF=1;AN=2;DP=1012;FS=0;MQ=60;MQRankSum=0.714;ReadPosRankSum=1.531;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:894,93,0:0,0,12,19
chr1	11782781	.	G	C	789.05	PASS	AC=2;AF=0.643;AN=2;DP=1977;MQ=60;set=variant-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3120,320,0:0,0,47,60
chr1	11782886	.	C	T	282.21	PASS	AC=1;AF=0.726;AN=2;DP=1013;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,20:25:36:395,0,36:2,3,6,14
chr1	11783451	.	T	A	368.83	PASS	AC=2;AF=0.645;AN=2;DP=1405;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1188,108,0:0,0,13,23
chr1	11783484	.	T	G	438.56	PASS	AC=2;AF=0.645;AN=2;DP=1255;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1039,99,0:0,0,15,18
chr1	11784118	.	A	G	349.26	PASS	AC=2;AF=0.63;AN=2;DP=1147;MQ=60;set=variant-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1668,162,0:0,0,30,24
chr1	11784986	.	A	G	1862.2	PASS	AC=2;AF=0.989;AN=2;DP=3001;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2099,198,0:0,0,27,39
chr1	11785403	.	T	C	300.1	PASS	AC=2;AF=0.655;AN=2;DP=432;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:619,51,0:0,0,15,2
chr1	11796168	.	CGGGCG	C	8016.84	PASS	AC=2;AF=1;AN=2;DP=7069;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:7438,512,0:0,0,107,63
chr1	11796240	.	C	T	2721.8	PASS	AC=1;AF=0.5;AN=2;DP=808;MQ=60;set=variant6-variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:153,159:312:99:3531,0,3715:87,66,83,76
chr1	11807426	.	C	T	2030.6	PASS	AC=2;AF=0.671;AN=2;DP=6175;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,209:209:99:6256,625,0:0,0,117,92
chr1	11808706	.	T	G	1539.81	PASS	AC=1;AF=0.577;AN=2;DP=2532;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,55:113:99:1618,0,1688:14,44,14,41
chr1	11810674	.	G	A	210.78	PASS	AC=1;AF=0.6;AN=2;DP=914;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:883,0,853:21,18,14,21
chr1	11810691	.	C	T	146.82	PASS	AC=1;AF=0.6;AN=2;DP=923;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1044,0,877:19,19,16,24
chr1	11810765	.	T	A	824.99	PASS	AC=2;AF=1;AN=2;DP=1953;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=0.577;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1947,180,0:0,0,23,37
chr1	11810844	.	A	G	698.58	PASS	AC=1;AF=0.625;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-filterInvariant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:391,0,583:9,15,7,11
chr1	11824242	.	A	C	411.86	PASS	AC=2;AF=0.795;AN=2;DP=884;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:804,81,0:0,0,18,9
chr1	11824303	.	T	C	993.62	PASS	AC=1;AF=0.756;AN=2;DP=1608;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,30:44:99:776,0,313:10,4,18,12
chr1	11824346	.	G	A	1231.62	PASS	AC=1;AF=0.75;AN=2;DP=2087;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,34:51:99:933,0,389:10,7,20,14
chr1	11824556	.	A	G	1282.88	PASS	AC=1;AF=0.744;AN=2;DP=1620;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,42:61:99:1199,0,449:8,11,14,28
chr1	11824575	.	T	C	1536.01	PASS	AC=2;AF=0.795;AN=2;DP=1269;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2038,156,0:0,0,15,37
chr1	11824578	.	C	T	1536.01	PASS	AC=1;AF=0.744;AN=2;DP=1225;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:885,0,428:5,12,8,22
chr1	11826085	.	G	A	2543.95	PASS	AC=1;AF=0.5;AN=2;DP=202;FS=8.031;FractionInformativeReads=0.995;MQ=60;MQRankSum=-0.812;QD=12.59;ReadPosRankSum=1.702;SOR=0.508;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:97,104:201:99:2572,0,2636:57,40,50,54
chr1	11827180	.	A	G	2514.27	PASS	AC=2;AF=1;AN=2;DP=3712;FS=0;MQRankSum=0.197;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2712,261,0:0,0,57,30
chr1	11827304	.	A	G	2165.64	PASS	AC=2;AF=1;AN=2;DP=3456;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,100:101:99:2780,258,0:1,0,46,54
chr1	11828364	.	G	A	1410.26	PASS	AC=2;AF=0.625;AN=2;DP=571;MQ=60;set=variant12-variant15-variant31-variant37	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:5006,473,0:0,0,61,97
chr1	11831543	.	C	T	1032.31	PASS	AC=1;AF=0.5;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:962,0,1346:30,20,28,14
chr1	11831595	.	G	A	901.53	PASS	AC=1;AF=0.5;AN=2;DP=819;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant17-variant22-variant31-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:73,59:132:99:1646,0,1873:41,32,34,25
chr1	11831615	.	C	T	5209.33	PASS	AC=1;AF=0.795;AN=2;DP=4509;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,79:140:99:2065,0,1643:33,28,40,39
chr1	11831756	.	A	G	1206.15	PASS	AC=1;AF=0.788;AN=2;DP=1583;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:760,0,920:7,22,5,19
chr1	11835455	.	T	G	782.17	PASS	AC=1;AF=0.5;AN=2;DP=707;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:822,0,876:21,18,20,16
chr1	11835556	.	C	T	1434.19	PASS	AC=1;AF=0.5;AN=2;DP=942;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:35,51:86:99:1284,0,793:19,16,22,29
chr1	11836441	.	T	C	7923.65	PASS	AC=2;AF=0.989;AN=2;DP=7958;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:5873,591,0:0,0,120,78
chr1	11836628	.	T	C	5274.21	PASS	AC=1;AF=0.775;AN=2;DP=6865;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,84:164:99:2245,0,2141:32,48,34,50
chr1	11836670	.	C	A	1244.84	PASS	AC=1;AF=0.5;AN=2;DP=936;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:64,52:116:99:1419,0,1832:25,39,15,37
chr1	11836868	.	A	G	370.91	PASS	AC=1;AF=0.782;AN=2;DP=705;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:86:86,0,235:5,4,0,3
chr1	11838696	.	A	G	2011.15	PASS	AC=1;AF=0.5;AN=2;DP=1453;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:92,90:182:99:2264,0,2173:52,40,56,34
chr1	11838841	.	A	G	2299.18	PASS	AC=1;AF=0.5;AN=2;DP=1456;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:93,106:199:99:3004,0,2509:58,35,55,51
chr1	11839009	.	C	T	2150.1	PASS	AC=1;AF=0.5;AN=2;DP=1000;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:71,48:119:99:1637,0,3073:41,30,20,28
chr1	11839034	.	G	A	2534.72	PASS	AC=1;AF=0.5;AN=2;DP=975;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:71,40:111:99:1358,0,3126:44,27,21,19
chr1	11839201	.	T	A	1191.14	PASS	AC=1;AF=0.5;AN=2;DP=554;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:809,0,1637:18,25,14,22
chr1	11839208	.	C	T	571.76	PASS	AC=1;AF=0.5;AN=2;DP=529;MQ=60;set=variant12-variant15-variant17-variant21-variant22-variant23-variant31-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:39,42:81:99:1081,0,1434:15,24,17,25
chr1	11839792	.	T	C	864.49	PASS	AC=1;AF=0.5;AN=2;DP=379;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:754,0,550:17,7,18,10
chr1	11839923	.	C	T	1162.09	PASS	AC=1;AF=0.5;AN=2;DP=1173;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant30-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:41,59:100:99:1460,0,1064:19,22,27,32
chr1	11839971	.	C	T	858.84	PASS	AC=1;AF=0.5;AN=2;DP=751;MQ=60;set=variant12-variant15-variant17-variant21-variant22-variant23-variant31-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:49,59:108:99:1403,0,1112:23,26,28,31
chr1	11839998	.	T	C	1831.83	PASS	AC=2;AF=0.943;AN=2;DP=3041;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2852,289,0:0,0,41,56
chr1	11844454	.	A	C	1460.86	PASS	AC=1;AF=0.5;AN=2;DP=1190;MQ=60;set=variant12-variant15-variant17-variant21-variant22-variant23-variant31-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:83,65:148:99:1638,0,2160:41,42,29,36
chr1	11844737	.	A	G	435.77	PASS	AC=1;AF=0.5;AN=2;DP=186;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:6,23:29:99:595,0,123:3,3,11,12
chr1	11844827	.	A	G	102.92	PASS	AC=2;AF=0.988;AN=2;DP=288;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;ReadPosRankSum=0.742;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:345,30,0:0,0,2,8
chr1	11845113	.	G	A	938.93	PASS	AC=2;AF=0.989;AN=2;DP=1430;MQ=60;MQRankSum=1.526;ReadPosRankSum=1.443;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1635,150,0:0,0,35,15
chr1	11845167	.	TTTA	T	1183.44	PASS	AC=1;AF=0.5;AN=2;DP=621;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1766,0,1560:27,14,25,20
chr1	11845222	.	T	C	1493.64	PASS	AC=1;AF=0.5;AN=2;DP=958;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1406,0,1537:39,28,31,27
chr1	11846092	.	G	GT	700.62	PASS	AC=2;AF=0.977;AN=2;DP=1286;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,32:34:46:783,46,0:2,0,24,8
chr1	11846252	.	G	A	2679.15	PASS	AC=1;AF=0.782;AN=2;DP=4482;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,82:138:99:1922,0,1416:33,23,40,42
chr1	11846447	.	G	A	626.48	PASS	AC=2;AF=0.989;AN=2;DP=1061;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1063,93,0:0,0,8,23
chr1	11846659	.	ATTTTTTTT	ATTTT,A,ATTTTTTTTT,ATTT	363.12	PASS	AC=0,1,0,0;AF=0.607,0.143,0.036,0.054;AN=2;DP=182;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant37-variant39-variant42-variant44	GT:DP:GQ:SB	0/2:8:99:2,1,5,0
chr1	11846742	.	C	T	496.36	PASS	AC=1;AF=0.5;AN=2;DP=204;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:438,0,427:10,4,12,1
chr1	11847436	.	T	C	1380.16	PASS	AC=1;AF=0.5;AN=2;DP=1276;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant17-variant21-variant22-variant23-variant31-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:85,74:159:99:1822,0,2123:45,40,36,38
chr1	11847449	.	G	A	2245.72	PASS	AC=1;AF=0.5;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:82,94:176:99:2274,0,1979:42,40,51,43
chr1	11847772	.	G	T	2350.36	PASS	AC=1;AF=0.5;AN=2;DP=1170;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:93,71:164:99:1774,0,2560:50,43,36,35
chr1	11847861	.	G	A	2482.39	PASS	AC=1;AF=0.5;AN=2;DP=1593;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:101,87:188:99:1932,0,2464:48,53,39,48
chr1	11847902	.	C	A	1956.72	PASS	AC=1;AF=0.5;AN=2;DP=1462;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:87,81:168:99:1793,0,2375:44,43,36,45
chr1	11848068	.	G	C	1872.31	PASS	AC=1;AF=0.5;AN=2;DP=1565;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:96,112:208:99:2621,0,2626:56,40,57,55
chr1	11848879	.	A	G	1796.01	PASS	AC=2;AF=0.977;AN=2;DP=3740;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2913,267,0:0,0,32,57
chr1	11848972	.	G	A	1266.29	PASS	AC=1;AF=0.5;AN=2;DP=594;FractionInformativeReads=1;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:1050,0,966:16,19,21,19
chr1	11849447	.	A	G	2731.45	PASS	AC=2;AF=0.989;AN=2;DP=4053;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3155,294,0:0,0,50,48
chr1	11850365	.	T	G	3064.38	PASS	AC=1;AF=0.769;AN=2;DP=4434;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,70:164:99:1698,0,2414:43,51,34,36
chr1	11850927	.	C	T	2100.75	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:71,83:154:99:2129,0,1754:28,43,28,55
chr1	11851003	.	G	C	780.31	PASS	AC=1;AF=0.583;AN=2;DP=550;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant34-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:515,0,699:1,18,2,15
chr1	11851185	.	C	T	135.91	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant17-variant23-variant31	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:396,0,461:12,5,11,2
chr1	11852300	.	C	T	1893.76	PASS	AC=1;AF=0.583;AN=2;DP=2113;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant34-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:79,56:135:99:1396,0,1976:42,37,29,27
chr1	11854457	.	G	A	9712.27	PASS	AC=2;AF=0.977;AN=2;DP=9482;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,253:253:99:9269,762,0:0,0,141,112
chr1	11854476	.	T	G	10101.3	PASS	AC=1;AF=0.625;AN=2;DP=4689;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:155,116:271:99:2776,0,3893:90,65,60,56
chr1	11854671	.	C	A	2216.98	PASS	AC=1;AF=0.588;AN=2;DP=1328;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant34-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1150,0,1716:27,30,22,23
chr1	11854896	.	G	A	644.37	PASS	AC=1;AF=0.5;AN=2;DP=456;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant18-variant19-variant22-variant24-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:32,14:46:99:292,0,959:13,19,5,9
chr1	11860683	.	T	C	136.72	PASS	AC=1;AF=0.786;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:302,0,251:2,5,2,8
chr1	11863057	.	G	A	3231.06	PASS	AC=1;AF=0.5;AN=2;DP=1767;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:96,116:212:99:2875,0,2169:43,53,48,68
chr1	11863904	.	C	T	823.93	PASS	AC=1;AF=0.5;AN=2;DP=498;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:42,19:61:99:469,0,1062:21,21,9,10
chr1	11864149	.	G	A	202.66	PASS	AC=1;AF=0.571;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant38	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:102,0,202:4,5,2,3
chr1	11864586	.	T	C	35.18	PASS	AC=1;AF=0.542;AN=2;DP=158;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant30-variant31-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:98:223,0,98:3,3,6,5
chr1	11865236	.	C	T	378.1	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:218,0,233:5,2,5,2
chr1	11865284	.	A	AC	887.28	PASS	AC=1;AF=0.5;AN=2;DP=293;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:264,0,482:11,4,8,1
chr1	11865542	.	A	C	589.92	PASS	AC=1;AF=0.5;AN=2;DP=271;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:447,0,230:4,6,4,11
chr1	11866451	.	G	A	381.94	PASS	AC=1;AF=0.5;AN=2;DP=164;MQ=60;set=variant4-variant15-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:615,0,713:6,16,7,16
chr1	11867044	.	T	C	237.06	PASS	AC=1;AF=0.805;AN=2;DP=1197;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:440,0,176:5,5,10,6
chr1	11876902	.	CTT	C	56.02	PASS	AC=1;AF=0.5;AN=2;DP=148;MQ=60;set=variant3-variant4-variant9-variant15-variant16-variant19-variant24-variant25-variant31-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:152,0,255:2,6,2,3
chr1	11879685	.	C	T	1324.55	PASS	AC=2;AF=0.6;AN=2;DP=1723;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2942,258,0:0,0,22,64
chr1	11879699	.	A	G	1054.85	PASS	AC=1;AF=0.5;AN=2;DP=707;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,26:69:99:729,0,1304:10,33,6,20
chr1	11883731	.	C	T	919.14	PASS	AC=1;AF=0.5;AN=2;DP=549;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:518,0,493:13,7,9,8
chr1	11884555	.	A	G	3169.67	PASS	AC=2;AF=1;AN=2;DP=4917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4372,413,0:0,0,71,67
chr1	11886383	.	C	CTG	1104.99	PASS	AC=1;AF=0.5;AN=2;DP=749;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:873,0,1036:13,15,6,17
chr1	11887303	.	A	G	757.33	PASS	AC=1;AF=0.5;AN=2;DP=693;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,12:39:99:418,0,1120:12,15,6,6
chr1	11887316	.	C	A	718.33	PASS	AC=1;AF=0.5;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:415,0,1133:13,15,6,6
chr1	11887373	.	T	TG	391.39	PASS	AC=1;AF=0.756;AN=2;DP=1579;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:712,0,486:8,6,14,13
chr1	11887374	.	G	GA	955.88	PASS	AC=1;AF=0.5;AN=2;DP=161;MQ=60;set=variant4-variant15-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:27,14:41:99:486,0,1081:14,13,8,6
chr1	11887382	.	A	G	497.66	PASS	AC=1;AF=0.5;AN=2;DP=588;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,13:40:99:465,0,1084:14,13,7,6
chr1	11888061	.	C	T	1474.46	PASS	AC=1;AF=0.5;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:46,56:102:99:1496,0,1346:36,10,39,17
chr1	11888384	.	A	G	1001.56	PASS	AC=2;AF=0.613;AN=2;DP=1673;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2018,165,0:0,0,25,30
chr1	11889225	.	G	A	1303.58	PASS	AC=1;AF=0.5;AN=2;DP=408;MQ=60;set=variant4-variant15-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:51,53:104:99:1278,0,1300:30,21,35,18
chr1	11889468	.	A	G	1530.75	PASS	AC=2;AF=0.617;AN=2;DP=3526;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4762,440,0:0,0,57,90
chr1	11896345	.	T	C	467.96	PASS	AC=1;AF=0.536;AN=2;DP=293;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:482,0,595:2,16,1,13
chr1	11897082	.	C	T	840.93	PASS	AC=1;AF=0.5;AN=2;DP=326;MQ=60;set=variant4-variant15-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:41,31:72:99:680,0,1089:21,20,17,14
chr1	11897271	.	T	C	707.28	PASS	AC=1;AF=0.536;AN=2;DP=786;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:43,30:73:99:997,0,1156:26,17,19,11
chr1	11897286	.	G	T	1402.11	PASS	AC=1;AF=0.5;AN=2;DP=705;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1218,0,1321:28,15,28,21
chr1	11897592	.	A	G	174.97	PASS	AC=2;AF=0.6;AN=2;DP=2322;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2483,236,0:0,0,28,51
chr1	11898789	.	G	T	3529.64	PASS	AC=1;AF=0.5;AN=2;DP=1016;MQ=60;set=variant4-variant15-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:139,128:267:99:3131,0,3614:56,83,57,71
chr1	11898849	.	T	G	1971.51	PASS	AC=1;AF=0.536;AN=2;DP=2570;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:92,123:215:99:3131,0,2449:44,48,54,69
chr1	11899033	.	G	T	758.3	PASS	AC=1;AF=0.556;AN=2;DP=2121;MQ=60;set=variant-variant3-variant4-variant9-variant14-variant15-variant19-variant24-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,70:150:99:1862,0,2048:33,47,25,45
chr1	11900035	.	G	A	246.22	PASS	AC=2;AF=1;AN=2;DP=1346;FS=0;MQ=60;MQRankSum=0.037;ReadPosRankSum=-1.216;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1095,99,0:0,0,25,8
chr1	11900385	.	C	T	1503.31	PASS	AC=1;AF=0.536;AN=2;DP=1631;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:77,65:142:99:1550,0,1806:40,37,36,29
chr1	11900437	.	T	C	1322	PASS	AC=1;AF=0.556;AN=2;DP=954;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant15-variant17-variant21-variant22-variant23-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:69,67:136:99:1777,0,1818:35,34,37,30
chr1	11900802	.	T	C	444	PASS	AC=1;AF=0.536;AN=2;DP=728;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:855,0,834:13,22,17,16
chr1	11900825	.	G	T	517.63	PASS	AC=1;AF=0.536;AN=2;DP=736;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:762,0,804:15,16,15,15
chr1	11901592	.	T	C	2302.18	PASS	AC=1;AF=0.536;AN=2;DP=2353;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:115,113:228:99:2850,0,2811:51,64,48,65
chr1	11903010	.	G	A	3661.75	PASS	AC=1;AF=0.536;AN=2;DP=2021;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:108,91:199:99:2277,0,2950:58,50,51,40
chr1	11905981	.	A	G	979.49	PASS	AC=1;AF=0.533;AN=2;DP=1007;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:44,56:100:99:1587,0,1026:25,19,34,22
chr1	11906068	.	A	G	1343.5	PASS	AC=1;AF=0.533;AN=2;DP=1643;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant33-variant34-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:71,89:160:99:2279,0,1694:36,35,45,44
chr1	11907603	.	G	A	1392.78	PASS	AC=1;AF=0.556;AN=2;DP=1363;FractionInformativeReads=1;set=variant12-variant13-variant15-variant17-variant21-variant22-variant23-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:97,93:190:99:2320,0,2229:50,47,49,44
chr1	11907648	.	C	T	2288.35	PASS	AC=1;AF=0.5;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant15-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,98:219:99:2317,0,2907:62,59,49,49
chr1	11917618	.	A	AT	1787.11	PASS	AC=1;AF=0.5;AN=2;DP=313;MQ=60;set=variant15-variant31	GT:AD:DP:GQ:PL:SB	0/1:81,83:164:99:1824,0,2139:42,39,38,45
chr1	11917620	.	T	TA	1389.35	PASS	AC=1;AF=0.58;AN=2;DP=3092;MQ=60;set=variant-variant3-variant9-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:88,77:165:99:1569,0,2021:41,47,40,37
chr1	11971345	.	T	C	137.97	PASS	AC=2;AF=0.706;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:207,21,0:0,0,2,5
chr1	11979869	.	C	T	2004.39	PASS	AC=1;AF=0.5;AN=2;DP=1612;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant18-variant20-variant26-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,79:158:99:2105,0,1954:35,44,36,43
chr1	11979909	.	T	C	5013.17	PASS	AC=2;AF=0.691;AN=2;DP=4736;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5247,459,0:0,0,82,71
chr1	11980449	.	T	C	1052.35	PASS	AC=1;AF=0.5;AN=2;DP=1564;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant26-variant29-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,48:119:99:1036,0,2005:33,38,20,28
chr1	11982373	.	A	G	582.56	PASS	AC=1;AF=0.591;AN=2;DP=427;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant18-variant21-variant22-variant24-variant25-variant28-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:345,0,302:8,4,9,4
chr1	11982544	.	T	C	3550.75	PASS	AC=2;AF=0.767;AN=2;DP=5045;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3885,375,0:0,0,69,56
chr1	11983206	.	A	G	5793.97	PASS	AC=2;AF=0.691;AN=2;DP=10495;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,370:370:99:11417,1108,0:0,0,173,197
chr1	11986535	.	G	A	647.49	PASS	AC=2;AF=0.679;AN=2;DP=992;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:981,108,0:0,0,18,19
chr1	11986553	.	A	AG	635.67	PASS	AC=2;AF=1;AN=2;DP=1448;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1159,93,0:0,0,14,17
chr1	11986621	.	T	C	100.47	PASS	AC=2;AF=0.688;AN=2;DP=498;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:493,45,0:0,0,9,6
chr1	11995176	.	A	G	698.29	PASS	AC=1;AF=0.56;AN=2;DP=949;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,13:43:99:276,0,769:12,18,4,9
chr1	12004479	.	TACACAC	TACACACACACACACAC,TACACACACACACAC,TACAC,TACACACACACACACACAC,T,TACACACACACACACACACACAC,TAC	367.23	PASS	AC=0,0,0,0,0,2,0;AF=0.177,0.113,0.145,0.081,0.065,0.032,0.065;AN=2;DP=624;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-filterInvariant39-variant40-variant43-variant44	GT:DP:GQ:SB	6/6:7:20:0,0,6,1
chr1	12009955	.	C	T	2530.79	PASS	AC=1;AF=0.619;AN=2;DP=2092;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,47:99:99:1151,0,2025:28,24,26,21
chr1	12009956	.	G	A	931.08	PASS	AC=1;AF=0.615;AN=2;DP=1203;MQ=60;set=variant2-variant12-variant14-variant15-variant17-variant26-variant29-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1239,0,1795:26,21,27,24
chr1	12010046	.	G	A	1795.53	PASS	AC=1;AF=0.571;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant26-variant29-variant38	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:720,0,754:13,14,10,17
chr1	12010469	.	G	T	3667.27	PASS	AC=1;AF=0.571;AN=2;DP=1009;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant26-variant29-variant38	GT:AD:DP:GQ:PL:SB	0/1:108,76:184:99:1578,0,2670:52,56,36,40
chr1	12012328	.	G	A	160.68	PASS	AC=1;AF=0.625;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:110,0,108:2,1,3,1
chr1	12017479	.	C	T	653.25	PASS	AC=1;AF=0.571;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant26-variant29-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:348,0,552:7,13,5,9
chr1	12018290	.	T	C	295.62	PASS	AC=1;AF=0.625;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant18-variant26-variant29-variant31-variant32-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:286,0,216:1,7,3,7
chr1	12024235	.	C	T	4227.95	PASS	AC=1;AF=0.658;AN=2;DP=4882;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:150,187:337:99:4127,0,3618:65,85,87,100
chr1	12024607	.	T	A	204.14	PASS	AC=1;AF=0.571;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant14-variant15-variant26-variant29-variant38	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:303,0,162:4,4,8,1
chr1	12026355	.	A	C	1499.69	PASS	AC=1;AF=0.571;AN=2;DP=725;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant14-variant15-variant17-variant26-variant29	GT:AD:DP:GQ:PL:SB	0/1:73,58:131:99:1210,0,1536:35,38,24,34
chr1	12027204	.	C	T	594.62	PASS	AC=2;AF=0.712;AN=2;DP=974;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1694,138,0:0,0,11,35
chr1	12033113	.	A	G	609.05	PASS	AC=2;AF=0.683;AN=2;DP=1003;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2297,159,0:0,0,17,36
chr1	12033120	.	G	C	511.77	PASS	AC=2;AF=0.683;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2140,144,0:0,0,14,33
chr1	12040324	.	A	G	2193.25	PASS	AC=2;AF=0.692;AN=2;DP=1956;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3269,320,0:0,0,65,42
chr1	12040479	.	T	C	3469.9	PASS	AC=2;AF=0.679;AN=2;DP=3093;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4132,410,0:0,0,60,77
chr1	12041977	.	G	GTTTTTTTT,GT,GTTTTT,GTTTTTTTTT,GTTTTTT,GTTTTTTT	606.33	PASS	AC=2,0,0,0,0,0;AF=0.308,0.077,0.154,0.038,0.038,0.115;AN=2;DP=140;MQ=60;set=variant7-variant10-variant12-variant14-variant15-variant17-variant24-variant25-variant31-variant32-variant33-variant37-variant38	GT:DP:GQ:SB	1/1:10:29:0,0,7,3
chr1	12042261	.	A	G	188.54	PASS	AC=2;AF=0.717;AN=2;DP=346;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:348,27,0:0,0,3,6
chr1	12056440	.	C	T	232.73	PASS	AC=2;AF=0.688;AN=2;DP=755;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:999,81,0:0,0,4,23
chr1	12058606	.	AAAAAC	A	1326.88	PASS	AC=2;AF=0.732;AN=2;DP=1288;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1729,121,0:0,0,29,11
chr1	12062205	.	A	G	984	PASS	AC=2;AF=0.732;AN=2;DP=2202;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,51:52:99:1738,118,0:1,0,14,37
chr1	12071680	.	A	G	3761.37	PASS	AC=2;AF=0.732;AN=2;DP=4146;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3750,354,0:0,0,59,59
chr1	12072518	.	G	C	2616.67	PASS	AC=2;AF=0.73;AN=2;DP=3787;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3611,339,0:0,0,52,61
chr1	12082926	.	A	G	902.26	PASS	AC=2;AF=0.726;AN=2;DP=2821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2273,218,0:0,0,26,47
chr1	12091210	.	T	C	532.5	PASS	AC=2;AF=0.714;AN=2;DP=886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:556,42,0:0,0,11,3
chr1	12144219	.	A	G	109.69	PASS	AC=2;AF=0.706;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:766,66,0:0,0,14,8
chr1	12144662	.	T	A	800.81	PASS	AC=2;AF=0.607;AN=2;DP=1580;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2188,150,0:0,0,22,26
chr1	12144667	.	C	T	764.28	PASS	AC=2;AF=0.607;AN=2;DP=1550;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2219,153,0:0,0,21,29
chr1	12144801	.	CTG	C	359.89	PASS	AC=2;AF=0.62;AN=2;DP=450;MQ=60;set=variant2-variant5-variant7-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:743,51,0:0,0,3,14
chr1	12175729	.	C	T	2188.64	PASS	AC=2;AF=1;AN=2;DP=5523;FS=0;MQ=60;MQRankSum=0.408;ReadPosRankSum=0.324;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4055,413,0:0,0,72,66
chr1	12183174	.	A	C	357.78	PASS	AC=1;AF=0.721;AN=2;DP=1577;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,22:57:99:512,0,998:25,10,15,7
chr1	12198635	.	T	C	1044.18	PASS	AC=2;AF=0.81;AN=2;DP=3240;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1998,192,0:0,0,27,37
chr1	12204354	.	A	G	2601.81	PASS	AC=2;AF=0.942;AN=2;DP=2447;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2575,201,0:0,0,10,57
chr1	12248942	.	A	G	3468.32	PASS	AC=1;AF=0.614;AN=2;DP=1976;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,40:103:99:1002,0,1541:25,38,12,28
chr1	12248965	.	A	G	2292.58	PASS	AC=1;AF=0.614;AN=2;DP=1381;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:619,0,1065:12,25,4,18
chr1	12249020	.	C	T	715.15	PASS	AC=1;AF=0.614;AN=2;DP=594;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:206,0,524:3,13,1,7
chr1	12249031	.	A	G	786.18	PASS	AC=1;AF=0.775;AN=2;DP=927;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:201,0,467:2,11,0,6
chr1	12251191	.	T	A	649.44	PASS	AC=1;AF=0.605;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant11-variant15-variant16-variant19-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:382,0,273:1,8,3,10
chr1	12251765	.	T	G	2813.6	PASS	AC=1;AF=0.591;AN=2;DP=2773;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,86:181:99:1974,0,2218:53,42,54,32
chr1	12251808	.	T	G	4140.96	PASS	AC=1;AF=0.677;AN=2;DP=5055;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,109:224:99:2471,0,2712:61,54,61,48
chr1	12252333	.	CTGTG	CTGTGTG,C,CTG	269.89	PASS	AC=1,1,0;AF=0.196,0.375,0.054;AN=2;DP=535;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:19:99:0,0,16,3
chr1	12252892	.	C	T	557.11	PASS	AC=1;AF=0.595;AN=2;DP=548;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:298,0,259:6,4,8,2
chr1	12252955	.	T	G	1345.87	PASS	AC=1;AF=0.595;AN=2;DP=1293;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:766,0,786:20,9,19,7
chr1	12253351	.	T	C	978.52	PASS	AC=1;AF=0.583;AN=2;DP=512;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant29-variant32-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:317,0,394:3,11,3,10
chr1	12254201	.	G	A	1155.02	PASS	AC=1;AF=0.605;AN=2;DP=913;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,24:64:99:695,0,1222:9,31,5,19
chr1	12261972	.	A	G	1838.79	PASS	AC=1;AF=0.579;AN=2;DP=1399;MQ=60;set=variant2-variant3-variant11-variant15-variant16-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:898,0,965:23,12,22,12
chr1	12266591	.	A	G	336.68	PASS	AC=2;AF=0.647;AN=2;DP=236;MQ=60;set=variant2-variant3-variant11-variant15-variant16-variant21-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:510,45,0:0,0,11,4
chr1	12266612	.	A	G	98.3	PASS	AC=2;AF=0.63;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:659,63,0:0,0,15,6
chr1	12267265	.	A	G	633.28	PASS	AC=1;AF=0.609;AN=2;DP=2211;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:991,0,868:14,21,11,23
chr1	12267292	.	C	T	1149.03	PASS	AC=2;AF=0.784;AN=2;DP=2126;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2146,200,0:0,0,24,43
chr1	12267999	.	C	T	114.39	PASS	AC=1;AF=0.758;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:187,0,145:4,2,4,2
chr1	12268499	.	G	A	1818.47	PASS	AC=1;AF=0.619;AN=2;DP=2938;MQ=60;set=variant5-variant8-variant11-variant13-variant14-variant15-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,78:165:99:2047,0,2120:39,48,36,42
chr1	12339619	.	A	T	658.98	PASS	AC=1;AF=0.545;AN=2;DP=1381;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant14-variant15-variant19-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant33-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,41:70:99:916,0,689:15,14,19,22
chr1	12401868	.	A	C	1869.57	PASS	AC=2;AF=0.791;AN=2;DP=4072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3364,297,0:0,0,64,35
chr1	12418700	.	T	C	247.45	PASS	AC=2;AF=0.989;AN=2;DP=1501;FS=0;MQ=60;MQRankSum=1.79;ReadPosRankSum=-0.271;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1606,132,0:0,0,8,36
chr1	12422986	.	G	A	1289.66	PASS	AC=1;AF=0.5;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant33	GT:AD:DP:GQ:PL:SB	0/1:50,50:100:99:1318,0,1506:26,24,30,20
chr1	12470019	.	T	G	802.62	PASS	AC=1;AF=0.5;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:831,0,542:14,13,11,21
chr1	12567232	.	A	G	5205.33	PASS	AC=2;AF=1;AN=2;DP=9175;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:8094,744,0:0,0,144,104
chr1	12569358	.	C	T	2536.68	PASS	AC=1;AF=0.5;AN=2;DP=905;MQ=60;set=variant15-variant22-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:154,116:270:99:2565,0,3576:81,73,64,52
chr1	12570225	.	T	A	873.73	PASS	AC=1;AF=0.5;AN=2;DP=164;MQ=60;set=variant15-variant22-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:902,0,1353:10,18,12,12
chr1	12570226	.	C	A	873.73	PASS	AC=1;AF=0.5;AN=2;DP=165;MQ=60;set=variant15-variant22-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:902,0,1353:10,18,12,12
chr1	12570579	.	C	CTG,CTGTG,CTGTGTG,CTGTGTGTGTG	473.63	PASS	AC=1,1,0,0;AF=0.547,0.07,0.012,0.012;AN=2;DP=1776;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:36:99:6,2,13,15
chr1	12571994	.	A	G	1223.85	PASS	AC=1;AF=0.5;AN=2;DP=381;MQ=60;set=variant15-variant22-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1252,0,1576:33,29,27,23
chr1	12628188	.	T	C	1183.78	PASS	AC=1;AF=0.652;AN=2;DP=1491;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1186,0,1151:23,19,25,15
chr1	12628471	.	A	C	1655.37	PASS	AC=1;AF=0.588;AN=2;DP=2919;set=variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant20-variant21-variant24-variant30-variant31-variant32-variant33-variant34-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,96:178:99:2339,0,1999:31,51,37,59
chr1	12632992	.	A	G	628	PASS	AC=1;AF=0.571;AN=2;DP=1376;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant24-variant30-variant31-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,52:120:99:1331,0,1704:30,38,19,33
chr1	12638964	.	T	C	3833.75	PASS	AC=2;AF=0.845;AN=2;DP=8071;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6207,619,0:0,0,100,107
chr1	12639018	.	C	T	3619.05	PASS	AC=1;AF=0.683;AN=2;DP=5132;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:111,115:226:99:2955,0,2879:55,56,60,55
chr1	12639168	.	A	G	4262.3	PASS	AC=2;AF=0.805;AN=2;DP=7455;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:6964,662,0:0,0,101,120
chr1	12639197	.	GCCA	G	2065.57	PASS	AC=1;AF=0.55;AN=2;DP=1594;MQ=60;set=variant9-variant12-variant15-variant16-variant20-variant21-variant24-variant30-variant31-variant34	GT:AD:DP:GQ:PL:SB	0/1:100,91:191:99:3429,0,3908:49,51,46,45
chr1	12639226	.	C	T	1392.82	PASS	AC=1;AF=0.538;AN=2;DP=1988;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant20-variant21-variant24-variant30-variant31-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,84:171:99:2190,0,2487:43,44,42,42
chr1	12640650	.	C	T	1297.02	PASS	AC=1;AF=0.538;AN=2;DP=1466;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant13-variant15-variant16-variant20-variant21-variant24-variant30-variant31-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,53:111:99:1286,0,1703:23,35,24,29
chr1	12640914	.	G	A	160.68	PASS	AC=1;AF=0.625;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant15-variant16-variant24-variant31-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:98:98,0,196:0,5,0,3
chr1	12776134	.	C	A	796.65	PASS	AC=2;AF=0.802;AN=2;DP=3538;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2945,258,0:0,0,51,35
chr1	12776218	.	A	C	5005.41	PASS	AC=2;AF=0.872;AN=2;DP=8352;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:6430,661,0:0,0,118,103
chr1	12776344	.	A	T	2228.74	PASS	AC=2;AF=0.779;AN=2;DP=9087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,237:238:99:7042,669,0:1,0,108,129
chr1	12779560	.	T	C	6294.04	PASS	AC=2;AF=0.872;AN=2;DP=6831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,191:192:99:5686,543,0:0,1,90,101
chr1	12779618	.	T	C	3901.77	PASS	AC=2;AF=0.872;AN=2;DP=4623;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4383,449,0:0,0,62,88
chr1	12785093	.	T	G	3006.34	PASS	AC=2;AF=0.837;AN=2;DP=3617;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,109:110:99:3460,319,0:0,1,66,43
chr1	12785494	.	G	T	5028.71	PASS	AC=1;AF=0.779;AN=2;DP=6667;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,93:188:99:2292,0,2422:42,53,40,53
chr1	12785749	.	C	T	1818.87	PASS	AC=1;AF=0.5;AN=2;DP=703;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant15-variant18-variant26	GT:AD:DP:GQ:PL:SB	0/1:75,65:140:99:1676,0,2058:44,31,35,30
chr1	12786070	.	A	G	1374.93	PASS	AC=1;AF=0.779;AN=2;DP=2478;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:865,0,857:10,22,13,20
chr1	12786273	.	T	C	1799.13	PASS	AC=1;AF=0.779;AN=2;DP=2670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,32:64:99:817,0,890:16,16,17,15
chr1	12786363	.	C	T	1871.6	PASS	AC=1;AF=0.779;AN=2;DP=3133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,47:86:99:1176,0,942:21,18,26,21
chr1	12786417	.	A	G	1421.88	PASS	AC=1;AF=0.779;AN=2;DP=3087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,49:91:99:1166,0,1013:21,21,24,25
chr1	12786444	.	G	A	1236.83	PASS	AC=1;AF=0.767;AN=2;DP=2961;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,50:89:99:1277,0,875:19,20,22,28
chr1	12787632	.	C	T	1817.7	PASS	AC=1;AF=0.779;AN=2;DP=2757;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,47:81:99:1284,0,785:19,15,28,19
chr1	12787980	.	A	G	1605.21	PASS	AC=1;AF=0.779;AN=2;DP=2359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:726,0,717:17,10,15,12
chr1	12788406	.	G	A	572.58	PASS	AC=2;AF=0.841;AN=2;DP=618;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,25:26:68:740,68,0:1,0,16,9
chr1	12806196	.	C	A	565.81	PASS	AC=1;AF=0.5;AN=2;DP=192;MQ=60;set=variant4-variant5-variant15-variant18-variant21-variant26	GT:AD:DP:GQ:PL:SB	0/1:23,9:32:99:181,0,570:13,10,4,5
chr1	12820870	.	T	C	1612.88	PASS	AC=2;AF=0.826;AN=2;DP=4221;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3945,345,0:0,0,41,74
chr1	12821075	.	A	G	573.37	PASS	AC=1;AF=0.5;AN=2;DP=248;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant15-variant18-variant26	GT:AD:DP:GQ:PL:SB	0/1:35,22:57:99:538,0,917:15,20,9,13
chr1	12821452	.	G	A	291.04	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant15-variant18-variant26	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:242,0,316:1,8,0,7
chr1	12821476	.	GTT	G,GT	114.33	PASS	AC=1,1;AF=0.828,0.086;AN=2;DP=251;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant40-variant41-variant43	GT:DP:GQ:SB	1/2:7:95:0,0,0,7
chr1	12822126	.	C	T	377.99	PASS	AC=1;AF=0.775;AN=2;DP=382;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:119,0,114:2,2,1,4
chr1	12823667	.	G	A	2641.79	PASS	AC=1;AF=0.756;AN=2;DP=3973;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,48:94:99:1505,0,1220:26,20,29,19
chr1	12823936	.	C	T	843.13	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.731;FractionInformativeReads=1;MQ=60;MQRankSum=1.028;QD=16.53;ReadPosRankSum=0.387;SOR=1.267;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:871,0,879:4,23,2,22
chr1	12835868	.	T	C	2269.28	PASS	AC=1;AF=0.813;AN=2;DP=4423;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,43:128:99:1152,0,2315:35,50,20,23
chr1	12837463	.	C	T	2040.24	PASS	AC=1;AF=0.556;AN=2;DP=1045;set=variant15-variant16-variant20-variant22-variant23-variant30-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,80:143:99:2068,0,1648:34,29,47,33
chr1	12837634	.	T	A,C	3692.81	PASS	AC=1,0;AF=0.793,0.012;AN=2;DP=7430;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:213:99:46,63,50,54
chr1	12837840	.	G	C	2198.78	PASS	AC=1;AF=0.813;AN=2;DP=2765;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:1105,0,1269:18,30,11,31
chr1	12853974	.	A	AT	252.05	PASS	AC=1;AF=0.5;AN=2;DP=273;set=variant2-variant10-filterInvariant12-variant15-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:61,18:79:99:614,0,2476:40,21,17,1
chr1	12853975	.	G	GCAT	292.52	PASS	AC=1;AF=0.5;AN=2;DP=277;set=variant2-variant10-filterInvariant12-variant15-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:61,22:83:99:702,0,2226:40,21,20,2
chr1	12854021	.	G	T	1422.74	PASS	AC=1;AF=0.5;AN=2;DP=4511;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:81,90:171:99:3589,0,3124:49,32,55,35
chr1	12854022	.	A	T	1506.72	PASS	AC=1;AF=0.5;AN=2;DP=4542;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:81,90:171:99:3631,0,3121:49,32,55,35
chr1	12854041	.	T	C	1681.45	PASS	AC=1;AF=0.5;AN=2;DP=5169;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,95:190:99:3722,0,3711:54,41,55,40
chr1	12854052	.	C	T	461.21	PASS	AC=1;AF=0.5;AN=2;DP=5129;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant15-variant16-variant17-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,100:199:99:3782,0,3800:54,45,55,45
chr1	12854090	.	T	A	1050.41	PASS	AC=1;AF=0.5;AN=2;DP=6252;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,99:228:99:3659,0,5182:68,61,49,50
chr1	12854097	.	T	C	1074.33	PASS	AC=1;AF=0.5;AN=2;DP=6381;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,95:226:99:3628,0,5314:71,60,48,47
chr1	12854105	.	A	G	1083.36	PASS	AC=1;AF=0.5;AN=2;DP=6261;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,85:215:99:3266,0,5188:71,59,40,45
chr1	12854162	.	C	T	73.66	PASS	AC=1;AF=0.5;AN=2;DP=479;FractionInformativeReads=1;set=filterInvariant15-variant21-filterInvariant24-filterInvariant29-variant33	GT:AD:DP:GQ:PL:SB	0/1:126,18:144:99:102,0,3402:62,64,1,17
chr1	12854188	.	T	C	61.65	PASS	AC=1;AF=0.5;AN=2;DP=771;FractionInformativeReads=1;set=filterInvariant-filterInvariant15-filterInvariant18-filterInvariant29-variant33-filterInvariant40-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:116,23:139:99:291,0,3200:54,62,8,15
chr1	12854272	.	T	C	563.41	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=8.11;FractionInformativeReads=1;MQ=41.16;MQRankSum=-3.998;QD=4.4;ReadPosRankSum=-0.179;SOR=1.221;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:96,32:128:99:592,0,2793:45,51,20,12
chr1	12854356	.	T	C	199	PASS	AC=1;AF=0.5;AN=2;DP=1067;set=filterInvariant2-filterInvariant10-variant15-variant21-variant24-variant30-variant33-filterInvariant34-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:127,34:161:99:700,0,3734:79,48,28,6
chr1	12854414	.	G	A,T	931.01	PASS	AC=1,0;AF=0.45,0.05;AN=2;DP=2023;set=variant2-filterInvariant12-variant15-variant21-filterInvariant22-variant24-variant30-variant33-variant34-variant40	GT:DP:GQ:SB	0/1:322:99:125,79,56,62
chr1	12854474	.	A	C	1762.91	PASS	AC=1;AF=0.5;AN=2;DP=1880;FractionInformativeReads=1;set=variant2-variant10-variant12-variant15-variant22-filterInvariant30-filterInvariant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:266,106:372:99:3587,0,10803:130,136,43,63
chr1	12854479	.	C	G	1720.02	PASS	AC=1;AF=0.5;AN=2;DP=1867;FractionInformativeReads=1;set=variant2-variant10-variant12-variant15-filterInvariant22-filterInvariant30-filterInvariant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:270,104:374:99:3535,0,10901:129,141,41,63
chr1	12854530	.	C	G	6594.25	PASS	AC=2;AF=0.878;AN=2;DP=7267;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,264:264:99:8006,791,0:0,0,99,165
chr1	12854842	.	G	C	60.54	PASS	AC=2;AF=0.692;AN=2;DP=260;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:318,30,0:0,0,9,1
chr1	12855835	.	C	G	4813.73	PASS	AC=2;AF=1;AN=2;DP=7367;FS=0;MQRankSum=-0.498;ReadPosRankSum=1.429;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:9172,629,0:0,0,90,117
chr1	12855845	.	G	C	4750.21	PASS	AC=2;AF=1;AN=2;DP=7147;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:9080,620,0:0,0,87,114
chr1	12856010	.	C	G	495.81	PASS	AC=1;AF=0.5;AN=2;DP=6137;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:142,162:304:99:3173,0,3064:64,78,85,77
chr1	12887054	.	T	C,G	121.14	PASS	AC=0,1;AF=0.387,0.226;AN=2;DP=1337;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:63:99:33,9,14,7
chr1	12888601	.	G	GC	982.02	PASS	AC=2;AF=0.943;AN=2;DP=2638;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3022,270,0:0,0,39,51
chr1	12888629	.	A	G	197.44	PASS	AC=1;AF=0.5;AN=2;DP=1809;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,12:85:99:101,0,2124:28,45,9,3
chr1	12898472	.	C	T	2121.05	PASS	AC=2;AF=0.932;AN=2;DP=4750;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4027,368,0:0,0,79,44
chr1	12898484	.	G	A	1133.69	PASS	AC=1;AF=0.5;AN=2;DP=476;set=variant2-variant4-variant15-variant36	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1716,0,1908:43,22,38,28
chr1	12898654	.	A	G	1164.51	PASS	AC=1;AF=0.667;AN=2;DP=5381;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,75:165:99:1801,0,2121:38,52,30,45
chr1	12898673	.	G	T	3211.34	PASS	AC=2;AF=0.85;AN=2;DP=4654;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3958,376,0:0,0,48,78
chr1	12898775	.	C	G	429.9	PASS	AC=1;AF=0.719;AN=2;DP=1121;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,16:19:78:648,0,78:0,3,3,13
chr1	12898778	.	T	A	429.9	PASS	AC=1;AF=0.719;AN=2;DP=1095;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,15:18:81:621,0,81:0,3,3,12
chr1	12898810	.	T	C	219.41	PASS	AC=2;AF=0.771;AN=2;DP=455;set=variant-variant2-filterInvariant3-filterInvariant4-variant7-variant8-filterInvariant9-filterInvariant10-variant12-filterInvariant14-variant15-filterInvariant22-variant24-filterInvariant25-variant27-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:457,45,0:0,0,3,12
chr1	12898833	.	G	C	231.03	PASS	AC=1;AF=0.694;AN=2;DP=364;FractionInformativeReads=1;set=variant2-variant3-variant6-variant7-filterInvariant9-variant12-variant15-variant21-filterInvariant22-variant23-variant28-variant29-variant33-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:85:85,0,247:3,6,0,4
chr1	12907282	.	G	C	2238.04	PASS	AC=1;AF=0.5;AN=2;DP=5163;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:78,71:149:99:2824,0,5327:57,21,46,25
chr1	12907284	.	T	C	2259.66	PASS	AC=1;AF=0.5;AN=2;DP=5276;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,73:153:99:2824,0,5327:58,22,46,27
chr1	12907285	.	G	C	2259.66	PASS	AC=1;AF=0.5;AN=2;DP=5307;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,73:153:99:2824,0,5327:58,22,46,27
chr1	12907316	.	T	C	1544	PASS	AC=1;AF=0.5;AN=2;DP=6705;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:110,79:189:99:1815,0,2883:69,41,44,35
chr1	12907350	.	C	T	2202.88	PASS	AC=1;AF=0.5;AN=2;DP=7839;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:147,70:217:99:2450,0,5954:86,61,31,39
chr1	12907351	.	A	G	2244.87	PASS	AC=1;AF=0.5;AN=2;DP=7873;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:149,68:217:99:2450,0,5954:87,62,29,39
chr1	12907370	.	A	T	1651.73	PASS	AC=1;AF=0.5;AN=2;DP=8362;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:175,60:235:99:1895,0,7122:99,76,23,37
chr1	12907379	.	T	C	1605.19	PASS	AC=1;AF=0.5;AN=2;DP=8464;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,52:233:99:1675,0,7575:101,80,17,35
chr1	12907380	.	C	A	1599.17	PASS	AC=1;AF=0.5;AN=2;DP=8458;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:182,52:234:99:1650,0,7609:101,81,17,35
chr1	12907385	.	G	A	1160.96	PASS	AC=1;AF=0.5;AN=2;DP=8540;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:192,47:239:99:1429,0,7789:104,88,13,34
chr1	12907400	.	G	A	920.56	PASS	AC=1;AF=0.5;AN=2;DP=8841;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:215,38:253:99:817,0,8558:108,107,11,27
chr1	12907408	.	T	A	876.23	PASS	AC=1;AF=0.5;AN=2;DP=9037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:225,35:260:99:767,0,8814:106,119,11,24
chr1	12907438	.	A	G	965.87	PASS	AC=1;AF=0.5;AN=2;DP=9198;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:239,45:284:99:1161,0,9614:106,133,11,34
chr1	12907446	.	C	T	924.14	PASS	AC=1;AF=0.5;AN=2;DP=8631;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:221,44:265:99:1171,0,9260:95,126,11,33
chr1	12907450	.	T	C	854.73	PASS	AC=1;AF=0.5;AN=2;DP=8225;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:217,43:260:99:1188,0,9063:93,124,11,32
chr1	12907457	.	A	G	869.79	PASS	AC=1;AF=0.5;AN=2;DP=8199;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:213,43:256:99:1245,0,8850:95,118,11,32
chr1	12907458	.	T	A	869.79	PASS	AC=1;AF=0.5;AN=2;DP=8147;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:213,42:255:99:1203,0,8853:95,118,10,32
chr1	12907465	.	A	G	701.84	PASS	AC=1;AF=0.5;AN=2;DP=7841;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:209,40:249:99:1050,0,8655:90,119,10,30
chr1	12907469	.	C	G	620.87	PASS	AC=1;AF=0.5;AN=2;DP=7529;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:203,40:243:99:1056,0,8571:87,116,10,30
chr1	12907483	.	T	A	363.88	PASS	AC=1;AF=0.5;AN=2;DP=6256;FractionInformativeReads=1;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-variant26-filterInvariant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:189,34:223:99:523,0,5337:80,109,9,25
chr1	12907495	.	T	C	501.08	PASS	AC=1;AF=0.5;AN=2;DP=5918;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant26-filterInvariant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:179,32:211:99:799,0,7429:75,104,9,23
chr1	12907498	.	C	T	459.09	PASS	AC=1;AF=0.5;AN=2;DP=5811;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant26-filterInvariant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:177,32:209:99:802,0,7420:74,103,9,23
chr1	12907507	.	C	T	399.17	PASS	AC=1;AF=0.5;AN=2;DP=5737;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant26-filterInvariant27-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:166,31:197:99:790,0,7045:68,98,9,22
chr1	12907508	.	T	C	399.17	PASS	AC=1;AF=0.5;AN=2;DP=5666;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant26-variant27-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:164,31:195:99:793,0,7003:66,98,9,22
chr1	12907513	.	T	C	411.21	PASS	AC=1;AF=0.5;AN=2;DP=5027;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant26-variant27-variant29-variant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:157,31:188:99:841,0,6706:64,93,9,22
chr1	12907518	.	T	A	489.32	PASS	AC=1;AF=0.5;AN=2;DP=4806;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-variant26-variant27-variant29-variant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:147,34:181:99:939,0,4325:62,85,11,23
chr1	12907519	.	C	A	495.34	PASS	AC=1;AF=0.5;AN=2;DP=4895;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-variant26-variant27-variant29-variant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:146,32:178:99:877,0,6202:60,86,10,22
chr1	12907777	.	T	C	1518.56	PASS	AC=1;AF=0.5;AN=2;DP=11165;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,55:261:99:1764,0,8447:101,105,43,12
chr1	12907781	.	T	C	1677.44	PASS	AC=1;AF=0.5;AN=2;DP=11263;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:204,58:262:99:1842,0,8573:100,104,45,13
chr1	12907798	.	A	C	2285.86	PASS	AC=1;AF=0.5;AN=2;DP=11893;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:200,78:278:99:2772,0,8532:99,101,59,19
chr1	12907802	.	C	T	2446.31	PASS	AC=1;AF=0.5;AN=2;DP=12057;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:196,85:281:99:2983,0,8222:98,98,64,21
chr1	12907803	.	C	T	2446.31	PASS	AC=1;AF=0.5;AN=2;DP=12131;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,86:280:99:2999,0,8012:98,96,65,21
chr1	12907829	.	T	C	1402.11	PASS	AC=1;AF=0.5;AN=2;DP=2756;set=variant10-variant14-variant15-variant22-variant27-variant31-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:253,90:343:99:1856,0,8873:151,102,46,44
chr1	12907837	.	C	T	4253.12	PASS	AC=1;AF=0.5;AN=2;DP=15041;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:193,156:349:99:3841,0,6214:96,97,104,52
chr1	12907885	.	T	C	4558.15	PASS	AC=1;AF=0.5;AN=2;DP=21324;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:272,231:503:99:5581,0,6811:165,107,129,102
chr1	12908236	.	G	T	2708.3	PASS	AC=1;AF=0.5;AN=2;DP=8491;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:124,70:194:99:2476,0,4927:32,92,11,59
chr1	12908243	.	A	G	2396.39	PASS	AC=1;AF=0.5;AN=2;DP=7338;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,57:169:99:2140,0,4645:26,86,8,49
chr1	12908278	.	C	A	347.04	PASS	AC=1;AF=0.5;AN=2;DP=3274;set=variant-variant3-variant4-variant5-variant6-filterInvariant7-variant10-filterInvariant11-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant30-variant31-filterInvariant32-variant33-variant34-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:75,21:96:99:495,0,2453:9,66,0,21
chr1	12919081	.	C	T	1436.42	PASS	AC=1;AF=0.5;AN=2;DP=998;FractionInformativeReads=1;set=variant10-variant14-variant15-variant22-variant27-variant31-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,72:137:99:1731,0,1524:30,35,30,42
chr1	12919422	.	T	C	184.57	PASS	AC=1;AF=0.5;AN=2;DP=1640;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:1393,0,1380:28,8,26,10
chr1	12919423	.	G	A	184.57	PASS	AC=1;AF=0.5;AN=2;DP=1636;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:1393,0,1380:28,8,26,10
chr1	12919458	.	A	AT	34.18	PASS	AC=1;AF=0.5;AN=2;DP=280;set=filterInvariant2-variant15-filterInvariant30-variant40	GT:AD:DP:GQ:PL:SB	0/1:78,25:103:99:831,0,3189:49,29,15,10
chr1	12919459	.	G	GCAT	39.25	PASS	AC=1;AF=0.5;AN=2;DP=286;set=filterInvariant2-variant15-variant30-variant40	GT:AD:DP:GQ:PL:SB	0/1:70,28:98:99:966,0,2687:47,23,15,13
chr1	12919482	.	G	C	54.06	PASS	AC=1;AF=0.5;AN=2;DP=2985;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-filterInvariant9-variant11-filterInvariant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,37:125:99:1042,0,2337:55,33,19,18
chr1	12919505	.	G	T	46.12	PASS	AC=1;AF=0.5;AN=2;DP=3373;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,31:136:99:986,0,4316:63,42,14,17
chr1	12919506	.	A	T	43.12	PASS	AC=1;AF=0.5;AN=2;DP=3388;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,31:136:99:986,0,4316:63,42,14,17
chr1	12919511	.	C	T,A	37.11	PASS	AC=1,0;AF=0.457,0.057;AN=2;DP=3589;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-variant24-variant25-filterInvariant26-variant27-variant29-variant30-variant32-variant33-variant34-filterInvariant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:137:99:63,44,13,17
chr1	12919536	.	C	T	232.5	PASS	AC=1;AF=0.5;AN=2;DP=598;FractionInformativeReads=1;set=variant5-filterInvariant7-variant15-filterInvariant27-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:135,19:154:99:365,0,3757:78,57,1,18
chr1	12919574	.	T	A	177.33	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=295;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:156,16:172:99:190,0,6404:82,74,0,16
chr1	12919581	.	T	C	132.49	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=289;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:150,15:165:99:172,0,6253:78,72,0,15
chr1	12919587	.	T	C	51.52	PASS	AC=1;AF=0.567;AN=2;DP=1719;set=filterInvariant5-variant10-variant13-variant14-variant15-variant16-variant20-variant22-variant27-variant30-variant31-variant32-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,94:161:99:2588,0,1576:34,33,43,51
chr1	12919589	.	A	G	57.54	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=280;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:149,13:162:97:97,0,6160:77,72,0,13
chr1	12919983	.	G	A	2148.78	PASS	AC=1;AF=0.556;AN=2;DP=1299;MQ=60;set=variant10-variant14-variant15-variant22-variant27-variant31-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,75:161:99:1894,0,2255:42,44,35,40
chr1	12920381	.	GT	G	165.59	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;set=variant14-variant15-variant22-variant27-variant31-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:410,0,159:4,3,7,7
chr1	12921127	.	A	G	2722.16	PASS	AC=1;AF=0.556;AN=2;DP=2951;set=variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant27-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,105:184:99:2532,0,1999:45,34,57,48
chr1	12921332	.	T	C	151.83	PASS	AC=1;AF=0.521;AN=2;DP=5495;set=filterInvariant-filterInvariant8-variant10-variant14-variant15-variant16-filterInvariant18-variant20-variant21-variant22-variant24-variant25-variant27-filterInvariant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,136:256:99:5257,0,7270:55,65,61,75
chr1	12921333	.	G	A	2885.44	PASS	AC=1;AF=0.529;AN=2;DP=3803;set=variant10-variant14-variant15-variant16-variant20-variant21-variant22-filterInvariant24-variant27-variant30-variant31-variant32-filterInvariant33-variant34-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,133:257:99:5257,0,7270:56,68,58,75
chr1	12939546	.	C	CG	2787.34	PASS	AC=1;AF=0.556;AN=2;DP=2043;set=variant10-variant14-variant15-variant22-variant27-variant31-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:147,99:246:99:2304,0,3825:77,70,48,51
chr1	12939568	.	C	G	2324.36	PASS	AC=1;AF=0.55;AN=2;DP=2143;set=variant10-variant14-variant15-variant22-variant27-variant31-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,94:256:99:1933,0,3858:80,82,40,54
chr1	12939655	.	T	G	2081.91	PASS	AC=1;AF=0.556;AN=2;DP=1254;set=filterInvariant10-variant14-variant15-variant22-variant27-variant31-variant37-filterInvariant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,64:179:99:1267,0,2814:47,68,29,35
chr1	12940016	.	C	A	64.8	PASS	AC=1;AF=0.5;AN=2;DP=248;FractionInformativeReads=1;set=filterInvariant2-variant5-variant13-variant15-variant16-variant27-variant32-filterInvariant37-variant38-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:74:74,0,434:2,14,2,3
chr1	12941742	.	G	A	2476.01	PASS	AC=1;AF=0.556;AN=2;DP=1428;FractionInformativeReads=1;set=variant10-variant14-variant15-variant22-variant27-variant31-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,97:219:99:2051,0,3023:78,44,60,37
chr1	12942275	.	G	A	211.07	PASS	AC=1;AF=0.5;AN=2;DP=1580;set=filterInvariant2-filterInvariant5-variant10-filterInvariant13-filterInvariant15-filterInvariant20-filterInvariant27-filterInvariant37-filterInvariant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:184,33:217:99:311,0,4613:74,110,21,12
chr1	12942289	.	C	A	1662.99	PASS	AC=1;AF=0.5;AN=2;DP=7068;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,45:219:99:477,0,6242:73,101,23,22
chr1	12942306	.	C	T	1711.38	PASS	AC=1;AF=0.5;AN=2;DP=6123;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,76:192:99:2210,0,2711:40,76,39,37
chr1	12942339	.	C	T	47.95	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=149;FS=0.949;FractionInformativeReads=1;MQ=43.58;MQRankSum=-4.374;QD=0.32;ReadPosRankSum=1.256;SOR=0.814;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:129,20:149:76:76,0,3299:44,85,6,14
chr1	12942384	.	T	C	164.99	PASS	AC=1;AF=0.5;AN=2;DP=2412;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant20-filterInvariant21-filterInvariant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,11:91:70:70,0,2367:18,62,1,10
chr1	12942414	.	G	T	101.4	PASS	AC=1;AF=0.5;AN=2;DP=1677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:875,0,999:5,24,7,20
chr1	12942430	.	G	C	271.56	PASS	AC=1;AF=0.5;AN=2;DP=706;set=variant2-variant5-filterInvariant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant30-filterInvariant32-variant34-variant35-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:649,0,620:2,14,1,14
chr1	12942842	.	G	A	151.77	PASS	AC=1;AF=0.583;AN=2;DP=51;FractionInformativeReads=1;set=variant10-variant15-variant22-variant27-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:327,0,339:3,0,6,2
chr1	12942858	.	C	T	233.53	PASS	AC=1;AF=0.6;AN=2;DP=126;FractionInformativeReads=1;set=variant10-variant15-variant16-variant20-variant22-variant27-variant30-variant31-variant32-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:350,0,513:5,0,6,2
chr1	12942862	.	G	C	37.72	PASS	AC=1;AF=0.688;AN=2;DP=564;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:347,0,545:6,0,7,2
chr1	12943038	.	A	C	515.27	PASS	AC=1;AF=0.538;AN=2;DP=766;FractionInformativeReads=1;set=variant10-variant14-variant15-variant16-filterInvariant20-variant22-variant27-variant30-variant31-variant32-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,27:86:99:617,0,1591:30,29,13,14
chr1	12955054	.	G	A	109.02	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=455;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:32,4:36:72:72,0,1463:11,21,1,3
chr1	12955055	.	C	G	109.02	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=446;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:30,4:34:72:72,0,1463:10,20,1,3
chr1	12979729	.	G	A	246.06	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2256;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:86,28:114:99:393,0,1957:49,37,16,12
chr1	12979845	.	T	C	204.98	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1628;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:68,24:92:99:333,0,1477:26,42,10,14
chr1	12987833	.	A	G	143.71	PASS	AC=1;AF=0.5;AN=2;DP=734;FractionInformativeReads=1;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant20-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant38-filterInvariant39-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:72:72,0,221:6,4,4,0
chr1	12987951	.	C	T	97.77	DRAGENHardSNP	AC=1;AF=0.516;AN=2;DP=3156;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:56,23:79:99:325,0,1149:28,28,12,11
chr1	13001186	.	C	T	3619.63	PASS	AC=1;AF=0.58;AN=2;DP=8347;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1587,0,1795:54,17,54,16
chr1	13001312	.	C	G	6578.48	PASS	AC=1;AF=0.557;AN=2;DP=21542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:219,188:407:99:3809,0,4630:90,129,77,111
chr1	13001414	.	G	A	199.47	PASS	AC=1;AF=0.5;AN=2;DP=1341;set=filterInvariant2-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-filterInvariant26-variant27-filterInvariant30-filterInvariant32-filterInvariant37	GT:AD:DP:GQ:PL:SB	0/1:65,34:99:99:624,0,1951:4,61,11,23
chr1	13001418	.	C	A	222.95	PASS	AC=1;AF=0.5;AN=2;DP=2397;set=filterInvariant2-variant4-variant5-variant6-variant7-variant8-variant13-variant15-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,24:84:99:545,0,1949:7,53,1,23
chr1	13001428	.	C	A	1430.99	PASS	AC=1;AF=0.545;AN=2;DP=2511;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:18,25:43:99:770,0,688:1,17,1,24
chr1	13001445	.	C	T	792.11	PASS	AC=1;AF=0.536;AN=2;DP=1222;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:241,0,119:0,5,0,9
chr1	13001465	.	G	T	170.82	PASS	AC=1;AF=0.657;AN=2;DP=491;set=variant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-variant9-filterInvariant11-filterInvariant14-variant15-filterInvariant17-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:69:93,0,69:0,2,0,4
chr1	13001478	.	C	T	34.97	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=33.53;MQRankSum=-1.537;QD=5.83;ReadPosRankSum=-0.988;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:63:63,0,102:0,3,0,3
chr1	13001489	.	C	G	232.09	PASS	AC=1;AF=0.5;AN=2;DP=142;FractionInformativeReads=1;set=variant4-filterInvariant5-variant6-variant15-filterInvariant17-variant19-filterInvariant22-variant24-variant25-filterInvariant31-filterInvariant34-filterInvariant37-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:69:69,0,110:0,4,0,2
chr1	13013308	.	T	C	1504.88	DRAGENHardSNP	AC=2;AF=0.9;AN=2;DP=235;FS=0;FractionInformativeReads=1;MQRankSum=-1.801;ReadPosRankSum=-2.525;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:1807,221,0:0,0,38,36
chr1	13013424	.	C	T	37.18	DRAGENHardSNP	AC=2;AF=0.833;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQRankSum=1.179;ReadPosRankSum=-0.762;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:273,27,0:0,0,0,9
chr1	13013436	.	G	C	196.77	DRAGENHardSNP	AC=2;AF=0.75;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQRankSum=0.736;ReadPosRankSum=0.736;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	13013439	.	A	T	196.77	DRAGENHardSNP	AC=2;AF=0.75;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQRankSum=0.727;ReadPosRankSum=0.727;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	13036587	.	C	T	2233.04	DRAGENHardSNP	AC=2;AF=0.716;AN=2;DP=6391;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3178,391,0:0,0,65,66
chr1	13052789	.	G	A	2658.26	PASS	AC=1;AF=0.524;AN=2;DP=9927;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,91:281:99:1803,0,4826:111,79,50,41
chr1	13052871	.	C	T	3063.1	PASS	AC=1;AF=0.524;AN=2;DP=12047;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:241,105:346:99:3243,0,10031:110,131,44,61
chr1	13052907	.	T	C	5232.75	PASS	AC=1;AF=0.636;AN=2;DP=10166;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:212,83:295:99:2882,0,9179:85,127,27,56
chr1	13141835	.	C	T	567.97	DRAGENHardSNP	AC=1;AF=0.733;AN=2;DP=1254;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:456,0,272:4,10,5,16
chr1	13172503	.	C	T	504.85	PASS	AC=1;AF=0.5;AN=2;DP=293;FractionInformativeReads=1;set=variant2-variant10-variant11-variant13-variant15-variant20-variant40	GT:AD:DP:GQ:PL:SB	0/1:28,42:70:99:1110,0,743:8,20,15,27
chr1	13182899	.	A	G	282.1	PASS	AC=1;AF=0.5;AN=2;DP=443;set=variant2-variant3-variant4-filterInvariant5-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant23-variant24-variant26-filterInvariant30-variant37-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:282,0,441:11,2,8,2
chr1	13183199	.	C	G	62.15	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2739;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:206,16:222:88:88,0,78991:85,121,11,5
chr1	13183213	.	T	A	84	PASS	AC=1;AF=0.5;AN=2;DP=3582;set=filterInvariant2-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant14-filterInvariant15-filterInvariant19-filterInvariant21-variant23-variant25-variant27-filterInvariant29-filterInvariant33-filterInvariant35-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:177,22:199:99:403,0,73920:71,106,16,6
chr1	13183225	.	T	C	395.99	PASS	AC=1;AF=0.5;AN=2;DP=6346;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant23-variant25-filterInvariant26-variant27-variant29-filterInvariant30-filterInvariant33-filterInvariant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:163,25:188:99:583,0,68655:67,96,19,6
chr1	13183228	.	C	T	428.95	PASS	AC=1;AF=0.5;AN=2;DP=6429;set=variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant29-filterInvariant30-filterInvariant33-variant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:157,26:183:99:640,0,66786:67,90,20,6
chr1	13183237	.	C	T	659.97	PASS	AC=1;AF=0.5;AN=2;DP=6293;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,30:170:99:814,0,61692:58,82,24,6
chr1	13183238	.	T	C	662.98	PASS	AC=1;AF=0.5;AN=2;DP=6250;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,30:170:99:820,0,61124:58,82,24,6
chr1	13183243	.	T	C	765.02	PASS	AC=1;AF=0.5;AN=2;DP=6019;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,30:156:99:889,0,57128:53,73,24,6
chr1	13183248	.	T	A	825.08	PASS	AC=1;AF=0.5;AN=2;DP=5844;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,32:146:99:967,0,50536:46,68,25,7
chr1	13183249	.	C	A	828.09	PASS	AC=1;AF=0.5;AN=2;DP=5802;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant23-variant24-variant25-variant26-filterInvariant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,31:145:99:976,0,49546:45,69,24,7
chr1	13183422	.	T	C	1128.38	PASS	AC=1;AF=0.5;AN=2;DP=2947;set=variant2-variant10-variant11-variant13-variant15-variant20-variant40	GT:AD:DP:GQ:PL:SB	0/1:315,97:412:99:1670,0,9325:165,150,55,42
chr1	13183439	.	T	C	9192.24	PASS	AC=1;AF=0.784;AN=2;DP=18306;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:93,330:423:99:9792,0,1530:50,43,173,157
chr1	13183511	.	T	C	5032.46	PASS	AC=1;AF=0.5;AN=2;DP=15315;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:220,155:375:99:5318,0,8805:112,108,53,102
chr1	13183528	.	A	C	4481.77	PASS	AC=1;AF=0.5;AN=2;DP=13615;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:210,120:330:99:4598,0,9015:103,107,33,87
chr1	13183532	.	C	T	4088.45	PASS	AC=1;AF=0.5;AN=2;DP=13070;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:208,114:322:99:4185,0,8959:103,105,31,83
chr1	13183533	.	C	T	3845.54	PASS	AC=1;AF=0.5;AN=2;DP=12987;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:207,113:320:99:4188,0,8917:102,105,31,82
chr1	13183567	.	C	T	1419.8	PASS	AC=1;AF=0.5;AN=2;DP=9944;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:210,52:262:99:1503,0,8941:107,103,5,47
chr1	13183573	.	G	T	1352.33	PASS	AC=1;AF=0.5;AN=2;DP=9611;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,48:264:99:1355,0,9032:110,106,5,43
chr1	13183973	.	G	A	823.72	PASS	AC=1;AF=0.5;AN=2;DP=2851;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-filterInvariant10-variant11-variant13-variant14-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,16:105:99:202,0,2878:24,65,4,12
chr1	13219149	.	G	A	1550.94	PASS	AC=1;AF=0.5;AN=2;DP=13062;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant32-filterInvariant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:235,63:298:99:1048,0,5480:82,153,13,50
chr1	13379179	.	C	T	220.43	DRAGENHardSNP	AC=1;AF=0.8;AN=2;DP=131;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:123,0,237:7,3,4,1
chr1	13379394	.	T	C	121.09	DRAGENHardSNP	AC=1;AF=0.833;AN=2;DP=124;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:189,0,139:1,5,2,6
chr1	13414069	.	G	C	515.82	DRAGENHardSNP	AC=1;AF=0.6;AN=2;DP=996;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:65,39:104:99:654,0,1271:32,33,19,20
chr1	13414082	.	T	C	1048.45	DRAGENHardSNP	AC=1;AF=0.567;AN=2;DP=1854;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:61,43:104:99:1544,0,1142:30,31,21,22
chr1	13414089	.	G	A	1048.45	DRAGENHardSNP	AC=1;AF=0.591;AN=2;DP=1012;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:64,39:103:99:652,0,2468:31,33,19,20
chr1	13414145	.	A	C	536.92	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=227;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:562,0,674:15,21,13,17
chr1	13414185	.	T	C	63.16	DRAGENHardSNP	AC=1;AF=0.571;AN=2;DP=130;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:232,0,195:2,7,1,9
chr1	13448180	.	A	G	496.53	DRAGENHardSNP	AC=2;AF=0.86;AN=2;DP=514;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:2,31:33:12:1350,12,0:1,1,31,0
chr1	13448184	.	C	T	652.76	DRAGENHardSNP	AC=2;AF=0.86;AN=2;DP=632;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:2,35:37:34:1614,34,0:1,1,35,0
chr1	13448185	.	G	C	229.49	DRAGENHardSNP	AC=2;AF=0.703;AN=2;DP=607;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:2,39:41:34:1614,34,0:1,1,39,0
chr1	13448199	.	C	T	856.08	DRAGENHardSNP	AC=2;AF=0.966;AN=2;DP=1358;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:2,67:69:99:1924,157,0:1,1,56,11
chr1	13448283	.	A	G	2587.19	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=5361;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:6118,742,0:0,0,120,128
chr1	13448303	.	A	C	1384.92	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=966;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:46,200:246:99:4196,0,401:23,23,95,105
chr1	13448351	.	T	C	1765.7	DRAGENHardSNP	AC=1;AF=0.943;AN=2;DP=3647;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:134,30:164:99:299,0,3255:41,93,12,18
chr1	13695787	.	C	G	1574.97	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=2527;FS=0;MQRankSum=-2.1;ReadPosRankSum=-0.853;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1511,126,0:0,0,33,8
chr1	13695794	.	T	A	405.96	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=47;FS=3.143;FractionInformativeReads=1;MQ=28.15;MQRankSum=0.358;QD=8.64;ReadPosRankSum=1.29;SOR=1.463;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:434,0,650:20,8,16,3
chr1	13695816	.	G	A	2318.89	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=4360;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2135,207,0:0,0,44,25
chr1	13695974	.	T	C	960.66	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=2019;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1099,120,0:0,0,11,29
chr1	13716842	.	G	A	507.08	DRAGENHardSNP	AC=1;AF=0.583;AN=2;DP=602;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:38,13:51:99:227,0,844:22,16,10,3
chr1	13716855	.	T	C	685.71	DRAGENHardSNP	AC=1;AF=0.583;AN=2;DP=689;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:41,18:59:99:280,0,839:25,16,10,8
chr1	13718590	.	C	T	945.95	DRAGENHardSNP	AC=2;AF=0.833;AN=2;DP=522;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1098,78,0:0,0,11,15
chr1	13718602	.	G	A	896.5	DRAGENHardSNP	AC=2;AF=0.833;AN=2;DP=470;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:72:1049,72,0:0,0,8,15
chr1	13801879	.	A	G	746.34	PASS	AC=1;AF=0.5;AN=2;DP=162;MQ=60;set=variant15-variant20-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:775,0,391:9,9,17,11
chr1	13802325	.	T	C	1027.84	PASS	AC=1;AF=0.565;AN=2;DP=2605;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant20-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1311,0,1515:27,23,19,28
chr1	13802373	.	G	A	801.3	PASS	AC=1;AF=0.5;AN=2;DP=311;MQ=60;set=variant15-variant20-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:53,33:86:99:830,0,1507:31,22,13,20
chr1	13802437	.	G	A	1548.5	PASS	AC=1;AF=0.531;AN=2;DP=1399;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant11-variant15-variant17-variant20-variant25-variant29-variant30-variant33-variant34-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,47:104:99:1127,0,1555:30,27,21,26
chr1	13802722	.	GA	G	176.46	PASS	AC=1;AF=0.5;AN=2;DP=304;MQ=60;set=variant6-filterInvariant8-variant9-variant12-variant15-variant22-variant24-variant25-variant28-variant29-variant33-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:100,0,390:5,13,4,3
chr1	13802818	.	T	G	101.09	PASS	AC=1;AF=0.594;AN=2;DP=121;FractionInformativeReads=1;set=variant3-variant4-variant5-variant11-variant13-variant15-variant16-variant22-variant26-variant29-variant31-variant34-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:140,0,199:2,4,2,3
chr1	13909912	.	A	C	1253.61	PASS	AC=2;AF=0.717;AN=2;DP=2740;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant28-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3301,383,0:0,0,62,66
chr1	13910152	.	C	T	5474.69	PASS	AC=1;AF=0.536;AN=2;DP=2088;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant28-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:93,96:189:99:2095,0,2054:56,37,59,37
chr1	13910417	.	C	T	2735.02	PASS	AC=1;AF=0.643;AN=2;DP=5391;set=variant-variant7-variant8-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant24-variant25-variant30-variant32-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:159,186:345:99:4352,0,3705:83,76,97,89
chr1	13937281	.	T	C	229.81	PASS	AC=1;AF=0.763;AN=2;DP=619;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:57:335,0,57:1,2,2,8
chr1	13940365	.	CTTT	CT,CTT,CTTTT,C	63.86	PASS	AC=0,1,0,0;AF=0.22,0.42,0.02,0.02;AN=2;DP=552;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-filterInvariant31-variant33-variant34-variant35-variant38-variant39-variant40	GT:DP:GQ:SB	0/2:10:20:1,2,2,5
chr1	13940864	.	C	G	5238.77	PASS	AC=2;AF=0.943;AN=2;DP=8146;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6508,632,0:0,0,108,103
chr1	13943185	.	G	A	524.37	PASS	AC=1;AF=0.5;AN=2;DP=730;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant18-variant19-variant24-variant25-variant30-variant31-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:1023,0,1036:15,19,16,24
chr1	13943528	.	A	C	2232.13	PASS	AC=1;AF=0.5;AN=2;DP=2724;MQ=60;set=variant7-variant12-variant15-variant18-variant19-variant24-variant25-variant30-variant31-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,94:216:99:2186,0,3078:61,61,45,49
chr1	13943653	.	AT	A,ATT	245.53	PASS	AC=1,0;AF=0.733,0.012;AN=2;DP=2028;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:50:99:6,19,7,18
chr1	13944236	.	C	CTT	1897.62	PASS	AC=2;AF=0.977;AN=2;DP=2092;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2610,174,0:0,0,33,25
chr1	13944568	.	T	C	160.63	PASS	AC=1;AF=0.789;AN=2;DP=110;FS=0;MQ=60;set=variant2-variant3-variant4-variant10-variant11-variant15-variant16-variant17-variant18-variant24-variant25-variant27-variant31-variant34-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:141,0,110:1,3,2,3
chr1	14031732	.	G	C	3749.47	PASS	AC=1;AF=0.821;AN=2;DP=4024;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,69:135:99:1966,0,1782:41,25,44,25
chr1	14031756	.	A	C	4514.47	PASS	AC=1;AF=0.805;AN=2;DP=4949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,95:185:99:2577,0,2207:57,33,57,38
chr1	14031814	.	TC	T	2219.24	PASS	AC=1;AF=0.538;AN=2;DP=4057;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant22-variant26-variant28-variant29-variant30-variant31-variant33-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,122:243:99:4032,0,4114:66,55,65,57
chr1	14042309	.	G	A	422.75	PASS	AC=1;AF=0.559;AN=2;DP=515;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant15-variant16-variant20-variant24-variant25-variant27-variant28-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:531,0,539:3,13,3,13
chr1	14057258	.	G	A	263.87	PASS	AC=1;AF=0.559;AN=2;DP=354;set=variant2-variant4-variant6-variant7-variant12-variant15-variant16-variant20-variant24-variant25-variant27-variant28-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:351,0,203:7,3,9,4
chr1	14059395	.	T	C	789.49	PASS	AC=1;AF=0.559;AN=2;DP=1070;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant15-variant16-variant20-variant24-variant25-variant27-variant28-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:794,0,784:14,17,12,21
chr1	14096821	.	T	C	735.81	PASS	AC=1;AF=0.556;AN=2;DP=1260;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant15-variant16-variant20-variant24-variant25-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:606,0,1046:14,24,12,18
chr1	14099763	.	C	T	807.01	PASS	AC=1;AF=0.643;AN=2;DP=1519;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant10-variant12-variant15-variant16-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:44,39:83:99:1090,0,1213:12,32,9,30
chr1	14105139	.	T	A	1270.61	PASS	AC=1;AF=0.65;AN=2;DP=3165;MQ=60;set=variant2-variant6-variant7-variant10-variant12-variant15-variant16-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:95,87:182:99:2182,0,2338:46,49,36,51
chr1	14105298	.	G	A	1471.28	PASS	AC=1;AF=0.643;AN=2;DP=2355;MQ=60;set=variant2-variant4-variant6-variant7-variant10-variant12-variant15-variant16-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:83,48:131:99:1148,0,2314:44,39,24,24
chr1	14106394	.	A	ACTC	1862.76	PASS	AC=1;AF=0.62;AN=2;DP=2588;set=variant2-variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,72:137:99:2810,0,2960:35,30,40,32
chr1	14109114	.	A	G	1240.69	PASS	AC=1;AF=0.643;AN=2;DP=1540;MQ=60;set=variant2-variant4-variant6-variant7-variant10-variant12-variant15-variant16-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1132,0,1104:24,26,22,21
chr1	14109408	.	CTT	CT,CTTT,C	206.22	PASS	AC=1,0,0;AF=0.459,0.027,0.014;AN=2;DP=2204;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant8-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant20-filterInvariant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:82:99:22,32,14,14
chr1	14114377	.	T	TGA	4136.23	PASS	AC=1;AF=0.5;AN=2;DP=321;FS=2.571;FractionInformativeReads=0.888;MQ=60;MQRankSum=-0.132;QD=12.89;ReadPosRankSum=0.878;SOR=0.757;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:152,133:285:99:4173,0,4936:78,74,63,70
chr1	14143003	.	A	G	1398.41	PASS	AC=2;AF=0.857;AN=2;DP=4996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4390,430,0:0,0,75,69
chr1	14149505	.	C	A	338.05	PASS	AC=1;AF=0.829;AN=2;DP=907;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:257,0,424:10,5,7,3
chr1	14149601	.	C	T	2646.16	PASS	AC=1;AF=0.829;AN=2;DP=4292;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,62:143:99:1470,0,2332:56,25,39,23
chr1	14149622	.	T	C	3249.12	PASS	AC=1;AF=0.829;AN=2;DP=5297;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,76:165:99:1789,0,2374:59,30,47,29
chr1	14149767	.	C	T	2146.36	PASS	AC=1;AF=0.5;AN=2;DP=165;FS=3.676;FractionInformativeReads=1;MQ=60;MQRankSum=-0.699;QD=13.01;ReadPosRankSum=3.093;SOR=0.444;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:80,85:165:99:2175,0,2153:30,50,38,47
chr1	14149844	.	T	A	3251.91	PASS	AC=1;AF=0.829;AN=2;DP=4396;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,80:151:99:2990,0,2704:35,36,39,41
chr1	14149854	.	G	A	2916.07	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=1.293;FractionInformativeReads=1;MQ=60;MQRankSum=0.84;QD=19.84;ReadPosRankSum=-1.592;SOR=0.828;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:70,77:147:99:2944,0,2675:35,35,36,41
chr1	14150115	.	C	T	926.14	PASS	AC=1;AF=0.5;AN=2;DP=230;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant21	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:954,0,1291:14,19,17,16
chr1	14150116	.	C	T	2186.87	PASS	AC=1;AF=0.829;AN=2;DP=2927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:944,0,1278:17,16,14,19
chr1	14150138	.	C	T	1277.06	PASS	AC=1;AF=0.5;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:994,0,990:20,15,16,17
chr1	14150191	.	G	A	1041.62	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.173;QD=10.96;ReadPosRankSum=-0.287;SOR=0.755;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:49,46:95:99:1070,0,1243:28,21,27,19
chr1	14150505	.	T	C	1064.85	PASS	AC=1;AF=0.829;AN=2;DP=1732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:547,0,678:12,15,10,13
chr1	14150709	.	C	T	4528.28	PASS	AC=2;AF=0.866;AN=2;DP=3772;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:5305,358,0:0,0,71,45
chr1	14150714	.	G	A	4589.4	PASS	AC=2;AF=0.866;AN=2;DP=3864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:5485,373,0:0,0,78,46
chr1	14150740	.	G	T	4073.98	PASS	AC=2;AF=0.866;AN=2;DP=4782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5351,457,0:0,0,104,49
chr1	14150992	.	T	C	4915.78	PASS	AC=2;AF=0.866;AN=2;DP=6177;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:6116,551,0:0,0,61,123
chr1	14151277	.	A	C	831.2	PASS	AC=1;AF=0.5;AN=2;DP=434;MQ=60;set=variant3-variant7-variant8-variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:1108,0,1161:23,23,22,23
chr1	14219038	.	T	C	747.07	PASS	AC=2;AF=0.929;AN=2;DP=848;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:641,60,0:0,0,13,7
chr1	14219864	.	C	A	804.2	PASS	AC=2;AF=0.917;AN=2;DP=1808;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:977,84,0:0,0,17,11
chr1	14925105	.	T	G	443.87	PASS	AC=2;AF=0.813;AN=2;DP=749;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:678,69,0:0,0,14,9
chr1	15386628	.	T	C	1813.83	PASS	AC=1;AF=0.5;AN=2;DP=1936;MQ=60;set=variant-variant2-variant5-variant10-variant14-variant15-variant16-variant17-variant26-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,108:204:99:2823,0,2316:54,42,60,48
chr1	15390145	.	A	G	666.88	PASS	AC=1;AF=0.571;AN=2;DP=1461;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,54:104:99:1862,0,2529:23,27,24,30
chr1	15390178	.	C	T	583.55	PASS	AC=1;AF=0.571;AN=2;DP=1097;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1603,0,2555:16,26,16,25
chr1	15390211	.	G	A	130.7	PASS	AC=1;AF=0.571;AN=2;DP=711;set=variant-variant2-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:914,0,1986:12,19,9,15
chr1	15427783	.	G	T	75.23	PASS	AC=1;AF=0.545;AN=2;DP=129;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant15-variant16-variant20-variant23-variant27-variant28-variant33-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:83:242,0,83:3,1,5,2
chr1	15427852	.	A	AT	224.98	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:262,0,389:9,6,7,4
chr1	15427934	.	C	T	467.66	PASS	AC=1;AF=0.667;AN=2;DP=2543;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,34:79:99:751,0,1245:25,20,20,14
chr1	15427982	.	G	A	602.89	PASS	AC=1;AF=0.725;AN=2;DP=3661;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,50:98:99:1237,0,1285:28,20,27,23
chr1	15428358	.	T	C	608.04	PASS	AC=2;AF=0.943;AN=2;DP=2827;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2111,180,0:0,0,21,39
chr1	15428508	.	C	T	184.18	PASS	AC=1;AF=0.556;AN=2;DP=343;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:245,0,221:1,5,2,9
chr1	15438990	.	G	A	827.32	PASS	AC=1;AF=0.56;AN=2;DP=3389;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,84:164:99:1891,0,1876:38,42,41,43
chr1	15439083	.	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	1950.63	PASS	AC=1;AF=0.684;AN=2;DP=3492;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,47:87:99:1674,0,8611:15,25,15,32
chr1	15441275	.	C	T	269.01	PASS	AC=1;AF=0.686;AN=2;DP=1235;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:507,0,476:7,9,8,13
chr1	15441494	.	G	A	652.82	PASS	AC=1;AF=0.686;AN=2;DP=2286;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,37:70:99:988,0,942:16,17,19,18
chr1	15441926	.	C	T	636.82	PASS	AC=1;AF=0.686;AN=2;DP=2981;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,59:96:99:1627,0,986:16,21,31,28
chr1	15442028	.	T	C	446.07	PASS	AC=1;AF=0.689;AN=2;DP=1967;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,53:78:99:1562,0,478:12,13,23,30
chr1	15442058	.	T	C	494.31	PASS	AC=1;AF=0.548;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,50:78:99:1518,0,646:14,14,23,27
chr1	15442795	.	T	C	768.24	PASS	AC=1;AF=0.563;AN=2;DP=2208;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,54:94:99:1423,0,1135:18,22,24,30
chr1	15443368	.	A	G	1092.57	PASS	AC=2;AF=0.955;AN=2;DP=3302;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3060,292,0:0,0,53,45
chr1	15443476	.	C	G	1069.73	PASS	AC=1;AF=0.548;AN=2;DP=2283;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,45:101:99:1246,0,1677:31,25,19,26
chr1	15443770	.	A	G	613.59	PASS	AC=2;AF=0.955;AN=2;DP=3504;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3463,335,0:0,0,55,57
chr1	15443859	.	T	C	608.99	PASS	AC=1;AF=0.662;AN=2;DP=2542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1267,0,1242:23,26,23,30
chr1	15443898	.	G	A	851.01	PASS	AC=1;AF=0.55;AN=2;DP=2378;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,47:91:99:1075,0,1055:21,23,22,25
chr1	15444288	.	C	T	735.99	PASS	AC=1;AF=0.662;AN=2;DP=2332;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1099,0,1120:26,23,25,18
chr1	15444487	.	G	A	338.02	PASS	AC=1;AF=0.662;AN=2;DP=1381;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:544,0,746:13,16,6,16
chr1	15444563	.	T	C	201.9	PASS	AC=1;AF=0.676;AN=2;DP=724;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:290,0,540:7,11,6,7
chr1	15444643	.	A	G	87.74	PASS	AC=1;AF=0.683;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:156,0,185:2,3,4,2
chr1	15479261	.	GGGC	G	647.55	PASS	AC=2;AF=0.621;AN=2;DP=968;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1330,90,0:0,0,14,16
chr1	15479265	.	G	GAA	647.55	PASS	AC=2;AF=0.621;AN=2;DP=945;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1330,90,0:0,0,14,16
chr1	15479283	.	G	A	422.34	PASS	AC=2;AF=0.869;AN=2;DP=1109;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:884,81,0:0,0,12,15
chr1	15480286	.	G	C	1140.39	PASS	AC=2;AF=0.869;AN=2;DP=6490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,223:225:99:6541,624,0:1,1,120,103
chr1	15480405	.	T	C	319.5	PASS	AC=2;AF=0.989;AN=2;DP=2903;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2400,209,0:0,0,17,53
chr1	15480493	.	G	T	79.67	PASS	AC=2;AF=0.869;AN=2;DP=676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:863,60,0:0,0,5,15
chr1	15480494	.	C	A	79.67	PASS	AC=2;AF=0.869;AN=2;DP=665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:863,60,0:0,0,5,15
chr1	15490865	.	T	A	1124.93	PASS	AC=1;AF=0.529;AN=2;DP=1439;MQ=60;set=variant-variant3-variant6-variant9-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant28-variant31-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,54:107:99:1417,0,1118:28,25,34,20
chr1	15497727	.	T	C	1650.65	PASS	AC=2;AF=0.989;AN=2;DP=7102;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:5791,617,0:0,0,110,96
chr1	15497844	.	T	A	1392.81	PASS	AC=2;AF=0.888;AN=2;DP=5227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4694,446,0:0,0,62,88
chr1	15497954	.	A	G	346.81	PASS	AC=2;AF=0.897;AN=2;DP=987;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1234,105,0:0,0,9,26
chr1	15541398	.	C	T	1017.02	PASS	AC=1;AF=0.618;AN=2;DP=906;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant20-variant26-variant27-variant29-variant30-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:1135,0,869:15,8,16,12
chr1	15541399	.	A	G	1017.02	PASS	AC=1;AF=0.618;AN=2;DP=919;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant20-variant26-variant27-variant29-variant30-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:1135,0,869:15,8,17,13
chr1	15541407	.	C	T	560.27	PASS	AC=1;AF=0.646;AN=2;DP=1376;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:560,0,1457:20,15,16,10
chr1	15541412	.	G	A	704.63	PASS	AC=1;AF=0.618;AN=2;DP=1035;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant20-variant26-variant27-variant29-variant30-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1016,0,1043:18,11,23,19
chr1	15541537	.	C	T	2883.29	PASS	AC=2;AF=0.955;AN=2;DP=4942;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4452,412,0:0,0,84,54
chr1	15541607	.	T	C	1830.87	PASS	AC=1;AF=0.618;AN=2;DP=2719;MQ=60;set=variant2-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant20-variant26-variant27-variant29-variant30-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,106:203:99:2733,0,2306:57,40,60,46
chr1	15545567	.	ACCTGT	A	187.67	PASS	AC=1;AF=0.643;AN=2;DP=164;MQ=60;set=variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant20-variant26-variant27-variant29-variant30-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:228,0,519:7,1,5,1
chr1	15546761	.	G	A	474.44	PASS	AC=1;AF=0.643;AN=2;DP=1494;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:894,0,766:15,12,18,17
chr1	15546825	.	A	G	650.37	PASS	AC=2;AF=0.75;AN=2;DP=2191;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,71:72:99:2366,205,0:0,1,44,27
chr1	15546872	.	CAAA	CA,CAA,C	1341.68	PASS	AC=0,1,0;AF=0.341,0.466,0.011;AN=2;DP=3897;set=Intersection	GT:DP:GQ:SB	0/2:77:8:5,6,46,20
chr1	15573689	.	A	G	198.47	PASS	AC=1;AF=0.652;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant27-variant30-variant34-variant35-variant36-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:145,0,192:4,4,3,2
chr1	15573711	.	C	A	256.63	PASS	AC=1;AF=0.63;AN=2;DP=363;MQ=60;set=variant-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:231,0,230:4,4,5,3
chr1	15573758	.	G	A	323.62	PASS	AC=1;AF=0.621;AN=2;DP=593;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:420,0,288:6,6,10,4
chr1	15573769	.	G	A	501.51	PASS	AC=1;AF=0.621;AN=2;DP=670;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:692,0,558:6,7,13,4
chr1	15573775	.	A	G	498.51	PASS	AC=1;AF=0.683;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:711,0,593:7,7,14,5
chr1	15573950	.	A	C	651.37	PASS	AC=1;AF=0.621;AN=2;DP=1527;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,49:75:99:1207,0,563:15,11,22,27
chr1	15574076	.	C	T	137.09	PASS	AC=1;AF=0.625;AN=2;DP=510;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:237,0,323:4,9,2,8
chr1	15578195	.	T	C	299.56	PASS	AC=1;AF=0.672;AN=2;DP=1032;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:503,0,710:17,10,15,4
chr1	15599025	.	G	A	519.07	PASS	AC=1;AF=0.528;AN=2;DP=440;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant15-variant19-variant22-variant24-variant25-variant27-variant28-variant32-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:468,0,499:3,14,3,13
chr1	15616139	.	G	A	1592.72	PASS	AC=2;AF=0.589;AN=2;DP=5144;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant34-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:5646,582,0:0,0,86,110
chr1	15616183	.	T	C	3686.37	PASS	AC=2;AF=0.625;AN=2;DP=4629;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,142:143:99:4546,418,0:1,0,47,95
chr1	15668276	.	G	A	700.08	PASS	AC=1;AF=0.554;AN=2;DP=1736;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:886,0,700:18,12,22,14
chr1	15668319	.	G	A	427.89	PASS	AC=1;AF=0.5;AN=2;DP=566;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant20-variant29-variant30-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,43:84:99:1029,0,913:24,17,23,20
chr1	15671483	.	G	A	303.2	PASS	AC=1;AF=0.633;AN=2;DP=932;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:466,0,502:12,6,13,6
chr1	15687059	.	A	G	492.92	PASS	AC=2;AF=0.633;AN=2;DP=652;MQ=60;set=variant13-variant15-variant17-variant21-variant23-variant25-variant26-variant32-variant34-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2014,200,0:0,0,43,24
chr1	15701356	.	G	T,C	407.33	PASS	AC=2,0;AF=0.5,0.308;AN=2;DP=393;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:9:26:0,0,1,8
chr1	15701365	.	T	G	90.42	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;set=variant15-variant18-variant34	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:52:119,0,52:0,2,1,3
chr1	15754484	.	T	C	2665.99	PASS	AC=2;AF=0.881;AN=2;DP=3790;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3431,341,0:0,0,62,52
chr1	15767036	.	C	T	1538.23	PASS	AC=1;AF=0.5;AN=2;DP=1130;MQ=60;set=variant7-variant10-variant11-variant15-variant26-variant27-variant33-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:98,49:147:99:1083,0,2387:49,49,25,24
chr1	15769139	.	G	A	734.08	PASS	AC=1;AF=0.5;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant16-variant28-variant32-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,34:64:99:919,0,784:8,22,8,26
chr1	15769876	.	G	GC	1003.81	PASS	AC=2;AF=1;AN=2;DP=2512;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1734,147,0:0,0,25,23
chr1	15770102	.	G	A	1610.5	PASS	AC=1;AF=0.5;AN=2;DP=1357;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant15-variant26-variant27-variant33-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:91,81:172:99:2101,0,2118:42,49,30,51
chr1	15772933	.	A	G	185.87	PASS	AC=1;AF=0.591;AN=2;DP=584;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:336,0,290:8,1,7,3
chr1	15783096	.	GA	G	7299.48	PASS	AC=2;AF=1;AN=2;DP=6442;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,195:197:99:5527,534,0:1,1,107,88
chr1	15783117	.	C	CA	8800.99	PASS	AC=2;AF=1;AN=2;DP=7708;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:9158,743,0:0,0,135,108
chr1	15783222	.	C	T	1911.09	PASS	AC=1;AF=0.5;AN=2;DP=2133;set=variant7-variant10-variant11-variant12-variant13-variant15-variant19-variant26-variant27-variant33-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:112,128:240:99:3107,0,2602:45,67,55,73
chr1	15788269	.	A	C	4645.38	PASS	AC=2;AF=0.841;AN=2;DP=8342;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,252:252:99:7655,756,0:0,0,116,136
chr1	15802468	.	GA	G	1819.4	PASS	AC=1;AF=0.542;AN=2;DP=2016;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant19-variant26-variant27-variant33-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:95,99:194:99:2247,0,2120:57,38,56,43
chr1	15808198	.	C	T	277.61	PASS	AC=1;AF=0.529;AN=2;DP=399;FractionInformativeReads=1;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:733,0,464:0,13,6,17
chr1	15808702	.	C	T	1180.25	PASS	AC=1;AF=0.529;AN=2;DP=1380;MQ=60;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,55:107:99:1660,0,1488:40,12,45,10
chr1	15808767	.	G	A	2976.57	PASS	AC=1;AF=0.529;AN=2;DP=3998;MQ=60;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,129:265:99:2920,0,3367:84,52,73,56
chr1	15808872	.	G	A	3193.08	PASS	AC=1;AF=0.529;AN=2;DP=4849;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,160:314:99:3871,0,3769:66,88,62,98
chr1	15809876	.	G	A	3003.6	PASS	AC=1;AF=0.529;AN=2;DP=4478;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,145:319:99:3455,0,4529:99,75,76,69
chr1	15812432	.	A	G	1228.22	PASS	AC=2;AF=1;AN=2;DP=3887;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3393,315,0:0,0,72,33
chr1	15812665	.	G	T	623.14	PASS	AC=1;AF=0.579;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant17-variant19-variant26-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:992,0,710:1,18,6,25
chr1	15813751	.	C	T	5974.7	PASS	AC=2;AF=1;AN=2;DP=8587;FS=0;MQRankSum=1.31;ReadPosRankSum=0.76;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:8481,783,0:0,0,175,87
chr1	15813969	.	A	C	3785.15	PASS	AC=2;AF=0.758;AN=2;DP=3238;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5557,492,0:0,0,45,119
chr1	15817519	.	AG	A	137.76	PASS	AC=1;AF=0.654;AN=2;DP=163;FS=0;MQ=60;set=variant8-variant10-variant15-variant17-variant19-variant26-variant27-variant33-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:237,0,268:6,4,6,3
chr1	15819768	.	C	A	1160.36	PASS	AC=2;AF=0.758;AN=2;DP=1047;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1293,129,0:0,0,19,24
chr1	15819827	.	T	A	979.93	PASS	AC=1;AF=0.591;AN=2;DP=890;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:554,0,571:11,11,9,13
chr1	15820041	.	C	T	986.3	PASS	AC=1;AF=0.526;AN=2;DP=1290;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:923,0,875:18,17,16,21
chr1	15820307	.	A	AC	660.28	PASS	AC=1;AF=0.591;AN=2;DP=933;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:347,0,610:13,9,7,7
chr1	15820576	.	T	A	632.26	PASS	AC=2;AF=0.758;AN=2;DP=629;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:889,75,0:0,0,6,19
chr1	15820607	.	A	G	457.08	PASS	AC=2;AF=0.742;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,1,10
chr1	15820618	.	A	G	418.54	PASS	AC=2;AF=0.758;AN=2;DP=308;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:444,30,0:0,0,1,9
chr1	15822043	.	T	C	433.29	PASS	AC=1;AF=0.591;AN=2;DP=952;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:890,0,778:6,21,14,23
chr1	15822073	.	A	G	176.64	PASS	AC=1;AF=0.526;AN=2;DP=544;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:633,0,653:7,17,6,15
chr1	15832383	.	G	T	632.26	PASS	AC=2;AF=0.742;AN=2;DP=607;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1066,110,0:0,0,23,14
chr1	15832543	.	T	C	2538	PASS	AC=2;AF=0.742;AN=2;DP=3224;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:3942,419,0:0,0,72,68
chr1	15834297	.	G	A	631.63	PASS	AC=2;AF=0.742;AN=2;DP=858;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1129,116,0:0,0,25,14
chr1	15834360	.	A	G	599.98	PASS	AC=1;AF=0.531;AN=2;DP=908;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant19-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,56:76:99:1472,0,399:13,7,30,26
chr1	15834491	.	G	A	1589.46	PASS	AC=2;AF=0.742;AN=2;DP=1529;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1766,159,0:0,0,18,35
chr1	15844615	.	A	G	2454.62	PASS	AC=2;AF=0.742;AN=2;DP=2329;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2582,252,0:0,0,52,32
chr1	15844926	.	C	T	3375.96	PASS	AC=2;AF=0.742;AN=2;DP=3196;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4342,405,0:0,0,57,78
chr1	15845022	.	C	CTGAG	2249.87	PASS	AC=2;AF=0.742;AN=2;DP=1658;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2944,198,0:0,0,20,46
chr1	15850483	.	G	A	106.77	PASS	AC=2;AF=0.841;AN=2;DP=174;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:223,24,0:0,0,5,3
chr1	15850553	.	C	CGGGGGCG,CGAGGGCG	187.73	PASS	AC=2,0;AF=0.769,0.019;AN=2;DP=295;MQ=60;set=variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:10:42:0,0,4,6
chr1	15850603	.	G	A	148.79	PASS	AC=1;AF=0.591;AN=2;DP=516;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:220,0,308:6,6,5,4
chr1	15850613	.	G	A	725.38	PASS	AC=2;AF=0.742;AN=2;DP=821;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:919,75,0:0,0,14,11
chr1	15850792	.	GC	G	331.63	PASS	AC=1;AF=0.595;AN=2;DP=295;MQ=60;set=variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:69:69,0,224:2,5,0,3
chr1	15850956	.	G	C	331.77	PASS	AC=2;AF=0.78;AN=2;DP=210;FS=0;FractionInformativeReads=1;set=variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	15850973	.	TC	T	313.29	PASS	AC=2;AF=0.762;AN=2;DP=157;FS=0;FractionInformativeReads=1;set=variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant34-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	15851064	.	A	ATCCCCGCACTGACCTCACG	456.23	PASS	AC=2;AF=0.776;AN=2;DP=232;MQ=60;set=variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:38:583,38,0:0,0,1,8
chr1	15853276	.	T	C	960.31	PASS	AC=1;AF=0.526;AN=2;DP=1981;FractionInformativeReads=1;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,54:105:99:1371,0,1252:27,24,30,24
chr1	15853289	.	T	G	2671.28	PASS	AC=2;AF=0.742;AN=2;DP=3467;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3273,323,0:0,0,61,47
chr1	15853551	.	C	T	279.56	PASS	AC=1;AF=0.529;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant21-variant22-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:187,0,195:3,6,3,4
chr1	15860563	.	T	A	273.53	PASS	AC=2;AF=0.788;AN=2;DP=241;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:271,21,0:0,0,6,1
chr1	15860803	.	C	T	1900.21	PASS	AC=1;AF=0.591;AN=2;DP=3587;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,93:184:99:2268,0,2163:40,51,47,46
chr1	15873386	.	A	G	1107.07	PASS	AC=1;AF=0.526;AN=2;DP=1784;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,72:139:99:1678,0,1599:25,42,28,44
chr1	15873410	.	CTTT	CTT,CTTTT,CT,C	70.71	PASS	AC=1,0,1,0;AF=0.243,0.014,0.243,0.027;AN=2;DP=2177;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-variant7-variant8-filterInvariant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-variant35-variant39-filterInvariant40-variant41-filterInvariant42	GT:DP:GQ:SB	3/1:52:99:2,9,7,34
chr1	15874961	.	T	A	1176.39	PASS	AC=1;AF=0.526;AN=2;DP=1898;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,44:110:99:1221,0,1771:21,45,13,31
chr1	15886344	.	A	C	124.7	PASS	AC=1;AF=0.605;AN=2;DP=189;MQ=60;set=variant8-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:215,0,377:2,10,3,5
chr1	15890342	.	CA	C	54.94	PASS	AC=1;AF=0.615;AN=2;DP=172;set=filterInvariant7-variant15-variant16-variant19-variant20-variant21-variant22-variant28-variant29-variant31-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:193,0,216:6,2,7,3
chr1	15890355	.	A	AAAAG,AAAG	671.17	PASS	AC=1,0;AF=0.633,0.033;AN=2;DP=229;MQ=60;set=variant12-variant13-variant15-variant17-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:25:99:10,8,7,0
chr1	15892415	.	A	C	570.15	PASS	AC=1;AF=0.614;AN=2;DP=1359;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,24:67:99:506,0,982:23,20,13,11
chr1	15892980	.	G	A	318.33	PASS	AC=1;AF=0.591;AN=2;DP=781;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:314,0,584:11,13,8,6
chr1	15894959	.	T	C	2398.33	PASS	AC=1;AF=0.526;AN=2;DP=2943;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,73:172:99:1643,0,2486:54,45,37,36
chr1	15896199	.	G	A	36.49	PASS	AC=2;AF=0.679;AN=2;DP=61;FS=0;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant26-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:129,9,0:0,0,0,3
chr1	15896984	.	A	G	222.33	PASS	AC=1;AF=0.591;AN=2;DP=364;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:473,0,394:6,7,6,10
chr1	15897020	.	C	T	263.9	PASS	AC=1;AF=0.526;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:386,0,661:12,9,10,6
chr1	15897508	.	CA	C,CAA	319.56	PASS	AC=0,1;AF=0.274,0.226;AN=2;DP=11925;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-variant44	GT:DP:GQ:SB	0/2:267:99:72,81,50,64
chr1	15899314	.	AT	ATTT,A	69.36	PASS	AC=0,1;AF=0.026,0.553;AN=2;DP=284;set=variant3-variant4-variant5-variant8-variant10-variant11-filterInvariant14-variant15-variant19-variant22-variant23-variant25-variant29-variant31-variant32-variant33-variant39-variant40-variant42	GT:DP:GQ:SB	0/2:10:24:1,2,3,4
chr1	15899752	.	C	CA	170.68	PASS	AC=1;AF=0.531;AN=2;DP=350;MQ=60;set=variant8-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:226,0,248:11,1,9,2
chr1	15901121	.	C	T	509.9	PASS	AC=1;AF=0.591;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:351,0,491:13,1,9,3
chr1	15904318	.	C	T	1441.51	PASS	AC=1;AF=0.591;AN=2;DP=2641;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,66:152:99:1557,0,2236:34,52,23,43
chr1	15905501	.	G	A	1636.08	PASS	AC=1;AF=0.531;AN=2;DP=2553;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant19-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,103:185:99:2508,0,2131:27,55,40,63
chr1	15906696	.	CTT	CT,CTTT,CTTTT,C,CTTTTT	100.33	PASS	AC=0,0,1,0,0;AF=0.167,0.104,0.125,0.104,0.021;AN=2;DP=1188;set=filterInvariant3-variant5-filterInvariant7-filterInvariant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant21-variant24-filterInvariant27-variant28-variant32-variant34-variant35-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant43	GT:DP:GQ:SB	0/3:30:99:2,17,4,7
chr1	15909441	.	C	T	197.99	PASS	AC=2;AF=0.875;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant16-variant19-variant21-variant22-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:328,27,0:0,0,7,2
chr1	15909480	.	G	C	189.45	PASS	AC=1;AF=0.577;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19-variant20-variant21-variant28-variant31-variant32-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:220,0,229:6,4,5,2
chr1	15909547	.	G	A	772.7	PASS	AC=2;AF=0.767;AN=2;DP=603;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1200,87,0:0,0,24,5
chr1	15909624	.	TGAGTACAG	T	2482.96	PASS	AC=2;AF=0.758;AN=2;DP=1631;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2962,199,0:0,0,42,24
chr1	15909744	.	C	T	1274.89	PASS	AC=1;AF=0.614;AN=2;DP=2298;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,61:126:99:1452,0,1650:28,37,29,32
chr1	15909850	.	C	G	2429.36	PASS	AC=2;AF=0.758;AN=2;DP=2727;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2770,249,0:0,0,31,52
chr1	15909895	.	A	G	1315.96	PASS	AC=2;AF=0.758;AN=2;DP=1626;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1492,140,0:0,0,16,31
chr1	15911010	.	T	G	1997.24	PASS	AC=2;AF=0.758;AN=2;DP=1750;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2089,189,0:0,0,44,19
chr1	15911031	.	T	G	2264.77	PASS	AC=2;AF=0.758;AN=2;DP=2143;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3097,273,0:0,0,64,27
chr1	15911131	.	G	A	1453.47	PASS	AC=1;AF=0.614;AN=2;DP=3474;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,110:201:99:2434,0,2293:48,43,60,50
chr1	15911349	.	G	A	884.93	PASS	AC=1;AF=0.526;AN=2;DP=1431;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,55:107:99:1311,0,1450:18,34,20,35
chr1	15911493	.	A	G	1948.36	PASS	AC=2;AF=0.758;AN=2;DP=1783;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2062,179,0:0,0,37,23
chr1	15911597	.	A	G	3182.06	PASS	AC=2;AF=0.758;AN=2;DP=2912;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4061,413,0:0,0,73,65
chr1	15911622	.	A	AG	3795.08	PASS	AC=2;AF=0.758;AN=2;DP=3011;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5744,484,0:0,0,78,83
chr1	15911730	.	T	G	611.85	PASS	AC=1;AF=0.526;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:592,0,772:9,19,5,17
chr1	15944384	.	G	A	1024.74	PASS	AC=1;AF=0.611;AN=2;DP=2211;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,72:154:99:1698,0,2048:35,47,28,44
chr1	15956610	.	A	G	380.03	PASS	AC=1;AF=0.611;AN=2;DP=399;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:416,0,638:16,6,11,4
chr1	15956769	.	G	T	1383.1	PASS	AC=1;AF=0.636;AN=2;DP=2611;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,62:129:99:1357,0,1752:34,33,34,28
chr1	15959886	.	C	G	852.99	PASS	AC=2;AF=0.758;AN=2;DP=1027;MQ=60;set=variant4-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1787,156,0:0,0,37,15
chr1	15959977	.	C	T	595.74	PASS	AC=1;AF=0.636;AN=2;DP=1640;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,64:123:99:1431,0,1406:31,28,32,32
chr1	15965025	.	CTTTT	CTTT,CT,CTT,CTTTTT,CTTTTTT,C	127.25	PASS	AC=0,1,0,0,0,0;AF=0.167,0.083,0.222,0.083,0.028,0.028;AN=2;DP=555;set=variant3-filterInvariant5-variant10-filterInvariant11-variant12-variant14-variant15-filterInvariant18-variant22-variant25-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/2:15:99:1,6,0,8
chr1	15978553	.	CTTTTTTT	CTTTTTT,CTTTTT,CT,CTT,CTTT,CTTTTTTTTT,C	60.25	PASS	AC=0,0,1,0,0,0,0;AF=0.093,0.056,0.222,0.074,0.074,0.037,0.056;AN=2;DP=663;set=variant-variant5-variant6-variant8-variant12-variant13-variant15-variant17-variant19-variant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/3:17:99:3,7,0,7
chr1	15986547	.	T	C	1388.16	PASS	AC=1;AF=0.636;AN=2;DP=3020;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,81:175:99:1878,0,2416:38,56,32,49
chr1	15988702	.	T	C	3405.77	PASS	AC=1;AF=0.636;AN=2;DP=4843;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,143:259:99:3579,0,3181:47,69,76,67
chr1	15988878	.	A	G	1336.54	PASS	AC=1;AF=0.636;AN=2;DP=1844;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,47:103:99:1349,0,1427:21,35,15,32
chr1	15988957	.	G	A	1092.95	PASS	AC=2;AF=0.8;AN=2;DP=1610;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1784,144,0:0,0,20,28
chr1	15989141	.	C	G	728.62	PASS	AC=1;AF=0.63;AN=2;DP=1169;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:1177,0,1088:22,18,22,17
chr1	15989918	.	T	C	2900.74	PASS	AC=1;AF=0.636;AN=2;DP=5799;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:182,142:324:99:3490,0,4580:76,106,55,87
chr1	15990552	.	A	G	187.51	PASS	AC=1;AF=0.636;AN=2;DP=849;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,35:50:99:834,0,285:7,8,17,18
chr1	15990912	.	T	C	995.53	PASS	AC=1;AF=0.636;AN=2;DP=1010;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:552,0,959:25,4,17,3
chr1	15990929	.	CA	C	280.18	PASS	AC=1;AF=0.5;AN=2;DP=3953;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,30:87:99:349,0,954:41,16,24,6
chr1	15990983	.	T	G	2663.97	PASS	AC=1;AF=0.63;AN=2;DP=4747;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,108:248:99:2386,0,3633:85,55,65,43
chr1	15992469	.	AG	A	1435.18	PASS	AC=1;AF=0.594;AN=2;DP=1357;MQ=60;set=variant8-variant10-variant15-variant19-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:2035,0,1984:30,28,36,23
chr1	15993208	.	G	C	1360.57	PASS	AC=1;AF=0.643;AN=2;DP=3049;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,83:200:99:2077,0,3122:49,68,35,48
chr1	15993338	.	A	G	714.13	PASS	AC=2;AF=0.729;AN=2;DP=2199;MQ=60;set=variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2342,195,0:0,0,18,47
chr1	15993699	.	C	CA,CAA	119.19	PASS	AC=1,0;AF=0.5,0.028;AN=2;DP=429;set=variant4-variant5-variant8-variant14-variant15-variant16-variant20-variant22-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37	GT:DP:GQ:SB	0/1:23:99:7,2,8,6
chr1	15993713	.	A	AT,ATT	306.08	PASS	AC=1,0;AF=0.625,0.025;AN=2;DP=757;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:38:99:14,10,11,3
chr1	15994871	.	A	G	4402.85	PASS	AC=1;AF=0.5;AN=2;DP=368;FS=2.205;FractionInformativeReads=1;MQ=60;MQRankSum=0.083;QD=11.96;ReadPosRankSum=-2.119;SOR=0.816;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:189,179:368:99:4431,0,4669:90,99,80,99
chr1	16011005	.	GGGC	GGGCGGC,G	1973.66	PASS	AC=2,0;AF=0.714,0.014;AN=2;DP=3203;set=variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:88:99:0,0,57,31
chr1	16011192	.	G	GGCGACCCTGCTGCCGCAGGGACTC	1251.71	PASS	AC=1;AF=0.643;AN=2;DP=1840;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,53:103:99:1873,0,9645:16,34,17,36
chr1	16042724	.	TC	T	391.02	PASS	AC=1;AF=0.583;AN=2;DP=2090;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,40:117:99:704,0,2520:40,37,19,21
chr1	16042766	.	T	C	874.28	PASS	AC=1;AF=0.643;AN=2;DP=2503;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1243,0,1818:27,41,21,30
chr1	16043157	.	G	A	1082.84	PASS	AC=1;AF=0.611;AN=2;DP=1304;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:916,0,995:24,16,23,13
chr1	16044401	.	G	A	898.55	PASS	AC=1;AF=0.611;AN=2;DP=1161;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1059,0,869:22,13,28,15
chr1	16044807	.	C	G	411.6	PASS	AC=1;AF=0.611;AN=2;DP=525;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:700,0,488:10,4,15,5
chr1	16044929	.	A	G	1378.97	PASS	AC=1;AF=0.611;AN=2;DP=2447;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,87:189:99:2036,0,2480:59,43,44,43
chr1	16044945	.	G	A	1451.1	PASS	AC=1;AF=0.643;AN=2;DP=3106;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,95:206:99:2197,0,2657:65,46,46,49
chr1	16047726	.	T	C	403.84	PASS	AC=1;AF=0.643;AN=2;DP=783;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:695,0,570:15,7,17,8
chr1	16048005	.	A	G	184.4	PASS	AC=1;AF=0.643;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:115,0,153:2,3,3,3
chr1	16048038	.	T	C	164.93	PASS	AC=1;AF=0.65;AN=2;DP=204;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:71:120,0,71:1,2,2,3
chr1	16051584	.	C	T	731.65	PASS	AC=2;AF=0.989;AN=2;DP=859;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.615;ReadPosRankSum=1.418;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:582,63,0:0,0,12,9
chr1	16065303	.	ACACACT	A	553.84	PASS	AC=2;AF=0.63;AN=2;DP=647;set=variant4-variant5-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:58:831,58,0:0,0,4,15
chr1	16067710	.	C	T	2550.93	PASS	AC=1;AF=0.5;AN=2;DP=595;MQ=60;set=variant15-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:110,107:217:99:2579,0,2651:58,52,52,55
chr1	16095316	.	C	T	31.67	PASS	AC=2;AF=0.737;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:513,45,0:0,0,4,11
chr1	16096934	.	C	T	863.91	PASS	AC=2;AF=0.731;AN=2;DP=2257;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,70:71:99:1945,200,0:1,0,42,28
chr1	16097237	.	G	A	144.7	PASS	AC=2;AF=0.798;AN=2;DP=1558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1979,177,0:0,0,21,38
chr1	16112795	.	A	G	2442.09	PASS	AC=2;AF=0.671;AN=2;DP=3612;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3305,308,0:0,0,40,63
chr1	16259434	.	C	T	1567.32	PASS	AC=1;AF=0.5;AN=2;DP=161;FS=3.656;FractionInformativeReads=1;MQ=60;MQRankSum=-0.097;QD=9.73;ReadPosRankSum=-1.282;SOR=0.634;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:90,71:161:99:1596,0,2114:49,41,34,37
chr1	16265060	.	CTTT	CTT,CT,C	252.48	PASS	AC=0,1,0;AF=0.268,0.232,0.054;AN=2;DP=501;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant15-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:16:11:2,0,10,4
chr1	16333569	.	T	G	2299.25	PASS	AC=2;AF=0.932;AN=2;DP=3675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2849,279,0:0,0,39,54
chr1	16333743	.	CA	C	170.9	PASS	AC=1;AF=0.529;AN=2;DP=737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-filterInvariant19-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-variant38-variant39-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:71:71,0,94:3,2,3,1
chr1	16340460	.	G	T	302.94	PASS	AC=2;AF=0.731;AN=2;DP=1084;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:804,69,0:0,0,16,7
chr1	16340761	.	T	C	768.32	PASS	AC=2;AF=0.731;AN=2;DP=3502;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3416,330,0:0,0,51,59
chr1	16340843	.	TC	T	1176.42	PASS	AC=2;AF=0.775;AN=2;DP=2123;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1774,171,0:0,0,25,32
chr1	16340879	.	T	G	1175.45	PASS	AC=2;AF=0.763;AN=2;DP=1823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1591,141,0:0,0,20,27
chr1	16340951	.	A	T	866.65	PASS	AC=2;AF=0.775;AN=2;DP=1652;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1708,153,0:0,0,27,24
chr1	16341354	.	T	G	1328.31	PASS	AC=2;AF=0.731;AN=2;DP=3617;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3581,338,0:0,0,59,54
chr1	16341649	.	C	T,G	545.24	PASS	AC=0,2;AF=0.628,0.103;AN=2;DP=2378;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:80:99:0,0,36,44
chr1	16341650	.	C	T	928.69	PASS	AC=2;AF=0.571;AN=2;DP=459;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant19-variant29-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3605,244,0:0,0,37,44
chr1	16341733	.	T	C	894.05	PASS	AC=2;AF=0.731;AN=2;DP=2578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2783,243,0:0,0,38,43
chr1	16342237	.	A	G	765.02	PASS	AC=2;AF=0.731;AN=2;DP=2863;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2862,282,0:0,0,40,54
chr1	16344360	.	A	G	1163.2	PASS	AC=2;AF=0.744;AN=2;DP=5256;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,158:159:99:4693,440,0:1,0,89,69
chr1	16344402	.	G	A	1576	PASS	AC=2;AF=0.731;AN=2;DP=6046;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:5797,577,0:0,0,100,93
chr1	16344494	.	G	A	1814.37	PASS	AC=2;AF=0.731;AN=2;DP=5928;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5322,543,0:0,0,89,93
chr1	16344625	.	C	G	870.46	PASS	AC=2;AF=0.75;AN=2;DP=3392;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3295,329,0:0,0,48,62
chr1	16344664	.	G	A	2930.76	PASS	AC=2;AF=0.697;AN=2;DP=2455;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2886,283,0:0,0,43,52
chr1	16344730	.	T	C	1292.08	PASS	AC=2;AF=0.775;AN=2;DP=2810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2418,225,0:0,0,37,38
chr1	16344858	.	C	T	1104.04	PASS	AC=2;AF=0.737;AN=2;DP=4087;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3107,297,0:0,0,52,47
chr1	16345208	.	G	A	703.75	PASS	AC=2;AF=0.75;AN=2;DP=2444;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2067,224,0:0,0,33,42
chr1	16345393	.	T	C	120.71	PASS	AC=2;AF=0.817;AN=2;DP=233;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:193,21,0:0,0,3,4
chr1	16345619	.	T	C	726.7	PASS	AC=2;AF=0.75;AN=2;DP=2928;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3465,322,0:0,0,73,35
chr1	16346009	.	G	GC	4613.99	PASS	AC=2;AF=0.697;AN=2;DP=4030;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:5001,475,0:0,0,59,99
chr1	16348412	.	T	C	1720.79	PASS	AC=2;AF=0.775;AN=2;DP=1961;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1695,165,0:0,0,30,25
chr1	16350028	.	A	G	236.43	PASS	AC=2;AF=0.792;AN=2;DP=411;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:405,33,0:0,0,8,3
chr1	16350123	.	C	G	223.62	PASS	AC=2;AF=0.75;AN=2;DP=1219;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:936,93,0:0,0,19,12
chr1	16351275	.	A	G	99.4	PASS	AC=2;AF=0.75;AN=2;DP=1297;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1100,102,0:0,0,24,10
chr1	16352937	.	G	A	2036.71	PASS	AC=2;AF=0.708;AN=2;DP=5439;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,191:192:99:5867,559,0:0,1,123,68
chr1	16353400	.	T	C	1909.22	PASS	AC=2;AF=0.763;AN=2;DP=1718;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1833,146,0:0,0,5,44
chr1	16356501	.	G	A	638.79	PASS	AC=2;AF=0.757;AN=2;DP=3167;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2921,296,0:0,0,50,49
chr1	16356583	.	C	T	2827.27	PASS	AC=2;AF=0.697;AN=2;DP=2331;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2310,239,0:0,0,32,48
chr1	16358148	.	T	C	5555.14	PASS	AC=2;AF=0.782;AN=2;DP=8852;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,273:273:99:8519,818,0:0,0,173,100
chr1	16358685	.	C	G	4536.03	PASS	AC=2;AF=0.743;AN=2;DP=6496;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:4769,509,0:0,0,78,92
chr1	16358932	.	T	C	3158.63	PASS	AC=2;AF=0.782;AN=2;DP=7518;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:6268,663,0:0,0,130,91
chr1	16359051	.	C	A	800.37	PASS	AC=2;AF=0.757;AN=2;DP=5333;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:6307,433,0:0,0,56,88
chr1	16359052	.	A	G	2029.15	PASS	AC=2;AF=0.943;AN=2;DP=6206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:6307,433,0:0,0,53,86
chr1	16359106	.	C	T	234.13	PASS	AC=2;AF=0.714;AN=2;DP=2230;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2328,202,0:0,0,18,50
chr1	16359123	.	A	G	480.75	PASS	AC=2;AF=0.782;AN=2;DP=1569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1604,125,0:0,0,7,35
chr1	16360316	.	A	T	393.94	PASS	AC=2;AF=0.75;AN=2;DP=331;FractionInformativeReads=1;set=variant3-variant4-variant5-filterInvariant6-variant7-variant10-variant11-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant19-variant20-variant21-variant24-variant25-variant26-filterInvariant28-variant29-variant32-variant33-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:181,21,0:0,0,3,4
chr1	16361875	.	A	G	1669.46	PASS	AC=2;AF=0.943;AN=2;DP=2160;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:758,57,0:0,0,17,2
chr1	16361916	.	G	A	2068.07	PASS	AC=2;AF=0.733;AN=2;DP=5308;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1561,150,0:0,0,30,20
chr1	16361989	.	C	T	170.64	PASS	AC=1;AF=0.5;AN=2;DP=1276;FractionInformativeReads=1;set=filterInvariant3-variant4-filterInvariant6-filterInvariant10-variant15-filterInvariant19-filterInvariant28-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,25:94:99:759,0,2727:33,36,13,12
chr1	16362005	.	GCCCT	G	51.6	PASS	AC=1;AF=0.5;AN=2;DP=2221;FractionInformativeReads=1;set=filterInvariant2-filterInvariant3-variant4-filterInvariant6-variant7-filterInvariant10-variant13-variant15-filterInvariant19-filterInvariant25-filterInvariant28-filterInvariant32-variant35-filterInvariant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,23:93:99:715,0,2804:30,40,12,11
chr1	16362109	.	ACT	A	445.85	PASS	AC=2;AF=0.674;AN=2;DP=1424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:430,30,0:0,0,3,7
chr1	16362119	.	T	C	454.57	PASS	AC=2;AF=0.674;AN=2;DP=1076;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,2,7
chr1	16362125	.	G	C	454.57	PASS	AC=2;AF=0.683;AN=2;DP=887;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:27:405,27,0:0,0,2,6
chr1	16362128	.	C	T	370.63	PASS	AC=2;AF=0.688;AN=2;DP=802;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,2,6
chr1	16362561	.	C	G	1341.54	PASS	AC=2;AF=0.797;AN=2;DP=4961;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4586,399,0:0,0,99,34
chr1	16362621	.	G	A	3061.94	PASS	AC=2;AF=1;AN=2;DP=14271;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,335:335:99:10147,1001,0:0,0,197,138
chr1	16362661	.	A	C	4046.59	PASS	AC=2;AF=0.743;AN=2;DP=14418;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,460:460:99:13584,1374,0:0,0,251,209
chr1	16366167	.	G	A	3246.48	PASS	AC=2;AF=0.771;AN=2;DP=4221;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4328,431,0:0,0,60,84
chr1	16366213	.	T	C	3332.5	PASS	AC=2;AF=0.703;AN=2;DP=2462;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,79:80:99:2579,212,0:0,1,27,52
chr1	16366234	.	T	G	1753.55	PASS	AC=2;AF=0.93;AN=2;DP=2241;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2078,150,0:0,0,9,41
chr1	16370178	.	A	AGCTCT	430.36	PASS	AC=2;AF=0.7;AN=2;DP=690;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:90:1350,90,0:0,0,18,10
chr1	16370215	.	A	G	378.94	PASS	AC=2;AF=0.708;AN=2;DP=1152;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1302,129,0:0,0,25,18
chr1	16370427	.	CGGGGG	C	577.38	PASS	AC=2;AF=0.839;AN=2;DP=354;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:245,18,0:0,0,1,5
chr1	16370873	.	C	CACACAT,CACACACACAT,CACACACACACACAT,CACACACAT,CACACACACACAT	1073.12	PASS	AC=0,2,0,0,0;AF=0.028,0.472,0.278,0.069,0.028;AN=2;DP=1020;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:33:99:0,0,27,6
chr1	16370899	.	G	A	453.98	PASS	AC=2;AF=0.833;AN=2;DP=1922;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1723,169,0:0,0,40,17
chr1	16371067	.	G	T	4980.28	PASS	AC=2;AF=0.846;AN=2;DP=7699;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6142,615,0:0,0,99,107
chr1	16371872	.	C	G	789.58	PASS	AC=2;AF=0.846;AN=2;DP=1424;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1298,117,0:0,0,23,16
chr1	16371932	.	A	C	1014.81	PASS	AC=2;AF=0.943;AN=2;DP=2491;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2009,177,0:0,0,40,19
chr1	16372003	.	G	C	2609.65	PASS	AC=2;AF=0.846;AN=2;DP=3315;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3299,291,0:0,0,64,33
chr1	16372283	.	T	G	894.74	PASS	AC=2;AF=0.808;AN=2;DP=1315;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,65:68:99:1833,117,0:1,2,27,38
chr1	16372291	.	G	A	974.57	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant34	GT:AD:DP:GQ:PL:SB	0/1:26,39:65:99:1003,0,541:10,16,9,30
chr1	16373124	.	A	G	701.47	PASS	AC=2;AF=0.902;AN=2;DP=3690;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3138,304,0:0,0,59,43
chr1	16373199	.	CCTT	C	1267.73	PASS	AC=2;AF=0.89;AN=2;DP=3963;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:4432,298,0:0,0,43,56
chr1	16373282	.	A	G	328.54	PASS	AC=2;AF=0.902;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1550,126,0:0,0,8,34
chr1	16374533	.	G	C	2076.84	PASS	AC=2;AF=0.955;AN=2;DP=4444;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3554,347,0:0,0,60,56
chr1	16374622	.	C	G	1999.53	PASS	AC=2;AF=0.902;AN=2;DP=3682;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:4047,365,0:0,0,61,61
chr1	16374656	.	A	G	1977.19	PASS	AC=2;AF=0.902;AN=2;DP=3777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4721,399,0:0,0,74,59
chr1	16374994	.	C	T	5605.65	PASS	AC=2;AF=0.902;AN=2;DP=8652;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,227:227:99:7331,679,0:0,0,112,115
chr1	16375063	.	C	G	7741.67	PASS	AC=2;AF=0.932;AN=2;DP=9680;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:10988,746,0:0,0,115,133
chr1	16375064	.	A	C	7741.67	PASS	AC=2;AF=0.932;AN=2;DP=9653;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:10988,746,0:0,0,114,132
chr1	16375210	.	G	A	1759.66	PASS	AC=2;AF=0.683;AN=2;DP=1635;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2077,180,0:0,0,26,34
chr1	16375354	.	C	T	3111.93	PASS	AC=2;AF=0.902;AN=2;DP=5174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4596,446,0:0,0,84,65
chr1	16375838	.	C	G	6164.42	PASS	AC=2;AF=0.902;AN=2;DP=6590;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5528,517,0:0,0,66,107
chr1	16376191	.	C	T	704.28	PASS	AC=2;AF=0.943;AN=2;DP=1774;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1687,152,0:0,0,36,15
chr1	16376230	.	A	AT	1795.83	PASS	AC=2;AF=0.943;AN=2;DP=3322;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3829,259,0:0,0,53,31
chr1	16376232	.	A	T	1804.87	PASS	AC=2;AF=0.943;AN=2;DP=3426;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3829,259,0:0,0,53,33
chr1	16376238	.	TC	T	1275.67	PASS	AC=2;AF=0.943;AN=2;DP=3627;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2968,283,0:0,0,57,37
chr1	16376278	.	G	A	1926.88	PASS	AC=2;AF=0.943;AN=2;DP=5536;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4113,410,0:0,0,81,56
chr1	16376319	.	T	C	2131.62	PASS	AC=2;AF=0.943;AN=2;DP=6503;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:4891,503,0:0,0,87,81
chr1	16376458	.	T	C,A	557.19	PASS	AC=2,0;AF=0.932,0.011;AN=2;DP=1786;set=Intersection	GT:DP:GQ:SB	1/1:64:99:0,0,19,45
chr1	16378047	.	G	T	1890.46	PASS	AC=1;AF=0.5;AN=2;DP=420;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant34	GT:AD:DP:GQ:PL:SB	0/1:89,82:171:99:1919,0,2300:37,52,39,43
chr1	16379008	.	C	T	766.28	PASS	AC=2;AF=0.884;AN=2;DP=1916;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1915,161,0:0,0,12,42
chr1	16380196	.	T	C	6397.1	PASS	AC=2;AF=1;AN=2;DP=13541;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,411:411:99:12308,1232,0:0,0,169,242
chr1	16380243	.	A	G	1336.4	PASS	AC=2;AF=0.725;AN=2;DP=6920;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,205:208:99:8802,498,0:2,1,53,152
chr1	16380252	.	C	T	1300.33	PASS	AC=2;AF=0.713;AN=2;DP=6011;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,185:187:99:8386,493,0:1,1,42,143
chr1	16381718	.	T	C	2390.06	PASS	AC=1;AF=0.895;AN=2;DP=2036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,24:68:99:914,0,1882:35,9,16,8
chr1	16381722	.	C	T	770.77	PASS	AC=1;AF=0.661;AN=2;DP=1576;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,29:76:99:1013,0,1934:37,10,19,10
chr1	16381792	.	T	A	1861.34	PASS	AC=1;AF=0.661;AN=2;DP=4677;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,74:174:99:1740,0,2623:62,38,46,28
chr1	16381816	.	C	T	2192.33	PASS	AC=1;AF=0.661;AN=2;DP=6093;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,102:227:99:2496,0,3262:72,53,63,39
chr1	16382086	.	C	T	728.64	PASS	AC=1;AF=0.661;AN=2;DP=2481;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,43:100:99:1076,0,1549:36,21,27,16
chr1	16382730	.	C	T	144.4	PASS	AC=1;AF=0.661;AN=2;DP=1158;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:688,0,1065:26,3,18,1
chr1	16382791	.	G	C	647.07	PASS	AC=1;AF=0.661;AN=2;DP=3556;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,62:125:99:1745,0,1736:45,18,47,15
chr1	16382827	.	CTCT	C	1935.16	PASS	AC=1;AF=0.645;AN=2;DP=6422;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,116:247:99:4587,0,5406:79,52,75,41
chr1	16382831	.	T	A	1987.77	PASS	AC=1;AF=0.645;AN=2;DP=6474;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,117:251:99:4613,0,5423:80,54,75,42
chr1	16382834	.	T	A	1987.9	PASS	AC=1;AF=0.645;AN=2;DP=6702;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,123:261:99:4632,0,5453:82,56,76,47
chr1	16382877	.	A	G	4583.7	PASS	AC=1;AF=0.907;AN=2;DP=13277;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,154:319:99:3543,0,3810:78,87,74,80
chr1	16383329	.	T	TC,TCC	277.71	PASS	AC=1,0;AF=0.837,0.023;AN=2;DP=1504;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:40:99:6,22,0,12
chr1	16383336	.	G	C	286.77	PASS	AC=1;AF=0.884;AN=2;DP=1423;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:433,0,1457:6,22,0,13
chr1	16383448	.	A	C	1435.23	PASS	AC=2;AF=1;AN=2;DP=1518;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1036,102,0:0,0,15,19
chr1	16383581	.	G	T	286.61	PASS	AC=1;AF=0.573;AN=2;DP=680;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:178,0,601:10,4,4,2
chr1	16383605	.	A	G	408.7	PASS	AC=1;AF=0.547;AN=2;DP=1076;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,10:36:99:272,0,1018:22,4,9,1
chr1	16383668	.	T	G	1571.04	PASS	AC=2;AF=1;AN=2;DP=3569;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4675,394,0:0,0,85,45
chr1	16383682	.	G	C	1616.54	PASS	AC=1;AF=0.5;AN=2;DP=3735;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,64:153:99:1499,0,2241:54,35,43,21
chr1	16383742	.	C	G	1372.49	PASS	AC=1;AF=0.602;AN=2;DP=6411;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:102,127:229:99:2926,0,2283:55,47,67,60
chr1	16383914	.	C	T	152.62	PASS	AC=1;AF=0.5;AN=2;DP=1320;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,24:68:99:472,0,1103:16,28,9,15
chr1	16384986	.	G	T	367.58	PASS	AC=1;AF=0.5;AN=2;DP=527;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:306,0,699:8,1,6,2
chr1	16384998	.	G	C	343.5	PASS	AC=1;AF=0.5;AN=2;DP=652;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:372,0,1036:13,3,8,2
chr1	16384999	.	G	A	343.5	PASS	AC=1;AF=0.5;AN=2;DP=670;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:372,0,1036:13,3,8,2
chr1	16385042	.	G	A	588.54	PASS	AC=1;AF=0.5;AN=2;DP=1396;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:781,0,859:23,5,25,2
chr1	16385131	.	C	A	1322.32	PASS	AC=1;AF=0.5;AN=2;DP=1670;set=variant2-variant4-variant9-variant12-variant15-variant17-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,78:185:99:1431,0,2321:62,45,48,30
chr1	16385175	.	G	A	559.45	PASS	AC=1;AF=0.634;AN=2;DP=5903;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,140:263:99:5095,0,2847:70,53,73,67
chr1	16385184	.	G	A	3243.55	PASS	AC=1;AF=0.5;AN=2;DP=4925;set=variant3-filterInvariant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:151,121:272:99:2678,0,5543:81,70,65,56
chr1	16385248	.	C	T	833.72	PASS	AC=1;AF=0.643;AN=2;DP=3161;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,112:240:99:4347,0,4873:56,72,52,60
chr1	16385250	.	A	G	833.72	PASS	AC=1;AF=0.778;AN=2;DP=3003;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,113:234:99:4347,0,4873:53,68,52,61
chr1	16385323	.	A	G	855.92	PASS	AC=1;AF=0.872;AN=2;DP=1584;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,49:101:99:1835,0,1849:15,37,15,34
chr1	16385330	.	G	T	806.49	PASS	AC=1;AF=0.875;AN=2;DP=1479;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,47:89:99:1839,0,1652:9,33,13,34
chr1	16385797	.	C	G	1706	PASS	AC=1;AF=0.64;AN=2;DP=4784;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,43:122:99:1011,0,2090:53,26,31,12
chr1	16385980	.	G	A	6015.28	PASS	AC=1;AF=0.884;AN=2;DP=8526;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,122:239:99:2848,0,3045:36,81,41,81
chr1	16386008	.	T	C	4832.98	PASS	AC=1;AF=0.884;AN=2;DP=6486;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,95:177:99:2471,0,2260:16,66,31,64
chr1	16386247	.	T	C	211.41	PASS	AC=2;AF=1;AN=2;DP=403;FS=0;MQRankSum=0.747;ReadPosRankSum=-0.747;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:576,45,0:0,0,13,2
chr1	16386305	.	G	GC	889.27	PASS	AC=1;AF=0.628;AN=2;DP=1798;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,14:53:99:313,0,1071:29,10,9,5
chr1	16386416	.	G	A	1729.31	PASS	AC=1;AF=0.884;AN=2;DP=4231;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,47:119:99:885,0,1805:35,37,20,27
chr1	16386447	.	G	C	1640.1	PASS	AC=2;AF=1;AN=2;DP=3766;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3072,312,0:0,0,42,62
chr1	16386495	.	C	T	509.16	PASS	AC=1;AF=0.645;AN=2;DP=1679;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,26:69:99:569,0,1158:13,30,9,17
chr1	16388485	.	T	C	594.88	PASS	AC=1;AF=0.629;AN=2;DP=1359;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:621,0,1055:25,10,19,4
chr1	16388556	.	C	T	4302.3	PASS	AC=1;AF=0.814;AN=2;DP=5021;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,64:145:99:2459,0,3446:45,36,40,24
chr1	16388565	.	C	G	2903.27	PASS	AC=1;AF=0.629;AN=2;DP=4159;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,69:153:99:2560,0,3455:45,39,43,26
chr1	16388646	.	T	C	5236.94	PASS	AC=2;AF=0.909;AN=2;DP=7934;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5542,557,0:0,0,86,100
chr1	16388709	.	G	T	1357.72	PASS	AC=2;AF=0.675;AN=2;DP=4999;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3710,375,0:0,0,49,77
chr1	16388756	.	CACCCAT	C	1462.84	PASS	AC=1;AF=0.5;AN=2;DP=807;set=variant2-variant4-variant6-variant9-variant12-variant15-variant17-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:1253,0,975:7,19,5,27
chr1	16388766	.	C	T	1575.79	PASS	AC=2;AF=0.898;AN=2;DP=2429;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,52:54:75:2036,75,0:1,1,11,41
chr1	16388875	.	GCCC	GC,GCC,G	453.86	PASS	AC=1,0,0;AF=0.557,0.057,0.1;AN=2;DP=818;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:17:99:5,2,4,6
chr1	16451413	.	C	T	1710.79	PASS	AC=2;AF=0.989;AN=2;DP=2883;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2429,230,0:0,0,34,43
chr1	16460696	.	G	A	1035.93	PASS	AC=1;AF=0.571;AN=2;DP=255;MQ=60;set=variant-variant6-variant15-variant20-variant23-variant25-variant35	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:238,0,394:9,6,5,4
chr1	16460743	.	TAAC	T	1607.63	PASS	AC=2;AF=0.989;AN=2;DP=1850;MQ=60;MQRankSum=2.379;ReadPosRankSum=1.256;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1932,130,0:0,0,29,14
chr1	16482665	.	G	A	474.59	PASS	AC=1;AF=0.5;AN=2;DP=90;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:503,0,767:9,19,8,13
chr1	16528218	.	G	T	200.3	PASS	AC=2;AF=0.65;AN=2;DP=1255;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1927,157,0:0,0,29,24
chr1	16528469	.	GCC	G	277.24	PASS	AC=2;AF=0.775;AN=2;DP=1405;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1611,115,0:0,0,14,24
chr1	16528472	.	TACCCTAGGGACC	T	277.05	PASS	AC=2;AF=0.775;AN=2;DP=1356;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1610,114,0:0,0,14,24
chr1	16528843	.	A	G	1646.85	PASS	AC=2;AF=0.722;AN=2;DP=1470;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1883,167,0:0,0,38,18
chr1	16529075	.	G	A	1830.35	PASS	AC=1;AF=0.5;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:90,79:169:99:1859,0,2261:38,52,32,47
chr1	16533022	.	C	T	1234.59	PASS	AC=2;AF=0.78;AN=2;DP=2651;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2241,191,0:0,0,13,51
chr1	16533830	.	AATTC	A	283.9	PASS	AC=2;AF=0.795;AN=2;DP=706;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:58:856,58,0:0,0,12,7
chr1	16535804	.	G	C	46.96	PASS	AC=2;AF=0.78;AN=2;DP=627;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:647,57,0:0,0,5,14
chr1	16543175	.	A	C	2259.04	PASS	AC=2;AF=1;AN=2;DP=4450;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4091,377,0:0,0,42,84
chr1	16555105	.	C	T	316.48	PASS	AC=1;AF=0.58;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:235,0,165:4,1,5,2
chr1	16555882	.	C	T	803.6	PASS	AC=1;AF=0.58;AN=2;DP=622;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:589,0,560:14,1,15,2
chr1	16558838	.	C	A	1151.95	PASS	AC=1;AF=0.613;AN=2;DP=3628;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,73:138:99:1759,0,1608:23,42,31,42
chr1	16559541	.	C	G	2152.72	PASS	AC=1;AF=0.6;AN=2;DP=2374;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,64:104:99:1571,0,1011:11,29,25,39
chr1	16562968	.	C	A	566.73	PASS	AC=2;AF=0.821;AN=2;DP=1013;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1171,93,0:0,0,25,6
chr1	16563635	.	A	G	1113.87	PASS	AC=2;AF=0.821;AN=2;DP=1911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1871,183,0:0,0,28,33
chr1	16574040	.	TC	T	8576.12	PASS	AC=1;AF=0.558;AN=2;DP=5874;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,122:266:99:3681,0,4452:70,74,63,59
chr1	16574316	.	T	C	1715.98	PASS	AC=2;AF=0.821;AN=2;DP=2558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3096,246,0:0,0,15,67
chr1	16574382	.	A	C	619.59	PASS	AC=1;AF=0.574;AN=2;DP=818;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:710,0,453:7,11,6,17
chr1	16575030	.	T	C	485.74	PASS	AC=1;AF=0.558;AN=2;DP=951;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:608,0,566:10,10,13,9
chr1	16576437	.	ACAAT	A	4310.74	PASS	AC=1;AF=0.536;AN=2;DP=1584;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,44:123:99:1611,0,4186:36,43,15,29
chr1	16576836	.	A	G	1458.3	PASS	AC=1;AF=0.574;AN=2;DP=1386;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:589,0,448:9,12,13,11
chr1	16577908	.	G	C	2454.84	PASS	AC=1;AF=0.574;AN=2;DP=3581;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,72:161:99:1855,0,2422:44,45,28,44
chr1	16579070	.	C	T	805.92	PASS	AC=1;AF=0.556;AN=2;DP=620;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:285,0,421:4,11,2,8
chr1	16583030	.	C	CA	1520.66	PASS	AC=1;AF=0.558;AN=2;DP=1143;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:670,0,728:19,11,16,11
chr1	16621183	.	C	T	1496.67	PASS	AC=2;AF=0.821;AN=2;DP=2105;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1866,165,0:0,0,40,15
chr1	16632188	.	G	A	1163.82	PASS	AC=1;AF=0.536;AN=2;DP=726;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:616,0,774:18,12,19,4
chr1	16641899	.	C	T	905.19	PASS	AC=1;AF=0.613;AN=2;DP=3029;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,73:126:99:1909,0,1265:22,31,35,38
chr1	16678893	.	C	A	99.27	PASS	AC=1;AF=0.5;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:41,7:48:99:128,0,2082:19,22,4,3
chr1	16678899	.	G	A	67.21	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=45;FS=7.286;FractionInformativeReads=1;MQ=60;MQRankSum=-0.668;QD=1.49;ReadPosRankSum=-3.521;SOR=1.936;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:40,5:45:95:95,0,2092:18,22,4,1
chr1	16693725	.	T	TG	854.62	PASS	AC=1;AF=0.538;AN=2;DP=867;MQ=60;set=variant2-variant7-variant9-variant15-variant17-variant18-variant25-variant31-variant33-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,20:58:99:461,0,942:15,23,8,12
chr1	16693985	.	TTC	T	222.61	PASS	AC=1;AF=0.545;AN=2;DP=120;MQ=60;set=variant-variant6-variant8-variant11-variant15-variant20-variant23-variant32-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:28:159,0,28:0,1,0,4
chr1	16713555	.	G	C	7023.43	PASS	AC=1;AF=0.536;AN=2;DP=2913;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:156,134:290:99:3181,0,3847:82,74,69,65
chr1	16714095	.	C	T	4253.74	PASS	AC=1;AF=0.536;AN=2;DP=1849;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,69:135:99:1735,0,1676:34,32,36,33
chr1	16722100	.	C	CT	5173.9	PASS	AC=1;AF=0.567;AN=2;DP=3726;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,132:253:99:3021,0,2582:58,63,62,70
chr1	16722934	.	C	G	2386.77	PASS	AC=1;AF=0.536;AN=2;DP=1017;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1204,0,1234:24,22,31,13
chr1	16723139	.	C	A	3627.86	PASS	AC=1;AF=0.536;AN=2;DP=1880;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,88:172:99:2341,0,2286:41,43,41,47
chr1	16723268	.	T	C	3646.68	PASS	AC=1;AF=0.567;AN=2;DP=1868;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,73:146:99:1972,0,1984:33,40,29,44
chr1	16723828	.	C	T	248.3	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.154;QD=8.28;ReadPosRankSum=-1.606;SOR=0.859;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:277,0,476:11,9,6,4
chr1	16725818	.	A	G	604.94	PASS	AC=1;AF=0.536;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:303,0,262:7,3,8,5
chr1	16726036	.	A	G	1425.38	PASS	AC=1;AF=0.536;AN=2;DP=960;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:964,0,1201:23,22,14,22
chr1	16727305	.	G	GCTT	2437.16	PASS	AC=1;AF=0.567;AN=2;DP=1501;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,54:122:99:2116,0,3183:31,37,28,26
chr1	16730413	.	C	T	1350.84	PASS	AC=1;AF=0.538;AN=2;DP=1204;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,53:121:99:1246,0,1820:30,38,21,32
chr1	16731646	.	T	C	5055.85	PASS	AC=2;AF=1;AN=2;DP=4060;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3355,270,0:0,0,33,57
chr1	16731647	.	G	C	5055.85	PASS	AC=1;AF=0.716;AN=2;DP=3311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,37:90:99:778,0,1454:18,35,15,22
chr1	16731661	.	T	C	2819.83	PASS	AC=1;AF=0.716;AN=2;DP=2690;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:692,0,1299:12,32,11,19
chr1	16731756	.	G	T	728.07	PASS	AC=1;AF=0.538;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:180,0,197:2,5,1,5
chr1	16735364	.	CAAAAA	CA,CAA,CAAA,CAAAA,C	127.81	PASS	AC=0,1,0,0,0;AF=0.3,0.1,0.22,0.04,0.08;AN=2;DP=158;FS=0;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant36-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:4:18:1,0,2,1
chr1	16736327	.	G	A	1736.89	PASS	AC=1;AF=0.5;AN=2;DP=1452;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant15-variant19-variant20-variant24-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:125,113:238:99:2811,0,3054:69,56,63,50
chr1	16736546	.	C	T	1070.97	PASS	AC=2;AF=0.73;AN=2;DP=3700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4308,377,0:0,0,39,87
chr1	16748432	.	C	T	2576.91	PASS	AC=1;AF=0.5;AN=2;DP=1947;MQ=60;set=variant-variant8-variant11-variant15-variant19-variant20-variant24-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:123,149:272:99:3432,0,2979:51,72,67,82
chr1	16759325	.	G	A	119.91	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant20-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:502,0,238:7,4,13,7
chr1	16763639	.	G	A	438.03	PASS	AC=1;AF=0.5;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant20-variant27-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:506,0,576:15,7,13,7
chr1	16767359	.	A	G	1384.38	PASS	AC=1;AF=0.5;AN=2;DP=1158;MQ=60;set=variant8-variant11-variant15-variant19-variant20-variant27-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,85:187:99:2099,0,2748:41,61,33,52
chr1	16786087	.	T	C	1315.25	PASS	AC=2;AF=1;AN=2;DP=2379;FS=0;MQ=60;MQRankSum=-0.896;ReadPosRankSum=0.478;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2608,266,0:0,0,48,41
chr1	16802392	.	G	C	515.56	PASS	AC=1;AF=0.5;AN=2;DP=816;MQ=60;set=variant-variant8-variant11-variant15-variant19-variant20-variant27-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,66:118:99:1763,0,1215:28,24,36,30
chr1	16802533	.	G	A	526.76	PASS	AC=1;AF=0.5;AN=2;DP=1022;MQ=60;set=variant-variant8-variant11-variant15-variant19-variant20-variant27-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,76:151:99:1867,0,1733:35,40,31,45
chr1	16809796	.	T	G	817.44	PASS	AC=1;AF=0.5;AN=2;DP=647;set=variant11-variant15-variant19-variant20-variant24-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:53,68:121:99:1577,0,1090:29,24,39,29
chr1	16862282	.	G	A	83.76	PASS	AC=1;AF=0.5;AN=2;DP=1294;FractionInformativeReads=1;set=filterInvariant-filterInvariant7-variant15-variant20-variant21-variant26-variant29-filterInvariant30-variant34-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,21:120:99:332,0,2953:90,9,19,2
chr1	16862454	.	T	G	19431.9	PASS	AC=1;AF=0.5;AN=2;DP=59379;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:912,807:1719:99:30169,0,35089:497,415,454,353
chr1	16862461	.	T	A	19801.3	PASS	AC=1;AF=0.5;AN=2;DP=60743;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:947,818:1765:99:30343,0,35641:511,436,456,362
chr1	16862502	.	A	G	24850.1	PASS	AC=1;AF=0.5;AN=2;DP=67059;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:849,1154:2003:99:29267,0,16725:390,459,582,572
chr1	16862708	.	T	G	2252.72	PASS	AC=1;AF=0.5;AN=2;DP=9082;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:99,106:205:99:4027,0,3944:22,77,8,98
chr1	16862712	.	G	T	2103.78	PASS	AC=1;AF=0.5;AN=2;DP=8023;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:94,96:190:99:3904,0,3927:21,73,5,91
chr1	16862714	.	T	G	2112.33	PASS	AC=1;AF=0.5;AN=2;DP=7572;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:89,93:182:99:3748,0,3836:20,69,5,88
chr1	16862732	.	A	G	185.05	PASS	AC=1;AF=0.5;AN=2;DP=3714;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:72,33:105:99:770,0,3213:16,56,0,33
chr1	16863141	.	C	A	137.44	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;set=variant-variant8-variant15-variant19-variant20-variant27-variant34	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:499,0,439:12,0,13,3
chr1	16863304	.	T	C	1608	PASS	AC=1;AF=0.5;AN=2;DP=12986;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:251,48:299:99:1422,0,10435:128,123,34,14
chr1	16863308	.	G	T	1720.68	PASS	AC=1;AF=0.5;AN=2;DP=13359;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:256,56:312:99:1692,0,10663:130,126,37,19
chr1	16863314	.	A	G	1849.58	PASS	AC=1;AF=0.5;AN=2;DP=14109;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:260,69:329:99:1929,0,10638:131,129,44,25
chr1	16863328	.	T	G	1912.66	PASS	AC=1;AF=0.5;AN=2;DP=14723;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:256,85:341:99:2015,0,6520:125,131,53,32
chr1	16863352	.	C	T	2181.66	PASS	AC=1;AF=0.5;AN=2;DP=14974;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:230,99:329:99:2435,0,5859:106,124,60,39
chr1	16863382	.	A	T	485.63	PASS	AC=1;AF=0.5;AN=2;DP=7685;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant7-variant11-variant12-filterInvariant13-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant26-variant29-filterInvariant30-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,56:272:99:804,0,5382:100,116,34,22
chr1	16863398	.	A	C	2229.72	PASS	AC=1;AF=0.5;AN=2;DP=11865;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,108:239:99:2821,0,3203:54,77,57,51
chr1	16863514	.	C	T	84.93	PASS	AC=1;AF=0.5;AN=2;DP=1116;set=variant2-variant3-variant4-variant7-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant26-filterInvariant28-variant29-filterInvariant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:550,0,801:0,21,0,16
chr1	16890383	.	C	T	133.23	PASS	AC=1;AF=0.5;AN=2;DP=1820;set=filterInvariant-variant8-filterInvariant15-filterInvariant21-filterInvariant27-filterInvariant30	GT:AD:DP:GQ:PL:SB	0/1:375,50:425:99:562,0,11517:265,110,38,12
chr1	16890421	.	G	A	283.53	PASS	AC=1;AF=0.5;AN=2;DP=20908;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:665,78:743:99:267,0,21443:447,218,56,22
chr1	16890428	.	T	A	1340.61	PASS	AC=1;AF=0.5;AN=2;DP=15328;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant11-filterInvariant12-variant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-variant21-variant22-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant31-filterInvariant32-filterInvariant33-filterInvariant35-variant37-filterInvariant38-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:636,161:797:99:3009,0,19193:422,214,110,51
chr1	16890441	.	C	T	656.94	PASS	AC=1;AF=0.5;AN=2;DP=19798;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant30-variant32-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:806,101:907:99:494,0,23932:534,272,65,36
chr1	16890484	.	G	C	378.63	PASS	AC=1;AF=0.5;AN=2;DP=29575;set=filterInvariant-filterInvariant2-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant30-filterInvariant31-variant32-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:1161,147:1308:99:764,0,31922:668,493,91,56
chr1	16890598	.	T	A	13968	PASS	AC=1;AF=0.534;AN=2;DP=55757;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:739,850:1589:99:21012,0,18287:326,413,359,491
chr1	16890639	.	C	T	5891.41	PASS	AC=1;AF=0.5;AN=2;DP=42627;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant38-filterInvariant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:757,481:1238:99:11926,0,25280:323,434,189,292
chr1	16890644	.	C	T	4350.45	PASS	AC=1;AF=0.5;AN=2;DP=43309;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:771,411:1182:99:8773,0,26871:304,467,171,240
chr1	16890671	.	T	C	17120.1	PASS	AC=1;AF=0.545;AN=2;DP=34126;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:247,665:912:99:26650,0,8111:96,151,231,434
chr1	16890672	.	G	A	17120.1	PASS	AC=1;AF=0.545;AN=2;DP=33755;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:243,659:902:99:26650,0,8111:94,149,227,432
chr1	16890756	.	T	A	401.35	PASS	AC=1;AF=0.5;AN=2;DP=879;set=variant-variant8-filterInvariant15-filterInvariant21-filterInvariant30	GT:AD:DP:GQ:PL:SB	0/1:215,28:243:99:295,0,8263:40,175,5,23
chr1	16890760	.	G	A	1328.16	PASS	AC=1;AF=0.511;AN=2;DP=8098;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:150,76:226:99:2374,0,4959:25,125,16,60
chr1	16891158	.	A	C	339.26	PASS	AC=1;AF=0.5;AN=2;DP=3343;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant14-filterInvariant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:109,12:121:99:105,0,3580:81,28,11,1
chr1	16891243	.	C	G	6249.01	PASS	AC=1;AF=0.795;AN=2;DP=12817;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:99,204:303:99:5680,0,1998:52,47,139,65
chr1	16891365	.	G	A	376.03	PASS	AC=1;AF=0.5;AN=2;DP=3472;set=filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant34-variant40-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:454,69:523:99:407,0,12858:192,262,29,40
chr1	16891485	.	C	T	2686.74	PASS	AC=1;AF=0.536;AN=2;DP=11178;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:209,89:298:99:2237,0,5182:101,108,20,69
chr1	16892310	.	T	G	2858.92	PASS	AC=1;AF=0.511;AN=2;DP=11165;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,221:283:99:6305,0,1012:45,17,49,172
chr1	16892407	.	A	G	475.99	PASS	AC=1;AF=0.5;AN=2;DP=6759;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:102,87:189:99:2015,0,2825:61,41,53,34
chr1	16892419	.	A	G	108.43	PASS	AC=1;AF=0.5;AN=2;DP=7050;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant12-variant14-filterInvariant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:161,30:191:99:309,0,5413:98,63,18,12
chr1	16892561	.	C	T	3684.59	PASS	AC=2;AF=1;AN=2;DP=12177;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,297:297:99:11124,897,0:0,0,163,134
chr1	16892578	.	ACT	A	1687.29	PASS	AC=1;AF=0.5;AN=2;DP=12202;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,129:324:99:4766,0,7740:103,92,67,62
chr1	16893033	.	G	A	2496.89	PASS	AC=1;AF=0.705;AN=2;DP=20912;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,309:453:99:8730,0,2851:80,64,178,131
chr1	16893071	.	T	G	106.58	PASS	AC=1;AF=0.5;AN=2;DP=8904;set=filterInvariant-variant7-filterInvariant8-filterInvariant10-filterInvariant12-filterInvariant13-variant15-filterInvariant16-filterInvariant19-filterInvariant24-variant25-filterInvariant26-variant30-filterInvariant31-variant34-variant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:372,124:496:99:2115,0,8976:179,193,59,65
chr1	16893884	.	G	A	4200.18	PASS	AC=1;AF=0.5;AN=2;DP=39214;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:738,385:1123:99:10170,0,21045:182,556,82,303
chr1	16894277	.	G	T	464.12	PASS	AC=1;AF=0.5;AN=2;DP=2088;set=variant-variant3-filterInvariant4-variant6-variant8-variant9-variant10-variant15-variant20-variant21-filterInvariant22-variant24-filterInvariant25-variant27-variant28-variant30-variant31-filterInvariant32-variant34-variant35-filterInvariant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,21:122:99:410,0,3149:86,15,15,6
chr1	16894301	.	G	T	192.81	PASS	AC=1;AF=0.5;AN=2;DP=2267;set=variant-filterInvariant2-variant4-variant5-variant11-variant15-filterInvariant16-filterInvariant18-filterInvariant20-variant21-variant22-filterInvariant25-variant31-filterInvariant33-variant37-filterInvariant38-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:131,45:176:99:881,0,3663:100,31,32,13
chr1	16894323	.	C	A	486.05	PASS	AC=1;AF=0.5;AN=2;DP=6141;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant12-filterInvariant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:193,47:240:99:658,0,5041:135,58,30,17
chr1	16895276	.	G	A	71.14	PASS	AC=1;AF=0.5;AN=2;DP=545;set=variant-variant2-variant3-variant4-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-filterInvariant24-variant26-variant28-variant30-variant34-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:346,0,582:13,7,8,5
chr1	16895392	.	AC	A	127.2	PASS	AC=1;AF=0.5;AN=2;DP=2912;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant7-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-filterInvariant24-variant26-variant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant36-variant37-filterInvariant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,57:119:99:1592,0,1723:42,20,40,17
chr1	16895634	.	T	G	4365.94	PASS	AC=2;AF=0.682;AN=2;DP=12386;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,376:378:99:10776,1083,0:1,1,107,269
chr1	16899864	.	C	T	54.4	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=43.7;MQRankSum=-0.113;QD=3.4;ReadPosRankSum=-0.566;SOR=0.836;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:83:83,0,347:6,5,3,2
chr1	16900842	.	A	G	80.52	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=243;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:68,12:80:95:95,0,1614:50,18,9,3
chr1	16900883	.	T	G	62.88	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4035;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:155,33:188:99:293,0,3513:90,65,21,12
chr1	16901247	.	G	T	41.81	PASS	AC=1;AF=0.5;AN=2;DP=2427;FractionInformativeReads=1;set=filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:85,14:99:77:77,0,2181:14,71,2,12
chr1	16901549	.	A	G	1055.29	PASS	AC=1;AF=0.5;AN=2;DP=4898;set=variant-variant3-variant4-variant6-variant8-variant10-variant12-variant15-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant27-variant28-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:193,49:242:99:834,0,5915:140,53,37,12
chr1	16901668	.	T	C	1062.77	PASS	AC=1;AF=0.5;AN=2;DP=11084;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-filterInvariant27-variant29-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:261,209:470:99:5040,0,5857:117,144,93,116
chr1	16901710	.	C	G	1081.82	PASS	AC=1;AF=0.5;AN=2;DP=6655;set=variant-filterInvariant3-variant6-filterInvariant7-variant8-filterInvariant10-variant13-variant15-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-variant27-filterInvariant28-filterInvariant29-variant30-filterInvariant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:260,96:356:99:1678,0,8701:87,173,37,59
chr1	16901714	.	G	A	3515.06	PASS	AC=1;AF=0.56;AN=2;DP=10585;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,238:335:99:7766,0,1987:31,66,82,156
chr1	16901757	.	C	A	251.99	PASS	AC=1;AF=0.5;AN=2;DP=981;set=variant-variant8-variant15-variant21-variant27-variant30-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:100,24:124:99:454,0,3535:6,94,1,23
chr1	16902715	.	C	T	68.18	PASS	AC=1;AF=0.5;AN=2;DP=403;FractionInformativeReads=1;set=variant-variant8-filterInvariant15-filterInvariant21-filterInvariant30	GT:AD:DP:GQ:PL:SB	0/1:82,18:100:99:237,0,2017:63,19,13,5
chr1	16902823	.	G	C	321.77	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1127;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:247,54:301:99:519,0,5480:125,122,33,21
chr1	16902884	.	T	C	240.51	PASS	AC=1;AF=0.5;AN=2;DP=4946;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant11-filterInvariant12-variant15-filterInvariant16-variant19-variant20-variant21-variant22-variant26-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:161,51:212:99:797,0,4086:67,94,20,31
chr1	16902894	.	A	G	1350.96	PASS	AC=2;AF=0.648;AN=2;DP=8122;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:5795,480,0:0,0,53,93
chr1	16902943	.	T	C	258.93	PASS	AC=1;AF=0.5;AN=2;DP=5626;set=variant-variant5-filterInvariant7-filterInvariant9-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-variant26-filterInvariant29-filterInvariant31-variant33-filterInvariant34-variant36-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:192,47:239:99:692,0,5028:117,75,29,18
chr1	16902982	.	G	T	233.72	PASS	AC=1;AF=0.5;AN=2;DP=1138;set=filterInvariant5-filterInvariant15-filterInvariant20-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:274,49:323:99:382,0,7020:158,116,26,23
chr1	16903663	.	C	T	521.83	PASS	AC=1;AF=0.5;AN=2;DP=2211;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,28:80:99:936,0,1438:34,18,25,3
chr1	16903674	.	C	T	434.01	PASS	AC=1;AF=0.5;AN=2;DP=2747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,18:92:99:625,0,3021:51,23,18,0
chr1	16903683	.	T	A	539.53	PASS	AC=1;AF=0.5;AN=2;DP=3406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,28:111:99:792,0,3286:56,27,24,4
chr1	16903732	.	C	T	544.66	PASS	AC=1;AF=0.5;AN=2;DP=830;FractionInformativeReads=1;set=variant6-variant8-filterInvariant15-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:189,31:220:99:361,0,5488:123,66,22,9
chr1	16903747	.	T	C	256.45	PASS	AC=1;AF=0.5;AN=2;DP=635;set=filterInvariant-variant8-filterInvariant15	GT:AD:DP:GQ:PL:SB	0/1:227,30:257:85:85,0,6486:139,88,18,12
chr1	16903780	.	C	T	314.56	PASS	AC=1;AF=0.5;AN=2;DP=5632;set=filterInvariant4-variant7-variant8-variant11-variant13-filterInvariant15-variant16-variant17-variant18-filterInvariant19-filterInvariant21-filterInvariant23-variant26-variant29-variant33-variant36-variant39-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:258,34:292:99:104,0,6596:136,122,19,15
chr1	16903882	.	T	C	50.28	PASS	AC=1;AF=0.5;AN=2;DP=2759;set=filterInvariant5-filterInvariant9-variant11-filterInvariant13-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant21-variant26-variant29-variant33-filterInvariant36-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,14:130:99:130,0,3621:25,91,2,12
chr1	16903893	.	A	C	226.88	PASS	AC=1;AF=0.5;AN=2;DP=936;set=filterInvariant-filterInvariant11-variant15-filterInvariant21-filterInvariant26-filterInvariant27-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:92,16:108:99:263,0,2828:15,77,1,15
chr1	16903912	.	T	A	1325.53	PASS	AC=2;AF=0.698;AN=2;DP=4925;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant29-variant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2077,162,0:0,0,0,54
chr1	16905641	.	C	T	70.69	PASS	AC=1;AF=0.5;AN=2;DP=733;set=variant2-filterInvariant3-variant4-variant7-filterInvariant9-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant19-filterInvariant24-filterInvariant25-filterInvariant26-variant29-variant33-filterInvariant34-variant39-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,9:60:94:94,0,1342:23,28,4,5
chr1	16905718	.	A	C	62.07	PASS	AC=1;AF=0.5;AN=2;DP=627;FractionInformativeReads=1;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:561,0,569:0,16,0,18
chr1	16905788	.	A	G	79.68	PASS	AC=1;AF=0.5;AN=2;DP=402;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,273:3,4,0,7
chr1	16905789	.	T	C	79.68	PASS	AC=1;AF=0.5;AN=2;DP=393;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,273:3,4,0,7
chr1	16905800	.	G	A	79.68	PASS	AC=1;AF=0.5;AN=2;DP=261;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant20-filterInvariant21-variant22-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,237:3,3,0,5
chr1	16905803	.	G	C	79.68	PASS	AC=1;AF=0.5;AN=2;DP=206;set=variant4-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant20-filterInvariant21-variant22-variant28-variant29-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,237:3,3,0,5
chr1	16905842	.	A	G	42.24	PASS	AC=1;AF=0.571;AN=2;DP=89;FractionInformativeReads=1;set=variant5-variant11-variant12-variant13-variant15-filterInvariant18-variant19-variant21-variant23-variant29-variant31-variant34-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:169,0,104:4,0,3,2
chr1	16907105	.	T	C	67.06	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=557;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:239,29:268:99:239,0,10601:213,26,25,4
chr1	16907107	.	A	C	508.11	PASS	AC=1;AF=0.5;AN=2;DP=5289;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant9-variant11-variant12-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-filterInvariant26-variant31-variant32-variant33-filterInvariant34-variant35-variant37-filterInvariant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:214,73:287:99:1970,0,9209:186,28,65,8
chr1	16907110	.	T	C	3285.55	PASS	AC=1;AF=0.5;AN=2;DP=8583;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:85,225:310:99:8578,0,2159:69,16,199,26
chr1	16907124	.	A	C	4836.66	PASS	AC=1;AF=0.5;AN=2;DP=11837;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:83,333:416:99:10974,0,1684:65,18,270,63
chr1	16907165	.	G	A	1321.35	PASS	AC=1;AF=0.5;AN=2;DP=16925;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant11-filterInvariant12-variant14-variant15-variant16-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-variant26-filterInvariant28-filterInvariant30-filterInvariant31-filterInvariant32-variant34-variant35-variant36-variant37-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:697,209:906:99:4125,0,20080:478,219,154,55
chr1	16907328	.	G	T	17721.3	PASS	AC=1;AF=0.511;AN=2;DP=60220;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:307,1882:2189:99:46322,0,3088:125,182,875,1007
chr1	16907766	.	A	G	1790.32	PASS	AC=2;AF=0.602;AN=2;DP=4209;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:7,120:127:99:4383,183,0:6,1,117,3
chr1	16907854	.	T	A	6896.79	PASS	AC=1;AF=0.5;AN=2;DP=25314;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:227,588:815:99:15374,0,4808:151,76,396,192
chr1	16907871	.	C	T	8073.31	PASS	AC=1;AF=0.5;AN=2;DP=31480;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:281,745:1026:99:19238,0,5849:187,94,473,272
chr1	16907885	.	C	G	2815.29	PASS	AC=1;AF=0.5;AN=2;DP=7067;set=variant-variant8-filterInvariant15-variant21-filterInvariant27-filterInvariant30-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:1004,198:1202:99:2218,0,26609:621,383,124,74
chr1	16908115	.	A	G	3270.17	PASS	AC=1;AF=0.5;AN=2;DP=13012;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:172,263:435:99:8071,0,4219:56,116,59,204
chr1	16908914	.	G	A	88.37	PASS	AC=1;AF=0.5;AN=2;DP=1554;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:697,0,729:23,9,25,6
chr1	16908930	.	T	C	108.12	PASS	AC=1;AF=0.5;AN=2;DP=611;FractionInformativeReads=1;set=variant3-variant7-filterInvariant15-filterInvariant16-filterInvariant18-variant20-variant26-variant30-variant34-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,19:99:99:200,0,2029:58,22,13,6
chr1	16908989	.	C	T	186.1	PASS	AC=1;AF=0.5;AN=2;DP=1331;set=variant2-variant3-filterInvariant4-variant7-variant11-variant12-variant15-filterInvariant16-variant18-variant20-variant21-variant22-variant26-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,32:97:99:534,0,1540:42,23,19,13
chr1	16909052	.	C	T	607.85	PASS	AC=2;AF=0.966;AN=2;DP=1649;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2600,230,0:0,0,26,50
chr1	16909100	.	G	C	38.96	PASS	AC=1;AF=0.5;AN=2;DP=825;FS=0;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:11,21:32:99:599,0,266:0,11,0,21
chr1	16909129	.	T	C	81.22	PASS	AC=1;AF=0.523;AN=2;DP=748;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:7,21:28:99:652,0,148:0,7,0,21
chr1	16909376	.	GT	G	37.69	PASS	AC=1;AF=0.625;AN=2;DP=120;FractionInformativeReads=1;set=variant9-variant15-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:94:94,0,94:2,1,2,1
chr1	16910040	.	A	G	360.87	PASS	AC=1;AF=0.5;AN=2;DP=678;set=variant13-filterInvariant15-filterInvariant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:184,25:209:99:208,0,6880:148,36,19,6
chr1	16910064	.	A	G	2984.01	PASS	AC=1;AF=0.534;AN=2;DP=10210;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,260:317:99:7603,0,753:32,25,182,78
chr1	16910249	.	T	C	399.42	PASS	AC=1;AF=0.5;AN=2;DP=1971;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant33-variant34-variant36-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,15:73:99:407,0,1942:2,56,1,14
chr1	16910302	.	C	T	42.18	PASS	AC=1;AF=0.5;AN=2;DP=362;FractionInformativeReads=1;set=variant2-variant3-variant4-variant11-variant12-variant14-variant15-variant16-variant19-variant21-filterInvariant25-filterInvariant27-variant29-filterInvariant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,6:29:99:102,0,829:1,22,3,3
chr1	16911943	.	T	A	487.8	PASS	AC=1;AF=0.5;AN=2;DP=797;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:7,24:31:99:966,0,222:3,4,10,14
chr1	16911946	.	G	A	487.8	PASS	AC=1;AF=0.5;AN=2;DP=779;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,23:30:99:966,0,222:3,4,9,14
chr1	16912014	.	A	C	474.91	PASS	AC=1;AF=0.5;AN=2;DP=614;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,18:25:99:693,0,204:4,3,4,14
chr1	16912015	.	G	A	43.56	PASS	AC=1;AF=0.5;AN=2;DP=403;set=variant-variant3-variant4-variant5-variant9-variant11-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:326,0,530:8,6,0,10
chr1	16912231	.	A	G	129.91	PASS	AC=1;AF=0.5;AN=2;DP=874;set=variant2-filterInvariant6-variant8-variant10-variant13-filterInvariant15-variant16-variant17-variant19-filterInvariant21-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:72,11:83:85:85,0,1891:26,46,5,6
chr1	16913584	.	A	C	656.15	PASS	AC=1;AF=0.526;AN=2;DP=5700;set=variant10-variant12-filterInvariant13-variant14-variant15-filterInvariant18-variant19-variant20-filterInvariant25-filterInvariant26-filterInvariant29-filterInvariant31-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:157,142:299:99:3234,0,3271:90,67,57,85
chr1	16913612	.	G	A	292.39	PASS	AC=1;AF=0.529;AN=2;DP=3902;set=filterInvariant10-variant12-filterInvariant13-variant14-variant15-filterInvariant18-variant19-variant20-variant22-filterInvariant25-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:177,109:286:99:2593,0,3708:96,81,34,75
chr1	16913677	.	T	C	351.66	PASS	AC=1;AF=0.688;AN=2;DP=525;set=variant15-filterInvariant19-variant20-variant34-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:118,20:138:99:380,0,2969:46,72,1,19
chr1	16914139	.	C	A	1736.14	PASS	AC=1;AF=0.5;AN=2;DP=5556;set=variant-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant29-variant31-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:96,178:274:99:5097,0,2757:70,26,124,54
chr1	16914141	.	T	C	38.18	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1116;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:248,33:281:99:288,0,10388:168,80,30,3
chr1	16914160	.	G	A	601.13	PASS	AC=1;AF=0.5;AN=2;DP=11282;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:280,65:345:99:1864,0,11680:175,105,61,4
chr1	16914168	.	C	G	1250.03	PASS	AC=1;AF=0.5;AN=2;DP=12956;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:296,69:365:99:1952,0,11921:184,112,68,1
chr1	16914332	.	A	C	502.07	PASS	AC=1;AF=0.5;AN=2;DP=5207;set=filterInvariant-filterInvariant8-filterInvariant11-filterInvariant15-filterInvariant16-variant17-filterInvariant21-variant27-filterInvariant30	GT:AD:DP:GQ:PL:SB	0/1:684,85:769:99:114,0,17563:266,418,39,46
chr1	16914396	.	C	T	1199.27	PASS	AC=1;AF=0.5;AN=2;DP=12760;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:238,128:366:99:3952,0,8901:71,167,35,93
chr1	16914415	.	A	G	712.43	PASS	AC=1;AF=0.5;AN=2;DP=8760;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:182,81:263:99:3078,0,7525:52,130,15,66
chr1	16914442	.	A	G	230.41	PASS	AC=1;AF=0.5;AN=2;DP=2309;set=variant-filterInvariant2-filterInvariant3-variant4-variant7-filterInvariant8-variant11-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant26-variant33-filterInvariant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,39:141:99:919,0,3098:23,79,1,38
chr1	16915357	.	C	T	188.37	PASS	AC=1;AF=0.5;AN=2;DP=348;FractionInformativeReads=1;set=filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant13-variant15-variant16-variant17-variant19-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:69:69,0,257:3,8,2,2
chr1	16915611	.	T	C	32.95	DRAGENHardSNP	AC=1;AF=0.569;AN=2;DP=281;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,12:14:48:260,0,48:1,1,8,4
chr1	16916358	.	G	C	2143.08	PASS	AC=1;AF=0.548;AN=2;DP=5054;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,91:133:99:2670,0,699:17,25,61,30
chr1	16916515	.	G	A	71.75	PASS	AC=1;AF=0.5;AN=2;DP=4799;set=filterInvariant2-filterInvariant3-variant4-variant11-variant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant26-filterInvariant28-variant34-variant35-filterInvariant36-variant37-filterInvariant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:245,60:305:99:1001,0,6897:119,126,45,15
chr1	16916569	.	A	G	505.8	PASS	AC=1;AF=0.5;AN=2;DP=9782;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:175,127:302:99:2710,0,4598:67,108,70,57
chr1	16916603	.	C	A	3327.64	PASS	AC=2;AF=0.693;AN=2;DP=7718;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,242:242:99:7614,724,0:0,0,95,147
chr1	16918255	.	A	C	385.75	PASS	AC=1;AF=0.5;AN=2;DP=6328;set=variant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,26:189:99:316,0,5237:139,24,23,3
chr1	16918424	.	G	C	1623.27	PASS	AC=1;AF=0.5;AN=2;DP=14243;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant16-variant19-variant21-filterInvariant26-variant27-variant30-variant34-filterInvariant37-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:675,297:972:99:5683,0,17524:310,365,121,176
chr1	16918454	.	G	A	680.64	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3694;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:700,83:783:99:1121,0,29600:291,409,21,62
chr1	16918457	.	G	C	574.38	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3596;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:686,75:761:99:1024,0,29777:284,402,20,55
chr1	16918465	.	A	G	729.1	PASS	AC=1;AF=0.5;AN=2;DP=26855;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant7-filterInvariant10-variant11-variant12-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:561,158:719:99:4698,0,16318:242,319,44,114
chr1	16918473	.	G	A	685	PASS	AC=1;AF=0.5;AN=2;DP=8832;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant20-filterInvariant22-variant24-filterInvariant25-filterInvariant31-variant34-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:605,79:684:99:568,0,25227:242,363,17,62
chr1	16918486	.	C	T	541.86	PASS	AC=1;AF=0.5;AN=2;DP=4149;set=filterInvariant-variant8-variant15-filterInvariant21-filterInvariant27-filterInvariant30-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:490,114:604:99:1349,0,16846:175,315,51,63
chr1	16918502	.	A	G	5971.79	PASS	AC=1;AF=0.5;AN=2;DP=21919;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:134,331:465:99:10277,0,3008:48,86,116,215
chr1	16918888	.	C	G	219.01	PASS	AC=1;AF=0.5;AN=2;DP=2263;set=variant-variant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:97,20:117:99:320,0,2631:37,60,4,16
chr1	16918895	.	C	T	329.18	PASS	AC=1;AF=0.5;AN=2;DP=1435;set=variant-variant3-variant4-filterInvariant7-variant10-variant11-filterInvariant12-variant15-variant16-variant18-variant19-variant20-variant21-variant26-filterInvariant29-filterInvariant33-variant34-variant36-variant37-filterInvariant39-variant40-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,39:102:99:812,0,1707:20,43,15,24
chr1	16950261	.	G	C	644.43	PASS	AC=1;AF=0.5;AN=2;DP=4899;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant24-variant25-variant26-variant27-filterInvariant31-filterInvariant34-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,93:260:99:1942,0,4724:112,55,53,40
chr1	16950470	.	C	T	467.23	PASS	AC=1;AF=0.5;AN=2;DP=4180;set=variant-variant5-filterInvariant9-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant18-filterInvariant20-variant21-filterInvariant22-filterInvariant25-filterInvariant26-filterInvariant31-filterInvariant35-filterInvariant37-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:151,80:231:99:1793,0,3874:55,96,32,48
chr1	16953781	.	A	G	771.99	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1635;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:766,110:876:99:800,0,19957:401,365,50,60
chr1	16953827	.	G	GC	503.83	PASS	AC=1;AF=0.5;AN=2;DP=15624;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant9-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant18-variant19-variant21-variant22-variant24-variant29-filterInvariant31-variant33-variant34-filterInvariant36-filterInvariant37-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:498,137:635:99:2705,0,15199:211,287,54,83
chr1	16953881	.	C	G	2461.43	PASS	AC=1;AF=0.5;AN=2;DP=12528;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,268:381:99:7700,0,3645:43,70,79,189
chr1	16953889	.	G	C	502.34	PASS	AC=1;AF=0.5;AN=2;DP=9403;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant9-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant29-variant31-variant33-variant34-filterInvariant35-variant36-variant37-filterInvariant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:240,104:344:99:2055,0,9573:64,176,39,65
chr1	16955289	.	A	G	48.67	PASS	AC=1;AF=0.5;AN=2;DP=1929;MQ=60;set=variant-variant5-variant9-filterInvariant11-variant12-variant13-variant14-variant15-variant18-variant20-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant29-variant31-variant33-variant34-variant35-filterInvariant37-filterInvariant38-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,24:87:99:489,0,1703:24,39,9,15
chr1	16969381	.	C	T	2261.75	PASS	AC=1;AF=0.523;AN=2;DP=14454;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,311:371:99:8729,0,635:29,31,130,181
chr1	16971948	.	C	G	56.64	PASS	AC=1;AF=0.5;AN=2;DP=6045;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,68:181:99:1645,0,3486:84,29,46,22
chr1	16972067	.	C	T	690.83	PASS	AC=1;AF=0.5;AN=2;DP=14829;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant18-filterInvariant19-filterInvariant20-variant21-variant22-variant25-filterInvariant26-variant27-filterInvariant28-filterInvariant30-variant31-variant32-filterInvariant34-filterInvariant35-filterInvariant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:449,163:612:99:3465,0,16055:225,224,99,64
chr1	16972068	.	A	G	2913.55	PASS	AC=1;AF=0.5;AN=2;DP=18980;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:254,361:615:99:11500,0,5763:117,137,207,154
chr1	16972134	.	C	T	210.67	PASS	AC=1;AF=0.5;AN=2;DP=11824;set=filterInvariant4-variant5-variant9-variant10-variant13-filterInvariant15-variant16-filterInvariant17-variant18-variant19-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-variant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant39-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:523,66:589:90:90,0,13484:260,263,23,43
chr1	16972221	.	G	A	367.4	PASS	AC=1;AF=0.5;AN=2;DP=2266;set=variant-filterInvariant2-variant3-filterInvariant4-variant11-variant15-variant16-variant18-variant26-filterInvariant34-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,75:240:99:1565,0,4590:57,108,23,52
chr1	16972940	.	G	A	6661.85	PASS	AC=1;AF=0.513;AN=2;DP=41528;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:291,1175:1466:99:29970,0,3947:156,135,627,548
chr1	16973057	.	G	A	1207.92	PASS	AC=1;AF=0.5;AN=2;DP=7130;set=variant-variant2-variant3-variant4-variant11-variant15-variant16-variant18-variant26-variant34-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:505,315:820:99:7264,0,13603:197,308,130,185
chr1	16973152	.	A	G	2710.95	PASS	AC=1;AF=0.513;AN=2;DP=16123;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,395:539:99:11463,0,2754:75,69,204,191
chr1	16973184	.	G	A	2493.29	PASS	AC=1;AF=0.5;AN=2;DP=16940;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,378:545:99:9876,0,3935:92,75,196,182
chr1	16973388	.	C	T	110.61	PASS	AC=1;AF=0.525;AN=2;DP=5866;set=filterInvariant3-filterInvariant4-variant5-filterInvariant9-filterInvariant10-variant11-variant15-filterInvariant16-filterInvariant19-variant21-filterInvariant26-variant34-variant35-filterInvariant36-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:195,51:246:99:927,0,5211:102,93,18,33
chr1	16973400	.	G	A	227.7	PASS	AC=1;AF=0.522;AN=2;DP=6330;set=filterInvariant4-variant5-filterInvariant9-variant11-filterInvariant12-filterInvariant13-variant15-variant16-filterInvariant18-filterInvariant19-variant21-variant25-filterInvariant26-filterInvariant29-variant33-variant34-variant35-filterInvariant36-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:196,47:243:99:776,0,5103:100,96,21,26
chr1	16973423	.	C	T	75.13	PASS	AC=1;AF=0.5;AN=2;DP=3306;set=filterInvariant-filterInvariant5-variant11-filterInvariant15-variant21-filterInvariant26-variant34-filterInvariant35-filterInvariant36-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:205,36:241:99:493,0,5569:114,91,23,13
chr1	16973519	.	G	A	775.89	PASS	AC=1;AF=0.5;AN=2;DP=13645;set=filterInvariant-filterInvariant3-filterInvariant4-variant8-filterInvariant11-filterInvariant13-filterInvariant15-variant21-filterInvariant22-variant24-filterInvariant27-filterInvariant28-variant30-filterInvariant32-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:943,153:1096:99:1336,0,25368:588,355,108,45
chr1	16973606	.	G	T	834.65	PASS	AC=1;AF=0.5;AN=2;DP=38152;set=filterInvariant3-filterInvariant4-filterInvariant5-variant9-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-variant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-variant24-filterInvariant26-variant29-filterInvariant31-variant33-variant34-filterInvariant36-filterInvariant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:1581,382:1963:99:4526,0,38499:818,763,190,192
chr1	16973841	.	G	A	617.72	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1513;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:382,68:450:99:646,0,9919:268,114,55,13
chr1	16973919	.	A	G	1701.58	PASS	AC=1;AF=0.5;AN=2;DP=40043;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:874,329:1203:99:4465,0,18939:476,398,165,164
chr1	16973996	.	A	G	2704.38	PASS	AC=1;AF=0.5;AN=2;DP=25098;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:753,116:869:99:605,0,17430:299,454,36,80
chr1	16974010	.	G	C	1226.82	PASS	AC=1;AF=0.5;AN=2;DP=18974;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:610,75:685:60:60,0,16201:245,365,20,55
chr1	16974013	.	C	A	1299.15	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5255;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:556,105:661:99:706,0,20272:209,347,45,60
chr1	16974021	.	G	A	2594.63	PASS	AC=1;AF=0.5;AN=2;DP=16953;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant34-filterInvariant35-variant36-variant37-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:226,362:588:99:7781,0,6122:83,143,145,217
chr1	16974243	.	G	C	209.6	PASS	AC=1;AF=0.5;AN=2;DP=3318;set=variant2-filterInvariant3-filterInvariant9-variant11-filterInvariant13-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-variant21-filterInvariant24-variant25-variant29-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant40-variant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:136,16:152:99:105,0,4036:119,17,16,0
chr1	16974256	.	G	C	2620.2	PASS	AC=1;AF=0.511;AN=2;DP=9597;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:57,147:204:99:4538,0,1229:39,18,145,2
chr1	16974277	.	A	C	289.4	PASS	AC=1;AF=0.5;AN=2;DP=4057;set=filterInvariant2-filterInvariant4-filterInvariant5-variant11-variant15-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant25-filterInvariant34-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:329,61:390:99:916,0,8747:235,94,52,9
chr1	16974511	.	G	A	532.37	PASS	AC=1;AF=0.5;AN=2;DP=27099;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:504,235:739:99:4788,0,13356:284,220,126,109
chr1	16974592	.	C	T	829.52	PASS	AC=1;AF=0.5;AN=2;DP=9683;set=filterInvariant3-filterInvariant4-filterInvariant8-filterInvariant15-filterInvariant18-filterInvariant24-filterInvariant28-filterInvariant32-filterInvariant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:892,142:1034:99:640,0,23104:475,417,65,77
chr1	16974637	.	T	C	4034.58	PASS	AC=1;AF=0.5;AN=2;DP=35195;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:725,235:960:99:5879,0,17789:359,366,77,158
chr1	16974662	.	C	A	3091.65	PASS	AC=1;AF=0.5;AN=2;DP=23683;set=variant5-variant9-variant10-variant12-variant13-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:705,107:812:99:893,0,29049:327,378,33,74
chr1	16974666	.	C	T	2542.03	PASS	AC=1;AF=0.5;AN=2;DP=22851;set=variant-variant2-variant3-variant4-filterInvariant5-variant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:301,481:782:99:10656,0,8441:119,182,223,258
chr1	16974758	.	G	A	1248.58	PASS	AC=1;AF=0.514;AN=2;DP=8461;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:117,108:225:99:3641,0,3082:63,54,4,104
chr1	16974786	.	G	C	426.13	PASS	AC=1;AF=0.5;AN=2;DP=5939;set=filterInvariant-filterInvariant2-filterInvariant3-variant5-filterInvariant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant15-filterInvariant16-variant18-filterInvariant21-variant22-filterInvariant25-filterInvariant26-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:116,63:179:99:1910,0,3676:65,51,1,62
chr1	16974901	.	A	G	436.37	PASS	AC=1;AF=0.536;AN=2;DP=6271;set=filterInvariant11-variant12-variant13-variant15-filterInvariant16-variant18-variant21-variant22-variant33-variant34-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:303,68:371:99:2068,0,12737:163,140,56,12
chr1	16974915	.	C	T	354.63	PASS	AC=1;AF=0.529;AN=2;DP=7229;set=filterInvariant2-filterInvariant11-filterInvariant15-variant16-filterInvariant18-filterInvariant20-variant21-filterInvariant26-filterInvariant29-variant34-filterInvariant35-filterInvariant36-filterInvariant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:314,122:436:99:3263,0,12943:163,151,92,30
chr1	16974972	.	C	T	802.72	PASS	AC=1;AF=0.519;AN=2;DP=18860;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant29-filterInvariant30-variant34-variant35-variant36-variant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:315,436:751:99:9771,0,7421:150,165,288,148
chr1	16975002	.	C	T	1585.79	PASS	AC=1;AF=0.513;AN=2;DP=28075;set=variant-variant2-variant3-variant4-variant5-variant7-filterInvariant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:286,550:836:99:12388,0,6651:128,158,341,209
chr1	16975202	.	T	C	5578.5	PASS	AC=1;AF=0.5;AN=2;DP=31112;set=variant2-filterInvariant3-filterInvariant4-variant5-variant7-variant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant21-variant22-filterInvariant23-variant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:985,169:1154:99:1105,0,25211:482,503,86,83
chr1	16975214	.	G	C	1302.27	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1089;FS=3.73;FractionInformativeReads=0.999;MQ=41.09;MQRankSum=1.04;QD=1.2;ReadPosRankSum=-0.16;SOR=0.864;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:926,162:1088:99:1331,0,24170:428,498,91,71
chr1	16975230	.	G	C	5755.78	PASS	AC=2;AF=0.705;AN=2;DP=33096;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,1012:1012:99:35469,3053,0:0,0,459,553
chr1	16975268	.	T	C	370.09	PASS	AC=1;AF=0.5;AN=2;DP=3762;set=filterInvariant-variant8-filterInvariant11-filterInvariant15-filterInvariant21-filterInvariant27	GT:AD:DP:GQ:PL:SB	0/1:849,103:952:99:275,0,20960:371,478,48,55
chr1	16975289	.	T	A	48.69	PASS	AC=1;AF=0.5;AN=2;DP=4309;set=filterInvariant-variant5-filterInvariant11-filterInvariant15-filterInvariant21-filterInvariant25-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:779,133:912:99:799,0,20703:324,455,52,81
chr1	16975626	.	G	C	38.17	PASS	AC=1;AF=0.5;AN=2;DP=1467;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant7-filterInvariant8-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant21-filterInvariant24-variant25-variant26-filterInvariant31-variant34-variant36-filterInvariant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,39:85:99:974,0,1262:34,12,29,10
chr1	16975724	.	GC	G	455.51	PASS	AC=1;AF=0.5;AN=2;DP=6070;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant30-variant31-variant34-variant35-variant36-variant37-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,133:275:99:3908,0,4215:84,58,81,52
chr1	16975868	.	T	A	479.95	PASS	AC=1;AF=0.516;AN=2;DP=4642;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant30-filterInvariant31-variant34-filterInvariant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,115:233:99:2611,0,2702:44,74,40,75
chr1	16975912	.	CCCTGTT	C	62.36	PASS	AC=1;AF=0.5;AN=2;DP=1757;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant9-variant11-filterInvariant14-variant15-variant16-variant18-variant20-variant21-variant26-filterInvariant27-variant34-filterInvariant35-filterInvariant37-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,37:105:99:1297,0,2725:25,43,5,32
chr1	16975947	.	C	T	297.59	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;set=variant15-variant18-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,13:62:99:326,0,1444:29,20,0,13
chr1	16975994	.	T	C	97.74	PASS	AC=1;AF=0.516;AN=2;DP=3085;set=filterInvariant2-filterInvariant3-variant5-variant9-variant10-variant11-variant12-variant13-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-filterInvariant22-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,22:62:99:600,0,938:19,21,18,4
chr1	16976193	.	C	T	99.19	PASS	AC=1;AF=0.515;AN=2;DP=5967;set=filterInvariant3-variant5-filterInvariant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant31-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:97,36:133:99:623,0,2665:61,36,12,24
chr1	16976539	.	A	G	232.05	PASS	AC=1;AF=0.513;AN=2;DP=4751;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,69:102:99:1745,0,977:21,12,54,15
chr1	16976569	.	G	A	380.55	PASS	AC=1;AF=0.5;AN=2;DP=8060;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-filterInvariant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant37-filterInvariant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,70:229:99:1309,0,3997:110,49,51,19
chr1	16976585	.	C	T	519.88	PASS	AC=1;AF=0.5;AN=2;DP=8614;set=variant-filterInvariant3-variant4-filterInvariant5-variant6-variant8-variant9-variant11-variant12-filterInvariant14-variant15-variant16-filterInvariant18-variant20-variant21-variant22-variant23-filterInvariant24-variant26-variant27-variant28-filterInvariant29-filterInvariant32-variant33-variant34-variant37-filterInvariant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:248,69:317:99:1082,0,6173:168,80,44,25
chr1	16976641	.	C	T	48.8	PASS	AC=1;AF=0.5;AN=2;DP=22201;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant37-filterInvariant38-filterInvariant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:539,88:627:99:2005,0,22448:280,259,46,42
chr1	16976649	.	C	T	2947.95	PASS	AC=1;AF=0.5;AN=2;DP=20832;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant25-variant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant37-filterInvariant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:563,90:653:99:1989,0,22861:287,276,46,44
chr1	16976679	.	G	A	1400.21	PASS	AC=1;AF=0.5;AN=2;DP=21684;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:483,107:590:99:1390,0,11954:220,263,56,51
chr1	16976772	.	G	T	226.95	PASS	AC=1;AF=0.5;AN=2;DP=3223;set=variant-filterInvariant5-filterInvariant7-filterInvariant9-variant10-filterInvariant13-filterInvariant14-variant15-filterInvariant17-variant18-variant19-variant20-variant21-variant26-filterInvariant27-variant29-variant30-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,43:137:99:846,0,2387:26,68,9,34
chr1	16976786	.	G	C	433.21	PASS	AC=1;AF=0.5;AN=2;DP=1284;set=variant-filterInvariant5-variant6-variant8-filterInvariant10-filterInvariant15-filterInvariant20-variant21-variant26-variant27-variant29-variant30-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,10:78:76:76,0,1844:18,50,1,9
chr1	17017621	.	TAGA	T	1473.67	PASS	AC=1;AF=0.5;AN=2;DP=5692;set=variant-variant6-variant8-variant11-variant15-variant17-variant21-variant26-variant27-variant34	GT:AD:DP:GQ:PL:SB	0/1:646,95:741:99:1939,0,26655:334,312,49,46
chr1	17017675	.	C	A	3900.56	PASS	AC=1;AF=0.524;AN=2;DP=17980;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,504:683:99:12272,0,3284:76,103,221,283
chr1	17017717	.	C	T	1147.63	PASS	AC=1;AF=0.5;AN=2;DP=10038;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:357,123:480:99:3589,0,13279:141,216,47,76
chr1	17017734	.	C	T	877.23	PASS	AC=1;AF=0.5;AN=2;DP=8029;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:290,96:386:99:3130,0,11843:102,188,31,65
chr1	17017739	.	G	A	277.27	PASS	AC=1;AF=0.5;AN=2;DP=2607;set=filterInvariant-variant8-variant15-variant17-variant21-filterInvariant26-variant27-filterInvariant30-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:288,58:346:99:781,0,9539:97,191,18,40
chr1	17017747	.	A	G	373.28	PASS	AC=1;AF=0.5;AN=2;DP=2560;set=variant-variant6-variant8-filterInvariant11-filterInvariant15-filterInvariant17-filterInvariant21-filterInvariant26-variant27-variant34	GT:AD:DP:GQ:PL:SB	0/1:280,32:312:99:146,0,9502:83,197,10,22
chr1	17022952	.	C	A	11693.4	PASS	AC=2;AF=0.932;AN=2;DP=20684;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,836:837:99:24366,2483,0:0,1,480,356
chr1	17023110	.	G	A	405.18	PASS	AC=1;AF=0.5;AN=2;DP=19688;set=filterInvariant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-filterInvariant27-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant37-variant38-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:797,292:1089:99:5444,0,21156:385,412,152,140
chr1	17023143	.	C	T	415.59	PASS	AC=1;AF=0.5;AN=2;DP=22679;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:773,263:1036:99:5248,0,21131:386,387,126,137
chr1	17023182	.	C	G	6145.8	PASS	AC=1;AF=0.5;AN=2;DP=22464;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:446,554:1000:99:15044,0,11130:236,210,299,255
chr1	17023376	.	C	T	2593.56	PASS	AC=1;AF=0.5;AN=2;DP=42153;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1317,496:1813:99:9585,0,34475:631,686,240,256
chr1	17023403	.	G	A	2594.41	PASS	AC=1;AF=0.5;AN=2;DP=32572;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-filterInvariant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1204,458:1662:99:8722,0,31577:538,666,203,255
chr1	17023483	.	C	T	1419.68	PASS	AC=1;AF=0.5;AN=2;DP=18766;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:527,232:759:99:5012,0,15205:162,365,76,156
chr1	17023509	.	T	C	1217.62	PASS	AC=1;AF=0.5;AN=2;DP=11889;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:307,148:455:99:3764,0,8938:75,232,34,114
chr1	17023511	.	C	A	13983.3	PASS	AC=2;AF=0.659;AN=2;DP=12692;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,439:439:99:17097,1338,0:0,0,102,337
chr1	17023569	.	T	C	5032.01	PASS	AC=2;AF=0.909;AN=2;DP=3717;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:5358,399,0:0,0,13,120
chr1	17025992	.	G	A	682.13	PASS	AC=1;AF=0.5;AN=2;DP=6791;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-variant27-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:198,153:351:99:3451,0,7464:110,88,88,65
chr1	17026004	.	C	G	4742.66	PASS	AC=1;AF=0.524;AN=2;DP=9741;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:177,197:374:99:4593,0,6229:92,85,108,89
chr1	17026040	.	G	GGCGGCGGCGGCGGCA	1149.5	PASS	AC=1;AF=0.5;AN=2;DP=2345;set=variant-filterInvariant6-variant8-filterInvariant15-variant17-filterInvariant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:430,44:474:99:166,0,17970:218,212,23,21
chr1	17026043	.	G	GGCGGCA,GGCA,GGCAGCAGCA	240.48	PASS	AC=1,0,0;AF=0.051,0.436,0.013;AN=2;DP=12430;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:472:99:160,141,82,89
chr1	17026065	.	C	T	1381.94	PASS	AC=1;AF=0.5;AN=2;DP=3386;set=variant-variant6-variant8-filterInvariant15-variant17-filterInvariant21-filterInvariant26-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:467,63:530:99:1028,0,19217:236,231,32,31
chr1	17026087	.	G	A	2582.11	PASS	AC=1;AF=0.5;AN=2;DP=13055;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:277,272:549:99:7377,0,6675:135,142,130,142
chr1	17026137	.	G	C	125.35	PASS	AC=1;AF=0.5;AN=2;DP=2153;MQ=60;set=filterInvariant-filterInvariant6-variant8-filterInvariant15-filterInvariant21-filterInvariant26-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:380,64:444:99:531,0,11463:158,222,31,33
chr1	17026177	.	C	CA	113.31	PASS	AC=1;AF=0.5;AN=2;DP=2316;MQ=60;set=filterInvariant-variant6-variant8-filterInvariant11-variant15-filterInvariant17-filterInvariant21-filterInvariant26-filterInvariant27-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:253,41:294:99:928,0,10582:90,163,16,25
chr1	17026179	.	C	G	122.36	PASS	AC=1;AF=0.5;AN=2;DP=2245;MQ=60;set=filterInvariant-variant6-variant8-filterInvariant11-variant15-filterInvariant17-filterInvariant21-variant26-filterInvariant27-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:254,41:295:99:937,0,10517:89,165,16,25
chr1	17026304	.	G	A	181.16	PASS	AC=1;AF=0.5;AN=2;DP=902;set=variant-variant8-variant15-variant17-filterInvariant21-filterInvariant26-filterInvariant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:107,23:130:99:467,0,3610:75,32,12,11
chr1	17026466	.	C	T	984.71	PASS	AC=1;AF=0.5;AN=2;DP=6137;set=filterInvariant-variant6-variant8-filterInvariant15-filterInvariant17-filterInvariant21-filterInvariant26-filterInvariant27-filterInvariant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:759,128:887:99:1119,0,20099:405,354,68,60
chr1	17026504	.	G	A	806.49	PASS	AC=1;AF=0.5;AN=2;DP=6855;set=filterInvariant-variant6-variant8-filterInvariant15-filterInvariant17-filterInvariant21-filterInvariant26-variant27-filterInvariant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:841,150:991:99:1267,0,21926:406,435,72,78
chr1	17026551	.	G	C	893.59	PASS	AC=1;AF=0.5;AN=2;DP=17953;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:643,206:849:99:4005,0,16635:280,363,83,123
chr1	17026617	.	G	A	803.53	PASS	AC=1;AF=0.5;AN=2;DP=3188;set=variant-variant6-variant8-filterInvariant15-filterInvariant17-filterInvariant21-variant26-filterInvariant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:365,63:428:99:638,0,10816:130,235,23,40
chr1	17029281	.	G	C	756.37	PASS	AC=1;AF=0.5;AN=2;DP=2139;set=variant-variant6-variant8-variant11-filterInvariant15-variant17-filterInvariant21-variant26-variant27-variant30-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:211,33:244:99:449,0,6860:48,163,9,24
chr1	17029462	.	A	G	390.68	PASS	AC=1;AF=0.5;AN=2;DP=5548;set=filterInvariant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:214,71:285:99:1192,0,4963:121,93,43,28
chr1	17029513	.	C	G	2233.74	PASS	AC=2;AF=0.563;AN=2;DP=7022;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,259:259:99:7310,776,0:0,0,126,133
chr1	17030325	.	A	G	2257.9	PASS	AC=2;AF=0.583;AN=2;DP=3569;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5303,459,0:0,0,107,46
chr1	17030336	.	C	T	1046.55	PASS	AC=1;AF=0.5;AN=2;DP=3347;MQ=60;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,100:171:99:2900,0,1808:46,25,69,31
chr1	17030504	.	T	A	2786.23	PASS	AC=1;AF=0.5;AN=2;DP=11266;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:377,155:532:99:5373,0,16439:192,185,86,69
chr1	17030515	.	G	A	3138.57	PASS	AC=1;AF=0.5;AN=2;DP=12237;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:412,167:579:99:5743,0,18499:214,198,93,74
chr1	17030518	.	C	T	3210.33	PASS	AC=1;AF=0.5;AN=2;DP=12496;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:416,165:581:99:5695,0,18375:217,199,91,74
chr1	17030519	.	T	G	3216.35	PASS	AC=1;AF=0.5;AN=2;DP=12620;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:417,164:581:99:5698,0,18353:217,200,91,73
chr1	17030590	.	G	A	2458.17	PASS	AC=1;AF=0.5;AN=2;DP=15584;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant24-filterInvariant25-filterInvariant26-variant27-variant29-variant31-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:475,185:660:99:3564,0,12502:232,243,91,94
chr1	17030716	.	G	A	1940.21	PASS	AC=1;AF=0.5;AN=2;DP=5500;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:118,137:255:99:3738,0,3176:36,82,39,98
chr1	17030729	.	C	T	923.14	PASS	AC=1;AF=0.5;AN=2;DP=4093;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-filterInvariant26-filterInvariant27-variant29-filterInvariant31-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,69:217:99:1807,0,4361:43,105,17,52
chr1	17033758	.	A	G	7140.75	PASS	AC=1;AF=0.512;AN=2;DP=15223;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,574:648:99:15911,0,480:47,27,349,225
chr1	17033805	.	C	T	5734.92	PASS	AC=1;AF=0.5;AN=2;DP=18201;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:393,595:988:99:13839,0,9137:222,171,342,253
chr1	17033854	.	C	T	12121.9	PASS	AC=1;AF=0.5;AN=2;DP=29014;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:308,884:1192:99:22375,0,5760:164,144,475,409
chr1	17034041	.	T	C	14198.5	PASS	AC=2;AF=0.693;AN=2;DP=15527;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,695:695:99:22720,2085,0:0,0,325,370
chr1	17034125	.	C	CAGCT	5556.62	PASS	AC=1;AF=0.5;AN=2;DP=9986;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:232,361:593:99:14305,0,8433:100,132,155,206
chr1	17034250	.	C	G	755.61	PASS	AC=1;AF=0.561;AN=2;DP=2078;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,60:109:99:1916,0,1477:33,16,44,16
chr1	17034455	.	CGCGCGCGT	C	1366.12	PASS	AC=1;AF=0.5;AN=2;DP=14834;set=variant-variant2-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:665,240:905:99:7946,0,28286:360,305,127,113
chr1	17034595	.	C	G	67.32	PASS	AC=1;AF=0.5;AN=2;DP=2999;set=filterInvariant-variant6-variant8-variant15-filterInvariant17-filterInvariant21-filterInvariant26-variant27-filterInvariant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:385,62:447:99:1149,0,17485:132,253,24,38
chr1	17034614	.	A	ACC	43.49	PASS	AC=1;AF=0.5;AN=2;DP=2137;set=filterInvariant-variant6-variant8-variant15-filterInvariant17-filterInvariant21-filterInvariant26-variant27-filterInvariant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:280,42:322:99:947,0,14831:88,192,12,30
chr1	17034618	.	C	A	257.66	PASS	AC=1;AF=0.5;AN=2;DP=1826;set=filterInvariant-variant6-variant8-filterInvariant11-variant15-variant17-filterInvariant26-filterInvariant27-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:246,49:295:99:669,0,7920:75,171,14,35
chr1	17044433	.	C	T	81.08	PASS	AC=1;AF=0.5;AN=2;DP=1151;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant26-variant27-variant29-filterInvariant31-variant34-variant35-variant36-variant37-variant38-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,19:66:99:521,0,1650:41,6,15,4
chr1	17044457	.	G	C	793.85	PASS	AC=2;AF=0.875;AN=2;DP=2664;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3512,276,0:0,0,74,18
chr1	17044511	.	T	C	2005.33	PASS	AC=1;AF=0.583;AN=2;DP=6442;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,218:270:99:6029,0,905:32,20,144,74
chr1	17044589	.	G	A	155.14	PASS	AC=1;AF=0.514;AN=2;DP=11031;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:436,94:530:99:1097,0,11421:230,206,51,43
chr1	17044662	.	G	C	435.09	PASS	AC=1;AF=0.5;AN=2;DP=7400;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-filterInvariant27-variant31-variant32-variant33-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:319,130:449:99:2476,0,8366:133,186,56,74
chr1	17046361	.	A	T	1766.84	PASS	AC=1;AF=0.5;AN=2;DP=5813;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,101:244:99:2701,0,4100:108,35,75,26
chr1	17046456	.	T	C	5225.26	PASS	AC=1;AF=0.5;AN=2;DP=17844;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:443,331:774:99:8191,0,11942:265,178,206,125
chr1	17046549	.	G	A	4332.86	PASS	AC=1;AF=0.513;AN=2;DP=29686;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:701,509:1210:99:11354,0,17580:346,355,263,246
chr1	17046595	.	T	C	7070.5	PASS	AC=1;AF=0.5;AN=2;DP=28024;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:655,510:1165:99:12266,0,18667:300,355,220,290
chr1	17046613	.	C	T	14940.8	PASS	AC=1;AF=0.524;AN=2;DP=25768;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,889:1050:99:30231,0,1739:69,92,378,511
chr1	17046698	.	C	G	1268.91	PASS	AC=1;AF=0.5;AN=2;DP=7980;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-filterInvariant27-variant28-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:291,117:408:99:2458,0,8319:87,204,34,83
chr1	17083652	.	C	T	82.17	PASS	AC=1;AF=0.5;AN=2;DP=2934;set=filterInvariant3-variant5-variant9-variant10-filterInvariant11-filterInvariant13-filterInvariant15-variant16-filterInvariant18-filterInvariant19-filterInvariant22-variant24-variant25-filterInvariant27-variant29-variant31-filterInvariant32-variant33-filterInvariant34-filterInvariant36-filterInvariant37-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:167,25:192:67:67,0,5758:99,68,16,9
chr1	17083671	.	C	G	836.95	PASS	AC=1;AF=0.5;AN=2;DP=4245;set=variant-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-filterInvariant23-filterInvariant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,102:203:99:3872,0,4542:54,47,58,44
chr1	17083685	.	C	A	826.47	PASS	AC=1;AF=0.5;AN=2;DP=4431;set=variant-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,101:201:99:3890,0,4499:52,48,56,45
chr1	17083787	.	G	A	591.7	PASS	AC=1;AF=0.5;AN=2;DP=618;set=variant-filterInvariant8-variant15-variant27-variant34	GT:AD:DP:GQ:PL:SB	0/1:66,15:81:99:329,0,2097:11,55,2,13
chr1	17083807	.	T	C	306.73	PASS	AC=2;AF=0.658;AN=2;DP=3381;set=variant-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1524,114,0:0,0,7,29
chr1	17083837	.	T	C	839.19	PASS	AC=1;AF=0.538;AN=2;DP=1657;set=variant-variant5-variant6-variant8-variant11-filterInvariant15-variant17-variant21-filterInvariant24-variant26-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,5:42:70:70,0,1111:9,28,2,3
chr1	17083888	.	C	T	406.38	PASS	AC=1;AF=0.5;AN=2;DP=1615;set=variant-variant5-variant6-filterInvariant8-variant9-variant11-variant14-variant15-variant17-variant20-variant21-filterInvariant24-variant26-variant27-variant29-variant31-variant33-variant34-variant37-filterInvariant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:736,0,377:8,6,10,17
chr1	17083919	.	G	A	178.89	PASS	AC=1;AF=0.524;AN=2;DP=1253;set=variant-variant3-filterInvariant6-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant23-variant24-variant27-variant28-variant30-variant34-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,13:47:99:370,0,1111:16,18,12,1
chr1	17083929	.	A	C	95.05	PASS	AC=1;AF=0.548;AN=2;DP=921;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant26-filterInvariant27-variant28-variant29-filterInvariant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,10:46:99:212,0,1266:27,9,1,9
chr1	17083984	.	C	T	300.72	PASS	AC=1;AF=0.5;AN=2;DP=1858;set=filterInvariant5-variant6-variant8-filterInvariant9-filterInvariant10-variant14-variant15-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-variant26-filterInvariant27-variant29-filterInvariant31-filterInvariant34-filterInvariant36-filterInvariant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,31:122:99:686,0,2661:84,7,24,7
chr1	17084006	.	C	T	725.92	PASS	AC=1;AF=0.5;AN=2;DP=7200;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-variant39-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,177:249:99:4603,0,1453:60,12,142,35
chr1	17084021	.	C	G	140.87	PASS	AC=1;AF=0.5;AN=2;DP=4146;set=variant-filterInvariant4-filterInvariant6-variant8-filterInvariant11-filterInvariant15-filterInvariant17-filterInvariant21-filterInvariant23-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:283,70:353:99:1015,0,7205:211,72,50,20
chr1	17084510	.	G	A	190.97	PASS	AC=1;AF=0.5;AN=2;DP=5255;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant18-filterInvariant19-variant21-variant22-filterInvariant25-variant26-filterInvariant27-filterInvariant30-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:236,112:348:99:2227,0,6111:90,146,40,72
chr1	17084536	.	TGGAACA	T	274.23	PASS	AC=1;AF=0.5;AN=2;DP=5563;set=variant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-filterInvariant19-variant21-variant22-variant26-variant27-filterInvariant30-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:215,76:291:99:2511,0,9193:82,133,18,58
chr1	17084589	.	A	T	328.84	PASS	AC=1;AF=0.5;AN=2;DP=1541;set=variant3-variant11-variant15-filterInvariant18-filterInvariant37-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:199,34:233:99:568,0,5161:85,114,2,32
chr1	17084755	.	T	C	353.26	PASS	AC=2;AF=0.597;AN=2;DP=2062;set=variant-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-filterInvariant18-variant19-filterInvariant20-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant38-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,44:46:89:1295,89,0:1,1,11,33
chr1	17084815	.	G	A	324.96	PASS	AC=1;AF=0.545;AN=2;DP=1609;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:369,0,173:6,1,9,5
chr1	17084831	.	C	G	99.16	PASS	AC=1;AF=0.5;AN=2;DP=757;FractionInformativeReads=1;set=variant3-filterInvariant4-variant7-variant11-variant13-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant21-filterInvariant30-variant34-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,11:34:99:274,0,631:21,2,11,0
chr1	17084948	.	A	C	761.89	PASS	AC=1;AF=0.5;AN=2;DP=13778;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-filterInvariant9-variant11-filterInvariant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:317,211:528:99:4862,0,7631:207,110,145,66
chr1	17084968	.	G	C	2030.43	PASS	AC=1;AF=0.5;AN=2;DP=20741;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:543,137:680:99:1852,0,13493:336,207,85,52
chr1	17085165	.	G	C,T	1891.84	PASS	AC=2,0;AF=0.864,0.125;AN=2;DP=3457;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:DP:GQ:SB	1/1:69:99:0,0,29,40
chr1	17085243	.	C	G	234.27	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=153;FS=21.342;FractionInformativeReads=1;MQ=47.11;MQRankSum=-4.699;QD=1.53;ReadPosRankSum=-1.212;SOR=2.983;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:130,23:153:99:262,0,5096:82,48,21,2
chr1	17085255	.	A	G	2348.32	PASS	AC=1;AF=0.543;AN=2;DP=3263;set=variant-filterInvariant2-variant6-variant8-variant9-filterInvariant10-variant11-variant15-filterInvariant16-variant17-variant21-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-variant34-filterInvariant35-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,109:149:99:2855,0,1347:35,5,63,46
chr1	17085265	.	T	C	452.98	PASS	AC=1;AF=0.661;AN=2;DP=3163;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant7-variant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-variant21-variant25-variant26-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant34-filterInvariant35-variant36-variant37-variant38-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,41:158:99:1485,0,4817:67,50,39,2
chr1	17085267	.	A	G	452.98	PASS	AC=1;AF=0.661;AN=2;DP=3246;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant7-variant9-filterInvariant10-variant11-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-variant21-variant25-filterInvariant26-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant34-filterInvariant35-variant36-variant37-variant38-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:118,44:162:99:1452,0,4801:67,51,42,2
chr1	17085412	.	C	T	3609.81	PASS	AC=1;AF=0.5;AN=2;DP=44576;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:899,342:1241:99:6188,0,35224:542,357,208,134
chr1	17085427	.	T	C	8636.79	PASS	AC=1;AF=0.5;AN=2;DP=51112;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:944,496:1440:99:15091,0,23394:546,398,288,208
chr1	17085502	.	T	C	16196	PASS	AC=1;AF=0.5;AN=2;DP=54761;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:372,1111:1483:99:30590,0,5706:187,185,531,580
chr1	17085564	.	A	G	8043.65	PASS	AC=1;AF=0.5;AN=2;DP=42874;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:831,396:1227:99:9374,0,21959:349,482,193,203
chr1	17085671	.	C	G	5784.23	PASS	AC=1;AF=0.5;AN=2;DP=31784;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:737,396:1133:99:9778,0,19056:310,427,173,223
chr1	17085677	.	G	A	1534.5	PASS	AC=1;AF=0.5;AN=2;DP=28718;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:965,169:1134:99:1109,0,36212:421,544,70,99
chr1	17085712	.	C	G,T	178.02	PASS	AC=0,1;AF=0.013,0.488;AN=2;DP=25661;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:988:99:349,468,64,107
chr1	17085834	.	G	T	5877.73	PASS	AC=2;AF=0.807;AN=2;DP=18352;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,567:568:99:16510,1671,0:1,0,258,309
chr1	17085908	.	C	G	1602.37	PASS	AC=1;AF=0.521;AN=2;DP=7488;set=variant-variant5-filterInvariant6-variant8-filterInvariant9-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-filterInvariant31-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:253,158:411:99:3424,0,5893:102,151,56,102
chr1	17085999	.	CCCCG	C	338.9	PASS	AC=1;AF=0.5;AN=2;DP=1498;set=variant6-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant26-variant30-filterInvariant31-variant32-variant34-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,27:79:99:549,0,1846:21,31,2,25
chr1	17086052	.	T	C	161.06	PASS	AC=2;AF=1;AN=2;DP=1498;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2145,206,0:0,0,40,29
chr1	17086439	.	C	T	48.7	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:75:75,0,374:4,12,3,4
chr1	17086450	.	C	G	211.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=395;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:202,0,204:1,8,4,6
chr1	17086464	.	T	C	172.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=385;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:161,0,204:1,8,4,5
chr1	17086870	.	T	C	331.16	PASS	AC=2;AF=1;AN=2;DP=226;FS=0;MQRankSum=-2.325;ReadPosRankSum=0.066;set=filterInvariant5-filterInvariant9-filterInvariant10-filterInvariant15-filterInvariant20-variant25-variant27-filterInvariant29-filterInvariant34-filterInvariant35-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:824,77,0:0,0,26,0
chr1	17086941	.	C	T	992.37	PASS	AC=1;AF=0.5;AN=2;DP=8169;set=variant-filterInvariant2-filterInvariant7-variant8-variant10-variant13-variant15-filterInvariant18-variant21-filterInvariant22-filterInvariant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-filterInvariant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:252,90:342:99:1970,0,7123:191,61,76,14
chr1	17087244	.	AC	A	3814.71	PASS	AC=1;AF=0.5;AN=2;DP=16616;set=variant-variant5-filterInvariant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:553,310:863:99:7580,0,18694:284,269,163,147
chr1	17087262	.	C	T	4213.48	PASS	AC=1;AF=0.5;AN=2;DP=24368;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-filterInvariant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:626,313:939:99:6396,0,20645:299,327,170,143
chr1	17087299	.	T	C	5785.07	PASS	AC=1;AF=0.5;AN=2;DP=26797;set=variant-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant39-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:643,365:1008:99:9171,0,17326:294,349,197,168
chr1	17087305	.	G	C	1321.83	PASS	AC=1;AF=0.5;AN=2;DP=27470;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:927,88:1015:99:526,0,38644:430,497,68,20
chr1	17087365	.	C	G	7328.19	PASS	AC=1;AF=0.511;AN=2;DP=34433;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:289,780:1069:99:22814,0,7039:159,130,466,314
chr1	17087465	.	G	A	1275.79	PASS	AC=1;AF=0.5;AN=2;DP=67839;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:1415,513:1928:99:8650,0,37024:720,695,268,245
chr1	17087521	.	G	A	8999.97	PASS	AC=1;AF=0.5;AN=2;DP=44376;set=variant-filterInvariant2-filterInvariant4-filterInvariant6-variant8-filterInvariant11-filterInvariant12-variant13-variant15-variant17-filterInvariant18-variant21-variant22-filterInvariant23-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant32-variant34-filterInvariant35-filterInvariant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:1734,526:2260:99:16247,0,69921:818,916,240,286
chr1	17087530	.	C	T	9010.33	PASS	AC=1;AF=0.5;AN=2;DP=20851;set=variant-filterInvariant6-variant8-variant11-variant15-variant17-variant21-filterInvariant26-variant27-filterInvariant29-variant34	GT:AD:DP:GQ:PL:SB	0/1:1721,519:2240:99:16030,0,70245:804,917,228,291
chr1	17087541	.	GGTGCT	G	10847.3	PASS	AC=1;AF=0.5;AN=2;DP=78083;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:1618,530:2148:99:17170,0,66485:739,879,244,286
chr1	17087582	.	G	A	12021.1	PASS	AC=1;AF=0.5;AN=2;DP=62467;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:979,804:1783:99:17861,0,24755:441,538,335,469
chr1	17091128	.	C	T	222.62	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=117;FS=2.098;FractionInformativeReads=1;MQ=58.18;MQRankSum=1.415;QD=1.9;ReadPosRankSum=1.119;SOR=0.969;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:97,20:117:99:251,0,2667:36,61,6,14
chr1	17197525	.	T	G	215.56	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1014;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:250,33:283:99:223,0,6740:143,107,29,4
chr1	17197563	.	G	T	3422.53	PASS	AC=1;AF=0.511;AN=2;DP=12451;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:200,196:396:99:5905,0,4678:113,87,119,77
chr1	17197571	.	G	A	585.5	PASS	AC=1;AF=0.5;AN=2;DP=13564;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:321,101:422:99:2392,0,12220:176,145,74,27
chr1	17197595	.	A	C	795.33	PASS	AC=1;AF=0.5;AN=2;DP=16079;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:365,170:535:99:3987,0,9738:196,169,105,65
chr1	17197597	.	G	A	81.13	PASS	AC=1;AF=0.5;AN=2;DP=2296;set=filterInvariant-variant8-filterInvariant15-filterInvariant27-filterInvariant30-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:485,56:541:59:59,0,15142:272,213,31,25
chr1	17197609	.	T	C	884.83	PASS	AC=1;AF=0.5;AN=2;DP=17002;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:388,191:579:99:7047,0,18224:202,186,112,79
chr1	17197615	.	C	A	854.81	PASS	AC=1;AF=0.5;AN=2;DP=17214;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:394,207:601:99:7436,0,18518:204,190,117,90
chr1	17197619	.	A	G	857.66	PASS	AC=1;AF=0.5;AN=2;DP=17252;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:390,212:602:99:7575,0,18076:199,191,117,95
chr1	17197685	.	G	A	1409.07	PASS	AC=1;AF=0.5;AN=2;DP=7036;set=variant5-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant25-variant27-filterInvariant28-variant29-filterInvariant33-variant34-variant36-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:379,91:470:99:1040,0,13334:165,214,45,46
chr1	17197690	.	T	G	718.7	PASS	AC=1;AF=0.5;AN=2;DP=13678;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:240,219:459:99:8372,0,9710:99,141,100,119
chr1	17197694	.	G	A	667.42	PASS	AC=1;AF=0.5;AN=2;DP=13199;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:238,214:452:99:8300,0,9686:97,141,98,116
chr1	17197710	.	G	C	520.04	PASS	AC=1;AF=0.5;AN=2;DP=11298;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:205,187:392:99:7320,0,8643:79,126,77,110
chr1	17197715	.	G	A	541.82	PASS	AC=1;AF=0.5;AN=2;DP=10737;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:200,175:375:99:6923,0,8356:76,124,69,106
chr1	17197725	.	C	G	193.59	PASS	AC=1;AF=0.5;AN=2;DP=8613;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,136:321:99:2821,0,7692:65,120,48,88
chr1	17197758	.	C	G	355.1	PASS	AC=1;AF=0.5;AN=2;DP=5775;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,77:172:99:2781,0,3941:15,80,23,54
chr1	17197764	.	G	A,C	303.47	PASS	AC=1,0;AF=0.402,0.098;AN=2;DP=4789;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:147:99:13,70,23,41
chr1	17197771	.	G	A	331.31	PASS	AC=1;AF=0.5;AN=2;DP=4571;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,54:128:99:2162,0,3364:10,64,18,36
chr1	17197777	.	T	G	214.37	PASS	AC=1;AF=0.5;AN=2;DP=4083;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:65,43:108:99:1844,0,3147:7,58,13,30
chr1	17197779	.	G	A	223.4	PASS	AC=1;AF=0.5;AN=2;DP=3837;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,41:103:99:1601,0,3039:6,56,13,28
chr1	17197798	.	A	G	122.32	PASS	AC=1;AF=0.5;AN=2;DP=2488;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,27:69:99:1130,0,2029:5,37,5,22
chr1	17197801	.	C	G	172.1	PASS	AC=1;AF=0.5;AN=2;DP=1443;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant9-filterInvariant10-filterInvariant11-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant36-variant39-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,10:67:99:158,0,2207:9,48,1,9
chr1	17197817	.	C	A	109.62	PASS	AC=1;AF=0.5;AN=2;DP=1840;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:947,0,1599:4,30,6,19
chr1	17197818	.	C	G	112.63	PASS	AC=1;AF=0.5;AN=2;DP=1821;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:947,0,1599:4,30,6,19
chr1	17198209	.	A	C	115.19	PASS	AC=1;AF=0.5;AN=2;DP=2151;set=variant2-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,13:71:99:359,0,3770:44,14,8,5
chr1	17198211	.	C	A	125.38	PASS	AC=1;AF=0.5;AN=2;DP=2235;set=variant2-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,13:73:99:353,0,3821:45,15,8,5
chr1	17198215	.	A	C	119.39	PASS	AC=1;AF=0.5;AN=2;DP=2393;set=filterInvariant2-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant20-filterInvariant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,15:78:99:400,0,3758:45,18,9,6
chr1	17198381	.	T	G	84.64	PASS	AC=2;AF=0.7;AN=2;DP=51;FS=0;FractionInformativeReads=1;set=filterInvariant13-variant15-variant20-filterInvariant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,16:18:5:483,5,0:1,1,0,16
chr1	17248500	.	A	G	5266.57	PASS	AC=1;AF=0.581;AN=2;DP=14037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:242,256:498:99:6330,0,5702:148,94,157,99
chr1	17248532	.	A	G	16093	PASS	AC=2;AF=1;AN=2;DP=19294;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,645:645:99:18938,1931,0:0,0,354,291
chr1	17249128	.	C	T	4236.34	PASS	AC=1;AF=0.5;AN=2;DP=2730;FractionInformativeReads=1;MQ=60;set=variant11-variant15-filterInvariant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:362,116:478:99:3716,0,18310:208,154,70,46
chr1	17249138	.	C	A	4199.79	PASS	AC=1;AF=0.5;AN=2;DP=3063;FractionInformativeReads=1;MQ=60;set=variant11-variant15-filterInvariant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:401,132:533:99:3962,0,19161:225,176,76,56
chr1	17249395	.	A	G	1910.57	PASS	AC=2;AF=0.739;AN=2;DP=4324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,145:146:99:4753,406,0:1,0,47,98
chr1	17250573	.	T	C	283.05	PASS	AC=2;AF=0.963;AN=2;DP=453;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:615,51,0:0,0,11,6
chr1	17250762	.	G	C	1171.56	PASS	AC=1;AF=0.5;AN=2;DP=3026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,78:137:99:2023,0,1329:35,24,47,31
chr1	17250836	.	A	G	2268.44	PASS	AC=1;AF=0.5;AN=2;DP=4517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,109:181:99:2944,0,1679:42,30,61,48
chr1	17250991	.	T	C	1625.05	PASS	AC=1;AF=0.5;AN=2;DP=2741;MQ=60;set=variant-variant8-variant11-variant15-variant17-variant18-variant21-variant27-variant30-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:116,144:260:99:3524,0,2781:57,59,65,79
chr1	17251055	.	C	T	2247.32	PASS	AC=1;AF=0.581;AN=2;DP=5606;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,92:201:99:2259,0,3406:45,64,43,49
chr1	17251056	.	G	A	719.99	PASS	AC=1;AF=0.5;AN=2;DP=1167;MQ=60;set=variant11-variant15-variant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:154,46:200:99:912,0,5419:68,86,18,28
chr1	17256313	.	G	A	266	PASS	AC=1;AF=0.5;AN=2;DP=1378;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,11:50:99:153,0,1110:27,12,8,3
chr1	17257187	.	G	GTCCGAGGGAGCACTC	298.29	PASS	AC=1;AF=0.5;AN=2;DP=1534;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,16:63:99:525,0,6570:12,35,4,12
chr1	17257840	.	C	G	451.14	PASS	AC=1;AF=0.5;AN=2;DP=698;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:85,23:108:99:369,0,2309:50,35,11,12
chr1	17262942	.	G	T	85.54	PASS	AC=1;AF=0.5;AN=2;DP=673;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:450,0,1329:17,0,12,0
chr1	17262944	.	A	G	124.3	PASS	AC=1;AF=0.5;AN=2;DP=694;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:492,0,1326:18,0,12,0
chr1	17262953	.	A	G	195.86	PASS	AC=1;AF=0.5;AN=2;DP=829;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-filterInvariant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:622,0,1391:20,1,16,1
chr1	17262984	.	G	A	368.88	PASS	AC=1;AF=0.5;AN=2;DP=228;FractionInformativeReads=1;set=variant8-variant15-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:52,17:69:99:279,0,1497:36,16,11,6
chr1	17263462	.	A	G	303.65	PASS	AC=1;AF=0.5;AN=2;DP=268;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant18-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,15:67:99:406,0,1492:14,38,2,13
chr1	17264920	.	C	T	606.24	PASS	AC=1;AF=0.5;AN=2;DP=1876;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,16:69:99:490,0,3003:40,13,12,4
chr1	17264939	.	T	C	608.12	PASS	AC=1;AF=0.5;AN=2;DP=2386;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,22:93:99:590,0,3363:49,22,14,8
chr1	17265171	.	A	G	111.02	PASS	AC=1;AF=0.514;AN=2;DP=2616;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,64:126:99:1631,0,1579:27,35,30,34
chr1	17265327	.	A	G	332.97	PASS	AC=1;AF=0.5;AN=2;DP=6879;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,156:283:99:3728,0,2684:66,61,86,70
chr1	17265366	.	C	G	650.96	PASS	AC=1;AF=0.5;AN=2;DP=7367;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:265,80:345:99:1270,0,6687:134,131,43,37
chr1	17265416	.	G	T	3085.28	PASS	AC=1;AF=0.5;AN=2;DP=1033;MQ=60;set=variant8-variant15-variant21-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:172,76:248:99:1648,0,4712:67,105,24,52
chr1	17265560	.	C	T	264.92	PASS	AC=1;AF=0.5;AN=2;DP=1840;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,15:64:99:254,0,1345:16,33,5,10
chr1	17265601	.	C	T	425.44	PASS	AC=1;AF=0.5;AN=2;DP=214;FractionInformativeReads=1;set=variant8-variant15-variant21-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:29,11:40:99:250,0,909:7,22,4,7
chr1	17265706	.	G	GGGGCGT	99.2	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=0.769;MQ=60;MQRankSum=1.447;QD=7.63;ReadPosRankSum=-0.741;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:136,0,329:3,3,2,2
chr1	17266608	.	TG	T	1638.97	PASS	AC=1;AF=0.5;AN=2;DP=1893;set=variant11-variant15-variant17-variant18-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:264,74:338:99:2308,0,13462:116,148,33,41
chr1	17266616	.	A	G	1644.91	PASS	AC=1;AF=0.5;AN=2;DP=1690;FractionInformativeReads=1;set=variant11-variant15-variant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:267,77:344:99:2309,0,13612:115,152,33,44
chr1	17267302	.	A	G	143.28	PASS	AC=1;AF=0.5;AN=2;DP=2281;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,22:96:99:337,0,1932:41,33,11,11
chr1	17267496	.	C	T	36.23	PASS	AC=1;AF=0.5;AN=2;DP=497;set=filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant29-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:233,0,460:4,13,3,7
chr1	17270498	.	T	G	1211.52	PASS	AC=1;AF=0.5;AN=2;DP=2784;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,69:118:99:1772,0,1115:28,21,40,29
chr1	17270751	.	G	A	948.08	PASS	AC=1;AF=0.542;AN=2;DP=4169;set=variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant25-variant26-variant28-variant30-variant31-variant34-variant35-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:127,131:258:99:3011,0,3144:52,75,62,69
chr1	17270791	.	C	T	586.3	PASS	AC=1;AF=0.5;AN=2;DP=1253;set=variant-variant8-variant15-filterInvariant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:161,53:214:99:1004,0,4364:66,95,20,33
chr1	17270845	.	C	CG	1363.96	PASS	AC=1;AF=0.5;AN=2;DP=2863;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,53:104:99:1820,0,1721:17,34,17,36
chr1	17271989	.	G	A	1203.6	PASS	AC=1;AF=0.5;AN=2;DP=3172;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:475,140:615:99:2010,0,12278:215,260,63,77
chr1	17272037	.	G	A	920.95	PASS	AC=1;AF=0.5;AN=2;DP=2337;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:357,105:462:99:1736,0,9240:139,218,39,66
chr1	17272580	.	T	TC	959.59	PASS	AC=1;AF=0.5;AN=2;DP=1954;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:264,84:348:99:2062,0,8769:132,132,39,45
chr1	17272606	.	ATT	A	1574.8	PASS	AC=1;AF=0.5;AN=2;DP=1851;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:222,76:298:99:2570,0,10387:104,118,38,38
chr1	17272627	.	A	G	2129.12	PASS	AC=1;AF=0.5;AN=2;DP=1954;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:253,87:340:99:3024,0,12638:121,132,45,42
chr1	17272629	.	T	C	2176.93	PASS	AC=1;AF=0.5;AN=2;DP=2000;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:260,88:348:99:3021,0,12461:125,135,46,42
chr1	17272630	.	G	A	2176.96	PASS	AC=1;AF=0.5;AN=2;DP=2015;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:259,89:348:99:2982,0,12422:125,134,47,42
chr1	17272980	.	T	C	869.89	PASS	AC=1;AF=0.5;AN=2;DP=1554;FractionInformativeReads=1;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:202,56:258:99:824,0,5233:93,109,25,31
chr1	17273049	.	G	A	1132.69	PASS	AC=1;AF=0.5;AN=2;DP=878;MQ=60;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:146,33:179:99:891,0,6608:59,87,11,22
chr1	17273058	.	C	T	1035.77	PASS	AC=1;AF=0.5;AN=2;DP=784;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:127,33:160:99:934,0,6236:50,77,12,21
chr1	17273443	.	C	T	611.15	PASS	AC=1;AF=0.5;AN=2;DP=1223;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant15-variant21-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:185,43:228:99:815,0,4938:76,109,10,33
chr1	17273493	.	A	C	1209.71	PASS	AC=1;AF=0.514;AN=2;DP=4121;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,52:148:99:1317,0,2339:39,57,13,39
chr1	17275018	.	C	A	193.58	PASS	AC=1;AF=0.5;AN=2;DP=579;MQ=60;set=variant-variant8-variant15-variant21-variant27-variant30-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:85,28:113:99:540,0,2402:32,53,12,16
chr1	17275054	.	G	C	141.78	PASS	AC=1;AF=0.5;AN=2;DP=1451;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,24:65:99:695,0,1231:13,28,8,16
chr1	17275558	.	C	T	774.78	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=2.03;FractionInformativeReads=1;MQ=56.69;MQRankSum=-1.861;QD=6.51;ReadPosRankSum=1.525;SOR=1.032;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:87,32:119:99:803,0,2841:22,65,6,26
chr1	17281003	.	T	C	1167.54	PASS	AC=2;AF=0.767;AN=2;DP=1712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1416,126,0:0,0,15,27
chr1	17287666	.	G	A	488.26	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant15-variant31	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:516,0,384:6,10,7,11
chr1	17295679	.	T	C	5743.89	PASS	AC=2;AF=0.864;AN=2;DP=7385;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:5801,593,0:0,0,84,114
chr1	17297138	.	G	A	735.56	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0.896;FractionInformativeReads=1;MQ=60;MQRankSum=-2.593;QD=10.36;ReadPosRankSum=0.362;SOR=0.544;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:764,0,885:19,16,18,18
chr1	17297289	.	C	T	328.65	PASS	AC=2;AF=0.768;AN=2;DP=670;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:733,69,0:0,0,7,16
chr1	17299014	.	A	C	1770.26	PASS	AC=2;AF=0.898;AN=2;DP=2468;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:6,58:64:40:1430,40,0:2,4,27,31
chr1	17301448	.	C	T	318.4	PASS	AC=2;AF=0.609;AN=2;DP=281;FractionInformativeReads=1;set=variant-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant20-variant22-variant26-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:648,45,0:0,0,15,0
chr1	17301900	.	AGACAGAACCTGGCACGGGAGCCCG	A	84.87	PASS	AC=2;AF=0.635;AN=2;DP=848;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant20-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:43:458,43,0:0,0,3,8
chr1	17303792	.	C	T	711.02	PASS	AC=2;AF=0.813;AN=2;DP=1366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1601,135,0:0,0,8,37
chr1	17307264	.	TGG	T,TG	2519.71	PASS	AC=2,0;AF=0.352,0.409;AN=2;DP=4243;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:125:99:1,0,72,52
chr1	17312830	.	G	A	2085.51	PASS	AC=1;AF=0.5;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:73,83:156:99:2114,0,1898:37,36,47,36
chr1	17313244	.	CCCCAGGGCTCCT	C	523.92	PASS	AC=2;AF=0.56;AN=2;DP=617;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1021,69,0:0,0,14,9
chr1	17313454	.	G	A	1092.3	PASS	AC=2;AF=0.56;AN=2;DP=2801;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,124:125:99:4428,364,0:0,1,86,38
chr1	17314702	.	C	T	2223.91	PASS	AC=2;AF=0.523;AN=2;DP=3525;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:6251,563,0:0,0,110,78
chr1	17323198	.	A	T	58.47	PASS	AC=2;AF=0.524;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant30-variant31-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:473,36,0:0,0,4,8
chr1	17323449	.	T	C	316.86	PASS	AC=2;AF=0.851;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:400,30,0:0,0,6,4
chr1	17323909	.	C	CGG,CGGGGGGGGGGGGGGGGGGGGGGGGG,CGGGGGGGGGGGGGGGG,CGGGGG,CGGGGGGG	42.28	PASS	AC=0,0,0,2,0;AF=0.2,0.1,0.2,0.2,0.1;AN=2;DP=34;FS=0;MQ=60;set=variant9-variant12-variant13-variant15-variant34	GT:DP:GQ:SB	4/4:2:6:0,0,2,0
chr1	17323919	.	T	G	212.19	PASS	AC=2;AF=0.875;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0;ReadPosRankSum=-1.38;set=variant9-variant13-variant15-variant30	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	17328301	.	T	C	161.25	PASS	AC=2;AF=0.688;AN=2;DP=460;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,6,3
chr1	17331676	.	A	G	506.5	PASS	AC=2;AF=0.65;AN=2;DP=2091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,70:71:99:2145,167,0:1,0,35,35
chr1	17338460	.	G	A	120.02	PASS	AC=2;AF=0.652;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant25-variant26-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:613,60,0:0,0,9,11
chr1	17359676	.	C	A	2925.73	PASS	AC=2;AF=0.943;AN=2;DP=4233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3518,339,0:0,0,41,72
chr1	17380195	.	TCC	TC,T	72.41	PASS	AC=1,0;AF=0.4,0.2;AN=2;DP=40;MQ=60;set=variant3-variant13-variant15-variant20-variant27	GT:DP:GQ:SB	0/1:12:99:4,3,3,2
chr1	17380497	.	G	T	2537.19	PASS	AC=2;AF=0.943;AN=2;DP=4391;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:2966,301,0:0,0,46,55
chr1	17393706	.	AAAG	A	44.51	PASS	AC=1;AF=0.583;AN=2;DP=118;MQ=60;set=variant10-variant11-variant12-variant15-filterInvariant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:86:86,0,251:8,3,3,3
chr1	17393708	.	AG	A	216.15	PASS	AC=1;AF=0.595;AN=2;DP=386;set=variant2-variant4-variant8-variant9-variant15-variant16-variant18-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:106,0,212:6,3,5,3
chr1	17393889	.	A	G	364.6	PASS	AC=2;AF=0.6;AN=2;DP=925;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1690,147,0:0,0,26,23
chr1	17394613	.	T	C	775.28	PASS	AC=2;AF=0.89;AN=2;DP=1726;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2693,181,0:0,0,35,25
chr1	17394623	.	C	T	691.77	PASS	AC=2;AF=0.89;AN=2;DP=1827;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2684,184,0:0,0,35,25
chr1	17394775	.	G	A	584.83	PASS	AC=2;AF=0.6;AN=2;DP=2225;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2524,243,0:0,0,39,42
chr1	17395281	.	T	C	693.24	PASS	AC=2;AF=0.6;AN=2;DP=2391;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3428,320,0:0,0,71,36
chr1	17402347	.	C	T	3192.5	PASS	AC=2;AF=0.955;AN=2;DP=7460;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5207,492,0:0,0,63,102
chr1	17402420	.	A	G	648.1	PASS	AC=2;AF=0.654;AN=2;DP=2111;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2565,237,0:0,0,25,54
chr1	17406015	.	C	T	242.98	PASS	AC=2;AF=0.913;AN=2;DP=537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:465,42,0:0,0,5,9
chr1	17409017	.	G	A	730.68	PASS	AC=2;AF=0.615;AN=2;DP=1341;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,55:56:99:1636,157,0:0,1,37,18
chr1	17409241	.	G	A	809.23	PASS	AC=2;AF=0.635;AN=2;DP=2349;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3167,311,0:0,0,43,61
chr1	17413121	.	A	C	538.53	PASS	AC=2;AF=0.605;AN=2;DP=1370;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant11-variant13-variant15-variant18-variant24-variant25-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2734,270,0:0,0,50,40
chr1	17418883	.	A	G	1443.29	PASS	AC=2;AF=0.92;AN=2;DP=1757;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1386,132,0:0,0,28,16
chr1	17419024	.	G	A	1307.18	PASS	AC=2;AF=0.556;AN=2;DP=1875;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant15-variant25-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3404,350,0:0,0,62,55
chr1	17429774	.	G	T	169.46	PASS	AC=2;AF=0.717;AN=2;DP=410;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant15-variant18-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:812,63,0:0,0,4,17
chr1	17431277	.	G	T	667.04	PASS	AC=1;AF=0.763;AN=2;DP=1020;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:525,0,563:12,11,13,7
chr1	17431618	.	A	G	2723.54	PASS	AC=1;AF=0.805;AN=2;DP=3861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,50:91:99:1276,0,1025:16,25,19,31
chr1	17431681	.	C	A	1451.29	PASS	AC=1;AF=0.756;AN=2;DP=1385;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:516,0,517:4,14,4,13
chr1	17531582	.	G	A	536.16	PASS	AC=1;AF=0.6;AN=2;DP=714;MQ=60;set=variant2-variant6-variant7-variant8-variant11-variant13-variant15-variant18-variant24-variant33-variant35-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:959,0,790:19,8,25,13
chr1	17550225	.	T	C	1548.81	PASS	AC=2;AF=1;AN=2;DP=3621;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3095,296,0:0,0,55,44
chr1	17551034	.	A	T	505.74	PASS	AC=2;AF=0.671;AN=2;DP=517;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:517,42,0:0,0,2,12
chr1	17552875	.	A	G	1476.45	PASS	AC=2;AF=0.893;AN=2;DP=1981;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2097,210,0:0,0,29,41
chr1	17555185	.	C	T	1578.31	PASS	AC=1;AF=0.5;AN=2;DP=145;FS=2.089;FractionInformativeReads=1;MQ=60;MQRankSum=-0.801;QD=10.88;ReadPosRankSum=0.307;SOR=0.91;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:75,70:145:99:1607,0,1913:37,38,31,39
chr1	17555316	.	C	G	859.66	PASS	AC=2;AF=0.638;AN=2;DP=785;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1362,105,0:0,0,12,23
chr1	17555508	.	G	T	919.25	PASS	AC=2;AF=0.69;AN=2;DP=925;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant22-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1118,108,0:0,0,16,20
chr1	17557039	.	T	C	234.96	PASS	AC=1;AF=0.621;AN=2;DP=1222;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:802,0,592:17,4,20,9
chr1	17557133	.	A	C	765.95	PASS	AC=1;AF=0.636;AN=2;DP=3587;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,83:166:99:1918,0,1839:43,40,43,40
chr1	17557310	.	G	A	651.18	PASS	AC=1;AF=0.656;AN=2;DP=1044;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,26:43:99:692,0,460:5,12,9,17
chr1	17572380	.	G	A	908.88	PASS	AC=1;AF=0.5;AN=2;DP=527;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant11-variant15-variant17-variant28-variant29-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:872,0,647:15,18,15,20
chr1	17609448	.	G	T	2001.63	PASS	AC=2;AF=0.661;AN=2;DP=3289;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4036,406,0:0,0,77,59
chr1	17610602	.	A	C	1029.44	PASS	AC=2;AF=0.784;AN=2;DP=1014;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1192,87,0:0,0,23,6
chr1	17635036	.	G	C	965.62	PASS	AC=2;AF=1;AN=2;DP=1266;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1126,105,0:0,0,13,22
chr1	17635072	.	A	G	678.63	PASS	AC=2;AF=0.989;AN=2;DP=1040;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:834,81,0:0,0,9,18
chr1	17635141	.	C	A	516.88	PASS	AC=2;AF=1;AN=2;DP=521;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:361,30,0:0,0,2,8
chr1	17657534	.	G	A	1199.59	PASS	AC=2;AF=0.632;AN=2;DP=3838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3822,373,0:0,0,63,62
chr1	17657616	.	T	C	1083.32	PASS	AC=2;AF=0.635;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3545,356,0:0,0,51,68
chr1	17660499	.	G	C	2846.71	PASS	AC=2;AF=0.635;AN=2;DP=4126;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3439,349,0:0,0,67,50
chr1	17660660	.	G	A	3084.97	PASS	AC=2;AF=0.635;AN=2;DP=3744;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2776,261,0:0,0,35,52
chr1	17660697	.	T	C	2043.46	PASS	AC=2;AF=0.635;AN=2;DP=2763;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1956,183,0:0,0,20,41
chr1	17660802	.	A	ATT,AT	136.82	PASS	AC=2,0;AF=0.7,0.033;AN=2;DP=371;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:6:18:0,0,0,6
chr1	17661128	.	A	C	5226.38	PASS	AC=2;AF=0.697;AN=2;DP=5434;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,148:150:99:4656,399,0:1,1,80,68
chr1	17661659	.	C	CAT	40.2	PASS	AC=2;AF=0.717;AN=2;DP=168;FS=0;MQ=60;set=variant-variant3-variant4-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant34-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:241,21,0:0,0,6,1
chr1	17661805	.	A	G	1428.81	PASS	AC=2;AF=0.718;AN=2;DP=2037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2026,210,0:0,0,37,33
chr1	17662541	.	A	C	668.48	PASS	AC=2;AF=0.703;AN=2;DP=898;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1315,96,0:0,0,29,3
chr1	17662639	.	T	C	2837.79	PASS	AC=2;AF=0.635;AN=2;DP=4830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5174,533,0:0,0,108,70
chr1	17662662	.	T	C	3360.5	PASS	AC=2;AF=0.697;AN=2;DP=5938;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:6485,662,0:0,0,131,90
chr1	17662751	.	C	G	3397.09	PASS	AC=2;AF=0.697;AN=2;DP=6094;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6163,629,0:0,0,93,118
chr1	17662804	.	C	T	2753.24	PASS	AC=2;AF=0.697;AN=2;DP=4092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4265,390,0:0,0,49,81
chr1	17662907	.	A	T	2107.85	PASS	AC=2;AF=0.697;AN=2;DP=2249;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1888,183,0:0,0,26,35
chr1	17664329	.	C	G	66.22	PASS	AC=2;AF=0.909;AN=2;DP=39;FS=0;FractionInformativeReads=1;set=variant3-variant14-variant15-variant18-variant19-variant21-variant24-variant25-variant26-variant32-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:144,15,0:0,0,3,2
chr1	17664770	.	A	G	812.07	PASS	AC=2;AF=0.697;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1423,102,0:0,0,4,30
chr1	17666508	.	C	T	618.19	PASS	AC=2;AF=0.645;AN=2;DP=903;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1051,102,0:0,0,12,22
chr1	17666545	.	GCGCACACACA	GCACACA,GCACA,GCACACACACACACA,GCACACACGCACACACA,GCACACACACACACACA,G	383.24	PASS	AC=2,0,0,0,0,0;AF=0.656,0.016,0.016,0.031,0.016,0.031;AN=2;DP=411;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:19:57:0,0,8,11
chr1	17668270	.	A	G	251.9	PASS	AC=2;AF=0.731;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:747,72,0:0,0,16,8
chr1	17674402	.	C	T	1114.69	PASS	AC=2;AF=0.672;AN=2;DP=2041;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1785,168,0:0,0,36,20
chr1	17674537	.	C	A	2400.38	PASS	AC=2;AF=0.6;AN=2;DP=4335;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,151:153:99:4280,407,0:1,1,78,73
chr1	17681277	.	T	C	327.66	PASS	AC=2;AF=0.868;AN=2;DP=556;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:656,60,0:0,0,6,14
chr1	17683041	.	T	C	2627.58	PASS	AC=2;AF=0.841;AN=2;DP=5356;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,177:179:99:5541,487,0:1,1,65,112
chr1	17683157	.	A	G	456.49	PASS	AC=2;AF=0.833;AN=2;DP=956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1215,102,0:0,0,9,25
chr1	17685174	.	T	C	1764.3	PASS	AC=2;AF=0.859;AN=2;DP=2070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2240,219,0:0,0,48,25
chr1	17685466	.	C	A	1070.58	PASS	AC=2;AF=0.639;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant27-variant29-variant33-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1008,101,0:0,0,14,20
chr1	17689954	.	C	T	641.42	PASS	AC=2;AF=0.659;AN=2;DP=502;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:974,75,0:0,0,22,3
chr1	17698725	.	C	T	1194.92	PASS	AC=2;AF=0.652;AN=2;DP=1369;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2228,213,0:0,0,47,24
chr1	17698891	.	C	T	1466.94	PASS	AC=2;AF=0.676;AN=2;DP=1444;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant27-variant29-variant30-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2835,261,0:0,0,32,55
chr1	17698961	.	T	C	894.75	PASS	AC=2;AF=0.652;AN=2;DP=1088;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,46:47:96:1545,96,0:1,0,18,28
chr1	17699017	.	A	G	353.26	PASS	AC=2;AF=0.639;AN=2;DP=499;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant27-variant29-variant30-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,25:27:32:806,32,0:1,1,11,14
chr1	17699463	.	C	T	373.72	PASS	AC=2;AF=0.652;AN=2;DP=734;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1292,108,0:0,0,29,7
chr1	17699509	.	G	GGTGA	885.96	PASS	AC=2;AF=0.652;AN=2;DP=1369;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3086,208,0:0,0,44,23
chr1	17707601	.	T	C	4839.23	PASS	AC=2;AF=0.656;AN=2;DP=2639;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant19-variant20-variant22-variant27-variant29-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:4922,503,0:0,0,86,82
chr1	17707739	.	T	C	2537.85	PASS	AC=2;AF=0.837;AN=2;DP=3208;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2476,252,0:0,0,31,53
chr1	17707757	.	C	T	2713.4	PASS	AC=2;AF=0.656;AN=2;DP=922;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant19-variant20-variant22-variant27-variant29-variant33-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2955,210,0:0,0,24,46
chr1	17707758	.	G	C	2713.4	PASS	AC=2;AF=0.656;AN=2;DP=904;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant19-variant20-variant22-variant27-variant29-variant33-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2955,210,0:0,0,24,46
chr1	17707798	.	C	T	1094.39	PASS	AC=2;AF=0.767;AN=2;DP=1231;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1058,78,0:0,0,2,24
chr1	17708627	.	G	A	1820.68	PASS	AC=1;AF=0.5;AN=2;DP=625;MQ=60;set=variant-variant5-variant15-variant32-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1522,0,1626:18,42,18,42
chr1	17714638	.	A	G	196.77	PASS	AC=2;AF=0.647;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant27-variant33-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:224,21,0:0,0,5,2
chr1	17714710	.	A	C	761.87	PASS	AC=2;AF=0.609;AN=2;DP=577;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:970,96,0:0,0,18,14
chr1	17714864	.	T	C	1275.48	PASS	AC=1;AF=0.579;AN=2;DP=1779;MQ=60;set=variant-variant4-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant33-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,55:107:99:1358,0,1379:33,19,30,25
chr1	17715081	.	C	T	2459.13	PASS	AC=2;AF=0.609;AN=2;DP=1889;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2814,266,0:0,0,34,55
chr1	17715135	.	T	C	2106.39	PASS	AC=2;AF=0.609;AN=2;DP=1230;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2244,198,0:0,0,29,37
chr1	17715475	.	T	C	1389.06	PASS	AC=2;AF=0.609;AN=2;DP=749;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1121,105,0:0,0,10,25
chr1	17718671	.	AG	A	1033.03	PASS	AC=2;AF=1;AN=2;DP=3104;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2317,196,0:0,0,26,39
chr1	17718750	.	C	T	514.13	PASS	AC=2;AF=0.609;AN=2;DP=657;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,25:26:67:894,67,0:1,0,6,19
chr1	17718756	.	G	C	160.54	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant15-variant32-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:336,0,358:5,9,2,9
chr1	17720439	.	T	C	4316.55	PASS	AC=2;AF=0.774;AN=2;DP=6413;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5445,516,0:0,0,85,87
chr1	17720615	.	A	C	2479.76	PASS	AC=2;AF=0.774;AN=2;DP=4636;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3512,344,0:0,0,47,68
chr1	17720686	.	AG	A	788.69	PASS	AC=2;AF=0.774;AN=2;DP=2769;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2168,207,0:0,0,33,36
chr1	17721388	.	C	T	252.51	PASS	AC=2;AF=0.774;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:309,27,0:0,0,8,1
chr1	17721695	.	GTTT	GTT,G,GT,GTTTT	1277.23	PASS	AC=2,0,0,0;AF=0.326,0.43,0.012,0.012;AN=2;DP=2239;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:60:99:0,0,18,42
chr1	17721707	.	T	G	1347.98	PASS	AC=2;AF=0.614;AN=2;DP=930;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2682,184,0:0,0,18,43
chr1	17725011	.	T	C	52.67	PASS	AC=1;AF=0.737;AN=2;DP=512;MQ=60;set=variant-variant2-filterInvariant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:283,0,131:3,4,7,7
chr1	17725358	.	C	G	515.71	PASS	AC=2;AF=0.75;AN=2;DP=3069;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2646,280,0:0,0,40,54
chr1	17738570	.	AC	A	3424.64	PASS	AC=2;AF=0.619;AN=2;DP=3061;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant29-variant32-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5799,493,0:0,0,92,72
chr1	17739820	.	T	C	1537.04	PASS	AC=2;AF=0.756;AN=2;DP=2208;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2074,192,0:0,0,20,44
chr1	17740357	.	G	A	283.54	PASS	AC=2;AF=0.619;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant29-variant32-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1070,90,0:0,0,6,24
chr1	17765137	.	G	A	1740.55	PASS	AC=1;AF=0.5;AN=2;DP=761;MQ=60;set=variant-variant5-variant15-variant17-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:59,83:142:99:1918,0,1351:24,35,34,49
chr1	17907505	.	A	G	513.75	PASS	AC=2;AF=0.75;AN=2;DP=675;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:900,78,0:0,0,6,20
chr1	17907575	.	C	T	66.22	PASS	AC=2;AF=0.828;AN=2;DP=184;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:402,33,0:0,0,2,9
chr1	17907607	.	C	T	61.77	PASS	AC=2;AF=0.953;AN=2;DP=135;FS=0;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,1,5
chr1	17913714	.	G	A	66.22	PASS	AC=2;AF=0.952;AN=2;DP=308;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:340,27,0:0,0,7,2
chr1	17914122	.	G	A	810.87	PASS	AC=1;AF=0.6;AN=2;DP=495;MQ=60;set=variant7-variant9-variant15-variant31-variant34	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1446,0,1135:24,31,29,33
chr1	17914846	.	C	T	183.13	PASS	AC=1;AF=0.895;AN=2;DP=1097;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:502,0,559:14,6,16,4
chr1	17929972	.	G	T	1421.73	PASS	AC=1;AF=0.55;AN=2;DP=801;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant21-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1730,0,1951:22,18,27,18
chr1	17929990	.	A	C	1606.88	PASS	AC=1;AF=0.55;AN=2;DP=941;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant21-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1805,0,2027:23,21,28,21
chr1	17946193	.	G	C	90.21	PASS	AC=1;AF=0.625;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant21-variant30	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:26:130,0,26:1,1,3,3
chr1	17948305	.	G	GGGCCACAGCAGGTACT	232.36	PASS	AC=1;AF=0.6;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant21-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:381,0,853:10,3,6,1
chr1	17964288	.	C	T	1729.79	PASS	AC=1;AF=0.591;AN=2;DP=1428;set=variant2-variant6-variant7-variant15-variant21-variant22-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,82:163:99:2045,0,2086:50,31,56,26
chr1	17981184	.	A	C	1675.39	PASS	AC=1;AF=0.536;AN=2;DP=2018;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant13-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,98:183:99:2386,0,2124:28,57,43,55
chr1	17982559	.	G	A	988.33	PASS	AC=1;AF=0.536;AN=2;DP=1327;MQ=60;set=variant2-variant6-variant7-variant13-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,67:119:99:1749,0,1246:26,26,21,46
chr1	17983276	.	G	C	710.85	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=4.193;FractionInformativeReads=1;MQ=60;MQRankSum=0.594;QD=13.94;ReadPosRankSum=-0.36;SOR=0.275;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:19,32:51:99:739,0,481:6,13,15,17
chr1	17991052	.	T	C	3978.13	PASS	AC=2;AF=1;AN=2;DP=6329;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5040,509,0:0,0,83,87
chr1	17991196	.	A	G	911.94	PASS	AC=1;AF=0.531;AN=2;DP=828;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:876,0,727:11,21,9,22
chr1	18016162	.	G	A	250.14	PASS	AC=1;AF=0.577;AN=2;DP=190;FractionInformativeReads=1;set=variant2-variant6-variant7-variant15-variant18-variant22-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:290,0,290:7,2,7,3
chr1	18016402	.	A	G	1166.66	PASS	AC=1;AF=0.536;AN=2;DP=1569;MQ=60;set=variant2-variant6-variant7-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,67:127:99:1800,0,1476:24,36,22,45
chr1	18016441	.	T	C	735.43	PASS	AC=1;AF=0.536;AN=2;DP=1106;MQ=60;set=variant2-variant6-variant7-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,53:91:99:1400,0,955:14,24,16,37
chr1	18016491	.	G	A	287.57	PASS	AC=1;AF=0.536;AN=2;DP=458;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:669,0,557:4,15,4,20
chr1	18017522	.	T	C	1960.66	PASS	AC=1;AF=0.849;AN=2;DP=2121;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:638,0,988:23,15,17,10
chr1	18017558	.	A	G	3148.13	PASS	AC=1;AF=0.849;AN=2;DP=3112;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:910,0,1010:26,15,23,18
chr1	18017704	.	C	T	2430.23	PASS	AC=1;AF=0.849;AN=2;DP=2266;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,27:72:99:632,0,1175:19,26,10,17
chr1	18021406	.	T	C	3104.12	PASS	AC=1;AF=0.849;AN=2;DP=6683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,74:197:99:1662,0,3027:60,63,37,37
chr1	18023154	.	A	G	291.22	PASS	AC=1;AF=0.849;AN=2;DP=725;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:224,0,289:7,3,6,3
chr1	18023290	.	C	T	2120.58	PASS	AC=1;AF=0.849;AN=2;DP=3917;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1091,0,1298:24,25,27,16
chr1	18023365	.	C	T	3592.28	PASS	AC=1;AF=0.837;AN=2;DP=6230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,81:159:99:1901,0,1959:38,40,45,36
chr1	18023509	.	T	C	2590.79	PASS	AC=1;AF=0.837;AN=2;DP=4793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,59:119:99:1526,0,1480:27,33,26,33
chr1	18023690	.	A	G	3854.74	PASS	AC=1;AF=0.837;AN=2;DP=6429;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,81:186:99:1993,0,2600:57,48,42,39
chr1	18023997	.	G	GC	2815.45	PASS	AC=1;AF=0.837;AN=2;DP=3725;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,44:103:99:1332,0,1886:30,29,20,24
chr1	18149510	.	G	T	3967.72	PASS	AC=2;AF=0.696;AN=2;DP=3113;MQ=60;set=variant2-variant3-variant5-variant7-variant10-variant14-variant15-variant17-variant19-variant20-variant22-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5093,475,0:0,0,92,67
chr1	18149566	.	C	A	5831.69	PASS	AC=2;AF=0.717;AN=2;DP=5006;MQ=60;set=variant2-variant3-variant5-variant7-variant10-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,233:233:99:7093,695,0:0,0,131,102
chr1	18152582	.	C	T	4549.3	PASS	AC=1;AF=0.571;AN=2;DP=3582;MQ=60;set=variant3-variant7-variant14-variant15-variant19-variant20-variant22-variant24-variant26-variant30-variant31-variant32-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:143,146:289:99:3547,0,3541:69,74,64,82
chr1	18434403	.	C	T	214.39	PASS	AC=1;AF=0.5;AN=2;DP=66;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:511,0,425:11,9,13,7
chr1	18434591	.	C	A	410.58	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:12,28:40:99:629,0,262:7,5,13,15
chr1	18434904	.	A	ATAC	1142.14	PASS	AC=1;AF=0.63;AN=2;DP=606;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant28-variant30-variant31-variant32-variant33-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:492,0,981:6,12,6,7
chr1	18702988	.	T	C	549.5	PASS	AC=2;AF=1;AN=2;DP=632;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:396,27,0:0,0,0,9
chr1	18807339	.	T	C	448.35	PASS	AC=1;AF=0.656;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:781,0,335:10,4,18,6
chr1	18807897	.	C	G	5234.8	PASS	AC=1;AF=0.671;AN=2;DP=9458;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,119:234:99:3026,0,3067:73,42,63,56
chr1	18807953	.	C	A	5525.9	PASS	AC=1;AF=0.6;AN=2;DP=6867;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant14-variant15-variant17-variant18-variant21-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,154:314:99:3926,0,4247:88,72,89,65
chr1	18808292	.	C	A	5091.97	PASS	AC=1;AF=0.671;AN=2;DP=8628;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,121:233:99:2845,0,2759:53,59,56,65
chr1	18808465	.	T	A	2146.46	PASS	AC=1;AF=0.671;AN=2;DP=4305;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,60:115:99:1511,0,1530:23,32,27,33
chr1	18808526	.	A	C	2354.86	PASS	AC=1;AF=0.671;AN=2;DP=4818;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,59:126:99:1569,0,1468:36,31,32,27
chr1	18809896	.	A	T	3924.27	PASS	AC=1;AF=0.634;AN=2;DP=5174;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,59:147:99:2140,0,3946:40,48,24,35
chr1	18809916	.	G	A	3807.75	PASS	AC=1;AF=0.563;AN=2;DP=2758;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant15-variant17-variant18-variant21-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,56:138:99:2092,0,3761:36,46,24,32
chr1	18810344	.	G	T	2284.54	PASS	AC=1;AF=0.622;AN=2;DP=2728;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,28:72:99:700,0,1136:26,18,19,9
chr1	18811668	.	T	C	705.26	PASS	AC=1;AF=0.707;AN=2;DP=1722;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:578,0,945:17,19,12,14
chr1	18812176	.	G	A	632.34	PASS	AC=1;AF=0.625;AN=2;DP=601;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant30-variant31-variant35-variant38-variant39-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:274,0,218:3,6,6,6
chr1	19018558	.	G	A	441.96	PASS	AC=1;AF=0.5;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant15-variant25-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:836,0,617:8,15,9,23
chr1	19027239	.	A	G	1003.67	PASS	AC=1;AF=0.528;AN=2;DP=1862;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant10-variant11-variant14-variant15-variant18-variant22-variant25-variant27-variant28-variant29-variant32-variant34-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,43:106:99:988,0,1539:35,28,24,19
chr1	19029546	.	A	G	396	PASS	AC=1;AF=0.528;AN=2;DP=515;MQ=60;set=variant-variant3-variant4-variant10-variant11-variant14-variant15-variant18-variant22-variant25-variant27-variant28-variant29-variant32-variant34-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:354,0,629:16,6,11,3
chr1	19071153	.	C	CGGAT,CGGATGGAT	127.32	PASS	AC=1,0;AF=0.462,0.25;AN=2;DP=385;set=variant-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant44	GT:DP:GQ:SB	0/1:19:99:9,6,4,0
chr1	19071182	.	A	G	330.35	PASS	AC=1;AF=0.72;AN=2;DP=776;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant28-variant29-variant32-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:381,0,876:16,2,6,5
chr1	19071183	.	A	AATGG,G,AATGGATGG	699.95	PASS	AC=0,1,1;AF=0.172,0.516,0.016;AN=2;DP=998;set=variant6-variant10-variant11-variant12-variant3-variant-variant13-variant14-variant4-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	2/3:30:99:1,0,20,9
chr1	19071187	.	G	GATAA,GATGGATAA,GATGGATGGATGGATGGATAA	221.98	PASS	AC=1,0,0;AF=0.444,0.056,0.028;AN=2;DP=588;set=variant3-variant6-variant9-variant10-variant11-filterInvariant14-variant15-filterInvariant19-variant20-variant21-variant24-filterInvariant25-variant29-variant32-variant35-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:32:99:14,5,8,5
chr1	19071752	.	T	C	339.76	PASS	AC=1;AF=0.797;AN=2;DP=1861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:589,0,692:14,14,10,12
chr1	19072926	.	A	G	269.05	PASS	AC=1;AF=0.75;AN=2;DP=930;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:95:95,0,511:7,9,2,3
chr1	19075225	.	A	G	2525.49	PASS	AC=1;AF=0.792;AN=2;DP=5802;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,72:166:99:1821,0,2347:53,41,42,30
chr1	19166294	.	G	A	812.53	PASS	AC=1;AF=0.522;AN=2;DP=3265;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant28-variant29-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,88:178:99:2269,0,2447:47,43,49,39
chr1	19168478	.	G	A	75.89	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=6.107;FractionInformativeReads=1;MQ=60;MQRankSum=0.127;QD=3.99;ReadPosRankSum=-0.296;SOR=3.033;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:104,0,253:4,8,0,7
chr1	19186129	.	G	C	2378.41	PASS	AC=2;AF=0.869;AN=2;DP=5309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4103,425,0:0,0,72,70
chr1	19186260	.	C	T	659.69	PASS	AC=2;AF=0.625;AN=2;DP=2681;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2819,275,0:0,0,36,56
chr1	19186320	.	G	C	1359.12	PASS	AC=2;AF=0.829;AN=2;DP=2261;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,55:56:99:1766,157,0:0,1,20,35
chr1	19197849	.	T	C	164.94	PASS	AC=2;AF=0.533;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant13-variant15-variant18-variant25-variant26-variant27-variant28-variant35-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:238,24,0:0,0,5,3
chr1	19202770	.	T	C	1545.44	PASS	AC=2;AF=0.977;AN=2;DP=4067;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3266,291,0:0,0,50,47
chr1	19204154	.	G	A	245.42	PASS	AC=2;AF=0.872;AN=2;DP=776;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:657,57,0:0,0,4,15
chr1	19204173	.	A	G	167.92	PASS	AC=2;AF=0.905;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:612,48,0:0,0,4,12
chr1	19208145	.	G	GGGTTGCCT	1086.83	PASS	AC=2;AF=0.989;AN=2;DP=2348;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3509,234,0:0,0,52,24
chr1	19208944	.	A	G	1221.18	PASS	AC=2;AF=0.989;AN=2;DP=1365;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1242,126,0:0,0,26,16
chr1	19209543	.	A	G	2520.27	PASS	AC=2;AF=0.989;AN=2;DP=3586;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3130,302,0:0,0,68,33
chr1	19215834	.	T	C	6975.49	PASS	AC=2;AF=0.943;AN=2;DP=14701;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,473:473:99:13895,1415,0:0,0,261,212
chr1	19232182	.	AGTGT	AGT,A,AGTGTGT	59.26	PASS	AC=0,1,0;AF=0.3,0.2,0.067;AN=2;DP=243;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant15-variant16-variant18-variant22-variant29-variant31-variant37-variant38-variant40-variant43	GT:DP:GQ:SB	0/2:18:99:6,5,3,4
chr1	19238001	.	TTTTATTTATTTA	TTTTATTTATTTATTTA,TTTTA,T	137.32	PASS	AC=0,0,1;AF=0.632,0.184,0.026;AN=2;DP=581;set=variant4-variant5-variant10-variant11-variant12-variant14-variant15-variant17-filterInvariant20-variant24-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant42	GT:DP:GQ:SB	0/3:7:99:0,2,2,3
chr1	19243589	.	A	G	2939.97	PASS	AC=1;AF=0.658;AN=2;DP=5092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,83:162:99:2060,0,2012:27,52,31,52
chr1	19282981	.	A	C	2396.44	PASS	AC=2;AF=0.989;AN=2;DP=2818;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2176,207,0:0,0,29,40
chr1	19403221	.	C	T	2264.3	PASS	AC=1;AF=0.5;AN=2;DP=211;FS=1.714;FractionInformativeReads=1;MQ=60;MQRankSum=-1.25;QD=10.73;ReadPosRankSum=1.295;SOR=0.834;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:116,95:211:99:2293,0,2970:67,49,58,37
chr1	19408294	.	G	GC	1004.19	PASS	AC=1;AF=0.586;AN=2;DP=3324;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,72:118:99:1965,0,1139:13,33,28,44
chr1	19408380	.	T	C	748.75	PASS	AC=1;AF=0.621;AN=2;DP=1703;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:1138,0,1057:14,20,13,27
chr1	19411129	.	A	G	998.15	PASS	AC=1;AF=0.658;AN=2;DP=3675;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,49:114:99:1278,0,1639:32,33,24,25
chr1	19412464	.	C	T	193.45	PASS	AC=1;AF=0.622;AN=2;DP=602;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:386,0,262:7,1,10,0
chr1	19413261	.	T	A	1256.98	PASS	AC=1;AF=0.622;AN=2;DP=6157;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,113:251:99:2268,0,3156:77,61,61,52
chr1	19413420	.	T	G	508.17	PASS	AC=1;AF=0.658;AN=2;DP=1965;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:920,0,1189:8,30,12,23
chr1	19415304	.	C	T	580.63	PASS	AC=1;AF=0.622;AN=2;DP=1606;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:462,0,602:16,5,14,6
chr1	19420392	.	G	A	647.13	PASS	AC=1;AF=0.658;AN=2;DP=2386;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,46:89:99:1125,0,1110:29,14,29,17
chr1	19426199	.	G	A	195.86	PASS	AC=1;AF=0.658;AN=2;DP=1095;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:522,0,545:7,12,7,12
chr1	19433449	.	A	G	141.5	PASS	AC=1;AF=0.658;AN=2;DP=789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:289,0,260:2,6,3,6
chr1	19437185	.	G	T	958.34	PASS	AC=1;AF=0.5;AN=2;DP=605;MQ=60;set=variant3-variant4-variant6-variant8-variant14-variant15-variant24-variant28-variant29-variant34-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:883,0,864:20,9,25,9
chr1	19440107	.	A	G	1615.39	PASS	AC=1;AF=0.658;AN=2;DP=4931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,96:173:99:2439,0,2034:41,36,51,45
chr1	19441212	.	A	G	274.66	PASS	AC=1;AF=0.662;AN=2;DP=665;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:587,0,321:9,0,15,2
chr1	19441693	.	GCACACA	GCACA,GCACACACA,G,GCACACACACA	257.58	PASS	AC=0,1,0,0;AF=0.519,0.037,0.019,0.037;AN=2;DP=536;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant43	GT:DP:GQ:SB	0/2:18:99:3,4,4,7
chr1	19446587	.	C	T	250.11	PASS	AC=1;AF=0.5;AN=2;DP=293;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant14-variant15-variant24-variant28-variant29-variant34-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:442,0,494:13,1,12,1
chr1	19447843	.	C	G	699.95	PASS	AC=1;AF=0.622;AN=2;DP=2550;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:1041,0,1102:21,23,14,21
chr1	19448326	.	C	T	1013.12	PASS	AC=1;AF=0.632;AN=2;DP=3332;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,47:107:99:1125,0,1461:31,29,26,21
chr1	19448608	.	C	G	61.22	PASS	AC=1;AF=0.694;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:78:364,0,78:2,2,2,8
chr1	19470662	.	T	C	988.21	PASS	AC=1;AF=0.5;AN=2;DP=153;FS=0;MQ=60;set=variant8-variant15	GT:AD:DP:GQ:PL:SB	0/1:35,47:82:99:1314,0,931:14,21,19,28
chr1	19470749	.	G	C	93.12	PASS	AC=1;AF=0.662;AN=2;DP=1314;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:618,0,337:5,9,9,15
chr1	19471100	.	C	T	243.45	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.256;QD=18.73;ReadPosRankSum=-0.212;SOR=0.368;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:272,0,182:5,0,7,1
chr1	19486839	.	T	C	147.6	PASS	AC=1;AF=0.658;AN=2;DP=1217;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:297,0,472:2,12,3,7
chr1	19491857	.	T	C	1867.19	PASS	AC=1;AF=0.658;AN=2;DP=4645;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,63:123:99:1380,0,1422:26,34,28,35
chr1	19499560	.	T	C	1797.84	PASS	AC=1;AF=0.5;AN=2;DP=1820;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant14-variant15-variant24-variant28-variant29-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,79:142:99:2247,0,1737:30,33,31,48
chr1	19499835	.	G	C	1315.27	PASS	AC=1;AF=0.658;AN=2;DP=3288;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,64:111:99:1925,0,1284:18,29,24,40
chr1	19500729	.	G	A	725.88	PASS	AC=1;AF=0.658;AN=2;DP=2276;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:781,0,600:16,9,21,11
chr1	19510394	.	A	G	1358.39	PASS	AC=1;AF=0.658;AN=2;DP=5362;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,74:156:99:1759,0,2099:47,35,38,36
chr1	19513570	.	TTA	T	35.63	PASS	AC=1;AF=0.885;AN=2;DP=59;FS=0;MQ=60;set=variant14-variant15-variant17-variant23-variant24-variant28-variant29-variant31-variant33-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:15:173,0,15:1,0,3,3
chr1	19554099	.	T	G	39.17	PASS	AC=1;AF=0.649;AN=2;DP=836;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:381,0,605:6,15,4,11
chr1	19557713	.	G	C	196.42	PASS	AC=1;AF=0.639;AN=2;DP=651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:528,0,333:9,5,13,7
chr1	19563461	.	CAAAAA	CAA,CAAA,CAAAA,CA,CAAAAAA,C	122.48	PASS	AC=0,0,0,1,0,0;AF=0.119,0.095,0.214,0.071,0.048,0.024;AN=2;DP=277;set=variant3-variant4-variant5-variant8-variant10-variant13-variant15-variant17-variant18-variant20-variant22-variant23-variant25-variant27-variant28-variant35-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/4:12:99:3,5,4,0
chr1	19566881	.	C	T	1894.77	PASS	AC=1;AF=0.5;AN=2;DP=1344;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant14-variant15-variant24-variant28-variant29-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1549,0,1518:33,29,31,35
chr1	19578192	.	G	A	2406.15	PASS	AC=1;AF=0.662;AN=2;DP=7750;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,124:252:99:2998,0,3353:66,62,64,60
chr1	19582563	.	G	A	1599.12	PASS	AC=1;AF=0.814;AN=2;DP=6236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,107:191:99:2496,0,1821:40,44,50,57
chr1	19583330	.	G	C	579.31	PASS	AC=1;AF=0.538;AN=2;DP=516;MQ=60;set=variant2-variant5-variant10-variant12-variant13-variant15-variant16-variant23-variant27-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:572,0,565:13,6,12,8
chr1	19583400	.	A	G	1713.52	PASS	AC=2;AF=0.955;AN=2;DP=2679;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2117,210,0:0,0,40,30
chr1	19583734	.	G	A	734.38	PASS	AC=1;AF=0.662;AN=2;DP=2136;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:923,0,690:15,10,13,16
chr1	19585545	.	G	A	185.02	PASS	AC=1;AF=0.814;AN=2;DP=1190;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:643,0,456:4,12,4,16
chr1	19595137	.	C	T	1477.02	PASS	AC=1;AF=0.738;AN=2;DP=3738;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1442,0,1641:41,19,34,24
chr1	19595892	.	G	A	1187.92	PASS	AC=1;AF=0.738;AN=2;DP=3849;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1279,0,1602:20,41,17,35
chr1	19596124	.	C	T	1509.39	PASS	AC=1;AF=0.738;AN=2;DP=1825;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:327,0,747:18,9,9,6
chr1	19596156	.	G	T	2367.83	PASS	AC=1;AF=0.738;AN=2;DP=2769;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:680,0,997:26,13,18,9
chr1	19597420	.	G	T	1538.04	PASS	AC=1;AF=0.536;AN=2;DP=1869;set=variant2-variant5-variant10-variant12-variant13-variant15-variant16-variant17-variant23-variant27-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,92:191:99:2038,0,2512:40,59,42,50
chr1	19609254	.	T	C	1834.13	PASS	AC=1;AF=0.83;AN=2;DP=9083;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:108,116:224:99:2613,0,2389:52,56,58,58
chr1	19611241	.	T	C	692.34	PASS	AC=1;AF=0.818;AN=2;DP=5419;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,81:151:99:2158,0,1564:29,41,30,51
chr1	19638309	.	A	G	2421.34	PASS	AC=2;AF=0.872;AN=2;DP=4583;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4502,414,0:0,0,87,51
chr1	19638883	.	T	C	1822.71	PASS	AC=1;AF=0.756;AN=2;DP=3055;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,45:101:99:1064,0,1269:30,26,23,22
chr1	19650982	.	C	T	139.66	PASS	AC=1;AF=0.571;AN=2;DP=476;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,4:22:79:79,0,649:16,2,4,0
chr1	19651102	.	A	G	745.29	PASS	AC=1;AF=0.571;AN=2;DP=2744;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,61:159:99:1302,0,2407:57,41,36,25
chr1	19651277	.	G	A	245.57	PASS	AC=1;AF=0.571;AN=2;DP=1098;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:789,0,897:7,24,11,21
chr1	19651300	.	T	C	179.09	PASS	AC=1;AF=0.571;AN=2;DP=741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:561,0,706:6,20,9,14
chr1	19651330	.	C	T	154.78	PASS	AC=1;AF=0.571;AN=2;DP=458;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:439,0,500:2,13,4,11
chr1	19652063	.	G	A	1359.77	PASS	AC=1;AF=0.571;AN=2;DP=2607;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,79:139:99:1922,0,1695:30,30,42,37
chr1	19652127	.	AGTT	A	908.95	PASS	AC=1;AF=0.571;AN=2;DP=1362;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,49:67:99:1995,0,618:9,9,18,31
chr1	19652132	.	T	G	1098.78	PASS	AC=1;AF=0.732;AN=2;DP=1493;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant-variant32	GT:AD:DP:GQ:PL:SB	0/1:51,21:72:99:426,0,1996:18,33,9,12
chr1	19652135	.	G	GGT	909.07	PASS	AC=1;AF=0.595;AN=2;DP=1272;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,49:70:99:2002,0,615:9,12,16,33
chr1	19652684	.	G	C	493.98	PASS	AC=1;AF=0.571;AN=2;DP=1026;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:1006,0,769:20,9,23,10
chr1	19653256	.	A	G	588.58	PASS	AC=1;AF=0.571;AN=2;DP=877;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:850,0,882:5,21,1,23
chr1	19675263	.	GC	G	107.49	PASS	AC=1;AF=0.533;AN=2;DP=2414;MQ=60;set=filterInvariant-filterInvariant3-filterInvariant4-variant7-variant8-filterInvariant9-variant10-variant11-variant13-filterInvariant15-variant17-variant20-filterInvariant21-filterInvariant22-variant23-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant31-filterInvariant32-variant34-variant35-variant36-variant38-filterInvariant39-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:77,16:93:94:94,0,2559:39,38,14,2
chr1	19746332	.	A	T	562.59	PASS	AC=1;AF=0.542;AN=2;DP=485;FractionInformativeReads=1;MQ=60;set=variant8-variant13-variant15-variant17-variant22-variant23-variant28-variant29-variant30-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:644,0,486:7,13,7,18
chr1	19775566	.	G	A	803.61	PASS	AC=1;AF=0.542;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant8-variant13-variant15-variant17-variant22-variant23-variant28-variant29-variant30-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:1104,0,831:14,20,17,22
chr1	19775811	.	G	A	238.83	PASS	AC=1;AF=0.756;AN=2;DP=1627;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,34:62:99:828,0,631:11,17,15,19
chr1	19923313	.	T	A	145.99	PASS	AC=1;AF=0.646;AN=2;DP=911;MQ=60;set=variant-variant4-variant8-variant9-variant11-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:593,0,642:15,8,10,12
chr1	19935118	.	T	TA	73.03	PASS	AC=1;AF=0.646;AN=2;DP=1076;MQ=60;set=variant-variant4-variant8-variant9-variant11-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:510,0,543:9,13,7,14
chr1	19948507	.	A	G	491.7	PASS	AC=1;AF=0.588;AN=2;DP=819;MQ=60;set=variant2-variant4-variant7-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant26-variant31-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:733,0,904:23,16,20,11
chr1	19950062	.	T	C	582.99	PASS	AC=1;AF=0.588;AN=2;DP=989;MQ=60;set=variant2-variant4-variant7-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant26-variant31-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:821,0,724:20,11,21,10
chr1	19953118	.	G	T	431.57	PASS	AC=2;AF=0.966;AN=2;DP=718;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:847,69,0:0,0,18,5
chr1	19953165	.	G	A	1010.6	PASS	AC=1;AF=0.611;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant14-variant15-variant17-variant21-variant26-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,33:55:99:874,0,689:18,4,22,11
chr1	19954008	.	A	G	1485.19	PASS	AC=1;AF=0.611;AN=2;DP=419;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant14-variant15-variant17-variant21-variant26-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:605,0,624:13,14,9,13
chr1	19955174	.	CAA	C,CAAA,CAAAA	132.15	PASS	AC=0,0,1;AF=0.25,0.125,0.125;AN=2;DP=39;MQ=60;set=variant4-variant11-variant14-variant15	GT:DP:GQ:SB	0/3:4:16:1,0,2,1
chr1	19956246	.	G	A	6741.18	PASS	AC=1;AF=0.611;AN=2;DP=2406;MQ=60;set=variant10-variant12-variant14-variant15-variant17-variant21-variant26-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:193,170:363:99:3736,0,4561:106,87,92,78
chr1	19956374	.	T	G	2002.12	PASS	AC=2;AF=0.852;AN=2;DP=5792;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5275,494,0:0,0,57,108
chr1	19969611	.	A	G	630.88	PASS	AC=2;AF=0.975;AN=2;DP=561;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:547,54,0:0,0,9,9
chr1	19970853	.	C	A	74.94	PASS	AC=1;AF=0.6;AN=2;DP=94;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant14-variant15-variant17-variant21-variant26-variant28-variant29-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:61:61,0,207:3,5,1,2
chr1	19972586	.	A	G	553.68	PASS	AC=1;AF=0.567;AN=2;DP=651;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant12-variant13-variant14-variant15-variant17-variant21-variant26-variant28-variant29-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:916,0,367:6,11,8,22
chr1	19981451	.	A	G	888.26	PASS	AC=1;AF=0.742;AN=2;DP=1547;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:877,0,865:21,14,21,15
chr1	19981791	.	A	G	2202.11	PASS	AC=2;AF=0.75;AN=2;DP=5107;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5103,500,0:0,0,93,74
chr1	19983863	.	T	TG,TGG	705.39	PASS	AC=0,2;AF=0.038,0.85;AN=2;DP=930;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:21:69:0,0,21,0
chr1	19984100	.	G	GC	1834.48	PASS	AC=2;AF=1;AN=2;DP=3743;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2970,265,0:0,0,48,40
chr1	19984346	.	A	G	669.68	PASS	AC=1;AF=0.559;AN=2;DP=1145;set=variant2-variant3-variant4-variant7-variant12-variant15-variant17-variant19-variant21-variant26-variant29-variant31-variant33-variant34-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,48:89:99:1182,0,951:18,23,21,27
chr1	19984461	.	C	T	921.31	PASS	AC=2;AF=0.878;AN=2;DP=1594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1084,87,0:0,0,10,19
chr1	19992066	.	T	C	1553.15	PASS	AC=1;AF=0.703;AN=2;DP=6157;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,95:229:99:1906,0,3291:70,64,47,48
chr1	19992513	.	C	T	5227.26	PASS	AC=1;AF=0.559;AN=2;DP=9276;set=variant2-variant4-variant7-variant12-variant15-variant17-variant19-variant21-variant26-variant29-variant31-variant33-variant34-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:335,319:654:99:7616,0,8564:150,185,141,178
chr1	20005346	.	A	C	731.55	PASS	AC=1;AF=0.559;AN=2;DP=984;MQ=60;set=variant2-variant4-variant7-variant12-variant15-variant17-variant19-variant21-variant26-variant29-variant31-variant33-variant34-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:1166,0,1133:23,12,25,9
chr1	20008600	.	C	T	102.99	PASS	AC=2;AF=0.841;AN=2;DP=352;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:176,18,0:0,0,4,2
chr1	20008880	.	G	T	440.93	PASS	AC=2;AF=0.817;AN=2;DP=2257;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2371,218,0:0,0,40,33
chr1	20009737	.	G	A	4457.15	PASS	AC=1;AF=0.533;AN=2;DP=5709;MQ=60;set=variant2-variant4-variant7-variant12-variant15-variant19-variant21-variant26-variant29-variant31-variant33-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:242,234:476:99:5750,0,5934:114,128,111,123
chr1	20020993	.	A	G	3419.04	PASS	AC=2;AF=0.854;AN=2;DP=5675;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:5758,468,0:0,0,84,71
chr1	20020994	.	C	T	3419.04	PASS	AC=1;AF=0.703;AN=2;DP=5031;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,68:158:99:1716,0,2280:47,43,39,29
chr1	20027034	.	ATCT	A	543.6	PASS	AC=1;AF=0.629;AN=2;DP=637;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:418,0,471:9,3,9,2
chr1	20027049	.	A	C	196.61	PASS	AC=1;AF=0.576;AN=2;DP=744;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:387,0,454:11,2,11,2
chr1	20027404	.	G	A	934.41	PASS	AC=1;AF=0.58;AN=2;DP=1770;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant20-variant22-variant23-variant24-variant26-variant29-variant31-variant33-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:882,0,768:8,20,11,22
chr1	20027423	.	T	G	682.08	PASS	AC=1;AF=0.6;AN=2;DP=1763;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:867,0,618:6,17,9,23
chr1	20073146	.	G	A	371.33	PASS	AC=1;AF=0.536;AN=2;DP=194;MQ=60;set=variant3-variant4-variant8-variant9-variant11-variant15-variant16-variant20-variant21-variant24-variant29-variant31-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:189,0,230:0,6,0,5
chr1	20082100	.	C	T	1302.89	PASS	AC=1;AF=0.5;AN=2;DP=171;MQ=60;set=variant15-variant21	GT:AD:DP:GQ:PL:SB	0/1:50,59:109:99:1331,0,1227:29,21,39,20
chr1	20097370	.	T	C	662.04	PASS	AC=1;AF=0.6;AN=2;DP=578;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:159,0,520:7,10,3,4
chr1	20097941	.	G	T	1981.68	PASS	AC=1;AF=0.643;AN=2;DP=1966;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,33:82:99:782,0,1340:17,32,12,21
chr1	20107018	.	G	A	2134.85	PASS	AC=1;AF=0.536;AN=2;DP=3041;MQ=60;set=variant2-variant3-variant4-variant8-variant9-variant11-variant15-variant16-variant20-variant21-variant24-variant29-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:114,99:213:99:2356,0,2929:64,50,49,50
chr1	20140389	.	A	T	314.84	PASS	AC=1;AF=0.5;AN=2;DP=178;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant12-variant15-variant23-variant26-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:298,0,386:9,1,6,2
chr1	20140622	.	T	C	1661.55	PASS	AC=1;AF=0.5;AN=2;DP=741;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant12-variant15-variant20-variant26	GT:AD:DP:GQ:PL:SB	0/1:73,57:130:99:1407,0,2078:38,35,30,27
chr1	20141882	.	CA	C	75.17	PASS	AC=2;AF=1;AN=2;DP=366;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:557,45,0:0,0,7,8
chr1	20216860	.	G	A	2177.96	PASS	AC=1;AF=0.716;AN=2;DP=2337;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:982,0,1110:29,16,27,15
chr1	20224152	.	G	A	648.57	PASS	AC=1;AF=0.5;AN=2;DP=759;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant15-variant16-variant18-variant23-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,51:96:99:1383,0,1154:18,27,18,33
chr1	20233226	.	A	G	334.09	PASS	AC=1;AF=0.5;AN=2;DP=204;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant15-variant16-variant18-variant23-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:301,0,326:3,9,1,8
chr1	20236027	.	A	G	809.13	PASS	AC=1;AF=0.5;AN=2;DP=569;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant15-variant16-variant18-variant23-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,44:70:99:1186,0,597:17,9,26,18
chr1	20236731	.	A	G	837.42	PASS	AC=1;AF=0.548;AN=2;DP=1406;MQ=60;set=variant-variant2-variant4-variant9-variant12-variant15-variant16-variant17-variant18-variant22-variant23-variant25-variant26-variant28-variant33-variant34-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1105,0,1056:20,20,16,22
chr1	20237881	.	AT	ATT,ATTT,A	318.35	PASS	AC=1,0,0;AF=0.257,0.189,0.149;AN=2;DP=3760;set=variant2-filterInvariant4-variant5-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-filterInvariant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:78:99:4,43,12,19
chr1	20238343	.	A	G	1416.26	PASS	AC=1;AF=0.73;AN=2;DP=2224;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:611,0,956:16,20,13,13
chr1	20238373	.	G	A	485.81	PASS	AC=1;AF=0.5;AN=2;DP=568;MQ=60;set=variant-variant2-variant4-variant15-variant16-variant18-variant23-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:664,0,993:19,19,13,17
chr1	20238576	.	A	AT	842.85	PASS	AC=1;AF=0.5;AN=2;DP=675;MQ=60;set=variant-variant2-variant4-variant15-variant16-variant18-variant23-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,40:87:99:1081,0,1378:26,21,21,19
chr1	20301927	.	A	T	249.26	PASS	AC=1;AF=0.607;AN=2;DP=479;MQ=60;set=variant6-variant7-variant14-variant15-variant18-variant22-variant29-variant30-variant31-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,28:44:99:685,0,387:11,5,17,11
chr1	20301964	.	G	A	1069.51	PASS	AC=1;AF=0.5;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant15-variant27-variant28-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,24:60:99:561,0,847:19,17,14,10
chr1	20304962	.	C	G	985.56	PASS	AC=1;AF=0.5;AN=2;DP=655;MQ=60;set=variant8-variant10-variant15-variant24-variant27-variant28	GT:AD:DP:GQ:PL:SB	0/1:70,41:111:99:897,0,1892:35,35,19,22
chr1	20305065	.	C	T	2739.19	PASS	AC=2;AF=0.817;AN=2;DP=3602;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3335,306,0:0,0,58,44
chr1	20305466	.	GCACACA	G,GCACA,GCACGCACACACACACACA,GCACGCACACACACACACACACA,GCA,GCACACACA	679.96	PASS	AC=0,2,0,0,0,0;AF=0.114,0.705,0.034,0.023,0.045,0.011;AN=2;DP=988;set=Intersection	GT:DP:GQ:SB	2/2:5:14:0,0,2,3
chr1	20395401	.	C	A	1378.59	PASS	AC=1;AF=0.691;AN=2;DP=1569;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:695,0,967:24,10,20,8
chr1	20411234	.	T	A	269.86	PASS	AC=1;AF=0.604;AN=2;DP=794;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:454,0,830:21,9,12,5
chr1	20411332	.	C	T	900.53	PASS	AC=1;AF=0.609;AN=2;DP=2518;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:74,55:129:99:1210,0,1929:41,33,30,25
chr1	20438701	.	C	T	111.22	PASS	AC=1;AF=0.63;AN=2;DP=186;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:154,0,200:5,1,5,0
chr1	20439313	.	C	G	1061.3	PASS	AC=1;AF=0.7;AN=2;DP=4616;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,41:131:99:889,0,2334:43,47,20,21
chr1	20439522	.	T	A	826.76	PASS	AC=1;AF=0.7;AN=2;DP=2917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,22:68:99:487,0,1362:23,23,8,14
chr1	20442054	.	T	C	1663.2	PASS	AC=1;AF=0.782;AN=2;DP=4351;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,72:141:99:1867,0,1681:27,42,28,44
chr1	20442583	.	A	G	209.18	PASS	AC=1;AF=0.5;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant18-variant23-variant39	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,576:6,1,6,1
chr1	20442587	.	T	C	94.89	PASS	AC=1;AF=0.611;AN=2;DP=233;MQ=60;set=variant4-variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant23-variant26-variant27-variant30-variant35-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,576:6,1,6,1
chr1	20442780	.	G	A	2164.49	PASS	AC=1;AF=0.5;AN=2;DP=193;FS=3.254;FractionInformativeReads=1;MQ=60;MQRankSum=0.13;QD=11.21;ReadPosRankSum=4.107;SOR=0.654;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:95,98:193:99:2193,0,2258:51,44,47,51
chr1	20446170	.	GT	G	328.34	PASS	AC=2;AF=1;AN=2;DP=650;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:617,57,0:0,0,4,15
chr1	20474907	.	T	C	641.52	PASS	AC=1;AF=0.643;AN=2;DP=365;MQ=60;set=variant2-variant7-variant8-variant15-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:840,0,829:9,19,10,18
chr1	20487743	.	C	T	262.21	PASS	AC=2;AF=0.781;AN=2;DP=348;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:141,15,0:0,0,3,2
chr1	20488689	.	T	C	30.19	PASS	AC=2;AF=0.779;AN=2;DP=783;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:758,78,0:0,0,17,9
chr1	20488701	.	C	G	698.06	PASS	AC=1;AF=0.542;AN=2;DP=334;FractionInformativeReads=1;set=variant2-variant7-variant8-variant15-variant25-variant28-variant29-variant30-variant32-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:279,0,426:11,6,8,4
chr1	20489393	.	C	G	211.34	PASS	AC=1;AF=0.625;AN=2;DP=808;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant21-variant23-variant24-variant32-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:726,0,593:13,12,14,14
chr1	20490518	.	T	C	923.22	PASS	AC=2;AF=0.786;AN=2;DP=5529;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6326,635,0:0,0,104,108
chr1	20499168	.	T	C	1304.31	PASS	AC=1;AF=0.605;AN=2;DP=909;MQ=60;set=variant2-variant5-variant7-variant8-variant12-variant15-variant16-variant20-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:964,0,779:17,16,25,11
chr1	20501442	.	T	C	962.83	PASS	AC=2;AF=0.694;AN=2;DP=2826;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2786,264,0:0,0,47,41
chr1	20503710	.	G	A	300.08	PASS	AC=2;AF=0.828;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:475,51,0:0,0,10,7
chr1	20512652	.	A	C	2312.64	PASS	AC=2;AF=1;AN=2;DP=4195;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:2860,323,0:0,0,57,51
chr1	20617669	.	GTA	G	155.46	PASS	AC=1;AF=0.5;AN=2;DP=109;MQ=60;set=variant11-variant12-variant15-variant19-variant25-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:245,0,437:4,8,2,5
chr1	20637374	.	T	C	452.09	PASS	AC=1;AF=0.8;AN=2;DP=1720;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:843,0,898:3,24,7,23
chr1	20639345	.	C	A	656.09	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:50,40:90:99:922,0,1125:27,23,20,20
chr1	20645086	.	T	A	1667.62	PASS	AC=1;AF=0.563;AN=2;DP=1607;MQ=60;set=variant2-variant15-variant16-variant19-variant23-variant26-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:120,95:215:99:2307,0,2789:57,63,37,58
chr1	20808794	.	TC	T	140.92	PASS	AC=1;AF=0.6;AN=2;DP=46;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant25-variant27-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:118,0,118:2,2,2,2
chr1	20809349	.	CGTGT	CGTGTGT,CGT,CGTGTGTGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGTGT,C	3059.03	PASS	AC=1,0,0,0,0,0,0;AF=0.318,0.136,0.091,0.023,0.148,0.045,0.011;AN=2;DP=8181;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:159:99:15,17,61,66
chr1	20826243	.	C	T	987.05	PASS	AC=1;AF=0.5;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant17-variant25-variant27-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:970,0,630:13,17,20,19
chr1	20826782	.	CCT	C	1367.07	PASS	AC=1;AF=0.615;AN=2;DP=1925;MQ=60;set=variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant17-variant19-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,52:99:99:2001,0,1760:24,23,29,23
chr1	20826910	.	G	A	1367.8	PASS	AC=1;AF=0.615;AN=2;DP=2607;MQ=60;set=variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant17-variant19-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,65:127:99:1585,0,1604:31,31,33,32
chr1	20827031	.	A	G	1275.01	PASS	AC=1;AF=0.565;AN=2;DP=1798;MQ=60;set=variant3-variant6-variant9-variant10-variant11-variant15-variant17-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1254,0,1202:24,21,21,27
chr1	20915418	.	C	G	1064.63	PASS	AC=1;AF=0.729;AN=2;DP=1234;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant33-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,35:87:99:801,0,1324:28,24,20,15
chr1	20915441	.	G	A	462.12	PASS	AC=1;AF=0.5;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant15-variant17-variant19-variant22-variant28-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,40:97:99:953,0,1563:30,27,23,17
chr1	20915589	.	TC	T	1389.1	PASS	AC=1;AF=0.729;AN=2;DP=2554;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1268,0,1264:21,22,26,17
chr1	20931601	.	T	TATTC	1785.35	PASS	AC=1;AF=0.6;AN=2;DP=498;MQ=60;set=variant2-variant9-variant10-variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:1611,0,2002:13,28,17,25
chr1	20931774	.	A	G	367.46	PASS	AC=2;AF=0.654;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:32:323,32,0:0,0,6,5
chr1	20940258	.	T	A	4242.68	PASS	AC=2;AF=1;AN=2;DP=4635;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4069,413,0:0,0,81,58
chr1	20940463	.	T	C	893.37	PASS	AC=1;AF=0.538;AN=2;DP=498;MQ=60;set=variant6-variant9-variant15-variant17-variant20-variant22-variant24-variant27-variant28-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:795,0,686:7,19,5,19
chr1	20944889	.	G	A	598.01	PASS	AC=1;AF=0.575;AN=2;DP=1899;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,56:120:99:2081,0,4941:37,27,27,29
chr1	20944909	.	G	A	536.13	PASS	AC=1;AF=0.575;AN=2;DP=2110;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,65:138:99:2617,0,5432:42,31,33,32
chr1	20944922	.	C	T	553.91	PASS	AC=1;AF=0.575;AN=2;DP=2197;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,71:147:99:2620,0,5318:43,33,33,38
chr1	20945055	.	C	T	709.4	PASS	AC=1;AF=0.575;AN=2;DP=2024;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,58:104:99:1468,0,1101:20,26,31,27
chr1	20945252	.	G	GC	244.49	PASS	AC=1;AF=0.575;AN=2;DP=1226;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:917,0,731:14,16,14,21
chr1	20945452	.	A	G	323.57	PASS	AC=1;AF=0.575;AN=2;DP=542;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:204,0,385:7,7,4,5
chr1	20964328	.	A	G	83.95	PASS	AC=2;AF=0.886;AN=2;DP=1103;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:972,75,0:0,0,19,6
chr1	20964789	.	A	T	84.14	PASS	AC=2;AF=0.633;AN=2;DP=218;MQ=60;set=variant2-variant6-variant9-variant15-variant17-variant20-variant21-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:776,66,0:0,0,6,16
chr1	20971980	.	CA	CAA,CAAAA,CAAA,CAAAAA,C	116.03	PASS	AC=1,1,0,0,0;AF=0.269,0.103,0.205,0.026,0.013;AN=2;DP=1436;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:25:75:2,2,12,9
chr1	20972048	.	G	A	656.75	PASS	AC=2;AF=0.886;AN=2;DP=3429;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2536,251,0:0,0,45,39
chr1	20976759	.	C	T	85.73	PASS	AC=2;AF=0.886;AN=2;DP=878;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:861,86,0:0,0,19,10
chr1	20977000	.	A	C	915.87	PASS	AC=2;AF=0.618;AN=2;DP=1591;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant9-variant10-variant15-variant17-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,112:114:99:3612,291,0:1,1,66,46
chr1	20977221	.	A	T	983.42	PASS	AC=2;AF=0.886;AN=2;DP=3264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3578,320,0:0,0,42,65
chr1	20977365	.	C	G	608.8	PASS	AC=2;AF=0.886;AN=2;DP=2815;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2671,237,0:0,0,44,35
chr1	20977380	.	T	C	527.12	PASS	AC=2;AF=0.618;AN=2;DP=1126;MQ=60;set=variant2-variant6-variant9-variant10-variant15-variant17-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2639,236,0:0,0,45,34
chr1	20977748	.	T	G	5221.41	PASS	AC=2;AF=0.618;AN=2;DP=7069;MQ=60;set=variant2-variant6-variant9-variant10-variant15-variant17-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,560:562:99:17861,1636,0:1,1,339,221
chr1	20977856	.	T	C	7866.06	PASS	AC=2;AF=0.618;AN=2;DP=11685;MQ=60;set=variant2-variant6-variant9-variant10-variant15-variant17-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,860:860:99:26757,2576,0:0,0,415,445
chr1	20977907	.	A	AAGAG	10756.3	PASS	AC=1;AF=0.583;AN=2;DP=3863;MQ=60;set=variant2-variant9-variant10-variant15-variant21-variant30	GT:AD:DP:GQ:PL:SB	0/1:368,391:759:99:15272,0,14208:159,209,172,219
chr1	20978024	.	C	A	2798.45	PASS	AC=2;AF=0.618;AN=2;DP=3360;MQ=60;set=variant2-variant6-variant9-variant10-variant15-variant17-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,260:260:99:8903,777,0:0,0,65,195
chr1	20978832	.	T	C	954.21	PASS	AC=2;AF=0.886;AN=2;DP=5274;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4190,435,0:0,0,79,66
chr1	20979573	.	C	T	481.51	PASS	AC=1;AF=0.538;AN=2;DP=210;set=variant6-variant9-variant15-variant17-variant20-variant22-variant24-variant27-variant28-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:214,0,349:2,9,0,7
chr1	20979580	.	T	G	122.24	PASS	AC=2;AF=0.618;AN=2;DP=229;FractionInformativeReads=1;set=variant2-variant6-variant9-variant10-variant15-variant17-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:497,39,0:0,0,2,11
chr1	20981806	.	G	A	852.03	PASS	AC=2;AF=1;AN=2;DP=933;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:890,78,0:0,0,20,6
chr1	20982151	.	G	A	1880.04	PASS	AC=1;AF=0.538;AN=2;DP=2291;MQ=60;set=variant6-variant9-variant15-variant17-variant20-variant22-variant24-variant27-variant28-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:128,119:247:99:2836,0,3123:55,73,58,61
chr1	20982405	.	G	A	360.02	PASS	AC=1;AF=0.538;AN=2;DP=314;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant15-variant17-variant20-variant22-variant24-variant27-variant28-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:334,0,535:11,8,8,2
chr1	20982631	.	G	A	391.32	PASS	AC=1;AF=0.716;AN=2;DP=3749;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,45:98:99:1030,0,1262:26,27,22,23
chr1	20987873	.	G	C	5606.94	PASS	AC=2;AF=1;AN=2;DP=10130;FS=0;MQ=60;MQRankSum=-0.997;ReadPosRankSum=1.147;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7559,740,0:0,0,128,119
chr1	20990905	.	G	A	826.67	PASS	AC=1;AF=0.5;AN=2;DP=733;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant15-variant17-variant20-variant22-variant24-variant27-variant28-variant34-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,39:60:99:1036,0,467:11,10,19,20
chr1	20992819	.	G	C	920.03	PASS	AC=1;AF=0.826;AN=2;DP=4997;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,73:149:99:1839,0,1960:28,48,26,47
chr1	20992933	.	G	C	385.68	PASS	AC=2;AF=1;AN=2;DP=864;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1183,90,0:0,0,4,26
chr1	20997072	.	A	G	1170.11	PASS	AC=1;AF=0.5;AN=2;DP=655;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant22-variant23-variant30-variant40	GT:AD:DP:GQ:PL:SB	0/1:55,43:98:99:1087,0,1465:21,34,15,28
chr1	21009459	.	C	T	1120.14	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=5.353;FractionInformativeReads=1;MQ=60;MQRankSum=-0.299;QD=13.83;ReadPosRankSum=0.204;SOR=1.511;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:1148,0,1298:13,32,6,30
chr1	21024901	.	C	T	1131.1	PASS	AC=2;AF=0.737;AN=2;DP=5132;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3804,369,0:0,0,68,56
chr1	21030902	.	G	T	450.26	PASS	AC=2;AF=0.672;AN=2;DP=2466;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3158,281,0:0,0,66,28
chr1	21040079	.	C	A	596.88	PASS	AC=2;AF=0.75;AN=2;DP=4400;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,124:126:99:3643,356,0:0,2,53,71
chr1	21042300	.	C	G	251.5	PASS	AC=2;AF=0.757;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:853,72,0:0,0,6,18
chr1	21043790	.	T	C	511.53	PASS	AC=2;AF=0.764;AN=2;DP=1816;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1951,189,0:0,0,38,25
chr1	21043913	.	T	C	3066.23	PASS	AC=2;AF=0.764;AN=2;DP=8355;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,264:264:99:8263,790,0:0,0,169,95
chr1	21043926	.	T	C	3559.31	PASS	AC=2;AF=0.763;AN=2;DP=10695;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,334:334:99:10012,1000,0:0,0,203,131
chr1	21044161	.	A	G	2844.55	PASS	AC=2;AF=0.75;AN=2;DP=7725;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,252:252:99:8068,756,0:0,0,88,164
chr1	21044219	.	A	C	1205.19	PASS	AC=2;AF=0.863;AN=2;DP=4095;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3759,365,0:0,0,42,80
chr1	21044362	.	CG	C	373.97	PASS	AC=2;AF=1;AN=2;DP=497;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:112,9,0:0,0,1,2
chr1	21047092	.	A	T	968.13	PASS	AC=1;AF=0.743;AN=2;DP=3366;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,59:113:99:1583,0,1391:28,26,34,25
chr1	21047616	.	G	A	1221.15	PASS	AC=1;AF=0.661;AN=2;DP=3710;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,69:143:99:1641,0,1797:37,37,27,42
chr1	21047725	.	A	G	995.55	PASS	AC=1;AF=0.73;AN=2;DP=3101;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,28:73:99:880,0,1325:16,29,9,19
chr1	21050958	.	C	T	1660.19	PASS	AC=1;AF=0.808;AN=2;DP=7150;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,113:228:99:2988,0,2966:48,67,49,64
chr1	21054726	.	A	G	389.38	PASS	AC=1;AF=0.729;AN=2;DP=729;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:238,0,126:2,4,4,5
chr1	21058655	.	G	A	49.73	PASS	AC=1;AF=0.705;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,197:2,3,1,1
chr1	21069129	.	A	C	465.51	PASS	AC=1;AF=0.683;AN=2;DP=715;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:526,0,603:17,2,15,2
chr1	21081930	.	T	C	108.2	PASS	AC=1;AF=0.5;AN=2;DP=27;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:136,0,287:5,6,2,3
chr1	21091861	.	G	T	1633.48	PASS	AC=1;AF=0.673;AN=2;DP=2786;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,77:139:99:1957,0,1606:38,24,49,28
chr1	21099846	.	A	G	228.49	PASS	AC=1;AF=0.694;AN=2;DP=550;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:254,0,300:8,3,7,0
chr1	21100836	.	A	AACAC,AAC,AACACAC	1737.3	PASS	AC=1,0,0;AF=0.607,0.018,0.018;AN=2;DP=2928;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:112:99:47,29,26,10
chr1	21101163	.	A	G	1018.79	PASS	AC=2;AF=1;AN=2;DP=1235;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.208;ReadPosRankSum=1.595;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:879,84,0:0,0,9,19
chr1	21102502	.	CAAAA	CAAAAA,CAA,CAAA,CAAAAAAA,C,CAAAAAA	41.96	PASS	AC=1,0,0,0,0,0;AF=0.188,0.031,0.219,0.063,0.031,0.031;AN=2;DP=209;set=variant-variant3-variant6-variant7-variant13-variant14-variant15-variant19-variant25-filterInvariant27-variant31-variant35-variant36-variant38-variant40-variant44	GT:DP:GQ:SB	0/1:12:58:4,3,3,2
chr1	21106204	.	GA	GAA,G,GAAA,GAAAA	228.49	PASS	AC=0,0,1,0;AF=0.271,0.083,0.271,0.021;AN=2;DP=407;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant15-variant17-variant20-variant22-variant24-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/3:18:99:8,3,6,1
chr1	21133496	.	CT	C,CTT	451.55	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=804;MQ=60;set=variant2-filterInvariant5-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant12-variant15-filterInvariant34-variant35-variant37-variant38-variant44	GT:DP:GQ:SB	0/2:54:99:8,19,9,18
chr1	21167404	.	A	G	2430.39	PASS	AC=2;AF=1;AN=2;DP=3309;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.887;ReadPosRankSum=1.518;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3054,303,0:0,0,55,46
chr1	21175855	.	C	A	1305.15	PASS	AC=2;AF=0.989;AN=2;DP=1135;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1086,99,0:0,0,24,9
chr1	21179969	.	G	A	996.08	PASS	AC=2;AF=0.989;AN=2;DP=1855;FS=0;MQ=60;MQRankSum=1.25;ReadPosRankSum=1.031;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1575,161,0:0,0,31,23
chr1	21180181	.	C	T	404.05	PASS	AC=1;AF=0.707;AN=2;DP=1191;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:694,0,439:9,9,8,16
chr1	21180250	.	G	A	172.12	PASS	AC=1;AF=0.7;AN=2;DP=481;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:258,0,219:5,5,1,8
chr1	21188703	.	A	T	1079.77	PASS	AC=1;AF=0.707;AN=2;DP=2827;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,49:117:99:902,0,1559:34,34,23,26
chr1	21188871	.	C	A	211.93	PASS	AC=1;AF=0.679;AN=2;DP=609;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,25:36:99:686,0,303:2,9,8,17
chr1	21191416	.	T	G	381.83	PASS	AC=1;AF=0.727;AN=2;DP=1052;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,26:38:99:681,0,303:6,6,14,12
chr1	21191430	.	A	G	383.05	PASS	AC=1;AF=0.692;AN=2;DP=757;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,25:33:99:713,0,123:5,3,12,13
chr1	21219050	.	C	T	681.45	PASS	AC=1;AF=0.672;AN=2;DP=1447;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:823,0,978:26,16,22,18
chr1	21220375	.	T	G	43.74	PASS	AC=1;AF=0.726;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:361,0,174:2,4,3,9
chr1	21226504	.	T	C	88.43	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:117,0,370:2,9,1,3
chr1	21295864	.	C	T	398.36	PASS	AC=1;AF=0.7;AN=2;DP=960;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:783,0,613:17,3,22,8
chr1	21307743	.	AT	A,ATT	128.4	PASS	AC=1,0;AF=0.469,0.031;AN=2;DP=1055;set=filterInvariant4-filterInvariant9-filterInvariant15-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant25-variant29-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant39-filterInvariant40-filterInvariant43	GT:DP:GQ:SB	0/1:62:99:14,37,2,9
chr1	21315574	.	GGGAGA	GGGAGAGGAGAGGAGA,GGGAGAGGAGA,G,GGGAGAGGAGAGGAGAGGAGA	156.3	PASS	AC=1,0,0,0;AF=0.537,0.093,0.074,0.037;AN=2;DP=247;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant27-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:13:99:6,0,7,0
chr1	21325360	.	C	A	573.79	PASS	AC=1;AF=0.7;AN=2;DP=1485;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,30:81:99:682,0,1174:29,22,18,12
chr1	21327637	.	C	T	3232.64	PASS	AC=2;AF=1;AN=2;DP=5018;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,145:146:99:4474,427,0:1,0,79,66
chr1	21377314	.	C	T	945.78	PASS	AC=2;AF=0.989;AN=2;DP=1148;MQ=60;MQRankSum=0.106;ReadPosRankSum=-1.936;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1227,116,0:0,0,28,11
chr1	21494634	.	C	T	519.84	PASS	AC=1;AF=0.7;AN=2;DP=614;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:314,0,564:5,14,2,8
chr1	21501095	.	C	A	84.57	PASS	AC=1;AF=0.683;AN=2;DP=737;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:446,0,332:9,5,12,7
chr1	21502724	.	TGCCGCCGCC	TGCCGCC,TGCCGCCGCCGCCGCC,T,TGCCGCCGCCGCC	1155.36	PASS	AC=1,0,0,0;AF=0.545,0.076,0.03,0.015;AN=2;DP=4705;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:159:99:37,42,43,37
chr1	21554319	.	A	G	481.36	PASS	AC=2;AF=0.977;AN=2;DP=1230;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:801,69,0:0,0,18,5
chr1	21751068	.	C	G	65.05	PASS	AC=2;AF=0.977;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQRankSum=-0.731;ReadPosRankSum=-0.731;set=filterInvariant-filterInvariant3-variant7-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant15-filterInvariant16-variant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant30-variant31-filterInvariant36-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:141,12,0:0,0,2,2
chr1	21751142	.	A	G	1146.87	PASS	AC=1;AF=0.547;AN=2;DP=2856;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant8-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:26,55:81:99:1482,0,515:20,6,44,11
chr1	21751214	.	G	A	3577.5	PASS	AC=1;AF=0.535;AN=2;DP=9497;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:94,161:255:99:3847,0,1596:50,44,102,59
chr1	21751325	.	G	C	2306.01	PASS	AC=1;AF=0.5;AN=2;DP=1131;FractionInformativeReads=1;set=variant5-variant15-variant21-variant28-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:122,80:202:99:1848,0,2857:41,81,35,45
chr1	21752682	.	G	A	422.93	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3086;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,29:89:99:508,0,1292:34,26,18,11
chr1	21752766	.	A	G	394.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4582;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,25:88:99:378,0,1387:25,38,11,14
chr1	21752782	.	T	G	314.51	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4216;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:58,21:79:99:324,0,1355:21,37,8,13
chr1	21752830	.	C	T	165.85	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1127;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:229,0,410:7,11,2,9
chr1	21752882	.	A	G	39.3	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=4;FS=0;FractionInformativeReads=1;SOR=2.303;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:66,6,0:0,0,2,0
chr1	21753562	.	A	C	190.1	PASS	AC=2;AF=0.824;AN=2;DP=1102;set=filterInvariant-variant2-variant4-variant5-filterInvariant6-variant7-variant10-variant11-variant12-variant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant24-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:679,66,0:0,0,22,0
chr1	21754993	.	A	T	1184.41	PASS	AC=1;AF=0.5;AN=2;DP=453;set=variant15-variant21-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1213,0,1539:27,40,22,36
chr1	21754996	.	C	T	3200.4	PASS	AC=2;AF=0.989;AN=2;DP=4876;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4471,373,0:0,0,49,75
chr1	21755055	.	C	A	1546.59	PASS	AC=2;AF=0.826;AN=2;DP=1962;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1870,168,0:0,0,17,39
chr1	21755135	.	T	G	881.09	PASS	AC=1;AF=0.671;AN=2;DP=836;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:703,0,505:15,3,18,3
chr1	21755288	.	A	ACCGCCGCGACT	2063.77	PASS	AC=1;AF=0.5;AN=2;DP=839;set=variant5-variant15-variant21-variant28-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:89,83:172:99:3555,0,3377:43,46,41,42
chr1	21755347	.	C	T	3292.91	PASS	AC=1;AF=0.671;AN=2;DP=6425;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,97:210:99:2360,0,2698:45,68,36,61
chr1	21755453	.	G	A	1047.64	PASS	AC=2;AF=0.826;AN=2;DP=2307;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1291,110,0:0,0,5,32
chr1	21755539	.	C	A	379.14	PASS	AC=2;AF=0.846;AN=2;DP=696;set=variant-variant2-filterInvariant3-variant4-variant5-variant7-filterInvariant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:574,45,0:0,0,7,8
chr1	21755747	.	A	G	2596.6	PASS	AC=1;AF=0.5;AN=2;DP=991;set=variant15-variant21-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:120,117:237:99:2625,0,2906:69,51,70,47
chr1	21755756	.	G	C	4868.3	PASS	AC=2;AF=0.826;AN=2;DP=10176;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,253:253:99:9337,762,0:0,0,146,107
chr1	21755867	.	A	G	5568.25	PASS	AC=2;AF=0.826;AN=2;DP=10910;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,296:296:99:8975,887,0:0,0,129,167
chr1	21755906	.	G	A	4328.42	PASS	AC=2;AF=0.826;AN=2;DP=8395;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,231:232:99:6791,683,0:0,1,98,133
chr1	21756008	.	G	T	1587.13	PASS	AC=2;AF=0.826;AN=2;DP=3302;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2398,235,0:0,0,21,58
chr1	21756069	.	G	A	848.77	PASS	AC=2;AF=0.826;AN=2;DP=1438;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1175,108,0:0,0,10,26
chr1	21766663	.	G	C	3085.14	PASS	AC=1;AF=0.667;AN=2;DP=2461;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,40:89:99:1021,0,1347:32,17,27,13
chr1	21766776	.	G	C	2136.29	PASS	AC=1;AF=0.583;AN=2;DP=3965;MQ=60;set=variant2-variant3-variant4-variant8-variant14-variant15-variant19-variant21-variant23-variant26-variant30-variant31-variant35-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,127:276:99:2783,0,3554:80,69,62,65
chr1	21795388	.	A	G	3820.42	PASS	AC=1;AF=0.667;AN=2;DP=5991;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:106,108:214:99:2628,0,2586:44,62,46,62
chr1	21799489	.	T	C	3046.81	PASS	AC=1;AF=0.817;AN=2;DP=4170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,58:139:99:1432,0,2069:31,50,18,40
chr1	21799823	.	A	G	1072.45	PASS	AC=1;AF=0.793;AN=2;DP=1856;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:854,0,975:26,2,23,0
chr1	21801346	.	G	A	1783.8	PASS	AC=1;AF=0.817;AN=2;DP=2240;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,43:69:99:1104,0,664:16,10,28,15
chr1	21804815	.	T	G	1895.64	PASS	AC=2;AF=1;AN=2;DP=5808;FS=0;MQRankSum=-0.374;ReadPosRankSum=1.677;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4339,429,0:0,0,58,85
chr1	21805730	.	A	G	3152.45	PASS	AC=1;AF=0.817;AN=2;DP=4365;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,68:143:99:1693,0,1983:48,27,43,25
chr1	21805978	.	G	A	1998.63	PASS	AC=1;AF=0.817;AN=2;DP=3233;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,53:111:99:1530,0,1667:18,40,14,39
chr1	21806619	.	T	C	614.22	PASS	AC=1;AF=0.844;AN=2;DP=719;set=variant-filterInvariant5-variant7-variant10-variant11-variant12-filterInvariant15-variant16-variant17-variant22-variant25-variant29-variant32-variant33-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:112,10:122:62:62,0,9627:54,58,2,8
chr1	21808159	.	G	A	1222.52	DRAGENHardSNP	AC=1;AF=0.525;AN=2;DP=5615;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:190,26:216:62:62,0,4296:94,96,9,17
chr1	21809924	.	G	C	49.31	PASS	AC=2;AF=1;AN=2;DP=37;FS=0;FractionInformativeReads=1;set=variant3-variant4-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant15-variant16-variant20-filterInvariant21-filterInvariant25-filterInvariant32-variant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:64,6,0:0,0,0,2
chr1	21880818	.	CAT	CATATAT,CATAT,C,CATATATAT	193.4	PASS	AC=1,0,0,0;AF=0.638,0.138,0.013,0.025;AN=2;DP=1054;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:21:99:1,10,4,6
chr1	21889635	.	T	C	2897.73	PASS	AC=2;AF=0.955;AN=2;DP=7280;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5038,506,0:0,0,90,79
chr1	21890464	.	A	G	772.73	PASS	AC=2;AF=1;AN=2;DP=1472;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1127,104,0:0,0,30,5
chr1	21900420	.	A	G	624.89	PASS	AC=2;AF=0.816;AN=2;DP=2362;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2289,222,0:0,0,30,44
chr1	21900459	.	A	C	175.65	PASS	AC=1;AF=0.583;AN=2;DP=761;MQ=60;set=variant7-variant8-variant9-variant10-variant15-variant20-variant21-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:677,0,629:6,16,9,17
chr1	21900891	.	G	A	1014.58	PASS	AC=2;AF=0.966;AN=2;DP=963;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1467,123,0:0,0,32,9
chr1	21901025	.	T	TAC	2120.86	PASS	AC=1;AF=0.717;AN=2;DP=4039;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant29-variant31-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,66:140:99:1518,0,2449:39,35,36,30
chr1	21901277	.	A	G	236.88	PASS	AC=2;AF=0.932;AN=2;DP=1313;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:804,69,0:0,0,5,18
chr1	21904206	.	C	T	2004.06	PASS	AC=1;AF=0.607;AN=2;DP=2123;MQ=60;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:986,0,1184:10,26,11,26
chr1	21904262	.	AC	A	874.2	PASS	AC=1;AF=0.5;AN=2;DP=368;MQ=60;set=variant8-variant15-variant21-variant26-variant31-variant37	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:870,0,760:12,14,11,18
chr1	21904267	.	A	G	689.61	PASS	AC=2;AF=0.798;AN=2;DP=2516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2188,173,0:0,0,25,33
chr1	21922893	.	CG	C	1895.97	PASS	AC=2;AF=0.591;AN=2;DP=1354;MQ=60;set=variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2205,205,0:0,0,34,34
chr1	21925108	.	T	C	135.29	PASS	AC=2;AF=0.952;AN=2;DP=456;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	21926187	.	C	T	40.71	PASS	AC=2;AF=0.688;AN=2;DP=460;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:767,63,0:0,0,8,13
chr1	21928344	.	C	G	902.31	PASS	AC=1;AF=0.558;AN=2;DP=1675;MQ=60;set=variant2-variant3-variant8-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,34:82:99:895,0,1366:13,35,10,24
chr1	21929260	.	A	G	4055.81	PASS	AC=2;AF=0.932;AN=2;DP=6285;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5507,554,0:0,0,88,97
chr1	21929456	.	GC	G	434.58	PASS	AC=2;AF=0.763;AN=2;DP=1747;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1258,124,0:0,0,9,32
chr1	21932530	.	C	A	2269.11	PASS	AC=2;AF=0.807;AN=2;DP=3315;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2878,276,0:0,0,61,32
chr1	21934667	.	G	A	619.76	PASS	AC=2;AF=0.662;AN=2;DP=2505;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,69:70:99:2050,198,0:1,0,36,33
chr1	21935433	.	G	T	1057.33	PASS	AC=2;AF=0.69;AN=2;DP=3172;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3856,377,0:0,0,53,73
chr1	21938375	.	T	G	723.78	PASS	AC=2;AF=0.581;AN=2;DP=1870;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3033,273,0:0,0,41,50
chr1	21939493	.	G	C	1167.84	PASS	AC=2;AF=0.586;AN=2;DP=2517;FractionInformativeReads=1;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3574,312,0:0,0,77,27
chr1	21940555	.	C	T	57.15	PASS	AC=2;AF=0.625;AN=2;DP=1533;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1900,185,0:0,0,25,37
chr1	21944352	.	A	G	511.03	PASS	AC=2;AF=0.574;AN=2;DP=1720;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2349,239,0:0,0,48,32
chr1	21946415	.	G	A	543.84	PASS	AC=2;AF=0.837;AN=2;DP=1156;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1241,114,0:0,0,27,11
chr1	21948936	.	G	C	66.22	PASS	AC=2;AF=0.892;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:573,57,0:0,0,11,8
chr1	21953436	.	A	G	2890.98	PASS	AC=2;AF=0.852;AN=2;DP=6396;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4894,487,0:0,0,73,90
chr1	21961339	.	A	T	1434.36	PASS	AC=2;AF=1;AN=2;DP=3863;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2835,282,0:0,0,43,51
chr1	21975923	.	G	T	290.68	PASS	AC=2;AF=0.821;AN=2;DP=472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:600,48,0:0,0,12,4
chr1	21991474	.	G	A	166.95	PASS	AC=1;AF=0.5;AN=2;DP=49;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:212,0,332:8,3,6,1
chr1	21991760	.	C	T	3411.28	PASS	AC=1;AF=0.5;AN=2;DP=924;MQ=60;set=variant14-variant15-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:120,110:230:99:2648,0,2843:57,63,51,59
chr1	21995574	.	C	T	185.64	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:379,0,387:9,4,8,5
chr1	21995734	.	G	T	391.35	PASS	AC=1;AF=0.5;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:32,52:84:99:1132,0,764:15,17,24,28
chr1	22005665	.	C	T	344.05	PASS	AC=1;AF=0.545;AN=2;DP=1041;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant17-variant18-variant19-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,33:55:99:1064,0,593:3,19,11,22
chr1	22007443	.	C	T	349.78	PASS	AC=1;AF=0.611;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant25-variant26-variant30-variant34-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:333,0,355:5,7,1,9
chr1	22013561	.	C	A	275.25	PASS	AC=1;AF=0.808;AN=2;DP=592;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:183,0,285:7,1,4,1
chr1	22013771	.	G	A	601.14	PASS	AC=1;AF=0.633;AN=2;DP=1786;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:876,0,869:13,20,17,17
chr1	22030189	.	T	C	964.95	PASS	AC=1;AF=0.591;AN=2;DP=909;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant33-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:792,0,516:4,14,7,20
chr1	22032472	.	A	AT	283.32	PASS	AC=2;AF=1;AN=2;DP=459;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:30:328,30,0:0,0,5,4
chr1	22032570	.	T	G	797.03	PASS	AC=1;AF=0.587;AN=2;DP=1035;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant33-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:743,0,441:11,7,19,5
chr1	22033228	.	G	A	2797.68	PASS	AC=1;AF=0.536;AN=2;DP=2541;MQ=60;set=variant3-variant6-variant7-variant11-variant15-variant16-variant17-variant18-variant21-variant25-variant28-variant32-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:87,96:183:99:2064,0,2098:38,49,48,48
chr1	22050649	.	C	A	880.68	PASS	AC=2;AF=0.775;AN=2;DP=4313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4104,384,0:0,0,60,68
chr1	22054262	.	T	C	746.99	PASS	AC=1;AF=0.571;AN=2;DP=430;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant15-variant17-variant23-variant25-variant26-variant29-variant30-variant34-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:448,0,798:20,1,13,2
chr1	22054427	.	C	A	3968.56	PASS	AC=2;AF=0.729;AN=2;DP=11447;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,409:409:99:12240,1226,0:0,0,225,184
chr1	22063149	.	G	A	818.23	PASS	AC=2;AF=0.729;AN=2;DP=2204;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2335,239,0:0,0,31,49
chr1	22082923	.	G	A	144.4	PASS	AC=2;AF=0.75;AN=2;DP=430;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:567,39,0:0,0,13,0
chr1	22082967	.	CAA	CA,C,CAAA	238.1	PASS	AC=1,1,0;AF=0.397,0.256,0.013;AN=2;DP=1222;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	2/1:32:99:3,0,22,7
chr1	22110072	.	A	G	879.57	PASS	AC=2;AF=1;AN=2;DP=2118;FS=0;MQ=60;MQRankSum=1.511;ReadPosRankSum=1.659;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1705,158,0:0,0,19,34
chr1	22141206	.	A	C	4000.14	PASS	AC=1;AF=0.789;AN=2;DP=4317;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,54:134:99:1256,0,2110:39,41,26,28
chr1	22149935	.	T	C	4455.8	PASS	AC=2;AF=0.807;AN=2;DP=15828;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,385:385:99:11823,1154,0:0,0,188,197
chr1	22150257	.	C	T	982.87	PASS	AC=2;AF=0.653;AN=2;DP=5143;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,149:150:99:4475,435,0:0,1,77,72
chr1	22155723	.	T	C	247.06	PASS	AC=2;AF=0.807;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1232,90,0:0,0,24,6
chr1	22157689	.	G	A	3397.03	PASS	AC=2;AF=0.807;AN=2;DP=14812;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,399:400:99:11853,1182,0:1,0,195,204
chr1	22158363	.	G	A	896.55	PASS	AC=2;AF=0.657;AN=2;DP=2491;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2201,200,0:0,0,19,48
chr1	22160148	.	C	T	580.97	PASS	AC=2;AF=0.653;AN=2;DP=2424;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3108,267,0:0,0,20,69
chr1	22168216	.	C	T	805.83	PASS	AC=2;AF=0.789;AN=2;DP=3101;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2445,215,0:0,0,25,47
chr1	22172458	.	T	C	47.19	PASS	AC=2;AF=0.821;AN=2;DP=686;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:736,72,0:0,0,15,9
chr1	22174600	.	A	G	1466.15	PASS	AC=2;AF=0.807;AN=2;DP=5238;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4249,378,0:0,0,46,80
chr1	22176915	.	C	T	1670.59	PASS	AC=1;AF=0.5;AN=2;DP=304;MQ=60;set=variant7-variant15	GT:AD:DP:GQ:PL:SB	0/1:67,73:140:99:1388,0,1835:37,30,36,37
chr1	22177119	.	A	G	266.75	PASS	AC=2;AF=0.657;AN=2;DP=944;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1369,108,0:0,0,6,30
chr1	22179673	.	T	C	1294.29	PASS	AC=2;AF=0.653;AN=2;DP=4103;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4890,447,0:0,0,47,102
chr1	22180548	.	T	C	752.16	PASS	AC=2;AF=0.814;AN=2;DP=4441;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,125:126:99:3740,367,0:1,0,60,65
chr1	22181360	.	G	C	1576.12	PASS	AC=1;AF=0.5;AN=2;DP=333;FractionInformativeReads=1;MQ=60;set=variant8-variant15	GT:AD:DP:GQ:PL:SB	0/1:94,93:187:99:2404,0,2572:40,54,46,47
chr1	22183471	.	A	C	516.4	PASS	AC=2;AF=0.807;AN=2;DP=3047;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2918,287,0:0,0,59,37
chr1	22183739	.	A	G	2671.26	PASS	AC=2;AF=0.708;AN=2;DP=8784;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,258:258:99:8145,774,0:0,0,119,139
chr1	22186234	.	A	G	1635.47	PASS	AC=2;AF=0.977;AN=2;DP=2092;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2289,195,0:0,0,41,24
chr1	22190826	.	G	GC	181.29	PASS	AC=1;AF=0.526;AN=2;DP=486;MQ=60;set=variant-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant25-variant26-variant32-variant33-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:326,0,433:6,10,3,10
chr1	22191454	.	G	A	2395.87	PASS	AC=1;AF=0.762;AN=2;DP=9068;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,134:268:99:3326,0,3290:55,79,53,81
chr1	22199081	.	A	T	1974.59	PASS	AC=2;AF=1;AN=2;DP=3900;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2703,255,0:0,0,39,47
chr1	22199245	.	C	T	1730.45	PASS	AC=2;AF=0.743;AN=2;DP=4772;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:4719,490,0:0,0,83,81
chr1	22199821	.	G	A	1308.45	PASS	AC=2;AF=0.872;AN=2;DP=2495;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,68:70:99:1961,159,0:1,1,43,25
chr1	22200067	.	A	G	491.86	PASS	AC=2;AF=0.7;AN=2;DP=2685;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2550,243,0:0,0,32,49
chr1	22200082	.	T	C	1176.21	PASS	AC=2;AF=1;AN=2;DP=2486;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2048,204,0:0,0,27,41
chr1	22200835	.	C	G	946.74	PASS	AC=2;AF=1;AN=2;DP=1369;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1352,117,0:0,0,18,21
chr1	22202109	.	C	T	2571.24	PASS	AC=2;AF=1;AN=2;DP=3957;FS=0;MQ=60;MQRankSum=1.447;ReadPosRankSum=0.925;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3372,308,0:0,0,67,36
chr1	22203259	.	A	G	111	PASS	AC=2;AF=0.731;AN=2;DP=1306;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1255,102,0:0,0,6,28
chr1	22205408	.	T	C	230.25	PASS	AC=2;AF=1;AN=2;DP=595;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:663,51,0:0,0,12,5
chr1	22205466	.	T	C	340.68	PASS	AC=2;AF=1;AN=2;DP=1188;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1414,129,0:0,0,29,14
chr1	22206649	.	T	C	3462.23	PASS	AC=2;AF=1;AN=2;DP=5477;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4681,431,0:0,0,76,68
chr1	22206942	.	G	A	6380.41	PASS	AC=2;AF=1;AN=2;DP=11056;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,302:302:99:9318,901,0:0,0,139,163
chr1	22207235	.	T	C	2383.37	PASS	AC=2;AF=1;AN=2;DP=4546;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4352,414,0:0,0,57,81
chr1	22207804	.	ACCCAGGGTGGCAG	A	4260.86	PASS	AC=2;AF=1;AN=2;DP=6434;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:7386,502,0:0,0,93,73
chr1	22208030	.	C	T	1463.69	PASS	AC=2;AF=0.989;AN=2;DP=2241;FS=0;MQ=60;MQRankSum=0.974;ReadPosRankSum=2.15;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1941,173,0:0,0,18,40
chr1	22211222	.	T	C	6222.06	PASS	AC=2;AF=0.886;AN=2;DP=8824;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6333,624,0:0,0,128,80
chr1	22215088	.	T	C	4137.26	PASS	AC=2;AF=1;AN=2;DP=5899;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4548,446,0:0,0,89,60
chr1	22216574	.	C	A	652.52	PASS	AC=2;AF=0.731;AN=2;DP=4047;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3144,296,0:0,0,42,57
chr1	22216604	.	C	G	573.46	PASS	AC=2;AF=0.731;AN=2;DP=3376;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2684,252,0:0,0,39,45
chr1	22217108	.	G	A	3996.52	PASS	AC=2;AF=1;AN=2;DP=8719;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6187,629,0:0,0,102,109
chr1	22299656	.	T	G	2090.29	PASS	AC=1;AF=0.737;AN=2;DP=1831;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:749,0,771:23,5,20,7
chr1	22303465	.	C	T	2889.51	PASS	AC=1;AF=0.5;AN=2;DP=1776;set=variant3-variant8-variant14-variant15-variant29-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:132,143:275:99:3366,0,3183:67,65,75,68
chr1	22303702	.	C	A	560.74	PASS	AC=1;AF=0.625;AN=2;DP=930;set=variant2-variant3-variant4-variant5-variant6-variant8-variant12-variant14-variant15-variant16-variant21-variant24-variant27-variant29-variant31-variant33-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:525,0,786:4,22,7,18
chr1	22304428	.	C	G	411.52	PASS	AC=2;AF=1;AN=2;DP=666;FS=0;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,6,1
chr1	22304429	.	C	T	411.52	PASS	AC=2;AF=1;AN=2;DP=675;FS=0;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,6,1
chr1	22304463	.	A	G	632.54	PASS	AC=2;AF=0.939;AN=2;DP=803;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant17-filterInvariant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:317,27,0:0,0,8,1
chr1	22304712	.	A	G	1569.01	PASS	AC=1;AF=0.793;AN=2;DP=1636;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,22:32:99:768,0,311:9,1,5,17
chr1	22307340	.	C	T	1079.65	PASS	AC=2;AF=0.966;AN=2;DP=1454;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1282,93,0:0,0,29,2
chr1	22307358	.	C	G	1413.84	PASS	AC=2;AF=0.966;AN=2;DP=2313;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2058,165,0:0,0,45,10
chr1	22307538	.	C	T	3489.79	PASS	AC=2;AF=0.989;AN=2;DP=6013;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4552,446,0:0,0,62,87
chr1	22310139	.	T	G	5088.23	PASS	AC=2;AF=0.966;AN=2;DP=5715;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:7435,506,0:0,0,121,39
chr1	22310145	.	C	T	5286.66	PASS	AC=2;AF=0.966;AN=2;DP=6223;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:7761,538,0:0,0,136,42
chr1	22310262	.	G	C	9192.96	PASS	AC=2;AF=0.966;AN=2;DP=19163;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,539:539:99:15225,1615,0:0,0,267,272
chr1	22310411	.	A	G	2301.01	PASS	AC=2;AF=0.943;AN=2;DP=3931;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:4387,336,0:0,0,37,73
chr1	22310413	.	A	G	2301.01	PASS	AC=1;AF=0.884;AN=2;DP=3747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1496,0,1501:25,32,14,39
chr1	22310662	.	G	T	8422.62	PASS	AC=1;AF=0.932;AN=2;DP=18598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:326,273:599:99:6606,0,7790:149,177,131,142
chr1	22310674	.	C	T	8334.33	PASS	AC=2;AF=0.966;AN=2;DP=17648;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,566:567:99:16770,1682,0:1,0,245,321
chr1	22310725	.	G	C	5771.42	PASS	AC=1;AF=0.932;AN=2;DP=11307;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:175,183:358:99:4486,0,4560:55,120,64,119
chr1	22310807	.	A	G	900.03	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;set=variant14-variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:1219,0,1679:2,43,4,32
chr1	22310824	.	T	C	982.03	PASS	AC=2;AF=0.989;AN=2;DP=1615;MQRankSum=0.147;ReadPosRankSum=1.292;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2352,166,0:0,0,2,53
chr1	22312998	.	C	T	1813.97	PASS	AC=1;AF=0.5;AN=2;DP=531;set=variant14-variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:81,116:197:99:2826,0,1996:56,25,72,44
chr1	22313161	.	T	C	2287.51	PASS	AC=2;AF=0.966;AN=2;DP=7176;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:5930,575,0:0,0,71,121
chr1	22313197	.	C	A	1227.56	PASS	AC=1;AF=0.845;AN=2;DP=4251;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,70:124:99:2042,0,1489:14,40,17,53
chr1	22315738	.	C	T	207.04	PASS	AC=1;AF=0.851;AN=2;DP=331;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:82:82,0,337:3,9,1,3
chr1	22324705	.	T	C	2376.38	PASS	AC=1;AF=0.604;AN=2;DP=4207;set=variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant26-variant27-variant29-variant31-variant33-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,94:216:99:2081,0,2803:58,64,44,50
chr1	22325016	.	T	C	80.13	PASS	AC=1;AF=0.625;AN=2;DP=336;FractionInformativeReads=1;set=variant2-variant4-variant5-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant24-variant26-variant27-variant29-variant31-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:376,0,487:5,12,6,9
chr1	22325061	.	G	A	286.77	PASS	AC=1;AF=0.786;AN=2;DP=315;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:99:391,0,110:0,4,3,9
chr1	22327961	.	C	G	121.67	PASS	AC=1;AF=0.5;AN=2;DP=413;FractionInformativeReads=1;set=variant-variant2-variant8-variant9-variant14-variant15-variant18-variant22-variant29-variant33-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:1181,0,1518:18,5,24,5
chr1	22327963	.	A	G	121.67	PASS	AC=1;AF=0.5;AN=2;DP=288;FractionInformativeReads=1;set=variant-variant2-variant9-variant14-variant15-variant18-variant22-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:1181,0,1518:18,5,25,5
chr1	22329041	.	GC	G	1377.79	PASS	AC=1;AF=0.5;AN=2;DP=4286;set=variant2-variant4-variant5-variant6-variant12-variant14-variant15-variant16-variant21-variant24-variant27-variant29-variant31-variant33-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,60:276:99:1294,0,12844:150,66,49,11
chr1	22329062	.	C	G	3049.13	PASS	AC=1;AF=0.5;AN=2;DP=13932;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:215,169:384:99:6435,0,10884:143,72,107,62
chr1	22329063	.	C	T	3049.13	PASS	AC=1;AF=0.5;AN=2;DP=14150;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:216,170:386:99:6435,0,10884:143,73,107,63
chr1	22329346	.	G	A	313.55	PASS	AC=1;AF=0.5;AN=2;DP=1221;set=variant2-variant4-filterInvariant5-variant6-filterInvariant12-variant14-variant15-variant16-variant21-variant24-variant27-variant29-variant31-variant33-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,17:69:99:414,0,1875:13,39,0,17
chr1	22329407	.	G	C	988.55	PASS	AC=1;AF=0.567;AN=2;DP=1045;FractionInformativeReads=1;set=variant4-variant5-variant6-variant8-variant12-variant14-variant15-variant16-variant21-variant24-variant27-variant31-variant33-variant39-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:53,23:76:99:773,0,2185:33,20,17,6
chr1	22329414	.	G	A	2395.51	PASS	AC=1;AF=0.756;AN=2;DP=2956;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,56:77:99:1500,0,799:17,4,35,21
chr1	22329417	.	T	C	76.63	PASS	AC=1;AF=0.591;AN=2;DP=704;FractionInformativeReads=1;set=filterInvariant2-variant13-variant14-variant15-variant17-variant26-variant27-variant29-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,23:79:99:785,0,2279:35,21,19,4
chr1	22329603	.	C	T	468.41	PASS	AC=1;AF=0.5;AN=2;DP=308;FractionInformativeReads=1;set=variant14-variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:64,55:119:99:1346,0,1783:25,39,17,38
chr1	22329645	.	T	C	214.75	PASS	AC=1;AF=0.611;AN=2;DP=874;set=variant4-variant5-variant6-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant26-variant27-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,21:68:99:587,0,1278:17,30,2,19
chr1	22332319	.	G	A	1058.79	PASS	AC=1;AF=0.5;AN=2;DP=4189;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,27:95:99:924,0,3565:30,38,19,8
chr1	22332332	.	T	C	1217.72	PASS	AC=1;AF=0.5;AN=2;DP=4438;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,30:102:99:1107,0,3777:33,39,19,11
chr1	22332333	.	G	A	1223.74	PASS	AC=1;AF=0.5;AN=2;DP=4459;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,32:104:99:1107,0,3777:33,39,21,11
chr1	22332411	.	A	G	842.63	PASS	AC=1;AF=0.5;AN=2;DP=4695;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,40:102:99:803,0,1537:27,35,19,21
chr1	22333595	.	G	A	2130.01	PASS	AC=1;AF=0.731;AN=2;DP=4186;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,68:130:99:2049,0,1823:17,45,16,52
chr1	22336179	.	TC	T	2527.47	PASS	AC=1;AF=0.5;AN=2;DP=424;FractionInformativeReads=1;set=variant14-variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:67,60:127:99:1805,0,2114:43,24,36,24
chr1	22336277	.	C	G	3553.56	PASS	AC=2;AF=0.977;AN=2;DP=8843;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5651,556,0:0,0,84,102
chr1	22336305	.	C	T	3104.12	PASS	AC=1;AF=0.583;AN=2;DP=2261;set=variant4-variant5-variant6-variant12-variant14-variant15-variant16-variant21-variant24-variant27-variant31-variant33	GT:AD:DP:GQ:PL:SB	0/1:106,77:183:99:2858,0,4205:48,58,33,44
chr1	22336308	.	G	A	3104.12	PASS	AC=1;AF=0.583;AN=2;DP=2229;set=variant4-variant5-variant6-variant12-variant14-variant15-variant16-variant21-variant24-variant27-variant31-variant33	GT:AD:DP:GQ:PL:SB	0/1:106,76:182:99:2823,0,4230:48,58,33,43
chr1	22336371	.	C	A	1465.68	PASS	AC=1;AF=0.793;AN=2;DP=3942;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,61:96:99:1559,0,886:11,24,21,40
chr1	22336643	.	G	C	409.3	PASS	AC=1;AF=0.5;AN=2;DP=171;FractionInformativeReads=1;set=variant8-variant14-variant15-variant27-variant29-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:506,0,407:12,0,14,1
chr1	22336810	.	C	CA	479.74	PASS	AC=1;AF=0.731;AN=2;DP=1719;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:474,0,709:9,21,5,17
chr1	22379088	.	G	A	1237.64	PASS	AC=1;AF=0.775;AN=2;DP=2919;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,40:96:99:853,0,1312:35,21,25,15
chr1	22408106	.	G	A	3488.62	PASS	AC=1;AF=0.919;AN=2;DP=4751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,65:140:99:1531,0,1805:39,36,35,30
chr1	22447148	.	G	C	1209.43	PASS	AC=1;AF=0.919;AN=2;DP=1095;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:335,0,433:1,12,2,9
chr1	22447645	.	C	CTG	178.89	PASS	AC=1;AF=0.826;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:704,0,797:18,3,14,2
chr1	22837586	.	CTT	CT,C,CTTT	481.62	PASS	AC=1,0,0;AF=0.513,0.013,0.013;AN=2;DP=2042;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:50:99:20,11,11,8
chr1	22846709	.	G	A	917.45	PASS	AC=2;AF=1;AN=2;DP=2483;FS=0;MQ=60;MQRankSum=1.253;ReadPosRankSum=1.253;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2226,207,0:0,0,26,43
chr1	22912819	.	T	C	605.81	PASS	AC=2;AF=0.989;AN=2;DP=951;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.506;ReadPosRankSum=-0.985;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:975,102,0:0,0,19,15
chr1	22925292	.	C	G	4989.23	PASS	AC=2;AF=1;AN=2;DP=7907;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:6070,605,0:0,0,127,76
chr1	22928305	.	G	T	1186.46	PASS	AC=1;AF=0.5;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant22-variant33-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,35:82:99:898,0,1332:18,29,15,20
chr1	22929662	.	T	C	45.52	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=44;FS=24.522;FractionInformativeReads=0.955;MQ=60;MQRankSum=0.35;QD=1.03;ReadPosRankSum=-0.893;SOR=3.588;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:37,5:42:74:74,0,4138:10,27,5,0
chr1	22929671	.	T	C	30.18	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=45;FS=25.583;FractionInformativeReads=0.978;MQ=60;MQRankSum=-0.481;QD=0.67;ReadPosRankSum=-1.775;SOR=3.587;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:39,5:44:58:58,0,4606:10,29,5,0
chr1	22974533	.	CTT	CT,C,CTTT	127.82	PASS	AC=1,0,0;AF=0.202,0.405,0.012;AN=2;DP=4096;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-filterInvariant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:94:99:36,33,12,13
chr1	22985839	.	AGATGGATGGATGGATG	AGATGGATGGATG,AGATGGATGGATGGATGGATG,A	790.53	PASS	AC=0,1,0;AF=0.576,0.091,0.015;AN=2;DP=1327;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:39:99:15,6,14,4
chr1	22987958	.	A	G	2213.71	PASS	AC=2;AF=0.989;AN=2;DP=3965;MQ=60;MQRankSum=-1.324;ReadPosRankSum=1.276;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2874,268,0:0,0,37,53
chr1	23045943	.	A	G	1185.36	PASS	AC=1;AF=0.614;AN=2;DP=2319;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant29-variant31-variant33-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1589,0,1371:34,26,31,29
chr1	23101688	.	T	G	1033.4	PASS	AC=2;AF=0.849;AN=2;DP=3059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2911,276,0:0,0,52,40
chr1	23107811	.	TAA	TA,T	289.15	PASS	AC=1,0;AF=0.512,0.256;AN=2;DP=1450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:31:3,2,18,3
chr1	23108089	.	A	G	52.74	PASS	AC=2;AF=0.829;AN=2;DP=554;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:477,39,0:0,0,2,11
chr1	23216712	.	T	C	1179.27	PASS	AC=1;AF=0.656;AN=2;DP=1388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:329,0,642:10,16,7,8
chr1	23219187	.	C	T	1368.17	PASS	AC=1;AF=0.65;AN=2;DP=1194;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:545,0,845:22,4,17,3
chr1	23219493	.	T	C	6536.6	PASS	AC=2;AF=1;AN=2;DP=13927;FS=0;MQ=60;MQRankSum=1.569;ReadPosRankSum=1.002;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,313:313:99:9541,938,0:0,0,158,155
chr1	23223116	.	C	T	827.84	PASS	AC=1;AF=0.65;AN=2;DP=1846;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,49:86:99:1330,0,1015:8,29,14,35
chr1	23236826	.	C	T	1400.29	PASS	AC=1;AF=0.652;AN=2;DP=2109;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,22:66:99:527,0,1129:25,19,13,9
chr1	23285678	.	A	G	61.77	PASS	AC=1;AF=0.932;AN=2;DP=302;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:44:75,0,44:2,1,0,2
chr1	23289568	.	T	C	1809.34	PASS	AC=1;AF=0.7;AN=2;DP=2842;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1126,0,1232:32,22,28,19
chr1	23291582	.	G	A	535.27	PASS	AC=1;AF=0.7;AN=2;DP=1101;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:392,0,754:18,11,11,6
chr1	23337885	.	CTT	C,CT,CTTT	133.09	PASS	AC=0,1,0;AF=0.05,0.35,0.1;AN=2;DP=207;set=variant2-filterInvariant5-variant10-variant13-variant14-filterInvariant15-variant16-variant23-variant27-variant39	GT:DP:GQ:SB	0/2:9:71:1,4,1,3
chr1	23342362	.	A	G	1759.42	PASS	AC=1;AF=0.813;AN=2;DP=2327;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,36:65:99:880,0,695:15,14,18,18
chr1	23356864	.	G	A	44.51	PASS	AC=1;AF=0.692;AN=2;DP=259;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:208,0,335:7,3,6,0
chr1	23380198	.	A	G	1049.64	PASS	AC=1;AF=0.805;AN=2;DP=1016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:487,0,417:10,4,13,4
chr1	23385826	.	CTT	C	1881.64	PASS	AC=1;AF=0.655;AN=2;DP=2407;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,28:81:99:1007,0,2363:27,26,15,13
chr1	23399932	.	C	T	2627.96	PASS	AC=1;AF=0.805;AN=2;DP=2674;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,50:98:99:1327,0,1123:17,31,16,34
chr1	23405794	.	A	C	1835.22	PASS	AC=1;AF=0.786;AN=2;DP=2365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:956,0,901:19,18,17,17
chr1	23410138	.	T	G	4461.2	PASS	AC=1;AF=0.684;AN=2;DP=7276;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,106:227:99:2139,0,5867:71,50,63,43
chr1	23410140	.	G	T	3821.42	PASS	AC=1;AF=0.805;AN=2;DP=7845;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:130,105:235:99:2123,0,6057:75,55,62,43
chr1	23410721	.	A	T	1190.34	PASS	AC=1;AF=0.817;AN=2;DP=1474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:669,0,755:15,13,14,9
chr1	23410742	.	A	C	1124.85	PASS	AC=1;AF=0.817;AN=2;DP=1483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:698,0,652:12,11,16,9
chr1	23411225	.	T	TC	17027.1	PASS	AC=1;AF=0.78;AN=2;DP=20363;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:283,261:544:99:6287,0,6940:144,139,131,130
chr1	23413027	.	T	C	880.17	PASS	AC=1;AF=0.805;AN=2;DP=1647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:445,0,856:16,15,11,8
chr1	23413458	.	T	G	869.67	PASS	AC=1;AF=0.805;AN=2;DP=1924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:347,0,498:11,13,7,7
chr1	23413707	.	T	C	580.87	PASS	AC=1;AF=0.793;AN=2;DP=1385;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:602,0,385:7,11,5,16
chr1	23414209	.	T	C	3826.77	PASS	AC=1;AF=0.618;AN=2;DP=4011;MQ=60;set=variant-variant5-variant6-variant7-variant12-variant13-variant15-variant17-variant22-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:132,173:305:99:4176,0,3194:71,61,75,98
chr1	23415102	.	T	C	863.91	PASS	AC=1;AF=0.805;AN=2;DP=1442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:494,0,698:12,12,12,9
chr1	23418153	.	C	T	7204.82	PASS	AC=1;AF=0.817;AN=2;DP=8265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:128,111:239:99:2823,0,3247:59,69,50,61
chr1	23419261	.	G	A	2969.66	PASS	AC=1;AF=0.809;AN=2;DP=4841;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant-variant36	GT:AD:DP:GQ:PL:SB	0/1:79,89:168:99:1947,0,2137:34,45,43,46
chr1	23419374	.	G	T	3057.47	PASS	AC=1;AF=0.805;AN=2;DP=4812;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,77:157:99:2884,0,4266:42,38,38,39
chr1	23419383	.	C	T	3092.39	PASS	AC=1;AF=0.805;AN=2;DP=4950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,73:155:99:2822,0,4274:43,39,37,36
chr1	23419855	.	T	C	4142.99	PASS	AC=1;AF=0.817;AN=2;DP=5140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,65:138:99:1532,0,2031:31,42,33,32
chr1	23435538	.	G	A	377.03	PASS	AC=1;AF=0.605;AN=2;DP=640;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant12-variant13-variant15-variant17-variant18-variant22-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:276,0,530:10,11,7,5
chr1	23495495	.	A	G	836.06	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:679,0,832:11,19,11,16
chr1	23518524	.	T	C	447.93	PASS	AC=1;AF=0.661;AN=2;DP=981;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:520,0,352:7,6,10,8
chr1	23519477	.	C	T	38.51	PASS	AC=1;AF=0.7;AN=2;DP=407;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:219,0,147:3,3,5,3
chr1	23519506	.	A	AT	166.21	PASS	AC=1;AF=0.563;AN=2;DP=163;MQ=60;set=variant6-variant7-variant15-variant22-variant30-variant31-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:255,0,255:6,3,6,3
chr1	23631625	.	A	G	3745.98	PASS	AC=2;AF=0.531;AN=2;DP=5997;set=variant5-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant25-variant26-variant27-variant33-variant34-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,454:454:99:14530,1360,0:0,0,220,234
chr1	23632206	.	ACT	A	5857.38	PASS	AC=1;AF=0.5;AN=2;DP=2084;MQ=60;set=variant5-variant12-variant14-variant15-variant26-variant35	GT:AD:DP:GQ:PL:SB	0/1:226,227:453:99:8844,0,8812:132,94,143,84
chr1	23632626	.	G	C	5920.58	PASS	AC=2;AF=0.864;AN=2;DP=6704;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5763,552,0:0,0,95,89
chr1	23633278	.	G	A	4604.01	PASS	AC=2;AF=0.989;AN=2;DP=5728;MQRankSum=-1.335;ReadPosRankSum=-2.619;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4776,455,0:0,0,104,48
chr1	23634055	.	CT	C	2485.38	PASS	AC=1;AF=0.5;AN=2;DP=548;MQ=60;set=variant5-variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:93,114:207:99:3637,0,2817:41,52,43,71
chr1	23636015	.	GTT	GT,G	1784.03	PASS	AC=0,2;AF=0.761,0.216;AN=2;DP=4309;set=Intersection	GT:DP:GQ:SB	2/2:100:99:1,1,44,54
chr1	23670803	.	G	C	1713.65	PASS	AC=2;AF=0.529;AN=2;DP=1639;MQ=60;set=variant5-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant25-variant26-variant27-variant33-variant34-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2891,272,0:0,0,39,50
chr1	23685968	.	T	C	126.36	PASS	AC=1;AF=0.583;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant5-variant14-variant15-variant26-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:237,0,172:5,1,5,3
chr1	23686246	.	C	T	1413.87	PASS	AC=2;AF=0.86;AN=2;DP=2163;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1918,183,0:0,0,22,39
chr1	23686777	.	C	T	2875.97	PASS	AC=1;AF=0.5;AN=2;DP=1402;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant25-variant27-variant33-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:112,103:215:99:2706,0,2867:48,64,37,66
chr1	23686798	.	A	G	2753.5	PASS	AC=1;AF=0.5;AN=2;DP=1358;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant25-variant27-variant33-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,94:199:99:2535,0,2832:45,60,39,55
chr1	23687827	.	T	C	175.14	PASS	AC=2;AF=0.531;AN=2;DP=376;MQ=60;set=variant5-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant25-variant26-variant27-variant33-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:773,69,0:0,0,13,10
chr1	23688178	.	A	G	469.38	PASS	AC=2;AF=0.872;AN=2;DP=1593;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1686,117,0:1,0,23,27
chr1	23689083	.	G	A	2317.09	PASS	AC=1;AF=0.5;AN=2;DP=1155;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant15-variant26-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:103,99:202:99:2560,0,2867:38,65,43,56
chr1	23689786	.	AT	A	63.81	PASS	AC=2;AF=0.583;AN=2;DP=218;MQ=60;set=variant5-variant8-variant10-variant12-variant15-variant16-variant18-variant26-variant27-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:392,45,0:0,0,1,14
chr1	23693385	.	T	C	963.62	PASS	AC=2;AF=0.531;AN=2;DP=1053;MQ=60;set=variant5-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant25-variant26-variant27-variant33-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2262,210,0:0,0,46,24
chr1	23694639	.	G	A	1564.15	PASS	AC=1;AF=0.5;AN=2;DP=995;MQ=60;set=variant8-variant15-variant16-variant25-variant27-variant33-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,99:157:99:2481,0,1418:37,21,57,42
chr1	23696152	.	G	A	1910.81	PASS	AC=2;AF=0.86;AN=2;DP=3368;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2339,225,0:0,0,25,50
chr1	23697617	.	T	C	577.9	PASS	AC=2;AF=0.531;AN=2;DP=740;MQ=60;set=variant5-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant25-variant26-variant27-variant33-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1468,114,0:0,0,25,13
chr1	23698120	.	C	G	1336.32	PASS	AC=1;AF=0.5;AN=2;DP=621;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant15-variant26-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1195,0,1256:17,28,19,23
chr1	23707692	.	A	G	845.93	PASS	AC=2;AF=0.872;AN=2;DP=909;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:695,63,0:0,0,15,6
chr1	23710805	.	A	G	2808.84	PASS	AC=2;AF=0.86;AN=2;DP=4647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4413,446,0:0,0,89,60
chr1	23713952	.	T	G	3230.05	PASS	AC=2;AF=0.86;AN=2;DP=5710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3795,394,0:0,0,63,69
chr1	23720260	.	T	G	874.87	PASS	AC=2;AF=0.875;AN=2;DP=1271;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1133,93,0:0,0,24,7
chr1	23723935	.	G	A	374.33	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant12-variant14-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:307,0,637:16,7,9,4
chr1	23724183	.	C	T	1031.36	PASS	AC=1;AF=0.711;AN=2;DP=1764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:593,0,635:7,14,8,13
chr1	23724514	.	C	T	525.67	PASS	AC=1;AF=0.5;AN=2;DP=234;FractionInformativeReads=1;set=variant5-variant9-variant12-variant14-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:779,0,509:5,13,6,20
chr1	23730151	.	C	T	1684.65	PASS	AC=1;AF=0.5;AN=2;DP=1061;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant12-variant14-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:101,83:184:99:2071,0,2948:36,65,33,50
chr1	23735241	.	G	T	1693.89	PASS	AC=2;AF=0.837;AN=2;DP=3760;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3342,346,0:0,0,54,62
chr1	23743581	.	C	G	1449.24	PASS	AC=1;AF=0.738;AN=2;DP=2089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:791,0,619:14,11,21,8
chr1	23751140	.	G	T	13006.5	PASS	AC=1;AF=0.667;AN=2;DP=16369;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:277,234:511:99:5111,0,6530:112,165,91,143
chr1	23755513	.	T	C	2326.93	PASS	AC=2;AF=0.841;AN=2;DP=3690;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2728,261,0:0,0,35,52
chr1	23755716	.	T	C	1468.01	PASS	AC=2;AF=0.841;AN=2;DP=2175;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1806,165,0:0,0,30,25
chr1	23756155	.	T	C	958.14	PASS	AC=2;AF=0.841;AN=2;DP=2165;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1526,143,0:0,0,25,23
chr1	23756695	.	A	G	905.77	PASS	AC=1;AF=0.791;AN=2;DP=841;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:136,0,316:6,7,2,5
chr1	23758134	.	A	G	2505.25	PASS	AC=2;AF=0.841;AN=2;DP=3842;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3444,336,0:0,0,54,58
chr1	23762679	.	A	G	292.45	PASS	AC=1;AF=0.738;AN=2;DP=855;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:353,0,427:2,11,4,8
chr1	23763449	.	G	A	950.66	PASS	AC=1;AF=0.5;AN=2;DP=775;MQ=60;set=variant-variant5-variant15-variant16-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,59:153:99:1384,0,2435:53,41,36,23
chr1	23765472	.	A	G	1280.56	PASS	AC=2;AF=0.841;AN=2;DP=2030;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,52:53:99:1822,149,0:1,0,15,37
chr1	23769359	.	T	C	733.04	PASS	AC=1;AF=0.784;AN=2;DP=1354;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:600,0,462:9,12,7,16
chr1	23802754	.	G	A	150.42	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:313,0,268:7,0,8,1
chr1	23810658	.	G	A	1954.68	PASS	AC=1;AF=0.689;AN=2;DP=2594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,41:103:99:828,0,1383:27,35,17,24
chr1	23833599	.	A	AT	307.94	PASS	AC=1;AF=0.583;AN=2;DP=887;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:299,0,484:8,11,6,7
chr1	23833611	.	G	T	349.56	PASS	AC=1;AF=0.583;AN=2;DP=823;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:272,0,514:8,12,7,8
chr1	23833993	.	G	A	53.54	PASS	AC=1;AF=0.75;AN=2;DP=83;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant9-variant10-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant27-variant29-variant31-variant32-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,76:2,1,2,0
chr1	23834486	.	G	A	457.01	PASS	AC=1;AF=0.552;AN=2;DP=1490;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,17:52:99:399,0,909:14,21,6,11
chr1	23835794	.	A	G	268.56	PASS	AC=1;AF=0.581;AN=2;DP=1421;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,22:61:99:468,0,963:16,23,11,11
chr1	23836364	.	A	G	1398.86	PASS	AC=1;AF=0.583;AN=2;DP=3622;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,65:141:99:1681,0,1990:41,35,36,29
chr1	23843110	.	C	T	518.08	PASS	AC=1;AF=0.5;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1193,0,1137:17,29,12,32
chr1	23845742	.	C	T	335	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:360,0,469:4,12,1,10
chr1	23847464	.	C	A	462.85	PASS	AC=1;AF=0.581;AN=2;DP=2194;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,46:71:99:1098,0,612:11,14,22,24
chr1	23847529	.	C	T	962.74	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.22;QD=12.84;ReadPosRankSum=0.295;SOR=0.804;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:991,0,705:15,17,19,24
chr1	23847709	.	C	G	213.93	PASS	AC=2;AF=0.621;AN=2;DP=949;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1049,108,0:0,0,16,20
chr1	23884369	.	T	C	1706.08	PASS	AC=1;AF=0.5;AN=2;DP=882;MQ=60;set=variant5-variant7-variant11-variant12-variant14-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,80:166:99:1938,0,2167:50,36,46,34
chr1	23884661	.	G	A	3845.45	PASS	AC=2;AF=0.821;AN=2;DP=5801;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,160:161:99:5092,472,0:0,1,74,86
chr1	23884991	.	G	A	111.11	PASS	AC=1;AF=0.5;AN=2;DP=88;MQ=60;set=variant5-variant7-variant11-variant12-variant14-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:180,0,311:1,8,0,5
chr1	23885230	.	C	G	401.03	PASS	AC=1;AF=0.617;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:459,0,463:13,4,10,6
chr1	23885498	.	T	C	2838.85	PASS	AC=2;AF=0.929;AN=2;DP=6591;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5669,548,0:0,0,99,84
chr1	23885599	.	T	C	1359.3	PASS	AC=1;AF=0.621;AN=2;DP=4971;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,80:188:99:2130,0,2892:60,48,49,31
chr1	23886073	.	T	C	1596.56	PASS	AC=2;AF=0.656;AN=2;DP=1863;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2016,201,0:0,0,33,34
chr1	23886338	.	G	GC	36.44	PASS	AC=2;AF=0.908;AN=2;DP=319;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:312,27,0:0,0,2,7
chr1	23908176	.	G	T	627.21	PASS	AC=1;AF=0.5;AN=2;DP=256;MQ=60;set=variant15-variant18-variant28-variant31-variant32	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:655,0,625:7,16,10,18
chr1	23954126	.	T	TAC,TACAC	822.98	PASS	AC=2,0;AF=0.622,0.041;AN=2;DP=2361;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:75:80:3,1,36,35
chr1	23954527	.	T	TC	73.07	PASS	AC=1;AF=0.5;AN=2;DP=345;set=filterInvariant-filterInvariant8-filterInvariant12-filterInvariant15-filterInvariant26-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:87:87,0,414:0,21,0,8
chr1	23954528	.	T	C	64.52	PASS	AC=1;AF=0.5;AN=2;DP=177;FS=0;set=filterInvariant8-variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:224,0,347:1,18,0,14
chr1	23967159	.	G	A	3101.88	PASS	AC=2;AF=0.694;AN=2;DP=7779;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:7193,729,0:0,0,96,148
chr1	24018277	.	C	G	1292.27	PASS	AC=2;AF=1;AN=2;DP=4094;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3447,339,0:0,0,56,57
chr1	24021843	.	C	A	914.45	PASS	AC=2;AF=1;AN=2;DP=1578;FS=0;MQ=60;MQRankSum=-0.247;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,48:49:99:1393,136,0:0,1,22,26
chr1	24022437	.	A	G	1645.19	PASS	AC=2;AF=0.692;AN=2;DP=4402;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:5762,570,0:0,0,90,100
chr1	24069637	.	G	C	211.61	PASS	AC=2;AF=0.676;AN=2;DP=1037;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:850,81,0:0,0,15,12
chr1	24082269	.	CA	C,CAA,CAAA	49.52	PASS	AC=1,0,0;AF=0.421,0.053,0.026;AN=2;DP=562;MQ=60;set=variant-filterInvariant2-variant4-filterInvariant13-filterInvariant15-variant17-variant18-variant19-variant20-variant23-variant27-variant29-variant35-variant36-variant37-variant39-filterInvariant40-variant43-variant44	GT:DP:GQ:SB	0/1:49:77:31,9,6,3
chr1	24083649	.	T	C	887.1	PASS	AC=2;AF=0.658;AN=2;DP=1436;MQ=60;set=variant-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant29-variant31-variant34-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:2958,305,0:0,0,51,51
chr1	24086736	.	A	C	1238.22	PASS	AC=2;AF=0.75;AN=2;DP=65;FractionInformativeReads=1;MQ=60;MQRankSum=-0.991;ReadPosRankSum=1.104;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1266,120,0:0,0,19,21
chr1	24106510	.	A	AT	1140.85	PASS	AC=2;AF=0.932;AN=2;DP=1536;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1601,147,0:0,0,10,39
chr1	24128467	.	C	T	1490.3	PASS	AC=2;AF=0.932;AN=2;DP=2589;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2057,189,0:0,0,39,24
chr1	24129126	.	A	G	1504.08	PASS	AC=2;AF=0.586;AN=2;DP=4321;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,213:215:99:6401,594,0:2,0,88,125
chr1	24134462	.	C	T	274.58	PASS	AC=2;AF=0.942;AN=2;DP=549;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:50:580,50,0:0,0,15,2
chr1	24134721	.	T	C	4199.35	PASS	AC=2;AF=0.932;AN=2;DP=5979;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5604,535,0:0,0,88,91
chr1	24143932	.	A	G	1183.69	PASS	AC=2;AF=0.932;AN=2;DP=2179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1616,173,0:0,0,33,25
chr1	24151996	.	C	A	502.23	PASS	AC=2;AF=0.661;AN=2;DP=1091;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:94:1147,94,0:0,0,4,28
chr1	24171543	.	C	G	1055.42	PASS	AC=2;AF=0.645;AN=2;DP=1304;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1683,168,0:0,0,34,22
chr1	24172765	.	C	CT	446.27	PASS	AC=2;AF=0.565;AN=2;DP=651;set=variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-filterInvariant16-variant19-filterInvariant20-variant22-filterInvariant24-variant25-variant26-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,18:19:30:402,30,0:1,0,1,17
chr1	24180962	.	T	C	1899.89	PASS	AC=2;AF=0.586;AN=2;DP=3635;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4804,480,0:0,0,77,83
chr1	24192200	.	A	G	745.79	PASS	AC=2;AF=0.645;AN=2;DP=2226;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2340,221,0:0,0,34,40
chr1	24197408	.	T	C	732.76	PASS	AC=2;AF=1;AN=2;DP=689;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:547,45,0:0,0,4,11
chr1	24239588	.	C	CGGAGGT	187.73	PASS	AC=2;AF=0.984;AN=2;DP=115;FS=0;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:9:126,9,0:0,0,2,0
chr1	24239719	.	C	G	525.13	PASS	AC=2;AF=1;AN=2;DP=753;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0;ReadPosRankSum=0.29;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:542,51,0:0,0,10,7
chr1	24255844	.	C	CTATTAT,CTATTATTAT,CTAT,CTATTATTATTAT,CTATTATTATTATTATTAT,CTATTATTATTATTAT	50.3	PASS	AC=2,0,0,0,0,0;AF=0.647,0.059,0.118,0.059,0.059,0.059;AN=2;DP=173;FS=0;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant15-variant16-variant20-variant21-variant31-variant33-variant36-variant37-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	1/1:2:9:0,0,0,2
chr1	24286300	.	C	T	491.27	PASS	AC=2;AF=0.989;AN=2;DP=669;FractionInformativeReads=1;MQRankSum=-0.113;ReadPosRankSum=-0.453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:720,54,0:0,0,15,3
chr1	24287227	.	C	T	160.68	PASS	AC=2;AF=1;AN=2;DP=330;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:392,33,0:0,0,8,3
chr1	24287780	.	GCTT	G	424.79	PASS	AC=1;AF=0.662;AN=2;DP=421;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:430,0,263:2,4,5,6
chr1	24288404	.	A	G	40.5	PASS	AC=1;AF=0.703;AN=2;DP=218;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:141,0,73:0,2,0,4
chr1	24289891	.	ATGAATG	A	1225.53	PASS	AC=1;AF=0.639;AN=2;DP=3304;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,63:144:99:2347,0,5026:36,45,30,33
chr1	24291597	.	G	C	5111.05	PASS	AC=2;AF=0.989;AN=2;DP=6710;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:7118,616,0:0,0,91,115
chr1	24292140	.	G	A	11913.1	PASS	AC=2;AF=0.989;AN=2;DP=14896;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,398:398:99:12454,1193,0:0,0,186,212
chr1	24292830	.	A	G	2250.91	PASS	AC=2;AF=0.989;AN=2;DP=3331;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3945,283,0:0,0,42,52
chr1	24292854	.	T	C	683.43	PASS	AC=2;AF=0.681;AN=2;DP=2277;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3470,238,0:0,0,36,43
chr1	24294249	.	C	T	3760.37	PASS	AC=2;AF=0.989;AN=2;DP=5335;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5154,508,0:0,0,95,75
chr1	24294362	.	A	T	1547.22	PASS	AC=1;AF=0.639;AN=2;DP=3912;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,69:131:99:1840,0,1753:27,35,29,40
chr1	24294450	.	CAA	CA,CAAA,C	646.13	PASS	AC=1,0,1;AF=0.489,0.159,0.057;AN=2;DP=3360;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:78:99:4,5,29,40
chr1	24294627	.	C	T	253.62	PASS	AC=2;AF=0.681;AN=2;DP=896;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:970,96,0:0,0,11,21
chr1	24296853	.	G	GTTT,GTTTT,GT,GTT,GTTTTT,GTTTTTT	85.54	PASS	AC=0,0,0,2,0,0;AF=0.105,0.197,0.289,0.118,0.079,0.013;AN=2;DP=703;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:11:33:0,0,2,9
chr1	24298263	.	T	C	499.34	PASS	AC=2;AF=0.681;AN=2;DP=940;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1345,131,0:0,0,29,15
chr1	24301685	.	C	A	356.17	PASS	AC=1;AF=0.639;AN=2;DP=1176;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:344,0,617:4,15,2,10
chr1	24301721	.	T	C	287.99	PASS	AC=2;AF=0.989;AN=2;DP=759;FS=0;MQ=60;MQRankSum=0.362;ReadPosRankSum=1.359;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:758,57,0:0,0,2,17
chr1	24382484	.	C	A	607.64	PASS	AC=2;AF=0.786;AN=2;DP=3296;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3127,314,0:0,0,62,43
chr1	24383819	.	T	C	847.5	PASS	AC=2;AF=0.786;AN=2;DP=4113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3455,299,0:0,0,40,60
chr1	24387822	.	T	A	627.17	PASS	AC=1;AF=0.579;AN=2;DP=1219;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant11-variant12-variant15-variant17-variant20-variant25-variant26-variant27-variant29-variant32-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1159,0,1045:17,27,19,26
chr1	24388371	.	T	C	3011.56	PASS	AC=2;AF=0.932;AN=2;DP=3846;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2413,228,0:0,0,50,26
chr1	24388417	.	A	G	822.28	PASS	AC=1;AF=0.571;AN=2;DP=1881;MQ=60;set=variant2-variant4-variant5-variant8-variant11-variant12-variant15-variant20-variant25-variant26-variant29-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,60:144:99:1420,0,2194:52,32,38,22
chr1	24388679	.	T	C	625.58	PASS	AC=1;AF=0.563;AN=2;DP=1161;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant8-variant11-variant12-variant15-variant17-variant20-variant25-variant26-variant29-variant32-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,42:81:99:1226,0,962:16,23,13,29
chr1	24389509	.	GAA	G	240.28	PASS	AC=2;AF=0.726;AN=2;DP=836;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:810,54,0:0,0,13,5
chr1	24390731	.	C	T	684.97	PASS	AC=1;AF=0.581;AN=2;DP=1761;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,22:67:99:567,0,1086:20,25,7,15
chr1	24392600	.	G	A	1286.17	PASS	AC=1;AF=0.542;AN=2;DP=1266;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,78:165:99:1927,0,2310:37,50,40,38
chr1	24392671	.	T	C	1082.03	PASS	AC=1;AF=0.542;AN=2;DP=1256;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,80:150:99:1962,0,1781:28,42,37,43
chr1	24392796	.	C	T	650.22	PASS	AC=1;AF=0.5;AN=2;DP=647;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,53:82:99:1411,0,713:12,17,23,30
chr1	24393563	.	C	T	1472.61	PASS	AC=1;AF=0.542;AN=2;DP=1660;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,81:170:99:1866,0,1996:47,42,45,36
chr1	24393656	.	G	A	727.22	PASS	AC=1;AF=0.581;AN=2;DP=3419;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,54:125:99:1330,0,1787:30,41,24,30
chr1	24393729	.	G	A	427.26	PASS	AC=2;AF=0.645;AN=2;DP=1554;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1659,140,0:0,0,11,36
chr1	24394424	.	G	A	2482.76	PASS	AC=1;AF=0.542;AN=2;DP=2921;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:157,152:309:99:3407,0,3910:91,66,86,66
chr1	24394673	.	C	T	288.39	PASS	AC=1;AF=0.545;AN=2;DP=300;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:330,0,734:16,5,9,3
chr1	24394811	.	A	G	685.16	PASS	AC=1;AF=0.5;AN=2;DP=1002;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1211,0,1356:28,27,22,27
chr1	24395003	.	T	G	398.5	PASS	AC=2;AF=0.667;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:384,33,0:0,0,3,8
chr1	24400584	.	G	C	4777.94	PASS	AC=2;AF=1;AN=2;DP=6643;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5670,560,0:0,0,104,83
chr1	24400633	.	C	G	6102.71	PASS	AC=2;AF=1;AN=2;DP=8369;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6466,643,0:0,0,106,109
chr1	24406647	.	G	A	1594.7	PASS	AC=1;AF=0.591;AN=2;DP=6402;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,141:256:99:3365,0,2647:53,62,61,80
chr1	24408015	.	C	G	927.76	PASS	AC=1;AF=0.591;AN=2;DP=2535;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,44:79:99:1121,0,832:11,24,20,24
chr1	24408765	.	T	C	198.06	PASS	AC=1;AF=0.591;AN=2;DP=803;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:366,0,590:2,17,5,10
chr1	24409165	.	C	T	1027.51	PASS	AC=1;AF=0.5;AN=2;DP=1162;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,54:118:99:1228,0,1667:33,31,33,21
chr1	24409191	.	C	T	1194.45	PASS	AC=1;AF=0.581;AN=2;DP=4172;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,68:140:99:1592,0,1656:40,32,34,34
chr1	24410751	.	T	C	418.74	PASS	AC=1;AF=0.591;AN=2;DP=1182;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:468,0,376:5,8,11,8
chr1	24413159	.	T	C	1221.83	PASS	AC=1;AF=0.591;AN=2;DP=4408;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,83:143:99:2128,0,1295:36,24,53,30
chr1	24413427	.	T	G	227.51	PASS	AC=1;AF=0.576;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:392,0,486:0,13,2,11
chr1	24416059	.	T	C	2719.91	PASS	AC=2;AF=1;AN=2;DP=3838;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3123,309,0:0,0,61,42
chr1	24416070	.	G	C	701.16	PASS	AC=1;AF=0.622;AN=2;DP=3625;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,46:119:99:1093,0,1753:42,31,27,19
chr1	24416133	.	C	T	1664.21	PASS	AC=1;AF=0.5;AN=2;DP=1405;MQ=60;set=variant2-variant11-variant12-variant15-variant17-variant20-variant22-variant25-variant29-variant37	GT:AD:DP:GQ:PL:SB	0/1:70,108:178:99:2429,0,1702:40,30,55,53
chr1	24417415	.	T	C	6385.9	PASS	AC=1;AF=0.529;AN=2;DP=4176;MQ=60;set=variant2-variant10-variant12-variant15-variant17-variant20-variant21-variant25-variant27-variant29-variant30-variant33-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:140,137:277:99:3113,0,3375:63,77,63,74
chr1	24418768	.	T	C	905.93	PASS	AC=1;AF=0.661;AN=2;DP=3066;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,62:104:99:1639,0,930:18,24,23,39
chr1	24419496	.	A	G	1503.9	PASS	AC=1;AF=0.682;AN=2;DP=6169;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,129:249:99:3228,0,2680:68,52,80,49
chr1	24421334	.	G	T	775.5	PASS	AC=1;AF=0.597;AN=2;DP=2504;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1166,0,1137:30,11,31,14
chr1	24421474	.	G	A	1108.67	PASS	AC=1;AF=0.656;AN=2;DP=4499;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,96:175:99:2298,0,2003:35,44,44,52
chr1	24421643	.	T	C	68.12	PASS	AC=1;AF=0.667;AN=2;DP=542;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:377,0,490:2,12,2,10
chr1	24421875	.	C	T	282.7	PASS	AC=1;AF=0.597;AN=2;DP=1190;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:678,0,925:23,9,18,7
chr1	24421950	.	C	G	966.47	PASS	AC=1;AF=0.682;AN=2;DP=3376;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,54:119:99:1282,0,1601:34,31,32,22
chr1	24434717	.	T	TC	832.39	PASS	AC=2;AF=0.643;AN=2;DP=1082;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1242,120,0:0,0,7,33
chr1	24447116	.	C	T	1226.77	PASS	AC=1;AF=0.63;AN=2;DP=2647;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,64:120:99:1632,0,1368:29,27,35,29
chr1	24447214	.	G	A	890.6	PASS	AC=1;AF=0.765;AN=2;DP=2890;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,61:107:99:1615,0,1337:21,25,33,28
chr1	24447468	.	G	C	1721.12	PASS	AC=1;AF=0.63;AN=2;DP=3432;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,73:140:99:1905,0,1711:35,32,34,39
chr1	24448084	.	G	A	6635.87	PASS	AC=1;AF=0.659;AN=2;DP=6294;MQ=60;set=variant-variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:158,146:304:99:3360,0,3953:74,84,68,78
chr1	24450261	.	G	A	508.52	PASS	AC=1;AF=0.646;AN=2;DP=668;MQ=60;set=variant-variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:407,0,402:8,11,8,10
chr1	24460797	.	T	G	2986.92	PASS	AC=1;AF=0.73;AN=2;DP=4244;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,66:117:99:1663,0,1256:23,28,28,38
chr1	24464006	.	CT	CTT,CTTT,C	121.01	PASS	AC=0,0,1;AF=0.375,0.036,0.25;AN=2;DP=627;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant34-variant35-variant36-filterInvariant37-variant38-variant40-variant43-variant44	GT:DP:GQ:SB	0/3:14:48:1,5,1,7
chr1	24465113	.	C	T	1292.73	PASS	AC=1;AF=0.648;AN=2;DP=2993;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,70:136:99:1806,0,1638:32,34,29,41
chr1	24480612	.	CA	C	667.84	PASS	AC=2;AF=0.909;AN=2;DP=1066;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:714,78,0:0,0,18,8
chr1	24480864	.	G	A	6907.81	PASS	AC=2;AF=0.731;AN=2;DP=8215;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:7211,692,0:0,0,116,115
chr1	24480905	.	C	T	6189.69	PASS	AC=2;AF=0.725;AN=2;DP=7348;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6730,630,0:0,0,102,109
chr1	24481349	.	T	C	106.77	PASS	AC=2;AF=0.815;AN=2;DP=145;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,4,4
chr1	24481351	.	T	C	141.01	PASS	AC=2;AF=0.804;AN=2;DP=152;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,4,4
chr1	24481376	.	A	C	96.01	PASS	AC=2;AF=0.781;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:30:450,30,0:0,0,5,3
chr1	24481390	.	C	T	105.52	PASS	AC=2;AF=0.779;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:376,27,0:0,0,6,3
chr1	24481706	.	ATG	A	2085.19	PASS	AC=2;AF=0.909;AN=2;DP=3531;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3904,307,0:0,0,56,46
chr1	24481828	.	G	A	1808.17	PASS	AC=2;AF=0.725;AN=2;DP=3238;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3606,353,0:0,0,53,65
chr1	24481940	.	G	A	1132.14	PASS	AC=2;AF=0.817;AN=2;DP=2115;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,61:62:99:2026,174,0:1,0,24,37
chr1	24482059	.	C	T	886.95	PASS	AC=2;AF=0.725;AN=2;DP=1487;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1261,114,0:0,0,19,19
chr1	24482748	.	T	G	1935.99	PASS	AC=2;AF=1;AN=2;DP=3147;FS=0;MQ=60;MQRankSum=-0.279;ReadPosRankSum=0.335;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2952,282,0:0,0,47,47
chr1	24482992	.	C	G	1393.01	PASS	AC=2;AF=0.881;AN=2;DP=2741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2817,267,0:0,0,44,45
chr1	24483455	.	G	A	1719.73	PASS	AC=2;AF=1;AN=2;DP=2686;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1862,186,0:0,0,27,35
chr1	24483491	.	A	G	1452.54	PASS	AC=2;AF=1;AN=2;DP=2705;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1984,191,0:0,0,32,32
chr1	24484441	.	A	G	2048.28	PASS	AC=2;AF=1;AN=2;DP=3484;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2929,276,0:0,0,43,49
chr1	24485518	.	T	C	1309.03	PASS	AC=2;AF=1;AN=2;DP=2561;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2379,204,0:0,0,49,19
chr1	24485813	.	T	C	1071.74	PASS	AC=2;AF=1;AN=2;DP=1731;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.139;ReadPosRankSum=0.346;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1945,147,0:0,0,16,33
chr1	24485941	.	T	C	2916.41	PASS	AC=2;AF=0.829;AN=2;DP=4107;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3270,309,0:0,0,64,39
chr1	24486216	.	GT	G,GTTTTTTTTTTTTTGTTTT,GTTTTGTTTTTTTTGTTTT,GTTTT	162.83	PASS	AC=2,0,0,0;AF=0.716,0.011,0.102,0.011;AN=2;DP=1234;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:23:54:0,1,5,17
chr1	24487760	.	T	C	1137.31	PASS	AC=2;AF=1;AN=2;DP=1459;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1198,105,0:0,0,23,12
chr1	24495722	.	G	A	193.42	PASS	AC=1;AF=0.689;AN=2;DP=484;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:274,0,143:4,3,6,4
chr1	24507176	.	A	C	45.7	PASS	AC=1;AF=0.5;AN=2;DP=277;MQ=60;set=filterInvariant15-filterInvariant16-variant23-variant31-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,7:41:74:74,0,656:8,26,6,1
chr1	24507329	.	GC	G	1104.23	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=1.056;FractionInformativeReads=0.935;MQ=60;MQRankSum=-1.066;QD=17.81;ReadPosRankSum=1.979;SOR=0.987;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:22,36:58:99:1141,0,587:10,12,14,22
chr1	24513608	.	C	T	163.63	PASS	AC=1;AF=0.667;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant23-variant28-variant30-variant32-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:160,0,108:2,2,4,3
chr1	24513768	.	G	A	824.25	PASS	AC=2;AF=0.94;AN=2;DP=1616;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1274,139,0:0,0,21,26
chr1	24513924	.	AGGG	AG,AGG,A	229.11	PASS	AC=0,0,1;AF=0.45,0.175,0.175;AN=2;DP=203;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant26-variant30-variant32-variant35-variant36-variant37	GT:DP:GQ:SB	0/3:7:99:2,1,2,2
chr1	24513928	.	G	GGGGGA	263.95	PASS	AC=1;AF=0.775;AN=2;DP=167;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant15-variant16-variant18-variant22-variant24-variant27-variant29-variant31-variant34-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:87:87,0,159:2,2,2,1
chr1	24668667	.	C	G	2066.06	PASS	AC=1;AF=0.55;AN=2;DP=2723;MQ=60;set=variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant15-variant19-variant20-variant23-variant24-variant26-variant28-variant31-variant34-variant35-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,68:138:99:1709,0,1761:36,34,34,34
chr1	24668842	.	T	C	200.91	PASS	AC=1;AF=0.575;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant13-variant15-variant16-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:727,0,704:11,16,6,18
chr1	24671464	.	ACCCTCCACACCTGTGCC	A	232.99	PASS	AC=1;AF=0.635;AN=2;DP=406;set=variant-variant3-variant5-variant6-variant9-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:181,0,1222:1,7,2,5
chr1	24673866	.	A	G	1105.41	PASS	AC=1;AF=0.708;AN=2;DP=3501;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,56:96:99:1452,0,1007:28,12,35,21
chr1	24680915	.	C	T	1539.79	PASS	AC=1;AF=0.571;AN=2;DP=2654;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,54:127:99:1377,0,2061:34,39,26,28
chr1	24687653	.	T	C	246.22	PASS	AC=1;AF=0.778;AN=2;DP=664;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:383,0,293:2,8,1,10
chr1	24690414	.	A	G	679.36	PASS	AC=1;AF=0.778;AN=2;DP=739;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:375,0,528:13,3,10,2
chr1	24695749	.	C	G	1359.97	PASS	AC=1;AF=0.58;AN=2;DP=4062;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant32-variant33-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,81:171:99:2099,0,2142:47,43,44,37
chr1	24706113	.	G	A	414.04	PASS	AC=1;AF=0.63;AN=2;DP=1094;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:405,0,657:10,11,6,6
chr1	24706269	.	A	G	933.35	PASS	AC=1;AF=0.63;AN=2;DP=2473;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,44:100:99:1048,0,1489:31,25,22,22
chr1	24706292	.	T	C	970.3	PASS	AC=1;AF=0.615;AN=2;DP=2405;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1062,0,1360:29,28,24,21
chr1	24706410	.	T	C	507.24	PASS	AC=1;AF=0.63;AN=2;DP=968;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,19:45:99:434,0,707:7,19,7,12
chr1	24706438	.	A	AG	232.54	PASS	AC=1;AF=0.635;AN=2;DP=544;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:410,0,521:3,9,2,9
chr1	24706461	.	A	G	241.61	PASS	AC=1;AF=0.635;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:363,0,286:1,4,0,9
chr1	24718075	.	T	C	1789.37	PASS	AC=1;AF=0.609;AN=2;DP=3788;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:104,90:194:99:2212,0,2401:51,53,46,44
chr1	24727678	.	C	T	1582	PASS	AC=1;AF=0.781;AN=2;DP=1466;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:595,0,736:15,12,15,9
chr1	24746205	.	C	T	1627.34	PASS	AC=1;AF=0.604;AN=2;DP=4103;MQ=60;set=variant-variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:111,102:213:99:2497,0,2827:52,59,48,54
chr1	24768778	.	G	C	570.13	PASS	AC=1;AF=0.743;AN=2;DP=1166;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:547,0,581:9,15,11,11
chr1	24779855	.	T	C	835.83	PASS	AC=1;AF=0.614;AN=2;DP=851;MQ=60;set=variant-variant3-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:664,0,453:11,4,17,6
chr1	24780521	.	CTT	CTTT,CT,CTTTT,C	60.47	PASS	AC=1,0,0,0;AF=0.321,0.321,0.018,0.018;AN=2;DP=696;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant22-variant24-variant27-variant29-filterInvariant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:17:72:0,5,5,7
chr1	24781247	.	T	C	1097.43	PASS	AC=1;AF=0.694;AN=2;DP=1353;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:587,0,764:16,15,13,11
chr1	24784139	.	A	G	1192.91	PASS	AC=1;AF=0.614;AN=2;DP=1316;MQ=60;set=variant-variant3-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:1285,0,995:27,4,33,6
chr1	24784197	.	T	C	4434.29	PASS	AC=1;AF=0.694;AN=2;DP=3708;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,75:141:99:2054,0,1667:45,21,46,29
chr1	24785069	.	G	A	142.87	PASS	AC=1;AF=0.65;AN=2;DP=77;MQ=60;set=variant3-variant6-variant15-variant21-variant22-variant24-variant25-variant27-variant30-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:67:109,0,67:2,1,3,2
chr1	24785393	.	C	T	2559.76	PASS	AC=1;AF=0.614;AN=2;DP=3720;MQ=60;set=variant-variant3-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,77:153:99:1863,0,1864:33,43,44,33
chr1	24791915	.	GTA	G,GTATA	42.14	PASS	AC=1,0;AF=0.45,0.05;AN=2;DP=818;MQ=60;set=filterInvariant4-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant15-filterInvariant17-variant23-filterInvariant25-filterInvariant32	GT:DP:GQ:SB	0/1:96:99:51,33,9,3
chr1	24792617	.	T	A	9603.11	PASS	AC=1;AF=0.721;AN=2;DP=12137;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:256,210:466:99:4884,0,6207:130,126,104,106
chr1	24796838	.	A	G	321.28	PASS	AC=1;AF=0.605;AN=2;DP=485;MQ=60;set=variant-variant3-variant6-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,32:44:99:879,0,278:7,5,16,16
chr1	24798383	.	C	T	600.12	PASS	AC=1;AF=0.717;AN=2;DP=838;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:526,0,404:9,3,13,8
chr1	24798498	.	CTTT	CT,CTT,C	482.42	PASS	AC=2,0,0;AF=0.525,0.125,0.013;AN=2;DP=1455;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:38:86:1,0,15,22
chr1	24798659	.	C	T	588.36	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.138;QD=9.19;ReadPosRankSum=-2.449;SOR=0.726;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:617,0,1037:20,19,12,13
chr1	24840768	.	G	A	216.06	PASS	AC=2;AF=0.661;AN=2;DP=760;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:978,86,0:0,0,21,8
chr1	24857657	.	CTT	C,CT	52.77	PASS	AC=0,1;AF=0.167,0.333;AN=2;DP=40;MQ=60;set=variant5-filterInvariant15-variant16	GT:DP:GQ:SB	0/2:15:67:10,1,2,2
chr1	24859617	.	G	A	279.6	PASS	AC=1;AF=0.633;AN=2;DP=1027;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant21-variant23-variant29-variant32-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1250,0,1052:26,18,29,20
chr1	24859665	.	G	A	789.81	PASS	AC=1;AF=0.625;AN=2;DP=1580;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant21-variant23-variant29-variant32-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,67:123:99:1709,0,1274:28,28,33,34
chr1	24861704	.	G	A	635.24	PASS	AC=2;AF=0.607;AN=2;DP=2452;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3973,401,0:0,0,62,72
chr1	24862643	.	T	G	6476.97	PASS	AC=2;AF=0.638;AN=2;DP=10648;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,459:460:99:20441,1392,0:1,0,246,213
chr1	24862649	.	A	G	6662.06	PASS	AC=2;AF=0.638;AN=2;DP=10801;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,458:459:99:20304,1380,0:1,0,246,212
chr1	24863285	.	C	T	976.11	PASS	AC=1;AF=0.533;AN=2;DP=1088;MQ=60;set=variant7-variant10-variant13-variant15-variant16-variant18-variant24-variant27-variant30-variant31-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,42:89:99:1095,0,1230:28,19,28,14
chr1	24922056	.	T	C	835.15	PASS	AC=2;AF=0.611;AN=2;DP=733;MQ=60;set=variant5-variant15-variant16-variant17-variant22-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,97:99:99:2968,247,0:1,1,35,62
chr1	24922129	.	G	A	291.54	PASS	AC=2;AF=0.607;AN=2;DP=879;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,37:38:99:1351,103,0:0,1,6,31
chr1	24933487	.	CT	C,CTT	31.87	PASS	AC=1,0;AF=0.25,0.25;AN=2;DP=63;MQ=60;set=variant2-variant3-variant15-variant17-variant24-variant30	GT:DP:GQ:SB	0/1:10:68:1,5,2,2
chr1	24969973	.	ACC	AC,CCC,ACCC,A	266.73	PASS	AC=1,0,0,0;AF=0.382,0.147,0.059,0.029;AN=2;DP=985;MQ=60;set=variant8-variant13-filterInvariant15-filterInvariant6-filterInvariant5-variant16-variant18-variant26-variant28-variant29-variant32-variant36-filterInvariant37-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:40:77:8,23,1,8
chr1	24989762	.	G	T	1344.11	PASS	AC=2;AF=0.977;AN=2;DP=2280;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1665,159,0:0,0,21,32
chr1	25098245	.	T	C	810.95	PASS	AC=2;AF=0.744;AN=2;DP=1534;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1902,165,0:0,0,40,15
chr1	25098341	.	C	T	2107.84	PASS	AC=2;AF=0.744;AN=2;DP=5614;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:5958,591,0:0,0,108,90
chr1	25153692	.	G	A	3006.5	PASS	AC=2;AF=0.989;AN=2;DP=5343;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5505,572,0:0,0,86,105
chr1	25168124	.	G	C	2181.68	PASS	AC=2;AF=0.731;AN=2;DP=4256;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3933,384,0:0,0,74,54
chr1	25169875	.	C	A	12039.8	PASS	AC=2;AF=0.977;AN=2;DP=15793;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,394:394:99:12832,1179,0:0,0,147,247
chr1	25234062	.	T	G	169.45	PASS	AC=1;AF=0.611;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:52:363,0,52:0,2,2,9
chr1	25254317	.	C	T	434.65	PASS	AC=1;AF=0.705;AN=2;DP=1141;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,24:35:99:624,0,352:1,10,8,16
chr1	25256444	.	G	A	1345.61	PASS	AC=1;AF=0.692;AN=2;DP=2778;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1240,0,1410:18,36,14,36
chr1	25291010	.	A	T	1359.61	PASS	AC=1;AF=0.632;AN=2;DP=2526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,45:78:99:1061,0,886:21,12,25,20
chr1	25570550	.	A	AT	123.85	PASS	AC=2;AF=0.92;AN=2;DP=735;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,21:23:16:494,16,0:1,1,15,6
chr1	25666941	.	A	ATTGT	396.45	PASS	AC=1;AF=0.5;AN=2;DP=86;MQ=60;set=variant7-variant15	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:761,0,1323:17,9,14,4
chr1	25678002	.	TA	T	83.48	PASS	AC=2;AF=0.942;AN=2;DP=734;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:386,47,0:0,0,14,2
chr1	25678238	.	T	A	2114.48	PASS	AC=2;AF=1;AN=2;DP=3192;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3115,303,0:0,0,37,64
chr1	25683092	.	G	A	76.66	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant15-variant22-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:174,0,364:10,3,5,2
chr1	25688276	.	A	G	1399.64	PASS	AC=2;AF=0.706;AN=2;DP=1860;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1544,158,0:0,0,27,26
chr1	25747230	.	G	C	605.72	PASS	AC=2;AF=0.732;AN=2;DP=1320;set=variant-filterInvariant2-variant5-variant6-variant7-variant8-variant12-variant13-filterInvariant14-variant15-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant26-variant28-variant30-filterInvariant31-variant33-variant34-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:672,54,0:0,0,0,18
chr1	25755712	.	G	GT,GTTT	40.73	PASS	AC=2,0;AF=0.333,0.5;AN=2;DP=22;FS=0;MQRankSum=0.736;ReadPosRankSum=-0.736;set=variant15-variant20-variant21	GT:DP:GQ:SB	1/1:4:12:0,0,1,3
chr1	25780929	.	ATGTG	ATG,A	61.68	PASS	AC=2,0;AF=0.333,0.667;AN=2;DP=52;FS=0;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant15-variant16-variant24-variant28-variant32-variant35	GT:DP:GQ:SB	1/1:6:10:0,1,0,5
chr1	25870018	.	C	G	972.02	PASS	AC=2;AF=0.966;AN=2;DP=776;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:650,54,0:0,0,15,3
chr1	25880261	.	CAA	C,CA	44.75	PASS	AC=0,1;AF=0.2,0.35;AN=2;DP=355;set=variant-variant2-variant5-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant26-variant29-variant30-variant33-variant35-variant38-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:16:99:6,2,5,3
chr1	25893221	.	G	T	480.36	PASS	AC=2;AF=0.629;AN=2;DP=889;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1337,113,0:0,0,29,9
chr1	25893242	.	T	C	701.9	PASS	AC=2;AF=0.618;AN=2;DP=1378;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1968,132,0:0,0,31,13
chr1	25893243	.	G	A	701.9	PASS	AC=2;AF=0.6;AN=2;DP=1199;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1968,132,0:0,0,31,13
chr1	25893927	.	AT	A	390.39	PASS	AC=2;AF=0.597;AN=2;DP=2441;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2338,217,0:0,0,31,41
chr1	25894468	.	C	CTG	2363.07	PASS	AC=2;AF=0.989;AN=2;DP=2864;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2994,202,0:0,0,23,44
chr1	25894853	.	G	T	1262.4	PASS	AC=2;AF=0.625;AN=2;DP=3432;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4689,396,0:0,0,58,74
chr1	25894878	.	C	G	1401.57	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=0.672;FractionInformativeReads=1;MQ=60;MQRankSum=3.939;QD=11.21;ReadPosRankSum=-1.288;SOR=0.583;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:69,56:125:99:1430,0,1805:30,39,26,30
chr1	25895238	.	C	T	1002.59	PASS	AC=2;AF=0.641;AN=2;DP=2343;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2783,257,0:0,0,29,57
chr1	25895406	.	C	T	262.46	PASS	AC=2;AF=0.63;AN=2;DP=364;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:425,47,0:0,0,5,11
chr1	26085048	.	AG	A	1214.14	PASS	AC=1;AF=0.886;AN=2;DP=2798;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:725,0,943:31,5,22,7
chr1	26090072	.	A	G	2651.58	PASS	AC=1;AF=0.886;AN=2;DP=4375;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,54:129:99:1349,0,1765:34,41,25,29
chr1	26098107	.	G	A	1547.39	PASS	AC=1;AF=0.797;AN=2;DP=2280;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,40:83:99:947,0,1114:28,15,25,15
chr1	26098333	.	G	A	1034.2	PASS	AC=1;AF=0.875;AN=2;DP=2090;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,34:65:99:764,0,824:9,22,12,22
chr1	26107321	.	A	C	324.19	PASS	AC=1;AF=0.864;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:321,0,178:5,0,8,4
chr1	26107688	.	C	A	1416.13	PASS	AC=1;AF=0.852;AN=2;DP=3836;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,45:84:99:1167,0,943:21,18,23,22
chr1	26109237	.	A	G	2457.78	PASS	AC=1;AF=0.763;AN=2;DP=3450;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:1057,0,1517:14,38,10,30
chr1	26110065	.	A	G	1723.91	PASS	AC=1;AF=0.757;AN=2;DP=2534;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,40:65:99:1005,0,650:18,7,24,16
chr1	26110143	.	G	A	3728.27	PASS	AC=1;AF=0.763;AN=2;DP=5097;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,65:130:99:1540,0,1559:36,29,31,34
chr1	26111715	.	CTT	C,CT	82.86	PASS	AC=0,1;AF=0.03,0.833;AN=2;DP=331;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:11:47:0,3,3,5
chr1	26111743	.	G	A	359.75	PASS	AC=1;AF=0.855;AN=2;DP=209;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:65:186,0,65:0,2,3,4
chr1	26112130	.	C	T	538.85	PASS	AC=1;AF=0.5;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:603,0,357:7,6,10,13
chr1	26127020	.	G	A	635.57	PASS	AC=1;AF=0.86;AN=2;DP=704;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:36:210,0,36:1,1,6,4
chr1	26127425	.	G	A	114.75	PASS	AC=1;AF=0.638;AN=2;DP=672;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:408,0,425:11,2,8,3
chr1	26128307	.	C	T	636.35	PASS	AC=1;AF=0.881;AN=2;DP=710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:262,0,352:8,2,6,4
chr1	26128484	.	CT	C,CTT	120.94	PASS	AC=1,0;AF=0.48,0.02;AN=2;DP=1325;MQ=60;set=variant2-variant4-variant5-filterInvariant6-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant19-variant22-variant24-variant26-variant27-filterInvariant28-filterInvariant32-variant33-variant35-variant36-filterInvariant37-variant39-variant40-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:63:99:22,28,7,6
chr1	26131654	.	G	A	582.1	PASS	AC=1;AF=0.837;AN=2;DP=1764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:643,0,594:16,4,15,7
chr1	26138136	.	C	A	2464.28	PASS	AC=1;AF=0.833;AN=2;DP=11682;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,194:368:99:4350,0,4355:98,76,108,86
chr1	26138262	.	T	C	4947.17	PASS	AC=1;AF=0.869;AN=2;DP=7058;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,117:217:99:2976,0,2572:30,70,40,77
chr1	26139055	.	A	C	166.23	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=10.532;FractionInformativeReads=1;MQ=58.79;MQRankSum=-1.799;QD=10.39;ReadPosRankSum=-0.847;SOR=0.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:194,0,235:7,0,5,4
chr1	26139137	.	C	T	759.64	PASS	AC=1;AF=0.821;AN=2;DP=1390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:418,0,653:17,3,8,7
chr1	26139392	.	A	G	899.66	PASS	AC=1;AF=0.857;AN=2;DP=1594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,26:40:99:667,0,301:4,10,8,18
chr1	26139444	.	G	A	248.06	PASS	AC=1;AF=0.817;AN=2;DP=764;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:59:227,0,59:1,2,1,7
chr1	26139879	.	C	G	510.58	PASS	AC=1;AF=0.845;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:618,0,438:13,2,17,6
chr1	26139919	.	C	T	973.17	PASS	AC=1;AF=0.845;AN=2;DP=1522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:928,0,710:20,8,24,13
chr1	26140573	.	C	A	1896.39	PASS	AC=1;AF=0.821;AN=2;DP=4988;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,52:130:99:1309,0,1885:34,44,15,37
chr1	26143704	.	A	ATTTTG	591.25	PASS	AC=1;AF=0.857;AN=2;DP=1100;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:349,0,1113:9,10,4,5
chr1	26143931	.	T	C	337.32	PASS	AC=2;AF=0.872;AN=2;DP=346;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,5,1
chr1	26144437	.	TC	T	941.05	PASS	AC=1;AF=0.833;AN=2;DP=2024;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:524,0,885:18,17,13,10
chr1	26146392	.	C	G	834.75	PASS	AC=1;AF=0.857;AN=2;DP=1338;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:389,0,568:16,4,10,3
chr1	26146514	.	G	C	2192.7	PASS	AC=1;AF=0.7;AN=2;DP=1522;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:923,0,2180:20,19,16,11
chr1	26146539	.	A	C	2182.45	PASS	AC=1;AF=0.845;AN=2;DP=2763;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,26:66:99:912,0,2263:20,20,15,11
chr1	26146884	.	C	G	4132.53	PASS	AC=1;AF=0.845;AN=2;DP=4544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,54:123:99:1515,0,1964:26,43,20,34
chr1	26148011	.	G	A	1035.48	PASS	AC=1;AF=0.845;AN=2;DP=1711;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:948,0,443:12,8,24,6
chr1	26148941	.	T	C	391.35	PASS	AC=1;AF=0.872;AN=2;DP=498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:205,0,433:5,11,2,5
chr1	26149356	.	GCT	G	807.4	PASS	AC=1;AF=0.845;AN=2;DP=1918;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:998,0,949:16,7,16,10
chr1	26150023	.	C	T	2652.05	PASS	AC=1;AF=0.833;AN=2;DP=3847;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,64:131:99:1799,0,2044:39,28,39,25
chr1	26152666	.	T	C	2329.75	PASS	AC=1;AF=0.845;AN=2;DP=2235;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,25:62:99:718,0,1073:26,11,18,7
chr1	26152758	.	A	G	5017.82	PASS	AC=1;AF=0.845;AN=2;DP=6391;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,90:172:99:2308,0,2010:43,39,48,42
chr1	26158900	.	A	ACT	1379.27	PASS	AC=1;AF=0.845;AN=2;DP=1837;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:1169,0,809:11,11,16,14
chr1	26158962	.	A	G	1255.14	PASS	AC=1;AF=0.845;AN=2;DP=2013;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,38:58:99:925,0,468:9,11,19,19
chr1	26161037	.	G	C	222.07	PASS	AC=1;AF=0.926;AN=2;DP=185;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:109,0,142:4,0,3,0
chr1	26161086	.	A	G	182.78	PASS	AC=1;AF=0.903;AN=2;DP=262;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:82:82,0,154:4,0,2,2
chr1	26187778	.	G	C	2575.44	PASS	AC=2;AF=0.989;AN=2;DP=3997;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3212,338,0:0,0,59,54
chr1	26188238	.	G	A	308.04	PASS	AC=1;AF=0.717;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:171,0,339:2,9,1,7
chr1	26188625	.	G	T	97.67	PASS	AC=1;AF=0.661;AN=2;DP=573;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:466,0,158:5,1,11,5
chr1	26197063	.	C	T	53.54	PASS	AC=1;AF=0.708;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:117,0,76:2,0,3,0
chr1	26227608	.	CAAA	CAA,CA,C	181.59	PASS	AC=0,1,0;AF=0.18,0.2,0.14;AN=2;DP=960;set=variant-variant2-variant5-filterInvariant6-filterInvariant8-variant9-variant10-filterInvariant12-variant14-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant26-filterInvariant27-variant28-variant30-variant33-variant34-filterInvariant36-variant40-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:23:99:6,10,5,2
chr1	26232356	.	C	A	1477.73	PASS	AC=2;AF=0.661;AN=2;DP=1439;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,58:59:99:1731,165,0:0,1,37,21
chr1	26287300	.	CT	C,CTTT	496.49	PASS	AC=2,0;AF=0.838,0.013;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	1/1:27:80:0,0,7,20
chr1	26287563	.	T	C	256.96	PASS	AC=2;AF=0.893;AN=2;DP=465;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:283,27,0:0,0,4,5
chr1	26303505	.	CTTTTTTTT	C,CTTTTTTT,CTTTTTT,CTTTT	267.72	PASS	AC=1,0,0,0;AF=0.444,0.111,0.056,0.056;AN=2;DP=120;set=variant8-variant9-variant15-variant18-variant21-variant25-variant30-variant32-variant41	GT:DP:GQ:SB	0/1:8:72:1,2,0,5
chr1	26310213	.	T	C	388.48	PASS	AC=2;AF=0.742;AN=2;DP=1228;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1721,173,0:0,0,37,21
chr1	26310394	.	A	G	1793.04	PASS	AC=2;AF=0.742;AN=2;DP=3019;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3791,330,0:1,0,69,52
chr1	26310836	.	G	T	656.26	PASS	AC=2;AF=0.742;AN=2;DP=1295;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1463,150,0:0,0,31,19
chr1	26310867	.	G	A	263.18	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=1.214;FractionInformativeReads=1;MQ=60;MQRankSum=-0.357;QD=4.79;ReadPosRankSum=-1.71;SOR=1.008;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:41,14:55:99:291,0,1071:23,18,9,5
chr1	26314564	.	T	C	574.28	PASS	AC=2;AF=0.875;AN=2;DP=852;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1306,117,0:0,0,27,12
chr1	26324520	.	T	C	200.02	PASS	AC=2;AF=0.75;AN=2;DP=657;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:931,93,0:0,0,18,13
chr1	26324582	.	T	G	251.34	PASS	AC=2;AF=1;AN=2;DP=1141;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:929,93,0:0,0,16,15
chr1	26348474	.	A	G	2956.43	PASS	AC=2;AF=0.864;AN=2;DP=4345;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3284,315,0:0,0,50,55
chr1	26349967	.	C	T	647.02	PASS	AC=2;AF=0.661;AN=2;DP=2636;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2534,242,0:0,0,30,51
chr1	26357178	.	AC	ACC,A,ACCC	787.56	PASS	AC=1,0,0;AF=0.447,0.026,0.026;AN=2;DP=1172;MQ=60;set=variant3-variant4-variant7-variant8-variant11-variant14-variant15-variant18-variant21-variant22-variant25-variant29-variant32-variant33-variant34-variant37-variant38-variant39-variant41	GT:DP:GQ:SB	0/1:59:99:13,18,14,14
chr1	26357656	.	C	A	2577.79	PASS	AC=2;AF=0.656;AN=2;DP=6765;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:6806,692,0:0,0,110,122
chr1	26357855	.	A	G	1378.46	PASS	AC=2;AF=1;AN=2;DP=2855;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,89:90:99:2819,259,0:1,0,44,45
chr1	26358752	.	T	TA	2235.08	PASS	AC=2;AF=0.864;AN=2;DP=3728;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3084,267,0:0,0,65,22
chr1	26361549	.	G	C	1183.04	PASS	AC=1;AF=0.5;AN=2;DP=125;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:1211,0,1315:25,24,19,20
chr1	26362194	.	T	C	1135.36	PASS	AC=2;AF=0.647;AN=2;DP=3964;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:5143,464,0:0,0,74,81
chr1	26364249	.	C	T	441.26	PASS	AC=2;AF=0.652;AN=2;DP=1569;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2036,201,0:0,0,32,35
chr1	26364371	.	T	C	410.54	PASS	AC=2;AF=0.65;AN=2;DP=1649;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:2466,207,0:1,0,45,37
chr1	26365374	.	T	G	2206.39	PASS	AC=2;AF=0.65;AN=2;DP=4905;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6579,639,0:0,0,109,104
chr1	26365549	.	C	T	972.83	PASS	AC=2;AF=0.652;AN=2;DP=2998;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3331,284,0:0,0,43,52
chr1	26368787	.	C	T	49.76	PASS	AC=2;AF=0.712;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:489,39,0:0,0,9,4
chr1	26372144	.	A	G	850.02	PASS	AC=2;AF=0.864;AN=2;DP=2025;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1626,140,0:0,0,34,13
chr1	26372605	.	G	C	254.91	PASS	AC=2;AF=0.872;AN=2;DP=877;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1047,105,0:0,0,12,23
chr1	26377880	.	G	A	436.85	PASS	AC=2;AF=0.617;AN=2;DP=1495;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2090,189,0:0,0,38,25
chr1	26378002	.	C	T	1344.39	PASS	AC=2;AF=0.621;AN=2;DP=2398;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3715,316,0:0,0,72,34
chr1	26383645	.	CCAGGGGT	C	1555.08	PASS	AC=1;AF=0.5;AN=2;DP=1345;MQ=60;set=variant2-variant3-variant8-variant11-variant14-variant15-variant21-variant25-variant28-variant33-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,55:119:99:2110,0,5419:36,28,36,19
chr1	26387820	.	G	A	1130.37	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=2.667;FractionInformativeReads=1;MQ=60;MQRankSum=-1.031;QD=11.08;ReadPosRankSum=-0.067;SOR=0.45;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:53,49:102:99:1159,0,1548:18,35,20,29
chr1	26449335	.	CAA	C	3255.97	PASS	AC=1;AF=0.5;AN=2;DP=2479;MQ=60;set=variant-variant2-variant3-variant8-variant11-variant14-variant15-variant19-variant23-variant25-variant28-variant30-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:126,74:200:99:2686,0,5351:56,70,34,40
chr1	26449667	.	GT	GTT,G	122.97	PASS	AC=0,1;AF=0.067,0.433;AN=2;DP=1073;MQ=60;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant8-variant10-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant21-variant34-filterInvariant35-filterInvariant39-filterInvariant40-filterInvariant43	GT:DP:GQ:SB	0/2:77:99:22,42,4,9
chr1	26485517	.	G	C	346.92	PASS	AC=1;AF=0.563;AN=2;DP=753;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant19-variant23-variant28-variant30-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,16:51:99:357,0,772:18,17,7,9
chr1	26485743	.	T	C	215.37	PASS	AC=1;AF=0.625;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant21-variant22-variant28-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:73:79,0,73:0,2,1,2
chr1	26487940	.	A	G	4376.75	PASS	AC=1;AF=0.559;AN=2;DP=5987;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant19-variant23-variant28-variant30-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:208,181:389:99:4245,0,4897:94,114,87,94
chr1	26488019	.	G	A	2858.73	PASS	AC=1;AF=0.556;AN=2;DP=2136;MQ=60;set=variant4-variant12-variant15-variant21-variant22-variant28-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:148,124:272:99:3055,0,3825:61,87,54,70
chr1	26496455	.	C	T	2298.07	PASS	AC=1;AF=0.559;AN=2;DP=3074;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant19-variant23-variant28-variant30-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,109:248:99:2523,0,3356:65,74,50,59
chr1	26496651	.	T	C	1331.43	PASS	AC=1;AF=0.629;AN=2;DP=3554;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,64:135:99:1566,0,1741:23,48,21,43
chr1	26496870	.	A	G	628.08	PASS	AC=1;AF=0.65;AN=2;DP=1769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,23:57:99:646,0,933:21,13,17,6
chr1	26497340	.	A	C	1664.21	PASS	AC=2;AF=0.866;AN=2;DP=3441;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3925,390,0:0,0,64,66
chr1	26497626	.	C	G	979.02	PASS	AC=1;AF=0.629;AN=2;DP=2948;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,55:103:99:2090,0,1871:22,26,31,24
chr1	26497636	.	G	A	1166.86	PASS	AC=1;AF=0.525;AN=2;DP=1914;MQ=60;set=variant4-variant5-variant6-variant8-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant28-variant30-variant32-variant33-variant36-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:2118,0,2074:27,27,34,24
chr1	26498196	.	G	T	841.76	PASS	AC=1;AF=0.633;AN=2;DP=2764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,49:108:99:1045,0,1345:28,31,20,29
chr1	26498570	.	T	C	200.36	PASS	AC=1;AF=0.633;AN=2;DP=411;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:326,0,263:4,6,1,9
chr1	26504196	.	C	G	522.37	PASS	AC=1;AF=0.629;AN=2;DP=1177;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:427,0,724:6,19,3,12
chr1	26506753	.	A	G	326.55	PASS	AC=1;AF=0.5;AN=2;DP=522;MQ=60;set=variant4-variant12-variant15-variant21-variant22-variant28-variant33-variant34-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:513,0,637:17,9,14,6
chr1	26506790	.	A	G	837.99	PASS	AC=1;AF=0.5;AN=2;DP=768;MQ=60;set=variant4-variant12-variant15-variant21-variant22-variant28-variant33-variant34-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:42,30:72:99:885,0,961:26,16,18,12
chr1	26508293	.	G	A	1554.74	PASS	AC=1;AF=0.5;AN=2;DP=986;MQ=60;set=variant4-variant12-variant15-variant21-variant22-variant28-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:59,63:122:99:1557,0,1638:39,20,40,23
chr1	26508480	.	T	C	1635.39	PASS	AC=1;AF=0.5;AN=2;DP=828;MQ=60;set=variant4-variant12-variant15-variant21-variant22-variant28-variant33-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:47,33:80:99:880,0,1327:13,34,7,26
chr1	26511700	.	A	G	1643.18	PASS	AC=2;AF=0.672;AN=2;DP=6682;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,238:238:99:7136,714,0:0,0,105,133
chr1	26524706	.	A	G	4831.54	PASS	AC=1;AF=0.875;AN=2;DP=6289;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:90,75:165:99:2045,0,2351:52,38,37,38
chr1	26527783	.	G	A	169.9	PASS	AC=1;AF=0.529;AN=2;DP=350;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant22-variant23-variant28-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:479,0,292:7,2,12,5
chr1	26529121	.	G	C	1150.51	PASS	AC=1;AF=0.55;AN=2;DP=2885;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,62:121:99:1786,0,1543:27,32,29,33
chr1	26560945	.	C	G	587.59	PASS	AC=2;AF=0.919;AN=2;DP=864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:763,57,0:0,0,1,18
chr1	26570482	.	CAAAAAAAAAAA	C,CA,CAA,CAAAAAAAAAAAAA	458.96	PASS	AC=2,0,0,0;AF=0.743,0.027,0.014,0.014;AN=2;DP=541;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:13:39:0,0,11,2
chr1	26582091	.	G	A	1264.65	PASS	AC=2;AF=0.567;AN=2;DP=2702;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,202:202:99:5696,600,0:0,0,106,96
chr1	26597435	.	G	A	3720.03	PASS	AC=2;AF=0.919;AN=2;DP=5917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5201,516,0:0,0,87,85
chr1	26597673	.	G	A	464.72	PASS	AC=2;AF=0.667;AN=2;DP=1184;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1706,159,0:0,0,20,33
chr1	26601385	.	G	A	2357.09	PASS	AC=2;AF=0.757;AN=2;DP=2599;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2291,213,0:0,0,40,31
chr1	26603993	.	A	C	2305.86	PASS	AC=2;AF=0.919;AN=2;DP=3157;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2495,239,0:0,0,35,45
chr1	26608649	.	G	A	2068.28	PASS	AC=2;AF=0.567;AN=2;DP=2225;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5730,561,0:0,0,86,101
chr1	26608782	.	C	T	695.73	PASS	AC=2;AF=0.567;AN=2;DP=1449;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:4456,343,0:0,0,51,62
chr1	26608811	.	TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	T	1374.15	PASS	AC=1;AF=0.5;AN=2;DP=5812;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-variant10-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-filterInvariant21-variant24-variant26-filterInvariant29-variant31-filterInvariant32-variant33-filterInvariant35-variant36-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,31:155:99:771,0,4869:82,42,9,22
chr1	26608814	.	A	G	1616	PASS	AC=1;AF=0.57;AN=2;DP=4216;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,64:95:99:2675,0,936:9,22,41,23
chr1	26608825	.	TGGGGCCG	T	1848.41	PASS	AC=1;AF=0.5;AN=2;DP=4076;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,71:102:99:2840,0,924:9,22,47,24
chr1	26608835	.	ACCGGGACCGGGACTGGG	A	1849.13	PASS	AC=1;AF=0.5;AN=2;DP=4218;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,70:101:99:2820,0,927:9,22,46,24
chr1	26609259	.	C	T	8341.48	PASS	AC=2;AF=0.757;AN=2;DP=11310;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,317:318:99:9958,941,0:1,0,149,168
chr1	26609307	.	G	T	7500.24	PASS	AC=2;AF=0.919;AN=2;DP=11153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,301:301:99:9398,898,0:0,0,134,167
chr1	26610891	.	A	C	4571.87	PASS	AC=2;AF=0.919;AN=2;DP=6580;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,180:183:99:5493,490,0:2,1,91,89
chr1	26612042	.	A	G	1725.4	PASS	AC=2;AF=0.919;AN=2;DP=2265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1840,180,0:0,0,26,34
chr1	26620846	.	C	CA	796.1	PASS	AC=2;AF=0.919;AN=2;DP=2493;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2721,216,0:0,0,22,50
chr1	26627478	.	T	C	2730.53	PASS	AC=2;AF=0.795;AN=2;DP=8380;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,234:235:99:6955,657,0:1,0,125,109
chr1	26629465	.	G	C	1703.75	PASS	AC=2;AF=0.795;AN=2;DP=2787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2129,197,0:0,0,25,41
chr1	26633315	.	CGGGGT	C	177.59	PASS	AC=2;AF=1;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;QD=27.15;SOR=1.981;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:215,15,0:0,0,1,4
chr1	26633322	.	G	C	186.78	PASS	AC=2;AF=1;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;QD=24.1;SOR=1.981;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:215,15,0:0,0,1,4
chr1	26646726	.	A	G	4324.34	PASS	AC=2;AF=0.795;AN=2;DP=6308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:7107,481,0:0,0,74,84
chr1	26646730	.	A	G	4288.42	PASS	AC=2;AF=0.795;AN=2;DP=6240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:7143,484,0:0,0,74,87
chr1	26648551	.	G	C	5256.84	PASS	AC=2;AF=0.803;AN=2;DP=9150;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:8237,787,0:0,0,146,116
chr1	26654937	.	G	C	1222.36	PASS	AC=2;AF=0.845;AN=2;DP=2685;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2311,219,0:0,0,24,49
chr1	26662774	.	C	T	2688.6	PASS	AC=2;AF=0.845;AN=2;DP=5165;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4904,462,0:0,0,86,69
chr1	26662904	.	C	T	2362.7	PASS	AC=2;AF=0.567;AN=2;DP=2174;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,172:173:99:5375,507,0:1,0,74,98
chr1	26664219	.	T	C	333.47	PASS	AC=2;AF=0.567;AN=2;DP=509;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1241,122,0:0,0,13,28
chr1	26670444	.	G	T	1018.28	PASS	AC=2;AF=0.571;AN=2;DP=1605;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3741,372,0:0,0,67,58
chr1	26670609	.	C	T	2715.71	PASS	AC=2;AF=0.571;AN=2;DP=2888;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:7311,694,0:0,0,129,103
chr1	26671522	.	GAAATGAGGCATCA	G	2611.52	PASS	AC=1;AF=0.628;AN=2;DP=8105;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,42:59:99:878,0,159:7,10,16,26
chr1	26671538	.	AGCAC	A	2388.33	PASS	AC=1;AF=0.634;AN=2;DP=8148;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,42:59:99:878,0,159:7,10,16,26
chr1	26671544	.	GGGGCCCTTCACGACCTCTTTCCAGGTGGGGAACA	G	2283.09	PASS	AC=1;AF=0.641;AN=2;DP=8518;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,42:60:99:875,0,180:7,11,16,26
chr1	26689659	.	G	A	131.85	PASS	AC=2;AF=0.559;AN=2;DP=1109;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant16-variant19-variant22-variant23-variant26-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2735,273,0:0,0,35,56
chr1	26691174	.	C	A	2782.3	PASS	AC=2;AF=0.559;AN=2;DP=4197;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant16-variant19-variant22-variant23-variant26-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,291:293:99:8578,821,0:0,2,131,160
chr1	26700795	.	T	C	815.51	PASS	AC=2;AF=1;AN=2;DP=2736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1899,199,0:0,0,35,32
chr1	26737143	.	G	A	79.46	PASS	AC=1;AF=0.621;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:459,0,425:10,1,12,1
chr1	26752992	.	T	C	1120.14	PASS	AC=2;AF=0.83;AN=2;DP=3614;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2910,281,0:0,0,30,64
chr1	26753942	.	T	C	173.13	PASS	AC=2;AF=0.652;AN=2;DP=489;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:448,39,0:0,0,7,6
chr1	26758748	.	G	A	714.49	PASS	AC=2;AF=0.83;AN=2;DP=1279;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,40:42:76:1116,76,0:1,1,26,14
chr1	26769061	.	A	G	556.18	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.447;QD=15.89;ReadPosRankSum=0.579;SOR=0.922;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:584,0,518:12,4,15,4
chr1	26769543	.	C	CTTTTTT	417.36	PASS	AC=2;AF=0.854;AN=2;DP=486;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:698,48,0:0,0,3,13
chr1	26774684	.	CTT	C,CT	121.09	PASS	AC=0,1;AF=0.188,0.563;AN=2;DP=95;FS=0;MQ=60;set=variant9-variant11-variant14-variant15-variant27-variant30-variant32-variant40	GT:DP:GQ:SB	0/2:8:41:1,2,2,3
chr1	26796922	.	G	C	597.98	PASS	AC=2;AF=0.528;AN=2;DP=488;FractionInformativeReads=1;set=variant4-variant5-variant6-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant27-variant32-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1028,84,0:0,0,17,11
chr1	26856462	.	T	G	1105.23	PASS	AC=2;AF=0.943;AN=2;DP=1542;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:838,87,0:0,0,17,12
chr1	26857954	.	T	A	420.52	PASS	AC=2;AF=0.943;AN=2;DP=684;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:65:644,65,0:0,0,7,15
chr1	26869610	.	G	A	1236.93	PASS	AC=1;AF=0.756;AN=2;DP=4245;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,56:108:99:1284,0,1311:30,22,35,21
chr1	26879792	.	T	C	329.76	PASS	AC=1;AF=0.756;AN=2;DP=742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:333,0,536:14,6,8,7
chr1	26879920	.	T	C	1073.75	PASS	AC=2;AF=1;AN=2;DP=3067;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2681,273,0:0,0,47,44
chr1	26881565	.	AG	A	202.38	PASS	AC=1;AF=0.563;AN=2;DP=764;MQ=60;set=variant-variant2-variant4-variant8-variant12-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:408,0,586:14,7,12,3
chr1	26883511	.	A	C	1197.83	PASS	AC=1;AF=0.5;AN=2;DP=2460;MQ=60;set=variant4-variant5-variant6-variant13-variant14-variant15-variant18-variant22-variant24-variant26-variant27-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:1427,0,1713:38,30,30,33
chr1	26900735	.	C	G	3020.31	PASS	AC=1;AF=0.761;AN=2;DP=5136;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,70:138:99:1858,0,1661:31,37,28,42
chr1	26901090	.	C	T	2008.95	PASS	AC=1;AF=0.705;AN=2;DP=2563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1159,0,913:16,18,25,16
chr1	27107650	.	TAA	TA,T,TAAAA	499.27	PASS	AC=1,0,0;AF=0.431,0.056,0.014;AN=2;DP=2808;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:87:99:26,24,22,15
chr1	27190821	.	GGTGTGTGTGT	GGTGTGTGT,GGTGTGT,G,GGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGT,GGTGT	1301.51	PASS	AC=0,0,0,0,0,1,0,0,0;AF=0.063,0.25,0.013,0.2,0.013,0.063,0.013,0.025,0.025;AN=2;DP=2542;set=variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/6:34:99:11,9,6,8
chr1	27210721	.	T	C	3406.38	PASS	AC=1;AF=0.795;AN=2;DP=4056;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,59:133:99:1564,0,1911:36,38,30,29
chr1	27238150	.	A	G	1278.77	PASS	AC=1;AF=0.8;AN=2;DP=2720;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,60:101:99:1456,0,895:22,19,32,28
chr1	27320356	.	T	C	1808.25	PASS	AC=2;AF=1;AN=2;DP=3028;FS=0;MQ=60;MQRankSum=0.544;ReadPosRankSum=1.336;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2826,276,0:0,0,44,48
chr1	27426219	.	A	G	717.44	PASS	AC=1;AF=0.571;AN=2;DP=1348;MQ=60;set=variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant32-variant34-variant35-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:39,45:84:99:1222,0,964:23,16,25,20
chr1	27426796	.	T	C	3762.4	PASS	AC=2;AF=0.989;AN=2;DP=6150;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5277,501,0:0,0,87,80
chr1	27427041	.	T	C	2085.08	PASS	AC=2;AF=0.989;AN=2;DP=6458;MQ=60;MQRankSum=-0.886;ReadPosRankSum=1.358;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4408,417,0:0,0,66,73
chr1	27428321	.	T	C	1356.95	PASS	AC=1;AF=0.571;AN=2;DP=2037;MQ=60;set=variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant32-variant34-variant35-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:46,68:114:99:1790,0,1123:24,22,35,33
chr1	27435976	.	C	G	1099.63	PASS	AC=1;AF=0.571;AN=2;DP=1225;MQ=60;set=variant4-variant6-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant32-variant34-variant35-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:21,34:55:99:828,0,487:12,9,22,12
chr1	27480757	.	A	G	1317.27	PASS	AC=1;AF=0.545;AN=2;DP=2397;MQ=60;set=variant4-variant8-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:71,48:119:99:1159,0,1888:39,32,27,21
chr1	27561316	.	C	G	275.37	PASS	AC=1;AF=0.5;AN=2;DP=74;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:426,0,241:5,5,8,9
chr1	27561359	.	T	C	859.65	PASS	AC=2;AF=0.989;AN=2;DP=1243;FractionInformativeReads=1;MQ=60;MQRankSum=-0.411;ReadPosRankSum=3.388;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1005,99,0:0,0,17,16
chr1	27589931	.	A	AT	52.69	PASS	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=0.667;MQ=60;QD=17.56;SOR=2.303;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	27589936	.	A	T	61.73	PASS	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=60;QD=30.86;SOR=2.303;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	27609980	.	T	G	2588.78	PASS	AC=2;AF=0.989;AN=2;DP=5532;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:4855,474,0:0,0,79,82
chr1	27610069	.	C	T	2268.43	PASS	AC=1;AF=0.802;AN=2;DP=3091;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,59:106:99:1522,0,1251:18,29,21,38
chr1	27618971	.	C	A	641.56	PASS	AC=1;AF=0.5;AN=2;DP=155;MQ=60;set=variant4-variant15	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:722,0,962:14,22,10,21
chr1	27627974	.	G	A	968.57	PASS	AC=1;AF=0.5;AN=2;DP=399;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:81,58:139:99:1407,0,2071:44,37,29,29
chr1	27658368	.	CCTT	C	1006.68	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:1199,0,652:17,0,26,4
chr1	27660340	.	T	C	351.64	PASS	AC=1;AF=0.633;AN=2;DP=629;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:472,0,172:5,0,11,3
chr1	27660568	.	G	A	2104.43	PASS	AC=1;AF=0.629;AN=2;DP=7183;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,117:263:99:2765,0,3984:86,60,69,48
chr1	27661037	.	T	C	435.02	PASS	AC=1;AF=0.607;AN=2;DP=1361;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,33:52:99:916,0,564:11,8,15,18
chr1	27661755	.	T	TGTA	85.69	PASS	AC=1;AF=0.629;AN=2;DP=700;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:417,0,784:13,2,8,3
chr1	27662235	.	G	T	324.49	PASS	AC=1;AF=0.629;AN=2;DP=1229;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:625,0,484:8,9,9,13
chr1	27662666	.	A	G	857.56	PASS	AC=1;AF=0.607;AN=2;DP=3207;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1425,0,1486:29,38,30,28
chr1	27668748	.	A	G	406.79	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:379,0,238:1,7,3,7
chr1	27671698	.	G	A	1474.13	PASS	AC=1;AF=0.5;AN=2;DP=337;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:58,69:127:99:1540,0,1375:34,24,36,33
chr1	27673679	.	A	G	327.07	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:257,0,172:5,1,7,3
chr1	27675700	.	C	G	591.75	PASS	AC=1;AF=0.5;AN=2;DP=86;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:421,0,379:3,8,3,9
chr1	27677930	.	G	A	1334.26	PASS	AC=1;AF=0.5;AN=2;DP=431;MQ=60;set=variant4-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:67,87:154:99:1995,0,1645:33,34,44,43
chr1	27679692	.	A	G	1885.48	PASS	AC=2;AF=0.732;AN=2;DP=2464;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3246,258,0:0,0,69,17
chr1	27679797	.	A	G	5478.71	PASS	AC=2;AF=0.732;AN=2;DP=8804;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,257:257:99:7711,769,0:0,0,138,119
chr1	27680292	.	A	G	1753.76	PASS	AC=1;AF=0.775;AN=2;DP=3691;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,38:98:99:944,0,1365:31,29,24,14
chr1	27681534	.	A	G	97.67	PASS	AC=2;AF=0.76;AN=2;DP=170;FS=0;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:156,12,0:0,0,3,1
chr1	27681589	.	CA	C	127.53	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:360,0,225:6,0,5,4
chr1	27681592	.	A	G	136.58	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:360,0,225:6,0,5,4
chr1	27682440	.	T	TG	868.77	PASS	AC=2;AF=0.607;AN=2;DP=2631;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:5198,388,0:0,0,58,70
chr1	27682481	.	G	A	620.47	PASS	AC=2;AF=0.587;AN=2;DP=2295;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant31-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3980,368,0:0,0,63,60
chr1	27682754	.	A	G	1060.21	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=6.26;FractionInformativeReads=1;MQ=58.37;MQRankSum=0.292;QD=14.14;ReadPosRankSum=1.11;SOR=1.421;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:1088,0,1250:23,17,25,10
chr1	27686063	.	G	C	3024.46	PASS	AC=2;AF=0.977;AN=2;DP=4652;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3320,315,0:0,0,49,56
chr1	27687466	.	G	T	1292.5	PASS	AC=1;AF=0.523;AN=2;DP=1974;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant31-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1066,0,1329:24,22,20,24
chr1	27689763	.	C	T	465.36	PASS	AC=2;AF=0.543;AN=2;DP=876;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant31-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1704,138,0:0,0,34,12
chr1	27690359	.	T	C	368.95	PASS	AC=2;AF=0.56;AN=2;DP=1302;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1609,150,0:0,0,35,15
chr1	27690644	.	A	G	1562.28	PASS	AC=2;AF=0.611;AN=2;DP=3983;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,177:179:99:5769,503,0:1,1,79,98
chr1	27696011	.	C	T	2709.81	PASS	AC=2;AF=1;AN=2;DP=3693;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3581,280,0:0,0,12,81
chr1	27696837	.	G	T	98.73	PASS	AC=2;AF=0.55;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:716,63,0:0,0,15,6
chr1	27755511	.	CTT	C,CT	1246.27	PASS	AC=0,1;AF=0.045,0.455;AN=2;DP=10847;set=Intersection	GT:DP:GQ:SB	0/2:265:99:42,72,57,94
chr1	27860794	.	G	T	116.23	PASS	AC=1;AF=0.5;AN=2;DP=470;set=filterInvariant5-variant8-filterInvariant15-filterInvariant16-filterInvariant24-filterInvariant27-filterInvariant34-variant36-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:38,16:54:99:135,0,861:15,23,15,1
chr1	27875824	.	C	T	8603.46	PASS	AC=2;AF=1;AN=2;DP=12884;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,366:366:99:10960,1094,0:0,0,196,170
chr1	27876482	.	C	A	2158.5	PASS	AC=1;AF=0.743;AN=2;DP=6213;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,93:192:99:2321,0,2547:43,56,44,49
chr1	27876593	.	C	T	1940.03	PASS	AC=1;AF=0.5;AN=2;DP=157;FS=4.69;FractionInformativeReads=1;MQ=60;MQRankSum=-0.174;QD=12.36;ReadPosRankSum=1.216;SOR=0.868;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:78,79:157:99:1968,0,2012:37,41,44,35
chr1	27944000	.	T	A	1371.95	PASS	AC=2;AF=0.898;AN=2;DP=2144;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2057,180,0:0,0,19,41
chr1	27995077	.	G	T	1730.33	PASS	AC=2;AF=0.92;AN=2;DP=3689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:4,91:95:99:2611,212,0:3,1,33,58
chr1	28086955	.	C	A	2117.16	PASS	AC=2;AF=0.93;AN=2;DP=2867;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2638,260,0:0,0,46,41
chr1	28087457	.	GTTT	GTT,GT,G,GTTTT	35.19	PASS	AC=1,0,0,0;AF=0.35,0.05,0.05,0.1;AN=2;DP=99;MQ=60;set=variant2-variant5-variant15-variant20-variant22-variant23-variant29-variant35-variant42-variant43	GT:DP:GQ:SB	0/1:7:23:2,1,3,1
chr1	28087772	.	GA	G	6782.42	PASS	AC=2;AF=0.966;AN=2;DP=8450;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,248:250:99:7381,694,0:1,1,139,109
chr1	28088475	.	CAA	CAAAAA,C,CA	54.91	PASS	AC=0,1,0;AF=0.3,0.1,0.1;AN=2;DP=80;MQ=60;set=variant10-variant15-variant17-variant32-variant41	GT:DP:GQ:SB	0/2:17:99:9,3,2,3
chr1	28157176	.	GA	G	224.13	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;MQ=60;set=variant-variant15	GT:AD:DP:GQ:PL:SB	0/1:32,11:43:99:203,0,703:21,11,7,4
chr1	28206588	.	T	C	1105.36	PASS	AC=1;AF=0.589;AN=2;DP=3630;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,68:152:99:1842,0,2166:28,56,20,48
chr1	28209305	.	A	G	682.54	PASS	AC=1;AF=0.675;AN=2;DP=3972;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,68:146:99:1775,0,1854:39,39,35,33
chr1	28209362	.	T	C	837.94	PASS	AC=1;AF=0.675;AN=2;DP=4190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,70:144:99:2672,0,3257:40,34,36,34
chr1	28209366	.	A	G	837.94	PASS	AC=1;AF=0.675;AN=2;DP=4186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,68:138:99:2678,0,3192:39,31,34,34
chr1	28261593	.	T	C	1874.84	PASS	AC=1;AF=0.656;AN=2;DP=2969;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,44:110:99:1668,0,2767:34,32,25,19
chr1	28261600	.	A	C	1901.59	PASS	AC=1;AF=0.621;AN=2;DP=2744;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,47:118:99:1716,0,2926:37,34,26,21
chr1	28261658	.	T	TG	1368.62	PASS	AC=1;AF=0.672;AN=2;DP=3094;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,42:122:99:1196,0,2629:41,39,20,22
chr1	28261902	.	C	A	229.52	PASS	AC=1;AF=0.656;AN=2;DP=615;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:286,0,259:2,7,2,7
chr1	28268573	.	C	T	566.33	PASS	AC=2;AF=0.756;AN=2;DP=1255;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:877,74,0:0,0,21,4
chr1	28268706	.	G	A	950.48	PASS	AC=1;AF=0.636;AN=2;DP=2909;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,32:82:99:790,0,1363:24,26,18,14
chr1	28268829	.	T	TC	713.2	PASS	AC=1;AF=0.526;AN=2;DP=1098;MQ=60;set=variant-variant3-variant4-variant11-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant27-variant31-variant32-variant35-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:593,0,483:9,12,11,16
chr1	28268833	.	C	CG	604.28	PASS	AC=1;AF=0.636;AN=2;DP=1708;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:519,0,590:11,16,9,13
chr1	28268835	.	A	C	722.29	PASS	AC=2;AF=0.756;AN=2;DP=2116;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2184,147,0:0,0,20,29
chr1	28280012	.	G	C	308.96	PASS	AC=1;AF=0.528;AN=2;DP=436;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant27-variant31-variant32-variant35-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:501,0,313:2,8,4,13
chr1	28282206	.	C	T	2110.43	PASS	AC=1;AF=0.568;AN=2;DP=1855;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant27-variant31-variant32-variant34-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:1143,0,1071:23,18,27,15
chr1	28282819	.	T	C	2643.43	PASS	AC=2;AF=0.955;AN=2;DP=5526;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4652,446,0:0,0,70,79
chr1	28285534	.	T	C	4698.08	PASS	AC=2;AF=0.955;AN=2;DP=8355;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:6203,587,0:0,0,114,82
chr1	28285632	.	A	T	8723.34	PASS	AC=2;AF=0.955;AN=2;DP=14084;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,343:343:99:10117,1026,0:0,0,161,182
chr1	28286498	.	C	A	301.19	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.572;QD=6.41;ReadPosRankSum=-0.572;SOR=0.634;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:31,16:47:99:329,0,805:16,15,8,8
chr1	28290231	.	C	G	1293.23	PASS	AC=2;AF=0.943;AN=2;DP=2323;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2209,201,0:0,0,21,46
chr1	28298951	.	C	T	1601.32	PASS	AC=1;AF=0.545;AN=2;DP=1165;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant29-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:761,0,1101:21,15,14,12
chr1	28300079	.	T	A	608.24	PASS	AC=1;AF=0.633;AN=2;DP=1285;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,30:55:99:848,0,643:11,14,15,15
chr1	28301217	.	C	T	1547.23	PASS	AC=1;AF=0.553;AN=2;DP=836;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant32-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:888,0,957:9,24,7,23
chr1	28339933	.	A	T	467.91	PASS	AC=1;AF=0.556;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant32-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:273,0,146:0,4,0,7
chr1	28369279	.	G	A	1049.83	PASS	AC=1;AF=0.694;AN=2;DP=787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:395,0,406:2,11,5,10
chr1	28374815	.	C	T	1853.01	PASS	AC=1;AF=0.553;AN=2;DP=999;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant32-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:819,0,819:21,10,18,11
chr1	28422847	.	C	T	5050.94	PASS	AC=1;AF=0.694;AN=2;DP=6538;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,106:203:99:2473,0,2510:56,41,59,47
chr1	28474146	.	A	G	1260.08	PASS	AC=1;AF=0.5;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:82,82:164:99:1893,0,1933:39,43,40,42
chr1	28475299	.	C	T	90.21	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:50:121,0,50:1,1,3,1
chr1	28520161	.	C	T	177.99	PASS	AC=1;AF=0.611;AN=2;DP=469;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,21:28:99:518,0,169:5,2,11,10
chr1	28527011	.	A	G	830.33	PASS	AC=1;AF=0.607;AN=2;DP=2416;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,47:121:99:1045,0,1876:38,36,23,24
chr1	28536707	.	T	C	384.87	PASS	AC=1;AF=0.5;AN=2;DP=313;MQ=60;set=variant6-variant9-variant15-variant16-variant25-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:412,0,382:3,11,5,9
chr1	28537245	.	C	T	863.16	PASS	AC=1;AF=0.5;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant15-variant16-variant25-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,52:83:99:1445,0,840:11,20,16,36
chr1	28555426	.	G	A	160.39	PASS	AC=1;AF=0.636;AN=2;DP=251;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant10-variant13-variant15-variant16-variant20-variant23-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:100,0,266:7,2,3,1
chr1	28563759	.	G	A	725.94	PASS	AC=1;AF=0.5;AN=2;DP=585;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant15-variant16-variant25-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:911,0,1227:23,22,15,21
chr1	28564252	.	A	G	978.19	PASS	AC=1;AF=0.607;AN=2;DP=2109;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1315,0,1299:27,19,30,19
chr1	28564654	.	A	C	1115.26	PASS	AC=1;AF=0.5;AN=2;DP=619;MQ=60;set=variant6-variant9-variant15-variant16-variant25-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:948,0,1307:9,34,4,27
chr1	28573423	.	C	CGATT	81.87	PASS	AC=1;AF=0.5;AN=2;DP=177;MQ=60;set=variant6-variant9-variant15-variant16-variant25-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,17:22:99:698,0,196:0,5,3,14
chr1	28597962	.	A	G	197.67	PASS	AC=1;AF=0.5;AN=2;DP=20;FractionInformativeReads=1;MQ=60;set=variant15-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:226,0,132:4,1,6,0
chr1	28598020	.	T	C	362.45	PASS	AC=1;AF=0.611;AN=2;DP=490;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:423,0,309:9,3,11,5
chr1	28655791	.	CTT	CTTTTTTT,CTTTTTTTT,C,CTTTTT	97.57	PASS	AC=0,0,0,1;AF=0.143,0.143,0.214,0.214;AN=2;DP=45;FS=0;MQRankSum=0.736;set=variant6-variant11-variant12-variant15-variant21-variant25-variant31	GT:DP:GQ:SB	0/4:3:31:0,1,1,1
chr1	28696091	.	C	A	456.51	PASS	AC=1;AF=0.565;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant25-variant29-variant30-variant31-variant35-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,42:67:99:1045,0,590:16,9,25,17
chr1	28696392	.	C	G	2552.91	PASS	AC=1;AF=0.565;AN=2;DP=5796;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant25-variant29-variant30-variant31-variant35-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:169,134:303:99:3160,0,4169:72,97,55,79
chr1	28733993	.	G	T	2106.9	PASS	AC=1;AF=0.565;AN=2;DP=2667;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant25-variant29-variant30-variant31-variant35-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,66:155:99:1437,0,2241:39,50,28,38
chr1	28764551	.	C	CA	90.28	PASS	AC=1;AF=0.615;AN=2;DP=120;FS=0;FractionInformativeReads=1;set=variant4-variant6-variant9-variant13-variant15-variant16-variant22-variant24-variant25-variant31-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:197,0,198:5,1,6,0
chr1	28764682	.	GT	G	1181.14	PASS	AC=1;AF=0.5;AN=2;DP=208;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:1218,0,1306:25,13,26,10
chr1	28783644	.	C	T	634.52	PASS	AC=1;AF=0.5;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:50,25:75:99:597,0,1427:36,14,17,8
chr1	28793041	.	G	A	2266.14	PASS	AC=1;AF=0.5;AN=2;DP=421;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:66,94:160:99:2294,0,1690:27,39,43,51
chr1	28800277	.	C	A	1176.61	PASS	AC=1;AF=0.5;AN=2;DP=543;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:93,67:160:99:1600,0,2305:45,48,32,35
chr1	28802581	.	A	G	254.85	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:641,0,618:13,9,16,4
chr1	28807191	.	T	G	404.36	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:433,0,498:5,13,5,11
chr1	28817351	.	G	A	109.43	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:69:69,0,142:4,0,2,0
chr1	28817597	.	A	G	574.99	PASS	AC=1;AF=0.565;AN=2;DP=1438;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant25-variant29-variant30-variant31-variant35-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,53:101:99:1311,0,1241:13,35,18,35
chr1	28818151	.	G	A	1074.45	PASS	AC=1;AF=0.5;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:65,43:108:99:1103,0,1748:32,33,23,20
chr1	28818418	.	T	C	236.2	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:264,0,275:0,7,1,7
chr1	28819275	.	G	A	61.77	PASS	AC=1;AF=0.667;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:33:82,0,33:0,1,2,1
chr1	28819356	.	T	G	193.4	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.578;QD=10.74;ReadPosRankSum=-1.555;SOR=0.859;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:222,0,278:7,3,6,2
chr1	28822928	.	G	A	692.63	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=2.236;FractionInformativeReads=1;MQ=60;MQRankSum=0.038;QD=16.49;ReadPosRankSum=-1.826;SOR=1.39;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:721,0,666:18,2,21,1
chr1	28824507	.	CA	C,CAA,CAAA	36.62	PASS	AC=0,0,1;AF=0.407,0.056,0.037;AN=2;DP=971;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant6-variant7-variant9-filterInvariant10-filterInvariant12-variant15-filterInvariant17-variant21-variant22-variant23-variant25-variant26-variant29-filterInvariant31-variant33-filterInvariant34-filterInvariant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:27:99:12,4,8,3
chr1	28825365	.	C	CGGGCAGATAACGA	367.1	PASS	AC=1;AF=0.5;AN=2;DP=90;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:4,20:24:99:815,0,552:0,4,1,19
chr1	28826587	.	G	A	4230.01	PASS	AC=1;AF=0.565;AN=2;DP=4026;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant25-variant29-variant30-variant31-variant35-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:115,106:221:99:2679,0,3205:57,58,48,58
chr1	28832586	.	T	G	555.54	PASS	AC=1;AF=0.5;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:50,52:102:99:1126,0,1091:24,26,26,26
chr1	28832687	.	A	G	315.52	PASS	AC=1;AF=0.5;AN=2;DP=193;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:1129,0,939:8,18,15,15
chr1	28832697	.	G	A	206.3	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:1011,0,784:6,13,14,12
chr1	28832713	.	CT	C,CTT	79.24	PASS	AC=0,1;AF=0.3,0.2;AN=2;DP=346;set=variant-filterInvariant2-filterInvariant8-variant12-variant15-filterInvariant21-filterInvariant25-filterInvariant26-filterInvariant27-variant29	GT:DP:GQ:SB	0/2:28:99:4,9,8,7
chr1	28833834	.	T	A	499.82	PASS	AC=1;AF=0.5;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:528,0,745:20,10,12,11
chr1	28834112	.	CTTTTT	CTT,CTTT,C,CT	61.28	PASS	AC=0,0,0,1;AF=0.136,0.364,0.091,0.091;AN=2;DP=112;FS=0;MQ=60;set=variant3-variant6-variant8-variant9-variant13-variant14-variant15-variant19-variant24-variant30-variant35	GT:DP:GQ:SB	0/4:6:1:1,0,0,5
chr1	28834419	.	G	A	269.43	PASS	AC=1;AF=0.5;AN=2;DP=49;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:298,0,278:8,1,8,2
chr1	28835041	.	G	A	1741.99	PASS	AC=1;AF=0.5;AN=2;DP=776;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:104,111:215:99:2632,0,2624:51,53,64,47
chr1	28835270	.	CAT	C	868.38	PASS	AC=1;AF=0.5;AN=2;DP=254;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:36,42:78:99:1655,0,1405:28,8,23,19
chr1	28835426	.	AT	A,ATT	1863.6	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=654;MQ=60;set=variant13-variant14-variant15-variant25-variant40	GT:DP:GQ:SB	0/1:178:99:40,54,40,44
chr1	28856209	.	CTG	C	538.47	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:576,0,712:15,3,11,4
chr1	28858143	.	G	A	529.37	PASS	AC=1;AF=0.5;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:558,0,3480:13,11,10,5
chr1	28858144	.	AGAGGTACTTT	A	517.61	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:555,0,3527:14,11,10,5
chr1	28862193	.	G	A	1103.08	PASS	AC=1;AF=0.5;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1131,0,1122:20,24,18,27
chr1	28864435	.	A	G	508.98	PASS	AC=1;AF=0.5;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:890,0,1200:26,17,20,15
chr1	28865710	.	A	G	2970.08	PASS	AC=1;AF=0.563;AN=2;DP=3904;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,98:202:99:2415,0,2463:48,56,46,52
chr1	28865808	.	A	C	521.66	PASS	AC=1;AF=0.5;AN=2;DP=279;set=variant15-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:51,32:83:99:550,0,1415:19,32,6,26
chr1	28879723	.	T	C	1729.99	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0.635;FractionInformativeReads=1;MQ=60;MQRankSum=-0.319;QD=12.81;ReadPosRankSum=1.394;SOR=0.778;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:65,70:135:99:1758,0,1387:32,33,33,37
chr1	28887031	.	A	G	98.72	PASS	AC=1;AF=0.58;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:276,0,230:5,2,5,4
chr1	28969314	.	A	G	2749.76	PASS	AC=2;AF=1;AN=2;DP=5094;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3911,388,0:0,0,75,55
chr1	29019724	.	G	A	108.64	PASS	AC=1;AF=0.571;AN=2;DP=550;set=variant2-variant3-variant4-variant7-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:149,0,513:1,13,0,5
chr1	29036936	.	A	G	723.11	PASS	AC=1;AF=0.5;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant15-variant36	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:751,0,730:17,10,19,9
chr1	29037240	.	C	CT	131.39	PASS	AC=1;AF=0.65;AN=2;DP=115;MQ=60;set=variant7-variant10-variant15-variant19-variant21-variant23-variant24-variant26-variant28-variant40	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:56:108,0,56:0,3,0,5
chr1	29043253	.	TG	T,TGG	2116.51	PASS	AC=1,0;AF=0.667,0.028;AN=2;DP=3797;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:107:99:39,7,36,25
chr1	29043697	.	G	GT	39.7	PASS	AC=1;AF=0.537;AN=2;DP=715;set=filterInvariant3-variant4-filterInvariant5-variant7-filterInvariant9-filterInvariant11-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:85:104,0,85:0,7,1,7
chr1	29045123	.	A	G	808.25	PASS	AC=1;AF=0.574;AN=2;DP=1998;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1309,0,1150:20,25,18,30
chr1	29063236	.	G	A	680.25	PASS	AC=1;AF=0.58;AN=2;DP=1054;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:666,0,509:12,8,15,12
chr1	29063559	.	A	C	4158.68	PASS	AC=2;AF=0.989;AN=2;DP=5445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4719,452,0:0,0,68,83
chr1	29064036	.	C	T	948.1	PASS	AC=1;AF=0.548;AN=2;DP=1989;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant16-variant20-variant21-variant25-variant26-variant28-variant32-variant35-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1056,0,1199:31,19,25,20
chr1	29138975	.	G	T	1492.59	PASS	AC=2;AF=0.875;AN=2;DP=5370;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,129:131:99:3960,371,0:1,1,81,48
chr1	29189597	.	C	T	3214.03	PASS	AC=1;AF=0.676;AN=2;DP=12381;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:227,223:450:99:5383,0,5601:112,115,110,113
chr1	29190138	.	G	A	538.22	PASS	AC=1;AF=0.621;AN=2;DP=1794;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:766,0,803:14,19,15,17
chr1	29213316	.	A	C,T	150.89	PASS	AC=2,0;AF=0.769,0.013;AN=2;DP=776;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:19:57:0,0,12,7
chr1	29220178	.	G	A	561.61	PASS	AC=1;AF=0.725;AN=2;DP=1874;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:669,0,377:9,6,18,8
chr1	29220270	.	A	C	1485.99	PASS	AC=1;AF=0.725;AN=2;DP=4302;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1464,0,1271:31,24,29,33
chr1	29320013	.	G	A	1778.16	PASS	AC=1;AF=0.5;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant21-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1468,0,1545:34,31,33,33
chr1	29323595	.	T	C	223.6	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:162,0,365:9,6,5,0
chr1	29342090	.	G	GA	71.47	PASS	AC=1;AF=0.639;AN=2;DP=283;set=variant4-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant23-variant27-variant32-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:115,0,111:6,1,5,1
chr1	29345009	.	C	CTT	1348.62	PASS	AC=1;AF=0.875;AN=2;DP=1360;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:912,0,758:3,15,7,16
chr1	29345027	.	T	G	349.49	PASS	AC=1;AF=0.786;AN=2;DP=831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:452,0,465:1,12,3,12
chr1	29379992	.	G	A	187.64	PASS	AC=1;AF=0.604;AN=2;DP=390;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant29-variant32-variant35-variant36-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:229,0,303:0,8,1,6
chr1	29385486	.	G	C	697.96	PASS	AC=1;AF=0.604;AN=2;DP=1571;FractionInformativeReads=1;set=variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant29-variant32-variant35-variant36-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,47:85:99:1285,0,975:13,25,14,33
chr1	29442291	.	C	T	2333.22	PASS	AC=1;AF=0.5;AN=2;DP=1271;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:134,126:260:99:2885,0,3420:59,75,58,68
chr1	29443675	.	T	C	3071	PASS	AC=1;AF=0.756;AN=2;DP=3523;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,52:119:99:1468,0,1806:28,39,25,27
chr1	29443723	.	A	G	2433.82	PASS	AC=2;AF=0.802;AN=2;DP=3682;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3577,333,0:0,0,54,57
chr1	29444544	.	G	A	377.62	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:421,0,398:6,10,5,11
chr1	29444953	.	C	T	355.31	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:557,0,284:7,3,14,6
chr1	29445227	.	T	C	739.07	PASS	AC=1;AF=0.538;AN=2;DP=747;MQ=60;set=variant3-variant4-variant6-variant15-variant17-variant21-variant23-variant28-variant30-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,34:59:99:838,0,625:12,13,15,19
chr1	29445514	.	C	A	348.87	PASS	AC=1;AF=0.703;AN=2;DP=2233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,54:104:99:1361,0,1267:28,22,28,26
chr1	29445598	.	A	G	700.89	PASS	AC=1;AF=0.553;AN=2;DP=1526;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant15-variant17-variant21-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,68:119:99:1793,0,1223:24,27,37,31
chr1	29446332	.	AT	A	2770.69	PASS	AC=2;AF=0.774;AN=2;DP=4149;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3654,363,0:0,0,73,48
chr1	29446655	.	A	G	2146.01	PASS	AC=1;AF=0.5;AN=2;DP=1243;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:147,129:276:99:3239,0,3690:60,87,50,79
chr1	29446811	.	A	G	1791.3	PASS	AC=2;AF=0.774;AN=2;DP=3199;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3220,306,0:0,0,43,59
chr1	29446847	.	T	C	874.12	PASS	AC=1;AF=0.5;AN=2;DP=455;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:1076,0,1438:23,35,19,24
chr1	29450284	.	CGAGG	C,CGAGGGAGG	1036.72	PASS	AC=2,0;AF=0.756,0.035;AN=2;DP=1205;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:37:99:0,0,19,18
chr1	29474134	.	A	C	70.68	PASS	AC=2;AF=0.885;AN=2;DP=167;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:231,21,0:0,0,4,3
chr1	29475341	.	C	T	911.79	PASS	AC=2;AF=0.695;AN=2;DP=1442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1508,122,0:0,0,18,23
chr1	29475394	.	C	G	1227.74	PASS	AC=2;AF=0.695;AN=2;DP=1854;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2253,188,0:0,0,42,21
chr1	29475648	.	T	G	3770.6	PASS	AC=2;AF=0.814;AN=2;DP=4790;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,127:129:99:3789,337,0:1,1,48,79
chr1	29508327	.	C	G	1594.38	PASS	AC=1;AF=0.5;AN=2;DP=916;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:79,77:156:99:1951,0,3124:35,44,35,42
chr1	29508350	.	C	T	1327.45	PASS	AC=1;AF=0.559;AN=2;DP=1966;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant15-variant21-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,82:158:99:2018,0,2825:36,40,38,44
chr1	29508546	.	G	A	845.33	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=1.96;FractionInformativeReads=0.986;MQ=60;MQRankSum=-2.036;QD=11.58;ReadPosRankSum=-0.953;SOR=0.473;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:874,0,749:13,21,17,21
chr1	29519778	.	T	G	2197.51	PASS	AC=2;AF=0.814;AN=2;DP=3741;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2859,285,0:0,0,53,42
chr1	29527145	.	C	T	1747.88	PASS	AC=1;AF=0.5;AN=2;DP=755;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:64,78:142:99:1915,0,1529:30,34,34,44
chr1	29528412	.	G	C	1047.03	PASS	AC=1;AF=0.5;AN=2;DP=547;MQ=60;set=variant11-variant12-variant15-variant17-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:72,54:126:99:1117,0,1787:45,27,27,27
chr1	29529699	.	T	C	2043.81	PASS	AC=2;AF=0.826;AN=2;DP=5634;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4351,423,0:0,0,77,64
chr1	29533080	.	A	G	239.84	PASS	AC=2;AF=0.568;AN=2;DP=534;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant12-variant15-variant17-variant21-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1150,111,0:0,0,24,13
chr1	29542435	.	C	G	1934.37	PASS	AC=2;AF=0.943;AN=2;DP=3296;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2747,263,0:0,0,60,28
chr1	29542637	.	A	G	3414.79	PASS	AC=2;AF=0.814;AN=2;DP=7207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:6020,589,0:0,0,90,107
chr1	29542926	.	A	T	372.99	PASS	AC=2;AF=0.821;AN=2;DP=504;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:438,33,0:0,0,9,2
chr1	29557224	.	C	T	4152.55	PASS	AC=2;AF=0.762;AN=2;DP=8714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,181:182:99:5464,531,0:1,0,93,88
chr1	29563015	.	G	C	236.5	PASS	AC=2;AF=1;AN=2;DP=909;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:753,75,0:0,0,14,11
chr1	29563021	.	T	TGGACTCGGCGCCAGTCCCGCTCC	234.15	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=0.917;MQ=60;MQRankSum=-0.7;QD=9.76;ReadPosRankSum=-2.765;SOR=1.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:271,0,647:9,7,4,2
chr1	29585142	.	G	A	1871.27	PASS	AC=1;AF=0.5;AN=2;DP=197;FS=0.533;FractionInformativeReads=0.995;MQ=60;MQRankSum=1.032;QD=9.5;ReadPosRankSum=0.439;SOR=0.75;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:117,79:196:99:1900,0,2772:55,62,36,43
chr1	29609502	.	TG	T	540.58	PASS	AC=1;AF=0.579;AN=2;DP=871;MQ=60;set=variant5-variant11-variant13-variant14-variant15-variant17-variant21-variant23-variant24-variant27-variant29-variant31-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:552,0,986:13,24,7,16
chr1	29630554	.	T	C	169.14	PASS	AC=1;AF=0.5;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant17-variant27-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:258,0,589:2,15,2,7
chr1	29631236	.	C	CTA	1225.24	PASS	AC=1;AF=0.603;AN=2;DP=6590;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,111:207:99:4378,0,3854:50,46,56,55
chr1	29631782	.	C	T	444.98	PASS	AC=1;AF=0.531;AN=2;DP=597;MQ=60;set=variant4-variant9-variant15-variant17-variant20-variant21-variant23-variant27-variant28-variant30-variant31-variant34-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:684,0,663:17,6,19,4
chr1	29631909	.	A	G	6654.72	PASS	AC=2;AF=0.614;AN=2;DP=4162;MQ=60;set=variant3-variant4-variant5-variant9-variant10-variant11-variant15-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5930,582,0:0,0,108,87
chr1	29633491	.	T	TCAGCC	544.33	PASS	AC=1;AF=0.558;AN=2;DP=631;MQ=60;set=variant3-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:345,0,1226:16,4,6,2
chr1	29637136	.	T	C	474.13	PASS	AC=1;AF=0.65;AN=2;DP=985;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:725,0,347:10,2,19,3
chr1	29674934	.	G	A	156.22	PASS	AC=1;AF=0.833;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant15-variant18-variant20-variant24-variant29-variant31-variant34-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:25:108,0,25:0,1,3,0
chr1	29674996	.	C	T	96.68	PASS	AC=1;AF=0.705;AN=2;DP=174;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant21-variant22-variant23-variant26-variant27-variant29-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:61:61,0,205:4,4,1,2
chr1	29696060	.	T	C	2604.54	PASS	AC=2;AF=0.686;AN=2;DP=5392;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4689,465,0:0,0,92,63
chr1	29720422	.	C	T	961.62	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=2.408;FractionInformativeReads=1;MQ=60;MQRankSum=-1.171;QD=14.35;ReadPosRankSum=-0.5;SOR=0.216;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:990,0,1368:1,37,2,27
chr1	29842261	.	A	T	637.02	PASS	AC=1;AF=0.989;AN=2;DP=1318;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:4,25:29:12:666,0,12:2,2,17,8
chr1	29845223	.	C	A	338.82	PASS	AC=1;AF=0.5;AN=2;DP=223;set=variant4-variant11-variant15-variant17-variant23-variant29-variant35	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:342,0,660:4,19,2,10
chr1	29863096	.	ACTTTTT	A	97.73	PASS	AC=1;AF=0.833;AN=2;DP=120;FS=0;set=variant4-variant9-variant10-variant11-variant14-variant15-variant17-variant20-variant29-variant34-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:12:414,0,12:1,1,5,5
chr1	29863140	.	CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCT	C	204.88	PASS	AC=1;AF=0.6;AN=2;DP=124;set=variant9-variant11-variant14-variant15-variant17-variant20-variant23-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:121,0,99:3,0,0,3
chr1	29863405	.	G	A	295.68	PASS	AC=1;AF=0.611;AN=2;DP=135;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant20-variant21-variant23-variant24-variant29-variant32-variant34-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:156,0,74:1,2,0,4
chr1	31186224	.	GCACA	GCA,G	1105.4	PASS	AC=1,0;AF=0.527,0.054;AN=2;DP=4066;set=variant-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant38-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:104:99:40,49,7,8
chr1	31196255	.	G	A	500.96	PASS	AC=2;AF=0.648;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1214,101,0:0,0,26,8
chr1	31207781	.	C	T	267.74	PASS	AC=2;AF=0.743;AN=2;DP=788;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:902,78,0:0,0,19,7
chr1	31212578	.	C	T	176.92	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=2.128;FractionInformativeReads=1;MQ=60;MQRankSum=-0.079;QD=8.85;ReadPosRankSum=-1.189;SOR=1.402;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:205,0,328:9,4,6,1
chr1	31215364	.	T	C	1315.92	PASS	AC=1;AF=0.672;AN=2;DP=3822;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,53:127:99:1263,0,1800:42,32,29,24
chr1	31230195	.	T	C	274.74	PASS	AC=1;AF=0.721;AN=2;DP=508;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:342,0,300:3,7,9,4
chr1	31342590	.	G	T	566.64	PASS	AC=2;AF=0.567;AN=2;DP=686;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1878,182,0:0,0,38,23
chr1	31344250	.	A	G	949.56	PASS	AC=2;AF=0.563;AN=2;DP=1325;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3135,306,0:0,0,51,51
chr1	31345747	.	C	T	1089.3	PASS	AC=2;AF=0.533;AN=2;DP=1054;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2122,197,0:0,0,38,28
chr1	31347399	.	C	T	1126.55	PASS	AC=2;AF=0.563;AN=2;DP=1549;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3268,308,0:0,0,37,66
chr1	31349647	.	C	T	4054.26	PASS	AC=2;AF=0.542;AN=2;DP=2078;MQ=60;set=variant3-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant26-variant32-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:1,206:207:99:6241,571,0:1,0,102,104
chr1	31350566	.	T	C	296.34	PASS	AC=2;AF=0.7;AN=2;DP=1692;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1515,140,0:0,0,29,18
chr1	31351513	.	G	A	1167.62	PASS	AC=2;AF=0.538;AN=2;DP=1676;MQ=60;set=variant-variant3-variant7-variant8-variant11-variant14-variant15-variant16-variant24-variant30-variant32-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4050,390,0:0,0,61,69
chr1	31405509	.	TATA	TTA,T	204.24	PASS	AC=2,0;AF=0.607,0.036;AN=2;DP=185;MQ=60;set=variant2-variant5-variant8-variant9-variant11-variant13-variant15-variant20-variant22-variant23-variant32-variant35-variant36-variant44	GT:DP:GQ:SB	1/1:9:39:0,0,8,1
chr1	31405511	.	TA	T	204.27	PASS	AC=2;AF=0.625;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant9-variant13-variant15-variant20-variant22-variant23-variant32-variant36-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:448,39,0:0,0,12,1
chr1	31409726	.	CCT	C	766.44	PASS	AC=2;AF=0.542;AN=2;DP=1453;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3004,208,0:0,0,25,44
chr1	31415040	.	A	T	475.42	PASS	AC=2;AF=0.639;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant14-variant15-variant17-variant18-variant23-variant25-variant27-variant28-variant29-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:301,27,0:0,0,1,8
chr1	31418119	.	C	T	517.51	PASS	AC=2;AF=0.542;AN=2;DP=778;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1642,153,0:0,0,36,15
chr1	31426815	.	A	G	454.72	PASS	AC=2;AF=0.574;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1682,141,0:0,0,11,36
chr1	31440921	.	G	A	76.67	PASS	AC=2;AF=0.756;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:453,45,0:0,0,10,5
chr1	31445932	.	C	G	558.91	PASS	AC=2;AF=0.621;AN=2;DP=1052;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:964,96,0:0,0,20,12
chr1	31446069	.	TG	T	535.35	PASS	AC=2;AF=0.542;AN=2;DP=1048;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1887,141,0:0,0,21,26
chr1	31446071	.	T	A	544.38	PASS	AC=2;AF=0.542;AN=2;DP=1037;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1887,141,0:0,0,21,26
chr1	31478638	.	AAGAGAGAGAG	AAGAG,A,AAG,AAGAGAGAGAGAGAG	806.46	PASS	AC=2,0,0,0;AF=0.605,0.116,0.012,0.012;AN=2;DP=3408;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:71:99:1,0,41,29
chr1	31479005	.	C	T	369	PASS	AC=2;AF=0.542;AN=2;DP=1301;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2205,201,0:0,0,20,47
chr1	31501755	.	T	C	636.97	PASS	AC=2;AF=0.542;AN=2;DP=1051;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1162,102,0:0,0,9,25
chr1	31653733	.	T	C	1357.28	PASS	AC=1;AF=0.849;AN=2;DP=1895;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:688,0,751:13,18,12,12
chr1	31653988	.	A	G	772.88	PASS	AC=1;AF=0.826;AN=2;DP=1889;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:821,0,537:12,10,13,16
chr1	31654305	.	C	G	1375.67	PASS	AC=1;AF=0.826;AN=2;DP=2886;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,48:66:99:1177,0,407:13,5,26,22
chr1	31654940	.	C	T	921.11	PASS	AC=1;AF=0.833;AN=2;DP=1401;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:259,0,573:4,13,4,8
chr1	31732384	.	AG	A	2267.34	PASS	AC=1;AF=0.5;AN=2;DP=219;FS=4.855;FractionInformativeReads=0.973;MQ=60;MQRankSum=-1.787;QD=10.35;ReadPosRankSum=0.584;SOR=1.009;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:109,104:213:99:2305,0,2594:64,45,68,36
chr1	31732390	.	G	A	6090.03	PASS	AC=1;AF=0.989;AN=2;DP=7980;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:111,117:228:99:2262,0,2444:71,40,67,50
chr1	31732602	.	CAA	C,CA,CAAA	1669.9	PASS	AC=1,1,0;AF=0.209,0.523,0.012;AN=2;DP=3715;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:51:99:2,4,15,30
chr1	31733721	.	A	AAAG	359.21	PASS	AC=2;AF=0.833;AN=2;DP=545;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:769,57,0:0,0,16,3
chr1	31733782	.	T	A	1562.19	PASS	AC=2;AF=0.824;AN=2;DP=2133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,90:91:99:2858,263,0:1,0,58,32
chr1	31733926	.	A	G	1475.35	PASS	AC=2;AF=0.837;AN=2;DP=4773;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,142:143:99:4241,419,0:1,0,61,81
chr1	31734033	.	CA	C	66.27	PASS	AC=2;AF=0.809;AN=2;DP=525;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,12:13:14:286,14,0:0,1,1,11
chr1	31740668	.	C	T	2034.3	PASS	AC=2;AF=0.833;AN=2;DP=1990;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1790,180,0:0,0,33,27
chr1	31744168	.	G	A	787.66	PASS	AC=2;AF=0.833;AN=2;DP=987;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:933,90,0:0,0,18,12
chr1	31744505	.	A	AT	159.63	PASS	AC=2;AF=0.878;AN=2;DP=595;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:370,44,0:0,0,7,8
chr1	31754511	.	G	C	991.02	PASS	AC=2;AF=0.824;AN=2;DP=914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,27:28:38:1044,38,0:0,1,3,24
chr1	31761989	.	G	A	1529.35	PASS	AC=2;AF=1;AN=2;DP=2885;FS=0;MQ=60;MQRankSum=1.175;ReadPosRankSum=-0.212;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,85:87:99:2715,241,0:2,0,58,27
chr1	31762374	.	C	T	2043.82	PASS	AC=2;AF=0.837;AN=2;DP=2876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2426,239,0:0,0,41,39
chr1	31764693	.	G	A	1245.9	PASS	AC=2;AF=0.833;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1268,111,0:0,0,29,8
chr1	31764713	.	C	CAAG	2086.43	PASS	AC=2;AF=0.824;AN=2;DP=1427;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2208,150,0:0,0,33,13
chr1	31764930	.	T	C	1590.86	PASS	AC=2;AF=1;AN=2;DP=2245;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1614,140,0:0,0,11,36
chr1	31765968	.	C	T	2075.56	PASS	AC=2;AF=0.833;AN=2;DP=1804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1974,183,0:0,0,37,24
chr1	31792141	.	A	G	707.71	PASS	AC=2;AF=0.838;AN=2;DP=819;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1253,105,0:0,0,7,28
chr1	31811506	.	T	A	389.58	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=2.092;FractionInformativeReads=1;MQ=60;MQRankSum=0.616;QD=18.55;ReadPosRankSum=1.629;SOR=1.371;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:418,0,205:6,2,11,2
chr1	31837320	.	T	C	1953.24	PASS	AC=2;AF=0.811;AN=2;DP=2890;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3047,267,0:0,0,45,44
chr1	31838551	.	TAA	TA,TAAA,T	121.43	PASS	AC=1,0,0;AF=0.306,0.181,0.014;AN=2;DP=1051;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-filterInvariant29-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:35:99:17,2,11,5
chr1	31840426	.	C	G	1268.5	PASS	AC=2;AF=0.811;AN=2;DP=1510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2023,165,0:0,0,10,45
chr1	31882330	.	T	G	1606.86	PASS	AC=2;AF=1;AN=2;DP=1404;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1515,149,0:0,0,34,16
chr1	31886000	.	TGGGGCGGGGCC	T	265.91	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=0.909;MQ=60;MQRankSum=0.898;QD=24.17;ReadPosRankSum=0.48;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:99:303,0,145:1,1,4,4
chr1	31897493	.	A	G	2264.94	PASS	AC=2;AF=1;AN=2;DP=2939;FS=0;MQ=60;MQRankSum=-0.027;ReadPosRankSum=0.247;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2888,266,0:0,0,65,24
chr1	31898132	.	T	C	1242.86	PASS	AC=2;AF=0.794;AN=2;DP=3658;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,93:95:99:2789,236,0:1,1,54,39
chr1	31898162	.	C	T	1358.92	PASS	AC=2;AF=0.794;AN=2;DP=4633;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3792,381,0:0,0,73,54
chr1	31898234	.	T	C	1660.16	PASS	AC=2;AF=0.794;AN=2;DP=4574;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4058,375,0:0,0,63,62
chr1	31898279	.	A	C	1194.2	PASS	AC=2;AF=0.794;AN=2;DP=3226;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,98:100:99:2979,265,0:1,1,49,49
chr1	31898463	.	C	T	470.35	PASS	AC=2;AF=0.794;AN=2;DP=810;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1111,93,0:0,0,18,13
chr1	31898536	.	C	T	1323.18	PASS	AC=2;AF=0.794;AN=2;DP=1732;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2193,192,0:0,0,41,23
chr1	31898639	.	C	T	1168.48	PASS	AC=1;AF=0.5;AN=2;DP=1490;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant11-variant14-variant15-variant17-variant26-variant31-variant33-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,59:129:99:1538,0,1785:36,34,34,25
chr1	31899684	.	A	T	382.42	PASS	AC=2;AF=1;AN=2;DP=1838;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1355,135,0:0,0,18,27
chr1	31899704	.	C	T	281.14	PASS	AC=2;AF=0.864;AN=2;DP=1335;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1047,102,0:0,0,11,23
chr1	31905889	.	A	ACAG	6543.73	PASS	AC=2;AF=0.907;AN=2;DP=7555;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,226:228:99:10081,622,0:1,1,130,96
chr1	31906882	.	A	G	2731.08	PASS	AC=2;AF=0.943;AN=2;DP=5034;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4666,452,0:0,0,84,67
chr1	31907102	.	A	G	1558.64	PASS	AC=2;AF=0.909;AN=2;DP=3034;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,89:90:99:2715,258,0:1,0,32,57
chr1	31907457	.	A	C,G	1863.63	PASS	AC=2,0;AF=0.67,0.273;AN=2;DP=2053;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:65:99:0,0,26,39
chr1	31971684	.	C	G	467.98	PASS	AC=2;AF=0.735;AN=2;DP=785;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1327,102,0:0,0,29,5
chr1	31973122	.	GTGGAGTCTGTC	G	1942.9	PASS	AC=2;AF=0.77;AN=2;DP=3659;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:4414,298,0:0,0,47,51
chr1	31973138	.	T	C	2026.96	PASS	AC=2;AF=0.77;AN=2;DP=3608;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:4439,301,0:0,0,47,53
chr1	31973215	.	G	A	1249.58	PASS	AC=2;AF=0.77;AN=2;DP=3068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2596,243,0:0,0,35,46
chr1	31973266	.	G	A	1337.43	PASS	AC=2;AF=0.75;AN=2;DP=2579;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2133,189,0:0,0,31,32
chr1	31973348	.	A	C	1429.07	PASS	AC=2;AF=0.77;AN=2;DP=3443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2963,276,0:0,0,51,41
chr1	31973409	.	G	A	1766.36	PASS	AC=2;AF=0.77;AN=2;DP=3885;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3087,319,0:0,0,52,55
chr1	31973440	.	G	A	1964.47	PASS	AC=2;AF=0.77;AN=2;DP=3575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2883,277,0:0,0,40,53
chr1	31973481	.	C	T	1548.72	PASS	AC=2;AF=0.75;AN=2;DP=2695;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2617,237,0:0,0,30,49
chr1	31973703	.	T	C	247.44	PASS	AC=2;AF=0.75;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:651,57,0:0,0,4,15
chr1	32042268	.	G	A	988.97	PASS	AC=1;AF=0.55;AN=2;DP=473;MQ=60;set=variant5-variant11-variant15-variant19-variant22-variant23-variant29-variant33-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:981,0,601:13,11,19,14
chr1	32042540	.	G	A	239.89	PASS	AC=1;AF=0.618;AN=2;DP=813;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:355,0,559:13,3,8,3
chr1	32044641	.	G	GTTTAATTTCAGTGAGAGCTGGTGTGTCTGTGTGTGTGTGTGTGATGTCTTCAGTTATAA,GTTTAATTTCAGTGAGAGCTGGTGTGTCTATGTGTGTGTGTGTGTGATGTCTTCAGTTATAA,GTTTAATTTCAGTGAGAGCTGTTGTGTCTATGTGTGTGTGTGTGTGATGTCTTCAGTTATAA	1710.94	PASS	AC=1,1,0;AF=0.452,0.238,0.31;AN=2;DP=517;FS=0;MQRankSum=0.474;ReadPosRankSum=0.474;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/2:9:99:0,0,8,1
chr1	32045814	.	G	C	69.95	PASS	AC=2;AF=0.75;AN=2;DP=76;set=variant-variant6-variant10-variant15-variant28-variant31-variant33-variant35-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:13:199,13,0:0,0,3,1
chr1	32045828	.	G	C	166.02	PASS	AC=2;AF=0.667;AN=2;DP=42;set=variant15-variant31-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,5:6:10:194,10,0:1,0,3,2
chr1	32052923	.	CT	C,CTT	122.75	PASS	AC=0,1;AF=0.458,0.042;AN=2;DP=665;set=variant3-variant5-filterInvariant7-variant8-variant9-variant10-variant12-variant13-filterInvariant14-filterInvariant15-variant20-variant21-filterInvariant23-filterInvariant25-variant28-filterInvariant30-variant34-filterInvariant35-variant38-variant39-variant40-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/2:14:73:4,5,3,2
chr1	32084671	.	C	A	724.56	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,30:45:99:753,0,287:8,7,16,14
chr1	32085170	.	A	G	1371.5	PASS	AC=1;AF=0.5;AN=2;DP=325;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1400,0,1206:26,23,30,23
chr1	32086912	.	A	C	784.51	PASS	AC=1;AF=0.762;AN=2;DP=1255;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:727,0,541:14,6,17,4
chr1	32100551	.	GA	G	1888.77	PASS	AC=1;AF=0.768;AN=2;DP=2878;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:728,0,921:11,23,12,16
chr1	32122424	.	TAA	TA,TAAA,T	85.64	PASS	AC=1,0,0;AF=0.452,0.032,0.016;AN=2;DP=664;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant37-variant39-filterInvariant41-variant42-variant43	GT:DP:GQ:SB	0/1:19:99:6,1,8,4
chr1	32126640	.	G	A	643.21	PASS	AC=1;AF=0.5;AN=2;DP=248;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:671,0,611:14,11,18,7
chr1	32127127	.	C	T	794.78	PASS	AC=1;AF=0.5;AN=2;DP=317;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:62,36:98:99:823,0,1554:28,34,12,24
chr1	32127911	.	C	T	1176.97	PASS	AC=1;AF=0.552;AN=2;DP=2085;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1222,0,1084:17,26,22,28
chr1	32127953	.	G	A	1065.92	PASS	AC=1;AF=0.552;AN=2;DP=1987;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,43:72:99:1100,0,912:6,23,19,24
chr1	32128283	.	C	G,A	264.39	PASS	AC=2,0;AF=0.583,0.05;AN=2;DP=426;MQ=60;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-filterInvariant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:12:33:0,0,1,11
chr1	32133737	.	C	T	361.44	PASS	AC=1;AF=0.523;AN=2;DP=952;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant24-variant26-variant28-variant30-variant32-variant33-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:424,0,760:18,10,13,4
chr1	32134491	.	C	G	194.63	PASS	AC=1;AF=0.738;AN=2;DP=803;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:282,0,306:4,8,3,9
chr1	32136168	.	G	C,T	4014.62	PASS	AC=1,1;AF=0.693,0.273;AN=2;DP=5182;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:131:99:1,0,75,55
chr1	32136398	.	G	A	1422.96	PASS	AC=1;AF=0.667;AN=2;DP=1979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:1120,0,526:5,15,8,28
chr1	32138045	.	G	A	1081.36	PASS	AC=1;AF=0.5;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant23-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,44:94:99:1130,0,1345:29,21,26,18
chr1	32138715	.	G	A	206.89	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:235,0,109:2,3,2,5
chr1	32140733	.	C	T	2998.67	PASS	AC=1;AF=0.671;AN=2;DP=4603;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,69:132:99:1757,0,1624:25,38,29,40
chr1	32145009	.	C	T	2358.43	PASS	AC=2;AF=0.977;AN=2;DP=4059;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3395,338,0:0,0,60,53
chr1	32148571	.	A	G	1533.83	PASS	AC=2;AF=1;AN=2;DP=4261;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3310,314,0:0,0,65,40
chr1	32151636	.	G	A	654.33	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:683,0,656:12,6,9,9
chr1	32155284	.	T	C	2509.12	PASS	AC=1;AF=0.675;AN=2;DP=5037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:1931,0,1994:44,41,38,40
chr1	32155911	.	G	T	1200.06	PASS	AC=1;AF=0.679;AN=2;DP=1335;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:674,0,556:15,8,18,5
chr1	32155929	.	G	A	1571.09	PASS	AC=1;AF=0.632;AN=2;DP=1712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:731,0,587:16,11,20,9
chr1	32156722	.	G	A	1723.01	PASS	AC=1;AF=0.645;AN=2;DP=2943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1229,0,969:24,14,31,18
chr1	32156869	.	A	T	5436.3	PASS	AC=2;AF=1;AN=2;DP=11181;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,266:266:99:7764,794,0:0,0,135,131
chr1	32156940	.	C	A	2606.32	PASS	AC=1;AF=0.5;AN=2;DP=2744;MQ=60;set=variant11-variant12-variant15-variant18-variant19-variant24-variant25-variant27-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:129,117:246:99:2884,0,3262:61,68,54,63
chr1	32157009	.	G	T	2457.89	PASS	AC=1;AF=0.5;AN=2;DP=2463;MQ=60;set=variant11-variant12-variant15-variant18-variant19-variant24-variant25-variant27-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:124,98:222:99:2311,0,3061:63,61,47,51
chr1	32157531	.	T	C	4876.69	PASS	AC=1;AF=0.645;AN=2;DP=6947;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,104:213:99:2330,0,2542:66,43,61,43
chr1	32158304	.	A	G	3511.89	PASS	AC=1;AF=0.5;AN=2;DP=3530;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant15-variant18-variant19-variant24-variant25-variant27-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:184,170:354:99:4427,0,4430:80,104,73,97
chr1	32158374	.	T	C	4550.5	PASS	AC=2;AF=0.726;AN=2;DP=8314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:7615,693,0:0,0,83,148
chr1	32159588	.	A	C	4324.85	PASS	AC=1;AF=0.726;AN=2;DP=7077;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,114:224:99:2682,0,2368:56,54,60,54
chr1	32160603	.	A	G	308.84	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:337,0,466:12,6,10,4
chr1	32160918	.	A	G	1287.35	PASS	AC=1;AF=0.738;AN=2;DP=2971;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1171,0,759:16,22,13,29
chr1	32164206	.	T	G	2865.37	PASS	AC=1;AF=0.803;AN=2;DP=3847;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,58:106:99:1543,0,1161:18,30,23,35
chr1	32165375	.	G	A	308.33	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:337,0,494:12,3,10,0
chr1	32167526	.	G	C	2488.75	PASS	AC=2;AF=1;AN=2;DP=4467;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3569,318,0:0,0,64,42
chr1	32169439	.	G	A	1289.56	PASS	AC=1;AF=0.5;AN=2;DP=278;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:49,54:103:99:1318,0,1333:34,15,32,22
chr1	32192786	.	A	C	369.33	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:398,0,431:10,9,10,5
chr1	32193063	.	C	T	1654.97	PASS	AC=1;AF=0.5;AN=2;DP=387;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:74,72:146:99:1683,0,1798:38,36,35,37
chr1	32193647	.	T	C	2223.2	PASS	AC=1;AF=0.829;AN=2;DP=3373;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,57:114:99:1468,0,1326:33,24,38,19
chr1	32194000	.	C	A	327.45	PASS	AC=1;AF=0.5;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:356,0,468:3,10,5,6
chr1	32194404	.	A	AACAC,AACACACACACACACACACAC,AAC,AACACACAC,AACACACACACAC,AACACAC,AACACACACACACACACACACAC,AACACACACACACACACACACACACAC	240.87	PASS	AC=0,0,0,0,2,0,0,0;AF=0.45,0.033,0.267,0.067,0.033,0.067,0.033,0.033;AN=2;DP=445;FS=0;MQRankSum=-0.198;ReadPosRankSum=-0.922;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	5/5:4:26:0,0,1,3
chr1	32196647	.	C	G	1568.08	PASS	AC=1;AF=0.553;AN=2;DP=2484;MQ=60;set=variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,70:150:99:1806,0,2183:35,45,26,44
chr1	32201417	.	C	T	1969.19	PASS	AC=1;AF=0.5;AN=2;DP=428;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:82,83:165:99:1997,0,2283:32,50,38,45
chr1	32201473	.	G	A	1529.51	PASS	AC=1;AF=0.5;AN=2;DP=345;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1558,0,1568:26,34,29,36
chr1	32202810	.	A	G	298.52	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:327,0,329:8,2,8,5
chr1	32204126	.	C	G	2300.92	PASS	AC=1;AF=0.5;AN=2;DP=473;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:99,95:194:99:2329,0,2382:46,53,45,50
chr1	32204476	.	G	A	1259.65	PASS	AC=1;AF=0.5;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:63,56:119:99:1288,0,1445:29,34,24,32
chr1	32205280	.	A	G	2044.87	PASS	AC=1;AF=0.5;AN=2;DP=385;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:75,78:153:99:2073,0,1965:31,44,27,51
chr1	32206838	.	G	A	905.68	PASS	AC=1;AF=0.5;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:934,0,615:13,9,22,8
chr1	32207581	.	T	G	3172.45	PASS	AC=1;AF=0.553;AN=2;DP=4150;MQ=60;set=variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,126:268:99:3182,0,3533:71,71,62,64
chr1	32209649	.	C	T	1058.05	PASS	AC=1;AF=0.5;AN=2;DP=194;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1086,0,1157:29,12,29,15
chr1	32223187	.	T	TG	528.83	PASS	AC=1;AF=0.5;AN=2;DP=319;MQ=60;set=variant9-variant13-variant15-variant16-variant28-variant29-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:657,0,520:5,13,5,17
chr1	32256086	.	T	C	1780.85	PASS	AC=1;AF=0.854;AN=2;DP=2594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1149,0,1050:26,16,26,19
chr1	32259317	.	G	A	1141.05	PASS	AC=1;AF=0.5;AN=2;DP=372;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:68,50:118:99:1169,0,1778:37,31,27,23
chr1	32259445	.	C	T	1229.85	PASS	AC=1;AF=0.5;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:83,54:137:99:1258,0,1971:35,48,23,31
chr1	32264393	.	G	A	1661.74	PASS	AC=1;AF=0.5;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant29	GT:AD:DP:GQ:PL:SB	0/1:76,71:147:99:1690,0,1856:40,36,35,36
chr1	32266026	.	A	G	6099.17	PASS	AC=2;AF=0.86;AN=2;DP=9136;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,270:273:99:7958,723,0:2,1,145,125
chr1	32280610	.	T	C	1753.14	PASS	AC=2;AF=0.762;AN=2;DP=3585;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3070,282,0:0,0,45,49
chr1	32372356	.	TACAC	TAC,T	47.89	PASS	AC=1,0;AF=0.566,0.118;AN=2;DP=1724;set=filterInvariant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:42:99:12,4,20,6
chr1	32538782	.	G	A	586.65	PASS	AC=1;AF=0.556;AN=2;DP=519;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant11-variant14-variant15-variant25-variant29-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:1149,0,1034:13,24,10,27
chr1	32638096	.	CTTTT	CTTT,CT,C	605.04	PASS	AC=1,0,0;AF=0.455,0.034,0.011;AN=2;DP=6856;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:160:99:58,40,32,30
chr1	32638363	.	T	C	92.06	PASS	AC=1;AF=0.5;AN=2;DP=193;MQ=60;set=filterInvariant10-filterInvariant15-variant36	GT:AD:DP:GQ:PL:SB	0/1:63,16:79:99:116,0,2819:18,45,16,0
chr1	32638368	.	A	C	73.18	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=138;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:62,14:76:99:101,0,2988:17,45,14,0
chr1	32638370	.	T	C	64.34	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=74;FS=55.06;FractionInformativeReads=1;MQ=60;MQRankSum=2.249;QD=0.87;ReadPosRankSum=-2.127;SOR=4.971;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,11:74:93:93,0,2979:16,47,11,0
chr1	32638774	.	TAA	TA,T	61.99	PASS	AC=1,0;AF=0.25,0.25;AN=2;DP=70;set=variant8-variant10-variant12-variant13-variant15-variant42	GT:DP:GQ:SB	0/1:9:35:2,1,3,3
chr1	32658062	.	G	GGT	456.93	PASS	AC=1;AF=0.671;AN=2;DP=1870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:1021,0,1016:15,13,11,17
chr1	32687616	.	T	C	839.55	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=2.875;FractionInformativeReads=1;MQ=60;MQRankSum=0.152;QD=14.73;ReadPosRankSum=0.008;SOR=0.29;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:868,0,847:4,22,8,23
chr1	32689857	.	A	G	590.89	PASS	AC=1;AF=0.52;AN=2;DP=1329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant23-variant24-variant25-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,20:59:99:579,0,1179:21,18,8,12
chr1	32768050	.	CT	CTT,C	49.63	PASS	AC=1,0;AF=0.182,0.318;AN=2;DP=307;set=filterInvariant-filterInvariant3-variant5-filterInvariant7-filterInvariant15-variant18-filterInvariant27-variant32-variant34-variant35-variant42	GT:DP:GQ:SB	0/1:36:97:18,7,5,6
chr1	32796103	.	G	A	696.92	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.295;FractionInformativeReads=1;MQ=60;MQRankSum=0.025;QD=16.59;ReadPosRankSum=0.253;SOR=0.976;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:725,0,548:13,6,17,6
chr1	32831543	.	C	T	604.22	PASS	AC=2;AF=0.872;AN=2;DP=1578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1484,120,0:0,0,21,19
chr1	32831583	.	C	T	180.17	PASS	AC=1;AF=0.5;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant11-variant14-variant15-variant19-variant20-variant24-variant32	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:690,0,743:15,12,14,12
chr1	32860161	.	T	C	510.01	PASS	AC=2;AF=1;AN=2;DP=1665;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1378,114,0:0,0,8,30
chr1	33065830	.	T	C	2993.91	PASS	AC=1;AF=0.5;AN=2;DP=239;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.368;QD=12.53;ReadPosRankSum=0.821;SOR=0.721;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:123,116:239:99:3022,0,3173:56,67,52,64
chr1	33065947	.	G	C	6646.82	PASS	AC=2;AF=1;AN=2;DP=7987;FS=0;MQ=60;MQRankSum=0.5;ReadPosRankSum=1.578;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,230:230:99:7195,689,0:0,0,115,115
chr1	33086999	.	CA	C,CAA	191.64	PASS	AC=1,0;AF=0.476,0.024;AN=2;DP=1848;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:44:99:17,9,14,4
chr1	33099798	.	A	G	321.04	PASS	AC=1;AF=0.548;AN=2;DP=465;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant23-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:479,0,212:4,6,3,13
chr1	33116206	.	A	T	1650.4	PASS	AC=1;AF=0.5;AN=2;DP=430;MQ=60;set=variant10-variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:68,80:148:99:1796,0,1389:30,38,35,45
chr1	33116623	.	T	G	103.12	PASS	AC=2;AF=0.952;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:433,33,0:0,0,9,2
chr1	33117071	.	T	G	2278.51	PASS	AC=2;AF=1;AN=2;DP=4479;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3293,331,0:0,0,47,64
chr1	33127730	.	T	C	661.89	PASS	AC=2;AF=1;AN=2;DP=1013;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1047,96,0:0,0,22,10
chr1	33133968	.	T	C	3710.16	PASS	AC=2;AF=1;AN=2;DP=3568;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3074,313,0:0,0,54,51
chr1	33134774	.	A	C	760.02	PASS	AC=1;AF=0.774;AN=2;DP=3468;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,52:103:99:1268,0,1390:20,31,23,29
chr1	33134989	.	A	G	341.76	PASS	AC=2;AF=0.943;AN=2;DP=2056;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1836,180,0:0,0,29,31
chr1	33138516	.	A	C	4661.04	PASS	AC=2;AF=1;AN=2;DP=5344;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4944,496,0:0,0,80,86
chr1	33138605	.	T	C	790	PASS	AC=2;AF=0.955;AN=2;DP=3373;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3571,356,0:0,0,43,76
chr1	33139043	.	C	T,CT	1355.01	PASS	AC=2,0;AF=0.955,0.034;AN=2;DP=1669;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:47:13:3,2,15,27
chr1	33139044	.	T	TC	321.06	PASS	AC=2;AF=0.932;AN=2;DP=1659;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:5,42:47:13:983,13,0:3,2,15,27
chr1	33146501	.	A	G	1260.66	PASS	AC=2;AF=0.955;AN=2;DP=3823;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3081,294,0:0,0,58,40
chr1	33147143	.	C	T	2546.19	PASS	AC=2;AF=1;AN=2;DP=3499;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3588,303,0:0,0,44,57
chr1	33160878	.	C	T	1197.31	PASS	AC=2;AF=0.955;AN=2;DP=7415;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5168,516,0:0,0,101,72
chr1	33161113	.	G	A	2482.92	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=0.577;FractionInformativeReads=1;MQ=60;MQRankSum=0.117;QD=15.14;ReadPosRankSum=1.571;SOR=0.765;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:74,90:164:99:2511,0,2103:39,35,49,41
chr1	33161212	.	T	C	1306.49	PASS	AC=2;AF=0.955;AN=2;DP=9321;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:7776,734,0:0,0,139,106
chr1	33233323	.	A	G	1596.92	PASS	AC=2;AF=1;AN=2;DP=2309;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2419,210,0:0,0,51,19
chr1	33234110	.	C	T	434.08	PASS	AC=1;AF=0.5;AN=2;DP=175;MQ=60;set=variant4-variant6-variant9-variant10-variant15-variant25-variant26-variant30-variant37	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:144,0,271:6,3,4,2
chr1	33234136	.	T	C	729.13	PASS	AC=2;AF=1;AN=2;DP=1188;FS=0;MQ=60;MQRankSum=0.8;ReadPosRankSum=0.933;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:804,75,0:0,0,16,9
chr1	33235651	.	A	G	2574.94	PASS	AC=1;AF=0.5;AN=2;DP=2631;MQ=60;set=variant2-variant6-variant15-variant18-variant25-variant26-variant30-variant34-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,135:283:99:3514,0,3654:82,66,73,62
chr1	33235789	.	C	T	3000.62	PASS	AC=1;AF=0.5;AN=2;DP=770;MQ=60;set=variant6-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:156,144:300:99:3202,0,3629:69,87,64,80
chr1	33236554	.	A	C	389.54	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1395;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:93,31:124:87:87,0,1670:30,63,31,0
chr1	33236558	.	T	C	383.51	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2336;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:88,31:119:99:290,0,1778:25,63,31,0
chr1	33236562	.	T	C	337.97	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1485;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:86,33:119:99:282,0,1723:23,63,32,1
chr1	33237885	.	A	C	632.9	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2991;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:103,39:142:99:848,0,1847:21,82,39,0
chr1	33237889	.	G	C	613.04	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2522;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:104,34:138:99:484,0,5216:21,83,34,0
chr1	33237892	.	T	C	163.37	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2826;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:109,32:141:99:476,0,5227:27,82,32,0
chr1	33237898	.	A	C	549.82	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=940;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:100,28:128:99:453,0,4996:18,82,28,0
chr1	33245802	.	C	G	1509.71	PASS	AC=1;AF=0.5;AN=2;DP=743;MQ=60;set=variant2-variant15-variant25-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,92:187:99:2264,0,2220:47,48,38,54
chr1	33256645	.	G	C	234.07	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant15-variant18-variant25-variant26-variant30-variant34-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:424,0,319:9,1,11,1
chr1	33256884	.	C	A	1258.31	PASS	AC=1;AF=0.538;AN=2;DP=3359;MQ=60;set=variant2-variant5-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,62:164:99:1489,0,2478:44,58,24,38
chr1	33276424	.	G	A	3536.51	PASS	AC=2;AF=1;AN=2;DP=4721;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3996,376,0:0,0,69,57
chr1	33282775	.	C	A	3851.13	PASS	AC=1;AF=0.5;AN=2;DP=1638;MQ=60;set=variant2-variant15-variant25-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:215,174:389:99:3819,0,5216:110,105,94,80
chr1	33283528	.	G	A	1464.94	PASS	AC=1;AF=0.5;AN=2;DP=528;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant25-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,75:127:99:1859,0,1197:25,27,37,38
chr1	33283729	.	C	A	766.53	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=3.807;FractionInformativeReads=1;MQ=60;MQRankSum=-1.467;QD=7.74;ReadPosRankSum=3.143;SOR=0.859;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:795,0,1454:27,31,23,18
chr1	33293748	.	T	C	365.93	PASS	AC=2;AF=1;AN=2;DP=489;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:756,57,0:0,0,2,17
chr1	33299816	.	A	T	1024.59	PASS	AC=2;AF=1;AN=2;DP=1056;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1236,105,0:0,0,8,27
chr1	33318561	.	T	C	1955.23	PASS	AC=2;AF=1;AN=2;DP=2106;FS=0;MQ=60;MQRankSum=-0.139;ReadPosRankSum=1.455;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2114,180,0:0,0,44,16
chr1	33318634	.	G	A	4633.44	PASS	AC=2;AF=1;AN=2;DP=5130;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4272,423,0:0,0,81,60
chr1	33321877	.	A	C	5448.06	PASS	AC=1;AF=0.5;AN=2;DP=2220;MQ=60;set=variant4-variant6-variant10-variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:245,255:500:99:6046,0,5609:108,137,114,141
chr1	33322919	.	CT	C	77.46	PASS	AC=1;AF=0.794;AN=2;DP=288;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:70:91,0,70:1,3,0,4
chr1	33324136	.	T	C	16821.5	PASS	AC=1;AF=0.762;AN=2;DP=19320;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:268,276:544:99:6609,0,6336:133,135,139,137
chr1	33328409	.	G	GGA	624.81	PASS	AC=1;AF=0.5;AN=2;DP=299;MQ=60;set=variant2-variant15-variant25-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:953,0,965:12,17,13,16
chr1	33330432	.	A	G	1922.4	PASS	AC=2;AF=1;AN=2;DP=3901;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,109:110:99:3463,291,0:1,0,38,71
chr1	33333104	.	G	A	558.48	PASS	AC=1;AF=0.5;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant15-variant25-variant26-variant34-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,26:67:99:605,0,1191:30,11,18,8
chr1	33360234	.	C	T	864.93	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:42,39:81:99:1144,0,1216:28,14,29,10
chr1	33360343	.	G	A	2945.99	PASS	AC=1;AF=0.5;AN=2;DP=685;MQ=60;set=variant11-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:126,127:253:99:3093,0,3040:72,54,72,55
chr1	33366704	.	T	A	1182.56	PASS	AC=1;AF=0.5;AN=2;DP=362;MQ=60;set=variant11-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:68,69:137:99:1452,0,1593:36,32,36,33
chr1	33402172	.	C	T	583.32	PASS	AC=1;AF=0.559;AN=2;DP=1091;MQ=60;set=variant5-variant8-variant11-variant15-variant17-variant18-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:914,0,1057:20,16,13,18
chr1	33402334	.	GA	G,GAA	1451.02	PASS	AC=1,0;AF=0.432,0.068;AN=2;DP=11913;set=Intersection	GT:DP:GQ:SB	0/1:286:99:108,92,49,37
chr1	33409551	.	C	T	679.86	PASS	AC=1;AF=0.595;AN=2;DP=893;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:794,0,719:19,11,19,11
chr1	33409693	.	G	A	1077.34	PASS	AC=1;AF=0.559;AN=2;DP=1857;MQ=60;set=variant5-variant8-variant11-variant15-variant17-variant18-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,72:146:99:1649,0,1698:37,37,33,39
chr1	33430102	.	T	G	309.99	PASS	AC=2;AF=1;AN=2;DP=421;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:535,45,0:0,0,12,3
chr1	33475426	.	C	T	1937.66	PASS	AC=1;AF=0.548;AN=2;DP=2359;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant12-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,82:147:99:1917,0,1714:44,21,45,37
chr1	33476353	.	C	T	60.79	PASS	AC=1;AF=0.5;AN=2;DP=268;FractionInformativeReads=1;set=filterInvariant2-filterInvariant11-filterInvariant14-variant15-filterInvariant18-filterInvariant25-filterInvariant34	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:123,0,543:13,4,4,4
chr1	33476385	.	C	G	81.63	PASS	AC=1;AF=0.5;AN=2;DP=292;FractionInformativeReads=1;set=variant8-variant15-filterInvariant18-filterInvariant19-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:39,7:46:99:171,0,2199:29,10,3,4
chr1	33476387	.	C	T	72.6	PASS	AC=1;AF=0.5;AN=2;DP=300;FractionInformativeReads=1;set=filterInvariant8-variant15-filterInvariant18-filterInvariant19-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:41,7:48:99:161,0,2325:30,11,3,4
chr1	33485789	.	AACACACAC	AACACACACACACACAC,AACAC,AACACACACACACAC,A,AACACAC,AACACACACAC,AAC,AACACACACACAC,AACACACACACACACACACACAC	238.02	PASS	AC=0,0,0,1,0,0,0,0,0;AF=0.024,0.146,0.183,0.28,0.061,0.049,0.024,0.012,0.024;AN=2;DP=777;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:13:99:0,6,0,7
chr1	33497070	.	G	A	1328.84	PASS	AC=2;AF=0.966;AN=2;DP=2043;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2245,194,0:0,0,51,14
chr1	33547768	.	T	C	1186.8	PASS	AC=1;AF=0.565;AN=2;DP=880;MQ=60;set=variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:615,0,789:16,18,16,12
chr1	33560338	.	A	G	688.67	PASS	AC=2;AF=0.977;AN=2;DP=2478;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,74:75:99:2180,189,0:1,0,31,43
chr1	33611890	.	C	T	421.53	PASS	AC=1;AF=0.756;AN=2;DP=2663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:1052,0,883:22,16,22,17
chr1	33612508	.	G	A	1221.16	PASS	AC=1;AF=0.609;AN=2;DP=2251;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,77:136:99:1984,0,1577:31,28,39,38
chr1	33625275	.	C	T	1717.59	PASS	AC=1;AF=0.5;AN=2;DP=687;MQ=60;set=variant3-variant12-variant15-variant16-variant19-variant23-variant31-variant32	GT:AD:DP:GQ:PL:SB	0/1:23,55:78:99:1566,0,697:19,4,42,13
chr1	33631069	.	C	A	408.73	PASS	AC=1;AF=0.587;AN=2;DP=1137;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,31:49:99:840,0,543:11,7,19,12
chr1	33641932	.	A	G	962.34	PASS	AC=2;AF=1;AN=2;DP=3118;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.231;ReadPosRankSum=1.675;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2129,213,0:0,0,39,32
chr1	33642152	.	C	T	633.93	PASS	AC=2;AF=0.763;AN=2;DP=3524;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2041,197,0:0,0,28,38
chr1	33646950	.	A	G	2440.87	PASS	AC=2;AF=0.763;AN=2;DP=8114;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,261:262:99:8595,747,0:1,0,119,142
chr1	33722051	.	C	CCCGCCG	1228.44	PASS	AC=2;AF=0.683;AN=2;DP=3298;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3872,264,0:0,0,50,31
chr1	33742228	.	T	C	538.68	PASS	AC=2;AF=1;AN=2;DP=1225;FS=0;MQ=60;MQRankSum=1.22;ReadPosRankSum=1.348;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:85:975,85,0:0,0,11,18
chr1	33746163	.	T	C	516.56	PASS	AC=2;AF=1;AN=2;DP=1414;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1455,142,0:0,0,16,32
chr1	33760743	.	T	C	1421.22	PASS	AC=2;AF=0.821;AN=2;DP=5737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4096,414,0:0,0,83,55
chr1	33764935	.	GT	GTTT,G	280.84	PASS	AC=2,0;AF=0.476,0.256;AN=2;DP=1721;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:38:99:0,0,19,19
chr1	33765272	.	A	G	917.57	PASS	AC=2;AF=0.629;AN=2;DP=2221;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3451,279,0:0,0,58,35
chr1	33766410	.	TGGAGAA	T	163.89	PASS	AC=2;AF=0.66;AN=2;DP=196;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant34-variant35-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:201,15,0:0,0,1,4
chr1	33777524	.	T	C	75.37	PASS	AC=2;AF=0.75;AN=2;DP=1285;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1173,114,0:0,0,25,13
chr1	33778226	.	G	A	388.61	PASS	AC=1;AF=0.607;AN=2;DP=708;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:230,0,690:7,13,4,6
chr1	33778591	.	T	C	384.67	PASS	AC=2;AF=0.75;AN=2;DP=1794;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1287,123,0:0,0,15,26
chr1	33789382	.	C	T	448.16	PASS	AC=1;AF=0.607;AN=2;DP=1675;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1108,0,1201:28,19,26,20
chr1	33789520	.	C	A	1231.22	PASS	AC=2;AF=0.75;AN=2;DP=4407;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3901,381,0:0,0,64,64
chr1	33789588	.	T	C	1333.45	PASS	AC=2;AF=0.75;AN=2;DP=5298;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4248,420,0:0,0,68,72
chr1	33794416	.	T	C	920.76	PASS	AC=1;AF=0.5;AN=2;DP=460;MQ=60;set=variant11-variant15-variant22-variant30-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1045,0,1062:27,15,27,16
chr1	33796891	.	C	A	537.77	PASS	AC=1;AF=0.5;AN=2;DP=221;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant22-variant30-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:778,0,494:13,4,21,6
chr1	33798126	.	T	G	822.24	PASS	AC=1;AF=0.5;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant30-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:850,0,708:8,20,9,22
chr1	33820033	.	C	T	493.7	PASS	AC=1;AF=0.5;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant30-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:522,0,602:14,9,12,6
chr1	33832865	.	A	G	1772.12	PASS	AC=2;AF=0.75;AN=2;DP=8098;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6520,622,0:0,0,99,109
chr1	33834416	.	T	C	380.31	PASS	AC=1;AF=0.531;AN=2;DP=458;MQ=60;set=variant7-variant9-variant10-variant14-variant15-variant21-variant25-variant26-variant27-variant30-variant31-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:672,0,498:4,15,1,19
chr1	33834455	.	A	G	104.25	PASS	AC=2;AF=0.732;AN=2;DP=499;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:555,45,0:0,0,2,13
chr1	33836796	.	C	G	921.4	PASS	AC=2;AF=0.75;AN=2;DP=2659;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2278,183,0:0,0,12,49
chr1	33840795	.	T	G	1136.96	PASS	AC=1;AF=0.553;AN=2;DP=1334;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant14-variant15-variant21-variant24-variant25-variant26-variant27-variant30-variant31-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,35:60:99:897,0,698:18,7,22,13
chr1	33840858	.	G	A	761.79	PASS	AC=1;AF=0.5;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant30-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,34:101:99:790,0,1662:36,31,21,13
chr1	33954469	.	AG	A	823.73	PASS	AC=2;AF=0.821;AN=2;DP=965;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1078,87,0:0,0,22,7
chr1	33957152	.	T	G	2173.7	PASS	AC=2;AF=1;AN=2;DP=4276;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3740,369,0:0,0,63,60
chr1	33957773	.	T	C	4857.69	PASS	AC=2;AF=0.821;AN=2;DP=7140;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:6407,650,0:0,0,98,119
chr1	33957878	.	T	C	3389.63	PASS	AC=2;AF=0.821;AN=2;DP=3832;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3214,276,0:0,0,45,47
chr1	33960062	.	A	G	3237.3	PASS	AC=2;AF=0.821;AN=2;DP=4272;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,110:111:99:3574,289,0:1,0,56,54
chr1	33961147	.	T	G	7819.59	PASS	AC=2;AF=0.821;AN=2;DP=7875;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:7427,671,0:0,0,139,85
chr1	33961722	.	C	T	1351.01	PASS	AC=2;AF=0.821;AN=2;DP=2512;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2057,201,0:0,0,39,28
chr1	33962141	.	C	G	3290.49	PASS	AC=1;AF=0.5;AN=2;DP=240;FS=1.695;FractionInformativeReads=1;MQ=60;MQRankSum=-0.782;QD=13.71;ReadPosRankSum=-0.276;SOR=0.825;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:118,122:240:99:3319,0,3136:38,80,36,86
chr1	33985353	.	C	G	5604.24	PASS	AC=2;AF=0.743;AN=2;DP=7293;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,286:286:99:8673,857,0:0,0,133,153
chr1	33999174	.	GT	G	969.96	PASS	AC=2;AF=0.704;AN=2;DP=1570;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant22-variant23-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2004,190,0:0,0,45,18
chr1	33999809	.	G	A	255.31	PASS	AC=2;AF=0.828;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:304,21,0:0,0,1,6
chr1	34003368	.	G	A	197.39	PASS	AC=2;AF=0.704;AN=2;DP=812;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant22-variant23-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:973,87,0:0,0,7,22
chr1	34038214	.	T	C	585.58	PASS	AC=1;AF=0.686;AN=2;DP=2343;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,30:82:99:701,0,1315:32,20,18,12
chr1	34038413	.	A	C	144.36	PASS	AC=1;AF=0.671;AN=2;DP=822;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,5:24:99:147,0,542:4,15,1,4
chr1	34038464	.	CT	C	118.68	PASS	AC=1;AF=0.688;AN=2;DP=289;FS=0;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:139,0,355:2,5,1,3
chr1	34038468	.	T	C	127.71	PASS	AC=1;AF=0.688;AN=2;DP=265;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:139,0,355:1,5,1,3
chr1	34042810	.	A	G	2535.77	PASS	AC=1;AF=0.575;AN=2;DP=1644;MQ=60;set=variant-variant5-variant8-variant10-variant15-variant16-variant18-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,43:91:99:1071,0,1248:30,18,26,17
chr1	34043169	.	TC	T	1515	PASS	AC=2;AF=1;AN=2;DP=3060;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.54;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2297,223,0:0,0,32,42
chr1	34043287	.	C	A	141.1	PASS	AC=1;AF=0.531;AN=2;DP=429;MQ=60;set=variant8-variant10-variant15-variant16-variant18-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:489,0,470:8,13,6,11
chr1	34052272	.	C	T	1037.73	PASS	AC=1;AF=0.5;AN=2;DP=482;FractionInformativeReads=1;set=variant-variant15-variant18-variant19-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:38,52:90:99:1425,0,939:12,26,19,33
chr1	34052305	.	C	T	930.57	PASS	AC=1;AF=0.538;AN=2;DP=1288;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:906,0,832:6,23,10,22
chr1	34052605	.	A	G	129.16	PASS	AC=2;AF=0.737;AN=2;DP=573;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:568,51,0:0,0,13,4
chr1	34057453	.	A	C	743.51	PASS	AC=1;AF=0.591;AN=2;DP=1569;MQ=60;set=variant6-variant8-variant13-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1102,0,1310:32,18,24,21
chr1	34070826	.	G	A	196.77	PASS	AC=1;AF=0.703;AN=2;DP=437;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:217,0,303:8,1,6,0
chr1	34071434	.	C	T	1063.14	PASS	AC=1;AF=0.697;AN=2;DP=2048;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,43:70:99:1189,0,627:13,14,25,18
chr1	34071525	.	C	T	1635.83	PASS	AC=1;AF=0.703;AN=2;DP=2506;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,53:86:99:1365,0,769:16,17,27,26
chr1	34158472	.	C	T	1521.65	PASS	AC=2;AF=0.625;AN=2;DP=3201;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6784,466,0:0,0,90,64
chr1	34158482	.	C	T	1684.95	PASS	AC=2;AF=0.625;AN=2;DP=3529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:7044,493,0:0,0,92,71
chr1	34189552	.	C	T	659.35	PASS	AC=1;AF=0.659;AN=2;DP=333;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant11-variant12-variant13-variant15-variant18-variant23-variant24-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:17:399,0,17:2,0,10,1
chr1	34189867	.	C	T	1288.19	PASS	AC=1;AF=0.5;AN=2;DP=606;MQ=60;set=variant10-variant11-variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:93,65:158:99:1467,0,2227:39,54,24,41
chr1	34189917	.	C	T	783.59	PASS	AC=2;AF=0.716;AN=2;DP=3535;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,92:93:99:3001,234,0:0,1,27,65
chr1	34189957	.	AG	A	1142.46	PASS	AC=2;AF=1;AN=2;DP=2574;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1616,142,0:0,0,12,35
chr1	34190444	.	G	A	130.83	PASS	AC=1;AF=0.5;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:385,0,395:1,11,2,9
chr1	34191973	.	C	G	643.61	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:628,0,332:8,5,15,8
chr1	34205134	.	C	T	232.71	PASS	AC=1;AF=0.757;AN=2;DP=495;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:300,0,194:1,6,1,8
chr1	34238283	.	T	C	3879.66	PASS	AC=1;AF=0.609;AN=2;DP=2794;MQ=60;set=variant2-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant27-variant29-variant30-variant33-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,67:138:99:1782,0,1763:36,35,29,38
chr1	34254108	.	CAA	CAAA,CA,CAAAA,C	127.75	PASS	AC=0,1,0,0;AF=0.333,0.185,0.019,0.019;AN=2;DP=898;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:32:99:9,5,16,2
chr1	34270498	.	G	A	3640.94	PASS	AC=1;AF=0.791;AN=2;DP=4748;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,75:133:99:1703,0,1421:21,37,32,43
chr1	34276210	.	T	TA,TAA	198.52	PASS	AC=1,0;AF=0.72,0.02;AN=2;DP=236;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41	GT:DP:GQ:SB	0/1:10:54:2,1,7,0
chr1	34278533	.	C	T	257.39	PASS	AC=1;AF=0.75;AN=2;DP=660;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:260,0,285:7,3,7,2
chr1	34278562	.	A	G	594.52	PASS	AC=1;AF=0.791;AN=2;DP=1123;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:215,0,183:5,3,5,4
chr1	34279742	.	A	T	1110.14	PASS	AC=1;AF=0.791;AN=2;DP=1831;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:811,0,548:10,13,14,16
chr1	34285342	.	G	A	254.26	PASS	AC=1;AF=0.671;AN=2;DP=1505;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:470,0,535:11,12,11,6
chr1	34285381	.	C	T	431.94	PASS	AC=1;AF=0.671;AN=2;DP=2278;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:764,0,710:13,14,16,12
chr1	34285995	.	G	A	256.07	PASS	AC=1;AF=0.681;AN=2;DP=1068;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,20:29:99:582,0,222:7,2,12,8
chr1	34286166	.	CAAAA	CA,CAA,C,CAAA	223.94	PASS	AC=0,1,0,0;AF=0.117,0.183,0.033,0.283;AN=2;DP=893;set=variant-filterInvariant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-filterInvariant18-variant19-variant20-variant22-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant41-filterInvariant42-variant43	GT:DP:GQ:SB	0/2:22:99:8,4,6,4
chr1	34286189	.	A	C	266.27	PASS	AC=1;AF=0.744;AN=2;DP=955;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:476,0,199:6,4,8,9
chr1	34326062	.	C	T	558.67	PASS	AC=1;AF=0.818;AN=2;DP=1142;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:407,0,324:8,5,11,4
chr1	34326409	.	T	C	4113.99	PASS	AC=2;AF=1;AN=2;DP=4407;FS=0;MQ=60;MQRankSum=0.874;ReadPosRankSum=0.478;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3888,327,0:0,0,36,73
chr1	34328552	.	G	A	189.51	PASS	AC=1;AF=0.703;AN=2;DP=1916;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-filterInvariant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:584,0,773:16,15,15,9
chr1	34329897	.	T	C	2501.99	PASS	AC=2;AF=0.943;AN=2;DP=4212;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3636,350,0:0,0,69,48
chr1	34330067	.	A	C	3194.7	PASS	AC=1;AF=0.818;AN=2;DP=7171;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:79,109:188:99:2766,0,1863:42,37,61,48
chr1	34330537	.	G	GGGA	508.82	PASS	AC=1;AF=0.622;AN=2;DP=376;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,10:11:64:400,0,64:1,0,2,8
chr1	34330545	.	G	A	418.6	PASS	AC=1;AF=0.561;AN=2;DP=243;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:76:246,0,76:2,0,2,3
chr1	34330555	.	A	G	334.49	PASS	AC=1;AF=0.518;AN=2;DP=196;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,156:4,0,1,2
chr1	34383662	.	T	C	2278.11	PASS	AC=1;AF=0.545;AN=2;DP=1573;MQ=60;set=variant3-variant13-variant15-variant25-variant27-variant30-variant31-variant32-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,79:174:99:1836,0,2420:56,39,43,36
chr1	34666473	.	C	T	1645.11	PASS	AC=1;AF=0.5;AN=2;DP=153;FS=1.272;FractionInformativeReads=1;MQ=60;MQRankSum=0.695;QD=10.75;ReadPosRankSum=0.958;SOR=0.567;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:75,78:153:99:1673,0,1736:33,42,37,41
chr1	35183838	.	A	C	1416.85	PASS	AC=2;AF=0.762;AN=2;DP=2267;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1636,150,0:0,0,36,14
chr1	35184033	.	C	T	1697.02	PASS	AC=2;AF=0.756;AN=2;DP=2197;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,70:71:99:2149,201,0:0,1,25,45
chr1	35184084	.	C	T	720	PASS	AC=2;AF=0.75;AN=2;DP=1121;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:868,81,0:0,0,9,18
chr1	35220730	.	A	G	1078.74	PASS	AC=1;AF=0.567;AN=2;DP=2905;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1265,0,1790:33,39,30,28
chr1	35223345	.	G	A	2145.94	PASS	AC=1;AF=0.529;AN=2;DP=2969;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant15-variant18-variant21-variant25-variant27-variant28-variant29-variant30-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,81:177:99:2202,0,2597:46,50,42,39
chr1	35223881	.	G	A	277.17	PASS	AC=1;AF=0.529;AN=2;DP=745;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant15-variant18-variant21-variant25-variant27-variant28-variant29-variant30-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:650,0,365:6,9,7,15
chr1	35227673	.	A	G	1906.96	PASS	AC=1;AF=0.667;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:1023,0,884:19,17,14,20
chr1	35228604	.	C	T	611.15	PASS	AC=1;AF=0.587;AN=2;DP=1428;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant25-variant26-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,52:90:99:1245,0,1064:12,26,24,28
chr1	35228693	.	C	A	1524.79	PASS	AC=1;AF=0.6;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant4-variant13-variant15-variant16-variant35	GT:AD:DP:GQ:PL:SB	0/1:21,34:55:99:912,0,654:12,9,16,18
chr1	35246653	.	T	C	207.7	PASS	AC=2;AF=0.625;AN=2;DP=768;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1137,87,0:0,0,24,5
chr1	35251219	.	C	A	3793.29	PASS	AC=2;AF=0.611;AN=2;DP=632;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant12-variant15-variant16-variant27-variant30-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3257,228,0:0,0,27,49
chr1	35251229	.	G	A	852.07	PASS	AC=2;AF=0.714;AN=2;DP=2227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:3139,216,0:0,0,23,48
chr1	35251669	.	C	T	1426.32	PASS	AC=2;AF=0.611;AN=2;DP=273;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant12-variant15-variant16-variant27-variant30-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1382,117,0:0,0,23,16
chr1	35259961	.	A	G	1785.36	PASS	AC=2;AF=0.773;AN=2;DP=10179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,316:318:99:9997,876,0:2,0,160,156
chr1	35260202	.	G	A	10369.1	PASS	AC=2;AF=0.611;AN=2;DP=2395;MQ=60;set=variant4-variant10-variant12-variant15-variant16-variant27-variant30-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,341:341:99:10610,1018,0:0,0,168,173
chr1	35260929	.	G	A	232.42	PASS	AC=2;AF=0.773;AN=2;DP=1827;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2131,171,0:0,0,28,29
chr1	35261044	.	CAG	C	4093.41	PASS	AC=2;AF=0.6;AN=2;DP=2291;set=variant4-variant8-variant10-variant12-variant15-variant16-variant17-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:4658,316,0:0,0,61,44
chr1	35261232	.	C	G	4216.58	PASS	AC=2;AF=0.6;AN=2;DP=3001;MQ=60;set=variant4-variant8-variant10-variant12-variant15-variant16-variant17-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4081,368,0:0,0,41,82
chr1	35318269	.	A	ATT,AT,ATTT	94.03	PASS	AC=1,0,0;AF=0.614,0.029,0.014;AN=2;DP=728;set=variant-variant2-variant4-variant5-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:27:99:9,5,9,4
chr1	35318368	.	A	G	1522.15	PASS	AC=2;AF=0.966;AN=2;DP=3200;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2898,276,0:0,0,50,42
chr1	35318439	.	A	G	2212.03	PASS	AC=2;AF=0.966;AN=2;DP=5013;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4375,449,0:0,0,77,73
chr1	35318934	.	C	T	1621.05	PASS	AC=1;AF=0.625;AN=2;DP=2236;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,63:125:99:1617,0,1926:44,18,44,19
chr1	35318957	.	T	G	2299.45	PASS	AC=1;AF=0.65;AN=2;DP=2844;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,82:157:99:2291,0,2160:51,24,56,26
chr1	35319323	.	C	T	5725.13	PASS	AC=2;AF=0.966;AN=2;DP=5201;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4683,384,0:0,0,24,104
chr1	35320690	.	T	G	4758.97	PASS	AC=1;AF=0.615;AN=2;DP=1868;MQ=60;set=variant4-variant15-variant16-variant17-variant18-variant22-variant25-variant28-variant31-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,80:173:99:1950,0,2311:47,46,43,37
chr1	35321684	.	A	AT,ATT	54.25	PASS	AC=1,0;AF=0.535,0.081;AN=2;DP=1664;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:37:99:2,9,5,21
chr1	35323395	.	T	G	740.73	PASS	AC=1;AF=0.667;AN=2;DP=866;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:342,0,318:3,9,5,9
chr1	35323550	.	C	T	61.77	PASS	AC=1;AF=0.775;AN=2;DP=152;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant13-variant14-variant15-variant18-variant23-variant24-variant27-variant28-variant30-variant32-variant34-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:198,0,130:3,2,5,2
chr1	35325413	.	C	T	628.3	PASS	AC=1;AF=0.667;AN=2;DP=697;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant27-variant28-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:384,0,376:4,9,2,10
chr1	35332926	.	G	C	598.97	PASS	AC=1;AF=0.531;AN=2;DP=559;MQ=60;set=variant5-variant6-variant10-variant11-variant12-variant15-variant20-variant23-variant29-variant30-variant31-variant35-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,28:42:99:815,0,416:7,7,20,8
chr1	35455735	.	A	G	1592.3	PASS	AC=1;AF=0.5;AN=2;DP=514;FractionInformativeReads=1;MQ=60;set=variant4-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:102,107:209:99:2490,0,2210:54,48,59,48
chr1	35545022	.	G	GGC	3281.24	PASS	AC=2;AF=1;AN=2;DP=2472;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3716,250,0:0,0,39,43
chr1	35561510	.	G	A	3367.07	PASS	AC=2;AF=0.942;AN=2;DP=3429;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,65:67:99:1685,150,0:1,1,34,31
chr1	35562965	.	G	A	3735.23	PASS	AC=2;AF=0.955;AN=2;DP=4613;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3846,378,0:0,0,75,52
chr1	35563206	.	C	G	2115.8	PASS	AC=2;AF=0.943;AN=2;DP=2308;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1931,179,0:0,0,20,40
chr1	35576145	.	C	T	106.77	PASS	AC=2;AF=0.973;AN=2;DP=213;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:290,21,0:0,0,1,6
chr1	35581295	.	GT	G	12076.8	PASS	AC=2;AF=0.955;AN=2;DP=14809;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,387:387:99:13728,1164,0:0,0,195,192
chr1	35836328	.	CTTT	CTTTTT,CTT,CTTTT,CT,C	83.56	PASS	AC=0,0,1,0,0;AF=0.111,0.056,0.222,0.056,0.056;AN=2;DP=163;set=variant3-variant10-filterInvariant12-variant15-variant23-variant32-variant38-variant39-variant43	GT:DP:GQ:SB	0/3:15:77:0,9,0,6
chr1	35925861	.	C	A	2372.01	PASS	AC=1;AF=0.932;AN=2;DP=3065;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:815,0,1148:27,18,22,14
chr1	36032230	.	CCACACACACA	CCACACACA,CCACACACACACA,CCA,CCACACA,C,CCACA,CCACACACACACACACACA,CCACACACACACACA	306.59	PASS	AC=1,0,0,0,0,0,0,0;AF=0.256,0.146,0.037,0.098,0.024,0.024,0.012,0.037;AN=2;DP=3137;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:48:99:17,17,9,5
chr1	36107200	.	G	T	1964.55	PASS	AC=1;AF=0.5;AN=2;DP=168;FS=9.002;FractionInformativeReads=1;MQ=60;MQRankSum=-0.964;QD=11.69;ReadPosRankSum=2.249;SOR=1.042;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:85,83:168:99:1993,0,2069:45,40,34,49
chr1	36107250	.	G	C	1661.38	PASS	AC=2;AF=1;AN=2;DP=3713;FS=0;MQ=60;MQRankSum=0.709;ReadPosRankSum=0.312;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3733,371,0:0,0,55,69
chr1	36107510	.	C	A	334.14	PASS	AC=2;AF=0.875;AN=2;DP=931;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:463,39,0:0,0,3,10
chr1	36184975	.	G	A	4341.45	PASS	AC=2;AF=1;AN=2;DP=6049;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5158,509,0:0,0,68,102
chr1	36203715	.	AT	A	40.8	PASS	AC=1;AF=0.75;AN=2;DP=32;FS=0;MQ=60;set=variant-variant6-variant8-variant11-variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:1:91,0,1:0,2,0,4
chr1	36203718	.	T	A	188.32	PASS	AC=1;AF=0.933;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant15-variant20-variant24-variant26-variant28-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:1:91,0,1:0,2,0,4
chr1	36205166	.	A	G	1435.19	PASS	AC=2;AF=0.884;AN=2;DP=1731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1781,155,0:0,0,11,41
chr1	36213712	.	G	T	1094.11	PASS	AC=2;AF=1;AN=2;DP=1659;FS=0;MQ=60;MQRankSum=1.639;ReadPosRankSum=1.639;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1532,126,0:0,0,12,30
chr1	36216835	.	C	T	537.75	PASS	AC=2;AF=0.884;AN=2;DP=1002;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1428,132,0:0,0,28,16
chr1	36282417	.	A	G,AG	1115.19	PASS	AC=2,0;AF=0.854,0.012;AN=2;DP=1359;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:28:56:0,2,20,6
chr1	36292524	.	C	G	750.08	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant15-variant22-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:411,0,557:4,14,2,11
chr1	36307412	.	CATAT	C,CAT	212.59	PASS	AC=1,0;AF=0.139,0.639;AN=2;DP=653;FS=0;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-filterInvariant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:3:44:0,1,1,1
chr1	36316418	.	C	CA	1332.99	PASS	AC=2;AF=1;AN=2;DP=2394;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,72:73:99:1968,193,0:1,0,49,23
chr1	36316571	.	A	C	3902.99	PASS	AC=2;AF=0.872;AN=2;DP=6545;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5514,549,0:0,0,85,98
chr1	36321253	.	CTT	CT,CTTT,C	241.93	PASS	AC=1,0,0;AF=0.487,0.013,0.013;AN=2;DP=3886;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-filterInvariant28-variant29-filterInvariant30-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:90:99:24,35,6,25
chr1	36372409	.	GA	G,GAA	72.76	PASS	AC=1,0;AF=0.467,0.033;AN=2;DP=1101;set=filterInvariant-variant3-variant4-variant5-variant6-variant7-filterInvariant9-variant10-variant12-variant15-filterInvariant16-filterInvariant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:46:99:28,4,9,5
chr1	36386905	.	G	T	74.46	PASS	AC=1;AF=0.5;AN=2;DP=708;set=filterInvariant6-filterInvariant8-filterInvariant10-filterInvariant11-variant12-filterInvariant14-filterInvariant15-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-variant34-filterInvariant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,14:44:99:113,0,968:11,19,14,0
chr1	36388080	.	A	G	799.08	PASS	AC=1;AF=0.5;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:51,55:106:99:1314,0,1122:25,26,23,32
chr1	36393158	.	A	G	327.84	PASS	AC=2;AF=0.966;AN=2;DP=1484;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1419,126,0:0,0,20,22
chr1	36549664	.	G	A	902.26	PASS	AC=1;AF=0.845;AN=2;DP=957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:360,0,277:8,1,9,6
chr1	36551895	.	A	G	103.54	PASS	AC=2;AF=1;AN=2;DP=171;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	36553673	.	A	G	2389.27	PASS	AC=2;AF=0.943;AN=2;DP=5525;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3388,344,0:0,0,61,54
chr1	36554442	.	G	C	4840.92	PASS	AC=2;AF=0.907;AN=2;DP=7906;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:6976,716,0:0,0,131,109
chr1	36556779	.	CA	C	543.67	PASS	AC=1;AF=0.5;AN=2;DP=589;MQ=60;set=variant4-variant7-variant9-variant13-variant14-variant15-variant20-variant22-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1258,0,1406:33,21,28,21
chr1	36563158	.	C	A	2210.69	PASS	AC=2;AF=0.884;AN=2;DP=3166;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:2991,303,0:0,0,47,55
chr1	36565175	.	G	A	879.16	PASS	AC=1;AF=0.5;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant14-variant15-variant17-variant18-variant19-variant29-variant31-variant32-variant33-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:735,0,938:14,20,8,19
chr1	36565584	.	C	G	996.82	PASS	AC=2;AF=0.898;AN=2;DP=1750;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1568,144,0:0,0,30,18
chr1	36565617	.	G	A	1364.48	PASS	AC=1;AF=0.829;AN=2;DP=2638;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,56:80:99:1376,0,523:16,8,33,23
chr1	36602943	.	C	T	1029.85	PASS	AC=1;AF=0.825;AN=2;DP=2480;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:994,0,955:9,26,9,27
chr1	36603290	.	C	T	404.99	PASS	AC=1;AF=0.8;AN=2;DP=791;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:346,0,342:9,2,9,3
chr1	36614664	.	GT	G	638.06	PASS	AC=1;AF=0.825;AN=2;DP=1859;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:940,0,966:21,10,24,6
chr1	36614713	.	C	G	1216.68	PASS	AC=1;AF=0.825;AN=2;DP=3026;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,50:89:99:1429,0,1029:23,16,35,15
chr1	36747997	.	AT	A,TT	551.09	PASS	AC=1,0;AF=0.603,0.034;AN=2;DP=1647;set=variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant37-filterInvariant38-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:72:99:21,14,22,15
chr1	36752152	.	C	T	1178.85	PASS	AC=1;AF=0.66;AN=2;DP=2441;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,55:106:99:1421,0,1399:32,19,32,23
chr1	36752433	.	C	T	346.48	PASS	AC=2;AF=0.841;AN=2;DP=4587;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4384,423,0:0,0,71,72
chr1	36754467	.	G	C	1463.1	PASS	AC=2;AF=0.977;AN=2;DP=1534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1070,93,0:0,0,24,7
chr1	36754522	.	C	A	3232.31	PASS	AC=2;AF=0.977;AN=2;DP=3525;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,77:78:99:2489,224,0:1,0,52,25
chr1	36762396	.	C	T	1486.61	PASS	AC=2;AF=0.977;AN=2;DP=2544;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1978,200,0:0,0,32,35
chr1	36766975	.	G	C	299.53	PASS	AC=2;AF=0.841;AN=2;DP=758;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:834,78,0:0,0,17,9
chr1	36767400	.	C	T	537.71	PASS	AC=2;AF=0.841;AN=2;DP=1788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1804,174,0:0,0,19,39
chr1	36770806	.	C	G	2595.29	PASS	AC=2;AF=0.989;AN=2;DP=2225;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1882,144,0:0,0,43,5
chr1	36773405	.	T	G	490.74	PASS	AC=1;AF=0.621;AN=2;DP=3286;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,64:136:99:1500,0,1907:32,40,32,32
chr1	36773819	.	C	G	1846.8	PASS	AC=2;AF=0.977;AN=2;DP=3814;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2642,264,0:0,0,40,48
chr1	36785270	.	C	T	585.14	PASS	AC=1;AF=0.55;AN=2;DP=1463;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant15-variant16-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant33-variant35-variant36-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:971,0,1154:18,22,17,21
chr1	36787888	.	G	A	1382.92	PASS	AC=1;AF=0.66;AN=2;DP=3506;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,92:172:99:2336,0,1889:37,43,45,47
chr1	36788356	.	A	G	1917.97	PASS	AC=2;AF=0.989;AN=2;DP=2857;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2615,240,0:0,0,35,45
chr1	36789356	.	G	C	137.46	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant15-variant17-variant22	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:384,0,551:15,4,11,4
chr1	36789546	.	A	G	1036.3	PASS	AC=1;AF=0.66;AN=2;DP=2089;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,48:102:99:1222,0,1397:26,28,28,20
chr1	36807481	.	C	T	970.3	PASS	AC=1;AF=0.6;AN=2;DP=2962;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant15-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant33-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,93:193:99:2089,0,2667:56,44,40,53
chr1	36809698	.	A	C	959.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=9236;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:154,78:232:99:1094,0,2386:18,136,73,5
chr1	36863456	.	G	A	1009.06	PASS	AC=1;AF=0.618;AN=2;DP=1767;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant13-variant14-variant15-variant16-variant20-variant23-variant27-variant31-variant32-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,61:154:99:1457,0,2283:45,48,31,30
chr1	36863523	.	A	G	2392.03	PASS	AC=2;AF=0.955;AN=2;DP=3865;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3283,327,0:0,0,46,63
chr1	36886364	.	C	G	937.28	PASS	AC=1;AF=0.757;AN=2;DP=950;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:334,0,573:6,15,2,9
chr1	36887702	.	C	T	2791	PASS	AC=1;AF=0.757;AN=2;DP=2326;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,55:90:99:1366,0,946:25,10,34,21
chr1	36888302	.	C	CT,CTT	301.39	PASS	AC=1,0;AF=0.542,0.021;AN=2;DP=961;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant21-variant24-variant25-variant26-variant27-variant31-variant33-variant36-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:50:99:14,9,17,10
chr1	36889197	.	T	C	238.97	PASS	AC=1;AF=0.797;AN=2;DP=297;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:147,0,193:1,5,0,4
chr1	36909385	.	G	A	366.55	PASS	AC=1;AF=0.6;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant13-variant14-variant15-variant16-variant20-variant27-variant31-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:267,0,254:7,1,8,0
chr1	36921371	.	G	T	1202.27	PASS	AC=1;AF=0.646;AN=2;DP=2757;MQ=60;set=variant2-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,54:140:99:1143,0,2025:47,39,30,24
chr1	36923494	.	G	C	997.29	PASS	AC=1;AF=0.6;AN=2;DP=1663;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant13-variant14-variant15-variant16-variant20-variant27-variant31-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1597,0,1561:40,27,41,30
chr1	36926445	.	C	T	990.03	PASS	AC=1;AF=0.648;AN=2;DP=2756;MQ=60;set=variant2-variant4-variant6-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,61:115:99:1534,0,1152:27,27,28,33
chr1	36927733	.	G	A	2819.16	PASS	AC=2;AF=0.989;AN=2;DP=3266;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3102,293,0:0,0,62,36
chr1	36935128	.	G	A	484.86	PASS	AC=1;AF=0.618;AN=2;DP=893;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant27-variant31-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:1153,0,978:19,11,24,8
chr1	36937059	.	A	G	3488.27	PASS	AC=1;AF=0.726;AN=2;DP=4225;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,68:168:99:2559,0,5350:54,46,34,34
chr1	36937065	.	A	G	1060.37	PASS	AC=1;AF=0.588;AN=2;DP=2273;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant27-variant31-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,71:173:99:2596,0,5442:54,48,34,37
chr1	36945307	.	AG	A	141.03	PASS	AC=1;AF=0.595;AN=2;DP=306;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant24-variant30-variant31-variant34-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:262,0,298:2,9,2,7
chr1	37307281	.	T	G	451.15	PASS	AC=1;AF=0.55;AN=2;DP=379;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant18-variant22-variant28-variant30-variant31-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:479,0,636:18,4,12,7
chr1	37324683	.	A	C	1843.91	PASS	AC=1;AF=0.583;AN=2;DP=1752;MQ=60;set=variant-variant8-variant9-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:1069,0,1148:31,10,28,7
chr1	37324935	.	T	C	1738.02	PASS	AC=1;AF=0.583;AN=2;DP=2260;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant9-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,43:96:99:1147,0,1488:14,39,11,32
chr1	37325477	.	A	C	1058.73	PASS	AC=1;AF=0.6;AN=2;DP=1685;MQ=60;set=variant-variant8-variant9-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,59:102:99:1430,0,977:28,15,36,23
chr1	37325723	.	C	T	426.64	PASS	AC=1;AF=0.583;AN=2;DP=335;MQ=60;set=variant15-variant20-variant25-variant27-variant28-variant35	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:455,0,741:8,18,7,11
chr1	37335458	.	A	G	2444.71	PASS	AC=2;AF=0.898;AN=2;DP=4368;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3816,350,0:0,0,41,76
chr1	37335485	.	A	G	1982.53	PASS	AC=2;AF=0.898;AN=2;DP=2813;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3753,265,0:0,0,24,64
chr1	37335494	.	G	T	1681.77	PASS	AC=2;AF=0.898;AN=2;DP=2417;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:3438,235,0:0,0,16,59
chr1	37626981	.	T	C	88.71	PASS	AC=1;AF=0.72;AN=2;DP=655;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:178,0,312:8,2,5,1
chr1	37940175	.	A	G	206.9	PASS	AC=2;AF=0.989;AN=2;DP=720;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:605,63,0:0,0,10,11
chr1	37940357	.	A	G	106.77	PASS	AC=2;AF=0.762;AN=2;DP=155;set=variant-variant2-variant3-variant5-variant9-variant10-variant11-variant15-variant16-variant21-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,3,0
chr1	37948164	.	C	G	1839.86	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=0.675;FractionInformativeReads=1;MQ=60;MQRankSum=-0.693;QD=15.08;ReadPosRankSum=-0.128;SOR=0.815;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:57,65:122:99:1868,0,1448:29,28,35,30
chr1	37948212	.	C	G	2706.88	PASS	AC=1;AF=0.614;AN=2;DP=3221;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant15-variant17-variant18-variant21-variant22-variant27-variant29-variant31-variant33-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,65:135:99:1817,0,1958:36,34,33,32
chr1	37958161	.	CAA	CA,C,CAAA,CAAAA,CAAAAA	607.33	PASS	AC=1,0,0,0,0;AF=0.2,0.1,0.157,0.1,0.014;AN=2;DP=3764;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:120:99:52,28,36,4
chr1	37958389	.	A	G	6139.18	PASS	AC=1;AF=0.553;AN=2;DP=7756;MQ=60;set=variant-variant6-variant9-variant12-variant15-variant17-variant18-variant22-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:220,253:473:99:6512,0,5756:96,124,104,149
chr1	37958451	.	C	G	3850.21	PASS	AC=1;AF=0.553;AN=2;DP=4843;MQ=60;set=variant-variant6-variant9-variant12-variant15-variant17-variant18-variant22-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:153,143:296:99:3779,0,3827:64,89,47,96
chr1	37958813	.	C	G	1395.89	PASS	AC=1;AF=0.553;AN=2;DP=1904;MQ=60;set=variant-variant6-variant9-variant12-variant15-variant17-variant18-variant22-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,67:148:99:1590,0,1900:44,37,33,34
chr1	37959450	.	T	C	1809.26	PASS	AC=2;AF=0.864;AN=2;DP=6578;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5888,561,0:0,0,73,114
chr1	37959470	.	C	G	1692.8	PASS	AC=2;AF=0.864;AN=2;DP=5570;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5109,470,0:0,0,53,104
chr1	37959499	.	G	C	1665.97	PASS	AC=1;AF=0.568;AN=2;DP=2107;MQ=60;set=variant3-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,52:110:99:1235,0,1598:20,38,19,33
chr1	37961285	.	C	CA,CAAA,CAA	43.7	PASS	AC=1,0,0;AF=0.423,0.038,0.115;AN=2;DP=195;set=variant2-variant4-variant7-variant8-variant12-variant13-variant15-variant16-variant24-variant30-variant31-variant34-variant44	GT:DP:GQ:SB	0/1:10:99:5,0,5,0
chr1	37961297	.	AC	A	527.91	PASS	AC=1;AF=0.577;AN=2;DP=350;set=variant11-variant14-variant15-variant18-variant19-filterInvariant21-variant23-variant24-variant29-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:386,0,362:12,1,12,0
chr1	37961298	.	C	A	1499.31	PASS	AC=1;AF=0.704;AN=2;DP=771;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-filterInvariant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:337,0,389:12,0,11,1
chr1	37961308	.	A	C	796.61	PASS	AC=1;AF=0.611;AN=2;DP=658;set=variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant20-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:388,0,845:18,4,13,2
chr1	37961317	.	A	C	916.5	PASS	AC=1;AF=0.548;AN=2;DP=944;set=variant3-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:615,0,787:18,6,19,3
chr1	37961613	.	A	G	917.69	PASS	AC=1;AF=0.553;AN=2;DP=845;MQ=60;set=variant-variant6-variant9-variant12-variant15-variant17-variant18-variant22-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:589,0,511:9,13,11,14
chr1	37967707	.	ATTGACAGAGAAGATACATG	A	201.29	PASS	AC=2;AF=0.89;AN=2;DP=1537;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:78:1112,78,0:0,0,2,23
chr1	37967774	.	C	A	233.18	PASS	AC=2;AF=0.864;AN=2;DP=695;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:753,54,0:0,0,1,17
chr1	37975279	.	C	T	227.1	PASS	AC=2;AF=0.898;AN=2;DP=2200;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2049,192,0:0,0,21,43
chr1	37975312	.	T	C	467.75	PASS	AC=2;AF=0.881;AN=2;DP=1497;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1414,120,0:0,0,9,31
chr1	37978897	.	G	A	889.57	PASS	AC=1;AF=0.568;AN=2;DP=1774;MQ=60;set=variant3-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1096,0,1263:32,16,30,14
chr1	37979933	.	A	G	435.26	PASS	AC=1;AF=0.731;AN=2;DP=398;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:422,0,178:1,7,3,9
chr1	38002068	.	C	T	936.08	PASS	AC=1;AF=0.571;AN=2;DP=955;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,42:69:99:1152,0,711:19,8,28,14
chr1	38006359	.	A	G	74.91	PASS	AC=2;AF=0.881;AN=2;DP=2261;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1715,134,0:1,0,16,38
chr1	38019747	.	C	T	1000.95	PASS	AC=1;AF=0.559;AN=2;DP=1676;MQ=60;set=variant6-variant9-variant11-variant12-variant15-variant17-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,85:134:99:1937,0,1040:29,20,47,38
chr1	38022452	.	C	A	1113.73	PASS	AC=1;AF=0.704;AN=2;DP=2424;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:1011,0,1163:27,18,22,17
chr1	38023316	.	C	T	2209.05	PASS	AC=1;AF=0.565;AN=2;DP=4602;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:110,101:211:99:2227,0,2675:56,54,46,55
chr1	38030696	.	T	C	1114.41	PASS	AC=1;AF=0.704;AN=2;DP=1784;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1152,0,1275:21,26,20,25
chr1	38033047	.	T	G	154.72	PASS	AC=1;AF=0.704;AN=2;DP=274;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:180,0,147:4,0,5,0
chr1	38046920	.	G	T	661.79	PASS	AC=2;AF=0.864;AN=2;DP=2854;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2302,221,0:0,0,48,26
chr1	38049373	.	C	T	676.44	PASS	AC=1;AF=0.704;AN=2;DP=2018;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1178,0,973:22,22,29,20
chr1	38049552	.	C	G	718.11	PASS	AC=2;AF=0.872;AN=2;DP=2661;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1988,191,0:0,0,26,38
chr1	38052867	.	C	CA,CAA	437.94	PASS	AC=1,0;AF=0.648,0.019;AN=2;DP=1336;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant43-variant44	GT:DP:GQ:SB	0/1:67:99:25,7,27,8
chr1	38061572	.	G	T	448.21	PASS	AC=2;AF=0.864;AN=2;DP=2466;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2418,209,0:0,0,24,46
chr1	38077067	.	A	G	480.5	PASS	AC=2;AF=0.872;AN=2;DP=2213;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1661,141,0:0,0,35,12
chr1	38077349	.	CTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTA	C	396.34	PASS	AC=2;AF=0.864;AN=2;DP=2035;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2708,199,0:0,0,20,43
chr1	38078171	.	G	GGT,GGTGT,GGTGTGTGT	285.14	PASS	AC=1,1,0;AF=0.535,0.267,0.023;AN=2;DP=2203;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/2:41:99:1,0,22,18
chr1	38078300	.	A	G	1033.69	PASS	AC=1;AF=0.697;AN=2;DP=3726;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,55:120:99:1463,0,1775:34,31,34,21
chr1	38078630	.	A	T	821	PASS	AC=1;AF=0.563;AN=2;DP=1684;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,47:78:99:1158,0,628:14,17,16,31
chr1	38082122	.	G	A	1061.47	PASS	AC=1;AF=0.563;AN=2;DP=808;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:763,0,1154:11,11,10,10
chr1	38082123	.	C	T	1061.47	PASS	AC=1;AF=0.563;AN=2;DP=822;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:763,0,1154:11,11,10,10
chr1	38097790	.	C	T	439.3	PASS	AC=1;AF=0.58;AN=2;DP=697;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant18-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:731,0,815:8,16,3,18
chr1	38098035	.	C	G	395.38	PASS	AC=1;AF=0.595;AN=2;DP=798;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:498,0,609:7,9,9,12
chr1	38098036	.	G	A	262.62	PASS	AC=1;AF=0.58;AN=2;DP=860;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant18-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:305,0,834:9,12,7,9
chr1	38098129	.	T	G	201.21	PASS	AC=2;AF=0.989;AN=2;DP=496;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:424,33,0:0,0,1,10
chr1	38188841	.	G	A	1264.33	PASS	AC=2;AF=0.563;AN=2;DP=2667;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant17-variant21-variant22-variant29-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,203:205:99:6327,562,0:1,1,109,94
chr1	38192604	.	G	A	186.95	PASS	AC=2;AF=0.563;AN=2;DP=305;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant21-variant22-variant29-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:769,69,0:0,0,17,6
chr1	38196841	.	T	C	339.25	PASS	AC=2;AF=0.574;AN=2;DP=957;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant29-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:901,89,0:0,0,20,10
chr1	38226761	.	T	A	611.98	PASS	AC=1;AF=0.622;AN=2;DP=1100;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,24:29:38:452,0,38:4,1,13,11
chr1	38228797	.	A	T	106.77	PASS	AC=2;AF=0.824;AN=2;DP=231;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:361,27,0:0,0,2,7
chr1	38230983	.	T	C	1041.23	PASS	AC=2;AF=0.875;AN=2;DP=1355;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1064,87,0:0,0,6,23
chr1	38276381	.	C	T	4214.46	PASS	AC=2;AF=1;AN=2;DP=5765;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5043,495,0:0,0,91,74
chr1	38279666	.	CTT	CT,C,CTTT	749.46	PASS	AC=1,0,0;AF=0.488,0.023,0.023;AN=2;DP=12266;set=variant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:272:99:80,133,18,41
chr1	38293992	.	C	T	1581.8	PASS	AC=2;AF=1;AN=2;DP=1652;FS=0;MQRankSum=0.933;ReadPosRankSum=-0.4;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1365,117,0:0,0,11,28
chr1	38304469	.	CTT	CTTT,C,CTTTTTTTTTTTTTT,CTTTTTTTTT,CTTTTTTTT	47.06	PASS	AC=0,1,0,0,0;AF=0.1,0.1,0.1,0.2,0.2;AN=2;DP=100;set=variant12-variant15-variant24-variant36-variant40	GT:DP:GQ:SB	0/2:13:67:4,5,0,4
chr1	38332074	.	TCTCTCACA	T	404.07	PASS	AC=2;AF=0.545;AN=2;DP=1544;set=variant-variant6-variant7-variant10-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,51:53:99:1992,124,0:1,1,39,12
chr1	38422544	.	T	C	178.67	PASS	AC=2;AF=0.658;AN=2;DP=118;MQ=60;set=variant2-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant24-variant28-variant29-variant33-variant35-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:283,27,0:0,0,5,4
chr1	38422571	.	T	C	606.22	PASS	AC=2;AF=0.921;AN=2;DP=340;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:494,36,0:0,0,6,6
chr1	38422593	.	T	C	66.22	PASS	AC=2;AF=1;AN=2;DP=574;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:706,48,0:0,0,10,6
chr1	38423047	.	TC	T	37.74	PASS	AC=2;AF=0.833;AN=2;DP=75;FS=0;set=variant10-variant13-variant15-variant17-variant18-variant35-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:18:260,18,0:0,0,0,5
chr1	38423059	.	C	G	265.1	PASS	AC=2;AF=0.806;AN=2;DP=198;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:305,21,0:0,0,0,7
chr1	38423061	.	C	T	240.53	PASS	AC=2;AF=0.844;AN=2;DP=189;FS=0;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:21:305,21,0:0,0,0,6
chr1	38423521	.	T	G	283.25	PASS	AC=2;AF=0.563;AN=2;DP=263;FractionInformativeReads=1;set=variant-variant2-variant6-variant15-variant17-variant24-variant29-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1256,132,0:0,0,24,20
chr1	38423588	.	G	A	587.74	PASS	AC=2;AF=0.909;AN=2;DP=1296;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:972,96,0:0,0,11,21
chr1	38423853	.	G	C	459.74	PASS	AC=2;AF=0.909;AN=2;DP=863;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:713,51,0:0,0,15,2
chr1	38425629	.	CAAAA	CAA,CA,CAAA,C	677	PASS	AC=2,0,0,0;AF=0.438,0.263,0.088,0.013;AN=2;DP=1316;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:27:11:1,2,20,4
chr1	38425724	.	T	C	4173.76	PASS	AC=2;AF=0.909;AN=2;DP=5769;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:5032,498,0:0,0,96,70
chr1	38425895	.	T	C	2299.84	PASS	AC=2;AF=0.909;AN=2;DP=3945;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4075,381,0:0,0,51,76
chr1	38442547	.	G	A	3662.97	PASS	AC=2;AF=0.909;AN=2;DP=3833;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2968,280,0:0,0,38,56
chr1	38444749	.	T	C	366.76	PASS	AC=2;AF=0.677;AN=2;DP=1188;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1735,159,0:0,0,21,32
chr1	38446513	.	CTTTT	CTT,CT,C,CTTT,CTTTTTT	109.94	PASS	AC=0,0,0,2,0;AF=0.1,0.2,0.1,0.15,0.025;AN=2;DP=430;set=variant2-filterInvariant3-variant8-variant9-variant10-variant15-variant19-variant21-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant38-variant43	GT:DP:GQ:SB	4/4:6:17:0,0,1,5
chr1	38447615	.	G	T	766.07	PASS	AC=2;AF=0.886;AN=2;DP=854;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:790,66,0:0,0,4,18
chr1	38449910	.	T	C	1486.77	PASS	AC=2;AF=0.6;AN=2;DP=1924;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2759,275,0:0,0,55,37
chr1	38450367	.	A	G	2078.22	PASS	AC=2;AF=0.909;AN=2;DP=3383;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3078,317,0:0,0,50,56
chr1	38453576	.	A	C	673.86	PASS	AC=2;AF=0.615;AN=2;DP=2917;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3520,342,0:0,0,50,64
chr1	38455389	.	C	T	531.12	PASS	AC=2;AF=0.898;AN=2;DP=1311;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1014,102,0:0,0,14,20
chr1	38456106	.	G	A	334.35	PASS	AC=2;AF=0.677;AN=2;DP=1002;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1519,144,0:0,0,16,32
chr1	38462387	.	AACACAC	AACACACAC,AACAC,AAC,A,AACACACACAC	89.74	PASS	AC=0,2,0,0,0;AF=0.295,0.136,0.068,0.045,0.114;AN=2;DP=149;set=variant4-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant24-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant39-variant42-variant43	GT:DP:GQ:SB	2/2:6:18:0,0,3,3
chr1	38462898	.	T	A	1165.33	PASS	AC=2;AF=0.966;AN=2;DP=1648;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1671,117,0:0,0,22,16
chr1	38462905	.	C	G	1088.54	PASS	AC=2;AF=0.966;AN=2;DP=1703;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1671,117,0:0,0,21,18
chr1	38463504	.	C	T	1385.34	PASS	AC=2;AF=0.667;AN=2;DP=5214;set=variant-variant2-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,202:202:99:6248,606,0:0,0,89,113
chr1	38464639	.	C	G	1488.91	PASS	AC=2;AF=1;AN=2;DP=5007;FS=0;MQ=60;MQRankSum=1.272;ReadPosRankSum=1.678;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3754,358,0:0,0,77,43
chr1	38490066	.	CT	CTT,CTTT,C	114.27	PASS	AC=1,0,0;AF=0.481,0.019,0.037;AN=2;DP=762;set=variant-variant2-variant3-variant4-filterInvariant6-variant8-variant9-variant10-filterInvariant11-variant12-variant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-variant22-variant23-filterInvariant25-variant28-variant31-variant33-variant37-variant38-variant39-variant40-filterInvariant43	GT:DP:GQ:SB	0/1:14:53:0,5,1,8
chr1	39303995	.	C	T	1542.77	PASS	AC=2;AF=0.955;AN=2;DP=1989;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1919,159,0:0,0,36,17
chr1	39304247	.	A	G	5356.38	PASS	AC=2;AF=0.955;AN=2;DP=6253;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5657,554,0:0,0,78,107
chr1	39304728	.	A	G	3094.07	PASS	AC=2;AF=0.955;AN=2;DP=4556;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4124,375,0:0,0,82,43
chr1	39305002	.	AT	A,ATTT,ATT	624.88	PASS	AC=1,0,0;AF=0.464,0.012,0.036;AN=2;DP=6270;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:125:99:20,45,18,42
chr1	39305403	.	C	T	1481.48	PASS	AC=1;AF=0.607;AN=2;DP=1090;MQ=60;set=variant3-variant7-variant11-variant12-variant15-variant17-variant20-variant24-variant30-variant32-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,35:80:99:908,0,1157:15,30,12,23
chr1	39325063	.	T	C	585.12	PASS	AC=1;AF=0.743;AN=2;DP=2390;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:564,0,779:16,18,15,12
chr1	39329700	.	G	T	228.55	PASS	AC=1;AF=0.531;AN=2;DP=780;MQ=60;set=variant2-variant4-variant10-variant15-variant16-variant18-variant19-variant24-variant27-variant32-variant34-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:614,0,907:11,19,5,16
chr1	39330399	.	G	A	1384.29	PASS	AC=1;AF=0.607;AN=2;DP=1230;MQ=60;set=variant3-variant7-variant11-variant12-variant15-variant17-variant20-variant21-variant24-variant30-variant32-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,60:127:99:1563,0,1681:28,39,21,39
chr1	39333118	.	CAA	CA,C	137.11	PASS	AC=2,0;AF=0.643,0.143;AN=2;DP=43;FS=0;MQ=60;set=variant4-variant15-variant19-variant27-variant32-variant34-variant44	GT:DP:GQ:SB	1/1:10:29:0,0,9,1
chr1	39339256	.	G	A	2105.45	PASS	AC=1;AF=0.591;AN=2;DP=1342;MQ=60;set=variant3-variant7-variant11-variant15-variant20-variant21-variant30-variant32-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,84:165:99:2120,0,1984:36,45,40,44
chr1	39339998	.	A	AT	99.87	PASS	AC=1;AF=0.667;AN=2;DP=86;MQ=60;set=variant15-variant16-variant24-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:137,0,190:8,1,7,0
chr1	39340002	.	A	T	315.66	PASS	AC=1;AF=0.688;AN=2;DP=172;MQ=60;set=variant-variant3-variant7-variant11-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant30-variant32-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:187,0,137:7,0,8,1
chr1	39340607	.	A	G	686.98	PASS	AC=1;AF=0.5;AN=2;DP=895;MQ=60;set=variant2-variant4-variant15-variant16-variant18-variant19-variant24-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:64,39:103:99:1062,0,1753:35,29,19,20
chr1	39340862	.	A	G	2772.09	PASS	AC=1;AF=0.571;AN=2;DP=1872;MQ=60;set=variant3-variant7-variant11-variant12-variant15-variant17-variant20-variant21-variant24-variant30-variant32-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,89:161:99:2302,0,1843:32,40,45,44
chr1	39351659	.	G	A	1504.89	PASS	AC=2;AF=0.955;AN=2;DP=2462;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2664,240,0:0,0,31,49
chr1	39361569	.	G	A	698.12	PASS	AC=1;AF=0.571;AN=2;DP=433;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant12-variant15-variant17-variant20-variant21-variant24-variant30-variant32-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:392,0,527:12,5,10,4
chr1	39381451	.	G	C	1237.61	PASS	AC=1;AF=0.5;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant15-variant16-variant18-variant19-variant39	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:710,0,1367:6,16,6,13
chr1	39381452	.	G	A	1237.61	PASS	AC=1;AF=0.5;AN=2;DP=261;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant15-variant16-variant18-variant19-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:710,0,1367:5,16,6,13
chr1	39385086	.	A	C	1198.23	PASS	AC=2;AF=0.932;AN=2;DP=2093;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1377,120,0:0,0,12,28
chr1	39391986	.	G	C	1187.37	PASS	AC=1;AF=0.769;AN=2;DP=3716;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,43:109:99:1226,0,1783:44,22,32,11
chr1	39392232	.	G	T	1206.03	PASS	AC=1;AF=0.528;AN=2;DP=1097;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant9-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant26-variant33-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:966,0,1199:10,30,10,26
chr1	39407589	.	C	A	406.4	PASS	AC=1;AF=0.526;AN=2;DP=594;MQ=60;set=variant2-variant5-variant8-variant9-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant26-variant33-variant34-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:499,0,657:8,17,3,14
chr1	39457006	.	C	T	268.86	PASS	AC=2;AF=0.625;AN=2;DP=1003;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:751,81,0:0,0,15,12
chr1	39466955	.	CTTT	CTT,C,CT,CTTTTT	73.48	PASS	AC=0,0,1,0;AF=0.326,0.043,0.261,0.022;AN=2;DP=401;set=variant-variant3-variant6-variant8-variant15-variant17-variant18-filterInvariant19-variant20-variant23-variant24-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/3:11:94:2,5,1,3
chr1	39470364	.	A	G	2982.29	PASS	AC=2;AF=0.625;AN=2;DP=4808;MQ=60;set=variant2-variant3-variant4-variant8-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,237:238:99:7461,677,0:0,1,84,153
chr1	39491927	.	G	C	1370.53	PASS	AC=2;AF=0.884;AN=2;DP=1777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1543,147,0:0,0,34,15
chr1	39492080	.	G	T	2869.37	PASS	AC=2;AF=0.884;AN=2;DP=5018;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4506,458,0:0,0,70,83
chr1	39494666	.	CT	CTT,C	447.36	PASS	AC=1,0;AF=0.489,0.023;AN=2;DP=3408;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:79:99:8,17,20,34
chr1	39494687	.	G	A	1495.35	PASS	AC=2;AF=0.895;AN=2;DP=1896;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2545,192,0:0,0,12,47
chr1	39494760	.	G	A	505.31	PASS	AC=2;AF=0.895;AN=2;DP=529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:652,48,0:0,0,1,15
chr1	39549983	.	G	A	4357.57	PASS	AC=1;AF=0.583;AN=2;DP=9639;MQ=60;set=variant-variant4-variant6-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant26-variant27-variant32-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:292,295:587:99:6550,0,6746:132,160,141,154
chr1	39550210	.	C	T	449.67	PASS	AC=2;AF=0.966;AN=2;DP=829;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:668,51,0:0,0,2,15
chr1	39568765	.	T	C	14504.3	PASS	AC=1;AF=0.692;AN=2;DP=14206;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:249,185:434:99:4181,0,5983:133,116,101,84
chr1	39571095	.	C	T	433.28	PASS	AC=1;AF=0.625;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant13-variant15-variant20-variant21-variant30-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:738,0,695:19,7,21,13
chr1	39571211	.	T	C	1319.6	PASS	AC=1;AF=0.629;AN=2;DP=3407;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,69:141:99:1802,0,2017:48,24,38,31
chr1	39717566	.	T	C	1582.63	PASS	AC=2;AF=0.989;AN=2;DP=2304;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2510,231,0:0,0,27,50
chr1	39748921	.	G	A	746.2	PASS	AC=1;AF=0.744;AN=2;DP=3198;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,61:116:99:1523,0,1303:33,22,37,24
chr1	39757799	.	G	C	527.54	PASS	AC=1;AF=0.605;AN=2;DP=1623;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,44:106:99:875,0,1505:27,35,20,24
chr1	39758634	.	G	A	1017.4	PASS	AC=1;AF=0.605;AN=2;DP=1688;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,71:139:99:1591,0,1600:26,42,29,42
chr1	39758993	.	C	G	85.48	PASS	AC=1;AF=0.778;AN=2;DP=300;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,166:4,2,2,0
chr1	39763242	.	G	A	2129.81	PASS	AC=1;AF=0.744;AN=2;DP=5544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,82:179:99:1991,0,2644:64,33,49,33
chr1	39766041	.	A	G	971.27	PASS	AC=1;AF=0.605;AN=2;DP=1417;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1021,0,1166:9,23,19,21
chr1	39766055	.	C	T	796.96	PASS	AC=1;AF=0.744;AN=2;DP=2530;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:727,0,1405:16,20,10,19
chr1	39796844	.	CTTTTTTTTTTTTTT	CT,CTTT,CTT,C,CTTTTTTTTTTTTT,CTTTT,CTTTTTTTTTTT	141.85	PASS	AC=0,1,0,0,0,0,0;AF=0.013,0.526,0.145,0.013,0.013,0.013,0.013;AN=2;DP=886;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:19:99:6,2,6,5
chr1	39797055	.	A	G	1132.81	PASS	AC=1;AF=0.605;AN=2;DP=1778;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1279,0,1383:23,31,25,25
chr1	39801815	.	A	C	993.19	PASS	AC=1;AF=0.605;AN=2;DP=1603;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,43:99:99:1274,0,1451:26,30,22,21
chr1	39802381	.	A	C	92.18	PASS	AC=2;AF=0.75;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:9:565,9,0:0,1,3,14
chr1	39806610	.	C	T	1177.16	PASS	AC=2;AF=0.989;AN=2;DP=1861;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1846,180,0:0,0,24,36
chr1	39812518	.	C	T	305.57	PASS	AC=1;AF=0.605;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:324,0,246:6,3,9,3
chr1	39812620	.	G	T	2437.41	PASS	AC=2;AF=0.989;AN=2;DP=3767;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3328,320,0:0,0,68,39
chr1	39812822	.	C	A	4165.75	PASS	AC=2;AF=0.989;AN=2;DP=5628;MQ=60;MQRankSum=-0.751;ReadPosRankSum=-1.057;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4236,388,0:0,0,57,73
chr1	39815143	.	T	A	2176.33	PASS	AC=1;AF=0.605;AN=2;DP=3724;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,145:236:99:3512,0,2173:54,37,80,65
chr1	39815344	.	G	A	144.39	PASS	AC=1;AF=0.605;AN=2;DP=799;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:645,0,939:12,23,6,18
chr1	39823032	.	A	AT	1613.84	PASS	AC=1;AF=0.605;AN=2;DP=3204;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,85:175:99:1882,0,2030:37,53,32,53
chr1	39824718	.	C	G	106.42	PASS	AC=1;AF=0.6;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:338,0,385:8,3,9,1
chr1	39835817	.	A	G	696.36	PASS	AC=1;AF=0.605;AN=2;DP=1511;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,62:108:99:1380,0,1131:22,24,33,29
chr1	39843958	.	G	A	305.06	PASS	AC=1;AF=0.6;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:437,0,203:6,1,10,5
chr1	39880319	.	T	G	3493.55	PASS	AC=1;AF=0.605;AN=2;DP=5258;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,192:346:99:4957,0,4008:80,74,97,95
chr1	39880892	.	C	A	4262.66	PASS	AC=1;AF=0.643;AN=2;DP=2772;MQ=60;set=variant2-variant8-variant13-variant15-variant20-variant21-variant44	GT:AD:DP:GQ:PL:SB	0/1:245,227:472:99:5316,0,5734:113,132,103,124
chr1	39881040	.	G	C	1143.65	PASS	AC=1;AF=0.6;AN=2;DP=1350;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:1220,0,997:3,28,3,32
chr1	39881468	.	T	A	670.85	PASS	AC=1;AF=0.605;AN=2;DP=1049;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:557,0,699:12,14,11,10
chr1	39889677	.	G	A	698.91	PASS	AC=1;AF=0.6;AN=2;DP=1051;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,26:64:99:674,0,981:25,13,18,8
chr1	39893093	.	C	T	567.85	PASS	AC=1;AF=0.604;AN=2;DP=1199;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,28:73:99:638,0,1166:29,16,18,10
chr1	39894839	.	A	G	329.56	PASS	AC=1;AF=0.779;AN=2;DP=681;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:395,0,257:7,1,11,2
chr1	39895460	.	G	A	631.1	PASS	AC=1;AF=0.6;AN=2;DP=1436;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,42:81:99:1077,0,948:24,15,26,16
chr1	39900058	.	CT	C,CTT	102.62	PASS	AC=1,0;AF=0.469,0.031;AN=2;DP=1230;set=variant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-filterInvariant15-variant16-filterInvariant19-variant20-variant21-filterInvariant23-variant24-variant26-variant29-variant30-variant31-filterInvariant32-filterInvariant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:41:99:15,15,7,4
chr1	39908506	.	G	A	404.72	PASS	AC=1;AF=0.604;AN=2;DP=1483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:746,0,902:16,19,17,15
chr1	39908726	.	A	G	230.53	PASS	AC=1;AF=0.625;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:285,0,134:0,4,2,7
chr1	39913351	.	A	G	1464	PASS	AC=1;AF=0.605;AN=2;DP=2583;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant29-variant30-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,90:183:99:2270,0,2348:55,38,48,42
chr1	39914363	.	G	C	1108.19	PASS	AC=1;AF=0.662;AN=2;DP=3940;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,52:118:99:1203,0,1500:31,35,25,27
chr1	39918736	.	G	T	292.16	PASS	AC=1;AF=0.643;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant13-variant15-variant20-variant21-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:744,0,419:3,11,2,19
chr1	39927507	.	G	A	1786.71	PASS	AC=2;AF=0.989;AN=2;DP=1503;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1429,126,0:0,0,32,10
chr1	39929240	.	T	C	767.23	PASS	AC=1;AF=0.756;AN=2;DP=3137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,42:89:99:1000,0,1245:32,15,25,17
chr1	39952822	.	T	C	1517.75	PASS	AC=1;AF=0.909;AN=2;DP=3551;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,54:104:99:1563,0,1267:16,34,12,42
chr1	39957669	.	C	G	1004.74	PASS	AC=1;AF=0.5;AN=2;DP=272;MQ=60;set=variant-variant10-variant15-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:649,0,612:11,12,16,8
chr1	39957913	.	A	G	7354.32	PASS	AC=1;AF=0.909;AN=2;DP=20590;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:241,283:524:99:6561,0,5213:124,117,152,131
chr1	39957979	.	A	G	4225.43	PASS	AC=1;AF=0.5;AN=2;DP=2023;set=variant-variant10-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:317,226:543:99:4906,0,7589:155,162,105,121
chr1	39958027	.	C	T	2804.91	PASS	AC=1;AF=0.5;AN=2;DP=1335;set=variant-variant10-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:224,134:358:99:2939,0,5421:98,126,50,84
chr1	39958095	.	A	G	909.42	PASS	AC=1;AF=0.5;AN=2;DP=442;FractionInformativeReads=1;set=variant-variant10-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:79,34:113:99:875,0,2247:21,58,8,26
chr1	39958145	.	G	A	360.36	PASS	AC=1;AF=0.5;AN=2;DP=158;FS=0;FractionInformativeReads=1;set=variant-variant10-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:25,11:36:99:305,0,895:3,22,1,10
chr1	39976997	.	C	T	37.3	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=28;QD=18.65;SOR=2.303;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:66,6,0:0,0,0,2
chr1	39981596	.	A	G	167.58	PASS	AC=1;AF=0.5;AN=2;DP=426;set=variant-variant2-variant4-variant9-variant12-variant15-variant17-variant26-variant32-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:627,0,638:2,19,1,19
chr1	39988331	.	TTG	T	240.47	PASS	AC=1;AF=0.5;AN=2;DP=246;set=variant-variant2-variant4-variant9-variant12-variant15-variant17-variant26-variant32-variant37	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:355,0,694:5,13,5,5
chr1	39991474	.	A	C	2554.8	PASS	AC=1;AF=0.5;AN=2;DP=3893;FractionInformativeReads=1;set=variant-variant4-variant9-variant11-variant12-variant15-variant17-variant22-variant23-variant24-variant26-variant29-variant32-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:132,172:304:99:6743,0,5710:59,73,89,83
chr1	39991475	.	G	A	2554.8	PASS	AC=1;AF=0.5;AN=2;DP=3891;FractionInformativeReads=1;set=variant-variant4-variant9-variant11-variant12-variant15-variant17-variant22-variant23-variant24-variant26-variant29-variant32-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:131,172:303:99:6743,0,5710:59,72,89,83
chr1	39991588	.	G	T	1433.13	PASS	AC=2;AF=0.629;AN=2;DP=5129;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5759,537,0:0,0,66,113
chr1	40026851	.	A	C	673.67	PASS	AC=1;AF=0.625;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant13-variant15-variant20-variant21-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:411,0,626:9,15,7,10
chr1	40028180	.	A	G	1531.73	PASS	AC=1;AF=0.587;AN=2;DP=3668;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,87:164:99:2319,0,2038:28,49,32,55
chr1	40030823	.	C	T	1272.43	PASS	AC=1;AF=0.55;AN=2;DP=1400;MQ=60;set=variant2-variant4-variant9-variant12-variant15-variant17-variant26-variant32-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:76,100:176:99:2786,0,1790:43,33,68,32
chr1	40035686	.	C	T	1135.18	PASS	AC=1;AF=0.587;AN=2;DP=1463;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:717,0,962:16,22,10,19
chr1	40036847	.	G	C	506.85	PASS	AC=1;AF=0.587;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:494,0,415:11,3,13,2
chr1	40037206	.	G	A	398.82	PASS	AC=1;AF=0.625;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant13-variant15-variant20-variant21-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:606,0,468:7,10,10,9
chr1	40041371	.	G	GA	836.36	PASS	AC=1;AF=0.587;AN=2;DP=1436;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1376,0,1165:35,5,33,12
chr1	40041757	.	G	A	656.85	PASS	AC=1;AF=0.55;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant12-variant15-variant17-variant26-variant32-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:605,0,514:12,10,12,12
chr1	40089945	.	A	G	1432.26	PASS	AC=1;AF=0.652;AN=2;DP=2099;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,27:70:99:742,0,1020:26,17,20,7
chr1	40091119	.	A	G	1616.55	PASS	AC=1;AF=0.556;AN=2;DP=1159;MQ=60;set=variant2-variant4-variant9-variant10-variant12-variant15-variant17-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,75:153:99:1882,0,2056:34,44,35,40
chr1	40092089	.	T	C	2863.67	PASS	AC=2;AF=0.989;AN=2;DP=4372;MQ=60;MQRankSum=-2.503;ReadPosRankSum=0.928;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3401,303,0:0,0,56,45
chr1	40096053	.	T	C	606.18	PASS	AC=1;AF=0.591;AN=2;DP=960;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:590,0,1026:5,26,4,16
chr1	40098054	.	G	A	70.94	PASS	AC=1;AF=0.568;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:199,0,102:3,1,4,2
chr1	40098328	.	T	C	1444.18	PASS	AC=2;AF=0.989;AN=2;DP=2433;FractionInformativeReads=1;MQ=60;MQRankSum=0.56;ReadPosRankSum=0.56;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1516,147,0:0,0,26,23
chr1	40105462	.	C	T	484.77	PASS	AC=1;AF=0.75;AN=2;DP=50;FractionInformativeReads=1;MQ=60;MQRankSum=0.421;ReadPosRankSum=1.645;set=variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:513,0,485:9,9,9,13
chr1	40131089	.	G	T	208.69	PASS	AC=1;AF=0.538;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant11-variant12-variant15-variant18-variant20-variant24-variant25-variant26-variant27-variant29-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:515,0,356:9,1,15,2
chr1	40144301	.	G	C	229.53	PASS	AC=1;AF=0.531;AN=2;DP=509;MQ=60;set=variant3-variant5-variant11-variant12-variant15-variant18-variant20-variant24-variant25-variant26-variant27-variant29-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:238,0,228:6,4,6,3
chr1	40144486	.	A	C	2389.69	PASS	AC=1;AF=0.611;AN=2;DP=3398;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,53:128:99:1067,0,1730:36,39,27,26
chr1	40144818	.	A	T	3252.9	PASS	AC=1;AF=0.558;AN=2;DP=4529;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,102:185:99:2591,0,1918:34,49,42,60
chr1	40144857	.	G	GCTTCTTCT	4158.03	PASS	AC=1;AF=0.611;AN=2;DP=4140;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,43:102:99:1620,0,2316:23,36,20,23
chr1	40145297	.	C	T	3525.94	PASS	AC=1;AF=0.611;AN=2;DP=3927;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,53:117:99:1505,0,2018:19,45,18,35
chr1	40146253	.	T	C	1639.83	PASS	AC=2;AF=0.869;AN=2;DP=2816;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2701,236,0:0,0,40,39
chr1	40146417	.	G	T	1700.31	PASS	AC=1;AF=0.611;AN=2;DP=1968;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,23:61:99:636,0,1244:19,19,12,11
chr1	40147343	.	G	T	1236.54	PASS	AC=1;AF=0.614;AN=2;DP=1687;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:998,0,768:19,12,21,12
chr1	40149515	.	A	G	1113.36	PASS	AC=2;AF=0.869;AN=2;DP=1838;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1572,141,0:0,0,35,12
chr1	40149551	.	G	C	2772.71	PASS	AC=1;AF=0.607;AN=2;DP=2256;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:1297,0,1400:34,16,33,13
chr1	40149642	.	G	T	7388.87	PASS	AC=2;AF=0.869;AN=2;DP=10205;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,271:272:99:8235,802,0:1,0,165,106
chr1	40149870	.	C	G	1773.06	PASS	AC=2;AF=0.869;AN=2;DP=2625;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,80:83:99:3162,217,0:3,0,8,72
chr1	40149875	.	C	T	1505.94	PASS	AC=1;AF=0.558;AN=2;DP=1605;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:1064,0,1224:3,32,5,33
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	328.6	PASS	AC=2;AF=0.897;AN=2;DP=748;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:66:1016,66,0:0,0,2,21
chr1	40150156	.	G	A	1136.67	PASS	AC=1;AF=0.558;AN=2;DP=1732;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:664,0,522:13,11,16,16
chr1	40150370	.	C	T	1365.71	PASS	AC=2;AF=0.869;AN=2;DP=1720;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1092,108,0:0,0,12,24
chr1	40157143	.	C	T	1790.61	PASS	AC=1;AF=0.58;AN=2;DP=3391;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,79:155:99:1873,0,1919:38,38,45,34
chr1	40157260	.	C	A	1258.07	PASS	AC=1;AF=0.58;AN=2;DP=2845;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,76:133:99:1743,0,1448:28,29,36,40
chr1	40207169	.	T	G	973.03	PASS	AC=1;AF=0.786;AN=2;DP=2639;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,45:81:99:1188,0,912:16,20,15,30
chr1	40209408	.	A	G	82.71	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant25-variant31	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:241,0,476:11,5,5,4
chr1	40209650	.	C	CT	432.09	PASS	AC=1;AF=0.5;AN=2;DP=89;MQ=60;set=variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:469,0,587:11,17,10,12
chr1	40225621	.	G	C	547.11	PASS	AC=1;AF=0.5;AN=2;DP=1007;MQ=60;set=variant-variant5-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant25-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:1011,0,1191:21,22,21,18
chr1	40229297	.	A	AC	961.21	PASS	AC=1;AF=0.818;AN=2;DP=1598;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:1213,0,1869:37,25,24,18
chr1	40229319	.	G	A	966.62	PASS	AC=1;AF=0.783;AN=2;DP=1839;set=variant-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,52:123:99:1245,0,1857:41,30,28,24
chr1	40236074	.	A	C	1147.41	PASS	AC=1;AF=0.577;AN=2;DP=5320;set=variant-variant5-variant7-variant9-filterInvariant10-variant11-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,84:253:99:1811,0,3978:98,71,50,34
chr1	40253726	.	C	T	1507.47	PASS	AC=1;AF=0.652;AN=2;DP=3654;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,42:125:99:1131,0,2405:59,24,35,7
chr1	40253768	.	C	CA	5320.45	PASS	AC=1;AF=0.712;AN=2;DP=7648;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,121:279:99:4583,0,6792:97,61,89,32
chr1	40253770	.	C	T	5363.87	PASS	AC=1;AF=0.712;AN=2;DP=7909;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,122:290:99:4583,0,6792:103,65,89,33
chr1	40253786	.	C	T	6004.05	PASS	AC=1;AF=0.712;AN=2;DP=9935;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:204,165:369:99:3895,0,5046:122,82,110,55
chr1	40254522	.	G	A	417.84	PASS	AC=1;AF=0.814;AN=2;DP=2635;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,60:112:99:1386,0,1311:16,36,22,38
chr1	40306898	.	T	C	1511.91	PASS	AC=1;AF=0.66;AN=2;DP=1205;MQ=60;set=variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:742,0,708:15,14,18,14
chr1	40313107	.	G	A	850.52	PASS	AC=1;AF=0.571;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant4-variant14-variant15-variant25-variant26-variant27-variant30	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:875,0,665:7,14,17,11
chr1	40319587	.	A	C	2902.21	PASS	AC=1;AF=0.667;AN=2;DP=2746;MQ=60;set=variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,62:121:99:1443,0,1437:34,25,35,27
chr1	40349131	.	G	A	3786.57	PASS	AC=1;AF=0.66;AN=2;DP=2359;MQ=60;set=variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1097,0,1389:23,31,23,23
chr1	40349335	.	C	CT	147.79	PASS	AC=1;AF=0.571;AN=2;DP=153;MQ=60;set=variant4-variant14-variant15-variant25-variant26-variant27-variant30	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:33:119,0,33:0,3,2,5
chr1	40361783	.	G	C	769.91	PASS	AC=1;AF=0.533;AN=2;DP=629;MQ=60;set=variant4-variant5-variant14-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:386,0,352:6,8,8,7
chr1	40363054	.	G	C	4297.35	PASS	AC=1;AF=0.909;AN=2;DP=5869;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:87,79:166:99:1909,0,2386:45,42,48,31
chr1	40363629	.	A	T	1412.36	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=0.658;FractionInformativeReads=1;MQ=60;MQRankSum=-1.569;QD=11.03;ReadPosRankSum=-0.852;SOR=0.785;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:68,60:128:99:1441,0,1680:31,37,26,34
chr1	40367592	.	A	G	4027.89	PASS	AC=2;AF=0.966;AN=2;DP=4593;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2694,276,0:0,0,50,43
chr1	40367598	.	G	GCCC,GC,GCC,GCCCC	1857.34	PASS	AC=0,0,0,1;AF=0.375,0.125,0.042,0.042;AN=2;DP=1144;MQ=60;set=variant4-variant10-variant14-variant15-variant16-variant25-variant26-variant27-variant30-variant34-variant36-variant41	GT:DP:GQ:SB	0/4:89:99:32,29,14,14
chr1	40435157	.	A	G	662.73	PASS	AC=1;AF=0.5;AN=2;DP=1161;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant11-variant13-variant14-variant15-variant24-variant25-variant26-variant28-variant33-variant34-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,53:96:99:1300,0,1076:24,19,25,28
chr1	40435514	.	CT	C	4380.08	PASS	AC=2;AF=0.955;AN=2;DP=5373;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4118,420,0:0,0,81,59
chr1	40506239	.	G	A	1623.78	PASS	AC=2;AF=0.729;AN=2;DP=4800;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5392,545,0:0,0,87,95
chr1	40524866	.	T	C	1503.52	PASS	AC=2;AF=0.825;AN=2;DP=3308;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2574,243,0:0,0,50,31
chr1	40526003	.	T	C	329.95	PASS	AC=2;AF=0.857;AN=2;DP=875;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:721,60,0:0,0,4,16
chr1	40533266	.	T	G	786.22	PASS	AC=2;AF=1;AN=2;DP=2070;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2494,189,0:0,0,30,31
chr1	40533287	.	T	G	761.49	PASS	AC=2;AF=1;AN=2;DP=2037;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2236,165,0:0,0,23,29
chr1	40533315	.	T	G	816.01	PASS	AC=2;AF=1;AN=2;DP=1968;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:2033,138,0:0,0,11,33
chr1	40533320	.	T	G	861.01	PASS	AC=2;AF=1;AN=2;DP=1996;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2033,138,0:0,0,12,34
chr1	40533326	.	T	G	1041.01	PASS	AC=2;AF=1;AN=2;DP=2034;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2204,150,0:0,0,14,34
chr1	40533347	.	T	G	1134.85	PASS	AC=2;AF=1;AN=2;DP=2310;FS=0;MQRankSum=1.155;ReadPosRankSum=0.982;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2213,159,0:0,0,18,33
chr1	40536074	.	C	CT	7949.73	PASS	AC=2;AF=1;AN=2;DP=6552;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:6080,454,0:0,0,77,74
chr1	40539076	.	C	T	45.01	PASS	AC=2;AF=0.825;AN=2;DP=1376;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1681,158,0:0,0,21,32
chr1	40539203	.	A	ATGAT	184.52	PASS	AC=2;AF=0.8;AN=2;DP=1119;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2278,156,0:0,0,26,22
chr1	40539228	.	G	C	147.06	PASS	AC=2;AF=0.825;AN=2;DP=1314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1839,174,0:0,0,33,25
chr1	40539448	.	A	C	2128.31	PASS	AC=2;AF=0.825;AN=2;DP=5611;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4450,425,0:0,0,89,53
chr1	40545964	.	T	G	1052.58	PASS	AC=2;AF=0.846;AN=2;DP=3708;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2897,289,0:0,0,59,38
chr1	40547780	.	A	C	155.94	PASS	AC=2;AF=0.758;AN=2;DP=525;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:619,51,0:0,0,10,7
chr1	40547906	.	G	C	199.62	PASS	AC=2;AF=0.743;AN=2;DP=1015;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1158,78,0:0,0,12,14
chr1	40547913	.	G	A	221.36	PASS	AC=2;AF=0.743;AN=2;DP=1027;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1171,81,0:0,0,13,14
chr1	40547950	.	C	T	190.96	PASS	AC=2;AF=0.743;AN=2;DP=1009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:815,87,0:0,0,12,17
chr1	40548130	.	T	C	106.77	PASS	AC=2;AF=0.882;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant13-variant15-variant19-variant24-variant27-variant28-variant29-variant31-variant32-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr1	40555321	.	C	T	196.06	PASS	AC=2;AF=0.75;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:679,48,0:0,0,2,14
chr1	40556922	.	T	C	3702.75	PASS	AC=2;AF=1;AN=2;DP=4384;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4117,381,0:0,0,75,52
chr1	40557656	.	G	A	641.43	PASS	AC=2;AF=0.803;AN=2;DP=1239;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1095,105,0:0,0,25,10
chr1	40558256	.	C	G	1211.59	PASS	AC=2;AF=1;AN=2;DP=1106;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.896;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1128,90,0:0,0,4,26
chr1	40562993	.	T	C	351.79	PASS	AC=2;AF=0.86;AN=2;DP=2432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2042,186,0:0,0,26,36
chr1	40655039	.	A	G	896.26	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=1.97;FractionInformativeReads=1;MQ=60;MQRankSum=0.565;QD=20.84;ReadPosRankSum=0.942;SOR=0.307;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,27:43:99:924,0,538:1,15,4,23
chr1	40703244	.	G	A	1847.33	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=3.38;FractionInformativeReads=1;MQ=60;MQRankSum=-0.136;QD=15.27;ReadPosRankSum=0.859;SOR=0.446;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:47,74:121:99:1876,0,1145:20,27,37,37
chr1	40737516	.	T	G	1086.67	PASS	AC=2;AF=1;AN=2;DP=1325;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1173,90,0:0,0,25,5
chr1	40773123	.	G	C	706.24	PASS	AC=1;AF=0.5;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant15-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:901,0,1135:28,14,23,10
chr1	40775926	.	A	G	1058.96	PASS	AC=1;AF=0.5;AN=2;DP=454;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant27-variant29-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:1087,0,1191:24,26,20,26
chr1	40777884	.	CTT	CT,CTTT,C	61.8	PASS	AC=0,1,0;AF=0.222,0.259,0.019;AN=2;DP=1398;MQ=60;set=filterInvariant-filterInvariant5-variant6-variant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-variant19-filterInvariant23-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant35-variant38-filterInvariant39-variant41-variant42	GT:DP:GQ:SB	0/2:49:99:11,13,11,14
chr1	40781185	.	A	C	669.7	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2316;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:76,24:100:86:86,0,3014:21,55,24,0
chr1	40840292	.	T	TGA	131.72	PASS	AC=1;AF=0.5;AN=2;DP=133;set=filterInvariant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:66,17:83:99:169,0,2581:45,21,10,7
chr1	40840294	.	T	A	107.43	PASS	AC=1;AF=0.5;AN=2;DP=537;set=variant11-variant12-variant13-variant15-variant27-variant29-variant30-filterInvariant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,23:84:99:522,0,1572:40,21,15,8
chr1	40840296	.	T	A,TGA,TGTGA	973.38	PASS	AC=2,0,0;AF=0.317,0.329,0.061;AN=2;DP=2299;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant2-variant44	GT:DP:GQ:SB	1/1:91:99:3,1,57,30
chr1	40859213	.	CTTT	CT,CTT,CTTTT,C	217.64	PASS	AC=0,1,0,0;AF=0.203,0.297,0.016,0.078;AN=2;DP=1158;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant13-filterInvariant15-filterInvariant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:17:74:5,5,0,7
chr1	40879636	.	T	C	460.98	PASS	AC=1;AF=0.93;AN=2;DP=555;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,120:3,1,2,1
chr1	40879808	.	G	T,C	2011.23	PASS	AC=2,0;AF=0.898,0.068;AN=2;DP=3576;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:95:99:0,0,55,40
chr1	40881041	.	C	G	4550.02	PASS	AC=1;AF=0.92;AN=2;DP=6688;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:94,95:189:99:2160,0,2319:43,51,42,53
chr1	40882900	.	CTT	CT,C,CTTT	594	PASS	AC=1,0,0;AF=0.41,0.077,0.026;AN=2;DP=4135;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:DP:GQ:SB	0/1:72:99:16,24,7,25
chr1	40923019	.	G	A	1452.74	PASS	AC=1;AF=0.587;AN=2;DP=3132;MQ=60;set=variant4-variant5-variant6-variant9-variant15-variant17-variant18-variant19-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,81:171:99:1820,0,2171:45,45,37,44
chr1	40943156	.	A	G	2501.16	PASS	AC=2;AF=1;AN=2;DP=2781;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2574,231,0:0,0,48,29
chr1	40955375	.	G	C	197.36	PASS	AC=1;AF=0.605;AN=2;DP=253;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant15-variant17-variant20-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:349,0,282:2,9,2,9
chr1	40974425	.	T	C	329.07	PASS	AC=1;AF=0.5;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant15-variant17-variant18-variant24-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,17:50:99:411,0,954:21,12,12,5
chr1	40974799	.	T	C	555.96	PASS	AC=2;AF=0.694;AN=2;DP=2822;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2926,273,0:0,0,36,55
chr1	40975104	.	C	T	729.86	PASS	AC=2;AF=1;AN=2;DP=2078;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.027;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1102,108,0:0,0,19,17
chr1	40975260	.	G	C	90.71	PASS	AC=2;AF=0.694;AN=2;DP=1498;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1573,150,0:0,0,28,22
chr1	40980559	.	G	A	1643.75	PASS	AC=1;AF=0.605;AN=2;DP=1792;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant15-variant17-variant20-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,34:97:99:764,0,1624:32,31,19,15
chr1	40980731	.	G	T	1297.01	PASS	AC=2;AF=0.694;AN=2;DP=3085;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4165,409,0:0,0,66,71
chr1	40998811	.	A	G	999.13	PASS	AC=1;AF=0.605;AN=2;DP=1403;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant15-variant17-variant20-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,38:99:99:985,0,1510:26,35,16,22
chr1	40998902	.	A	G	530.41	PASS	AC=1;AF=0.5;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant15-variant17-variant18-variant24-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:687,0,547:7,15,8,18
chr1	41007124	.	G	A	591.71	PASS	AC=1;AF=0.5;AN=2;DP=405;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant15-variant18-variant24-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:820,0,614:18,4,20,8
chr1	41007403	.	T	A	863.5	PASS	AC=1;AF=0.605;AN=2;DP=1016;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant15-variant17-variant20-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,43:81:99:1101,0,1028:13,25,14,29
chr1	41010149	.	G	A	31.7	PASS	AC=1;AF=0.667;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant11-variant15-variant17-variant20-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:27:124,0,27:1,0,2,2
chr1	41010378	.	C	T	2495.12	PASS	AC=1;AF=0.605;AN=2;DP=3429;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant15-variant17-variant20-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,84:197:99:2051,0,2835:62,51,47,37
chr1	41010454	.	A	G	2778.78	PASS	AC=1;AF=0.5;AN=2;DP=1930;MQ=60;set=variant5-variant6-variant7-variant15-variant17-variant18-variant24-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,124:219:99:3032,0,2234:51,44,64,60
chr1	41013015	.	C	T	942.62	PASS	AC=1;AF=0.5;AN=2;DP=848;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant15-variant18-variant24-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,39:96:99:885,0,1485:28,29,14,25
chr1	41013260	.	C	T	369.68	PASS	AC=2;AF=0.694;AN=2;DP=1344;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1246,128,0:0,0,24,19
chr1	41087169	.	A	G	767.62	PASS	AC=1;AF=0.542;AN=2;DP=509;MQ=60;set=variant4-variant5-variant10-variant11-variant15-variant22-variant27-variant29-variant30-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:609,0,823:14,18,13,12
chr1	41088205	.	G	A	616.85	PASS	AC=1;AF=0.5;AN=2;DP=471;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant11-variant15-variant22-variant27-variant29-variant30-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:585,0,845:19,12,11,11
chr1	41088577	.	C	T	356.98	PASS	AC=1;AF=0.5;AN=2;DP=455;MQ=60;set=variant4-variant5-variant6-variant11-variant15-variant22-variant27-variant29-variant30-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:451,0,747:14,11,8,8
chr1	41090250	.	A	G	438.52	PASS	AC=1;AF=0.643;AN=2;DP=1401;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:789,0,563:9,12,15,13
chr1	41091127	.	T	C	328.38	PASS	AC=1;AF=0.833;AN=2;DP=2308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:789,0,539:11,9,15,13
chr1	41092018	.	G	A	761.97	PASS	AC=1;AF=0.5;AN=2;DP=527;MQ=60;set=variant4-variant11-variant15-variant22-variant27-variant29-variant30-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:486,0,729:15,12,11,7
chr1	41101572	.	A	G	523.55	PASS	AC=1;AF=0.833;AN=2;DP=2281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,34:73:99:847,0,991:24,15,18,16
chr1	41107360	.	T	C	2240.71	PASS	AC=1;AF=0.821;AN=2;DP=10531;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,115:246:99:2877,0,3295:72,59,65,50
chr1	41177943	.	T	C	1025.65	PASS	AC=1;AF=0.814;AN=2;DP=2241;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:644,0,634:16,7,18,4
chr1	41178228	.	AT	A	540.14	PASS	AC=1;AF=0.814;AN=2;DP=2709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:810,0,490:5,19,7,28
chr1	41188915	.	A	G	124.38	PASS	AC=1;AF=0.529;AN=2;DP=531;MQ=60;set=variant-variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:328,0,287:6,5,4,7
chr1	41201257	.	C	G	435.11	PASS	AC=1;AF=0.529;AN=2;DP=920;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:631,0,697:14,15,14,11
chr1	41204569	.	C	T	1167.78	PASS	AC=1;AF=0.657;AN=2;DP=3153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,45:109:99:1037,0,1720:26,38,21,24
chr1	41215075	.	T	A	708.83	PASS	AC=1;AF=0.595;AN=2;DP=1417;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant13-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant32-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1228,0,912:24,13,33,11
chr1	41224008	.	C	T	103.93	PASS	AC=1;AF=0.529;AN=2;DP=703;MQ=60;set=variant-variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:385,0,537:9,13,6,9
chr1	41229122	.	G	T	135.15	PASS	AC=1;AF=0.5;AN=2;DP=136;FractionInformativeReads=1;set=variant-variant2-variant14-variant15-variant18-variant19-variant24-variant31-variant32-variant33-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:76,0,77:0,2,1,2
chr1	41232194	.	T	C	135.18	PASS	AC=1;AF=0.531;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:376,0,305:8,2,10,0
chr1	41235177	.	G	C	629.75	PASS	AC=1;AF=0.617;AN=2;DP=1218;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:921,0,934:7,25,9,26
chr1	41235946	.	G	A	312.97	PASS	AC=1;AF=0.609;AN=2;DP=1312;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant13-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant32-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:822,0,1000:23,17,23,6
chr1	41236837	.	CT	C,CTT	1653.95	PASS	AC=1,0;AF=0.5,0.026;AN=2;DP=3299;MQ=60;set=variant-variant2-variant7-variant9-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:185:99:43,38,49,55
chr1	41237388	.	A	G	722.83	PASS	AC=1;AF=0.556;AN=2;DP=964;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:811,0,851:7,23,6,22
chr1	41284080	.	T	C	64.68	PASS	AC=1;AF=0.5;AN=2;DP=83;MQ=60;set=variant4-variant12-filterInvariant15	GT:AD:DP:GQ:PL:SB	0/1:23,5:28:70:70,0,1165:9,14,5,0
chr1	41284084	.	T	C	55.25	PASS	AC=1;AF=0.5;AN=2;DP=81;MQ=60;set=variant4-filterInvariant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:23,5:28:70:70,0,1165:9,14,5,0
chr1	41284089	.	A	C	47.98	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=filterInvariant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:21,5:26:76:76,0,1025:9,12,5,0
chr1	41284366	.	G	C	980.79	PASS	AC=1;AF=0.738;AN=2;DP=3931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1120,0,1434:20,36,14,32
chr1	41284406	.	A	G	491.66	PASS	AC=1;AF=0.738;AN=2;DP=2540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:711,0,850:9,21,5,18
chr1	41284509	.	C	G	175.7	PASS	AC=1;AF=0.75;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:273,0,144:1,4,5,3
chr1	41284520	.	A	G	220.7	PASS	AC=1;AF=0.75;AN=2;DP=463;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:301,0,455:3,5,5,3
chr1	41284527	.	T	G	136.72	PASS	AC=1;AF=0.756;AN=2;DP=424;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:270,0,458:3,5,5,2
chr1	41285087	.	T	C	2431.51	PASS	AC=1;AF=0.738;AN=2;DP=14026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:197,179:376:99:4307,0,4699:99,98,93,86
chr1	41285171	.	C	A	1911.54	PASS	AC=1;AF=0.5;AN=2;DP=3468;MQ=60;set=variant-variant2-variant3-variant10-variant13-variant14-variant15-variant16-variant18-variant23-variant29-variant30-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,126:239:99:2903,0,2851:42,71,45,81
chr1	41289579	.	C	T	75.41	PASS	AC=1;AF=0.577;AN=2;DP=418;MQ=60;set=variant2-variant3-variant4-variant6-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:224,0,399:10,6,6,2
chr1	41289993	.	T	C	1605.58	PASS	AC=1;AF=0.543;AN=2;DP=2701;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant18-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,87:153:99:2038,0,1457:27,39,41,46
chr1	41296828	.	T	G	2400.44	PASS	AC=1;AF=0.538;AN=2;DP=2082;MQ=60;set=variant3-variant4-variant7-variant13-variant15-variant17-variant19-variant20-variant27-variant28-variant34-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,102:214:99:2510,0,2704:73,39,64,38
chr1	41298652	.	T	C	540.87	PASS	AC=2;AF=0.75;AN=2;DP=5367;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4421,452,0:0,0,89,62
chr1	41300690	.	G	A	1391.02	PASS	AC=1;AF=0.5;AN=2;DP=505;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant19-variant34	GT:AD:DP:GQ:PL:SB	0/1:75,47:122:99:1082,0,1887:40,35,24,23
chr1	41301019	.	T	C	125.41	PASS	AC=1;AF=0.696;AN=2;DP=328;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:136,0,153:1,3,1,4
chr1	41301034	.	G	C	74.42	PASS	AC=1;AF=0.5;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant17-variant18-variant20-variant23-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:115,0,156:1,3,1,3
chr1	41305217	.	A	T	1659.74	PASS	AC=1;AF=0.93;AN=2;DP=2866;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,49:107:99:1094,0,1410:30,28,26,23
chr1	41326886	.	C	G	1753.75	PASS	AC=1;AF=0.5;AN=2;DP=595;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant18-variant26-variant37	GT:AD:DP:GQ:PL:SB	0/1:47,75:122:99:2001,0,1204:25,22,39,36
chr1	41327281	.	C	A	3568.01	PASS	AC=1;AF=0.625;AN=2;DP=1299;MQ=60;set=variant-variant2-variant13-variant15-variant16-variant26-variant28-variant32-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,64:117:99:1475,0,1275:31,22,34,30
chr1	41327407	.	G	A	1285.22	PASS	AC=1;AF=0.5;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant18-variant26-variant37	GT:AD:DP:GQ:PL:SB	0/1:50,29:79:99:618,0,1213:21,29,12,17
chr1	41327627	.	T	C	1551.02	PASS	AC=1;AF=0.5;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant18-variant26-variant37	GT:AD:DP:GQ:PL:SB	0/1:42,18:60:99:662,0,1669:25,17,12,6
chr1	41327630	.	C	G	1551.02	PASS	AC=1;AF=0.5;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant18-variant26-variant37	GT:AD:DP:GQ:PL:SB	0/1:42,19:61:99:665,0,1646:24,18,13,6
chr1	41327705	.	A	T	1287.82	PASS	AC=1;AF=0.5;AN=2;DP=476;MQ=60;set=variant4-variant12-variant15-variant18-variant26-variant37	GT:AD:DP:GQ:PL:SB	0/1:62,34:96:99:709,0,1657:33,29,19,15
chr1	41327746	.	C	A	1408.15	PASS	AC=1;AF=0.5;AN=2;DP=605;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant15-variant16-variant26-variant38	GT:AD:DP:GQ:PL:SB	0/1:54,62:116:99:1568,0,1332:30,24,32,30
chr1	41327871	.	C	A	2078.6	PASS	AC=1;AF=0.5;AN=2;DP=566;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant18-variant26-variant37	GT:AD:DP:GQ:PL:SB	0/1:72,57:129:99:1338,0,1858:37,35,31,26
chr1	41327873	.	G	C	3065.14	PASS	AC=2;AF=0.658;AN=2;DP=3416;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4825,396,0:0,0,69,63
chr1	41328112	.	G	C	225.24	PASS	AC=1;AF=0.636;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant15-variant16-variant26-variant28-variant32-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:262,0,348:1,9,3,7
chr1	41449291	.	CT	C,CTT	265.85	PASS	AC=1,0;AF=0.521,0.083;AN=2;DP=515;set=variant3-variant4-variant7-variant8-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant18-variant20-variant23-filterInvariant24-filterInvariant26-variant27-variant28-variant29-variant33-variant35-variant36-variant37-filterInvariant40	GT:DP:GQ:SB	0/1:12:57:0,4,0,8
chr1	41452880	.	G	A	143.66	PASS	AC=1;AF=0.643;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant13-variant15-variant24-variant26-variant28-variant30-variant32-variant33-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:300,0,264:7,0,8,1
chr1	41453286	.	GT	G	1902.43	PASS	AC=2;AF=0.92;AN=2;DP=1757;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2132,172,0:0,0,13,44
chr1	41456821	.	T	G	1084.49	PASS	AC=1;AF=0.5;AN=2;DP=267;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant20-variant22-variant36	GT:AD:DP:GQ:PL:SB	0/1:25,37:62:99:812,0,611:17,8,25,12
chr1	41461513	.	G	C	810.35	PASS	AC=1;AF=0.542;AN=2;DP=258;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:285,0,375:9,5,7,3
chr1	41462986	.	T	C	671.25	PASS	AC=1;AF=0.542;AN=2;DP=357;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:277,0,337:9,3,8,4
chr1	41466550	.	T	A	37.74	PASS	AC=2;AF=0.72;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant34-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:532,45,0:0,0,12,3
chr1	41466681	.	CCT	C	789.01	PASS	AC=1;AF=0.5;AN=2;DP=528;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,25:61:99:942,0,1566:19,17,16,9
chr1	41466803	.	G	A	873.3	PASS	AC=2;AF=0.677;AN=2;DP=1678;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2106,203,0:0,0,30,38
chr1	41473283	.	A	G	284.36	PASS	AC=1;AF=0.545;AN=2;DP=698;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,25:65:99:698,0,1249:13,27,8,17
chr1	41474400	.	C	G	3393.2	PASS	AC=1;AF=0.542;AN=2;DP=1122;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:52,49:101:99:1284,0,1391:26,26,20,29
chr1	41475085	.	A	G	1910.38	PASS	AC=2;AF=0.743;AN=2;DP=2896;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2900,285,0:0,0,54,41
chr1	41477444	.	G	A	1008.17	PASS	AC=1;AF=0.5;AN=2;DP=1197;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,60:144:99:1403,0,2207:35,49,23,37
chr1	41482976	.	A	G	892.48	PASS	AC=1;AF=0.5;AN=2;DP=242;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,41:115:99:921,0,1714:41,33,25,16
chr1	41483951	.	G	C	205.56	PASS	AC=1;AF=0.609;AN=2;DP=569;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:355,0,450:2,11,3,10
chr1	41485902	.	C	G	600.79	PASS	AC=1;AF=0.609;AN=2;DP=1516;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:906,0,893:19,9,24,13
chr1	41486408	.	G	A	3412.33	PASS	AC=1;AF=0.542;AN=2;DP=905;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:53,40:93:99:1012,0,1481:25,28,22,18
chr1	41486600	.	C	CAG	1059.54	PASS	AC=2;AF=0.677;AN=2;DP=1869;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2559,177,0:0,0,23,34
chr1	41487492	.	C	G	1343.8	PASS	AC=1;AF=0.5;AN=2;DP=782;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,50:84:99:1391,0,758:18,16,28,22
chr1	41487621	.	A	C	1220.98	PASS	AC=1;AF=0.5;AN=2;DP=1221;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,58:117:99:1500,0,1403:32,27,26,32
chr1	41488168	.	G	T	5000.68	PASS	AC=1;AF=0.542;AN=2;DP=1517;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:62,74:136:99:1745,0,1685:34,28,40,34
chr1	41488506	.	C	T	1524.04	PASS	AC=1;AF=0.5;AN=2;DP=1187;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,59:140:99:1491,0,2104:39,42,26,33
chr1	41488722	.	T	G	1947.42	PASS	AC=1;AF=0.5;AN=2;DP=2199;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:113,143:256:99:3119,0,2590:54,59,72,71
chr1	41488904	.	G	A	1197.49	PASS	AC=1;AF=0.542;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:588,0,273:3,8,3,15
chr1	41493111	.	A	G	509.34	PASS	AC=2;AF=0.71;AN=2;DP=1652;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1456,135,0:0,0,25,20
chr1	41493424	.	C	CT	978.63	PASS	AC=1;AF=0.5;AN=2;DP=1105;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1490,0,1260:25,25,35,22
chr1	41493811	.	C	T	3660.18	PASS	AC=1;AF=0.542;AN=2;DP=1284;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:42,55:97:99:1450,0,1129:26,16,30,25
chr1	41494222	.	G	T	2890.73	PASS	AC=2;AF=0.719;AN=2;DP=3505;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3259,320,0:0,0,59,48
chr1	41499540	.	T	C	490.26	PASS	AC=1;AF=0.545;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:470,0,539:14,4,13,2
chr1	41540853	.	A	T	4040.78	PASS	AC=2;AF=0.826;AN=2;DP=5169;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:6128,418,0:0,0,75,58
chr1	41540861	.	T	C	4235.78	PASS	AC=2;AF=0.826;AN=2;DP=5668;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:6397,442,0:0,0,84,63
chr1	41541166	.	C	T	670.92	PASS	AC=1;AF=0.5;AN=2;DP=576;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:563,0,619:9,14,9,13
chr1	41582429	.	T	TA	710.93	PASS	AC=1;AF=0.542;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:355,0,356:9,3,12,0
chr1	41582470	.	T	C	594.14	PASS	AC=1;AF=0.5;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:642,0,958:24,9,17,10
chr1	41582760	.	G	A	292.79	PASS	AC=1;AF=0.5;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:252,0,441:3,12,2,7
chr1	41608389	.	A	G	948.42	PASS	AC=1;AF=0.545;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:248,0,316:8,1,7,2
chr1	41618442	.	A	T	1140.11	PASS	AC=2;AF=0.826;AN=2;DP=2184;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1729,159,0:0,0,17,36
chr1	41627206	.	C	T	687.31	PASS	AC=1;AF=0.5;AN=2;DP=433;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant17-variant18-variant22-variant25-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:717,0,736:9,16,9,20
chr1	41651952	.	G	A	4561.56	PASS	AC=1;AF=0.542;AN=2;DP=1483;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant18-variant20-variant22-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:61,68:129:99:1702,0,1601:23,38,29,39
chr1	41707651	.	C	A	387.52	PASS	AC=1;AF=0.55;AN=2;DP=190;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant15-variant20-variant27-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:8,20:28:99:507,0,194:5,3,11,9
chr1	41707766	.	T	C	376.08	PASS	AC=2;AF=1;AN=2;DP=633;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:666,69,0:0,0,9,14
chr1	41848060	.	C	T	769.14	PASS	AC=1;AF=0.643;AN=2;DP=2183;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1138,0,957:20,15,27,16
chr1	41848296	.	G	A	1822.14	PASS	AC=1;AF=0.643;AN=2;DP=8765;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:132,126:258:99:2735,0,3089:55,77,53,73
chr1	41849018	.	G	C	1445.92	PASS	AC=2;AF=1;AN=2;DP=1277;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.116;ReadPosRankSum=1.502;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1495,120,0:0,0,17,23
chr1	41849340	.	A	C	34.68	PASS	AC=1;AF=0.676;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:74:118,0,74:0,2,1,3
chr1	41944690	.	C	T	1085.32	PASS	AC=1;AF=0.538;AN=2;DP=889;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant10-variant15-variant20-variant21-variant23-variant28-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1043,0,885:20,15,24,19
chr1	41946631	.	A	G	1628.4	PASS	AC=1;AF=0.5;AN=2;DP=872;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant15-variant20-variant28-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,50:108:99:1357,0,1592:28,30,27,23
chr1	41949595	.	G	A	1305.46	PASS	AC=2;AF=1;AN=2;DP=2782;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2121,194,0:0,0,45,20
chr1	41949628	.	A	C	1569.72	PASS	AC=1;AF=0.86;AN=2;DP=3526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,36:95:99:862,0,1479:36,23,23,13
chr1	41950312	.	T	C	4189.37	PASS	AC=2;AF=0.943;AN=2;DP=5966;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5547,522,0:0,0,70,104
chr1	41950473	.	G	A	57.81	PASS	AC=1;AF=0.593;AN=2;DP=356;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:291,0,247:0,7,2,8
chr1	41972198	.	A	T	4969.69	PASS	AC=1;AF=0.706;AN=2;DP=11194;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:200,198:398:99:4737,0,4886:106,94,100,98
chr1	41972270	.	TTTTTG	T	2712.91	PASS	AC=1;AF=0.706;AN=2;DP=10999;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,150:337:99:3033,0,6997:97,90,73,77
chr1	41972274	.	TG	T	1717.53	PASS	AC=1;AF=0.5;AN=2;DP=4179;set=variant-variant3-variant5-variant11-variant14-variant15-variant26-variant28-variant29-variant34-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:219,102:321:99:1419,0,7349:107,112,49,53
chr1	41972283	.	C	T	3405.85	PASS	AC=1;AF=0.778;AN=2;DP=11513;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,148:322:99:3024,0,5617:86,88,74,74
chr1	41972555	.	GTTTCT	G	7604.85	PASS	AC=1;AF=0.706;AN=2;DP=13202;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:238,212:450:99:8107,0,9484:101,137,88,124
chr1	41973095	.	A	G	1768.27	PASS	AC=2;AF=0.805;AN=2;DP=3644;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3398,347,0:0,0,59,57
chr1	41973400	.	G	A	874.5	PASS	AC=1;AF=0.538;AN=2;DP=907;MQ=60;set=variant2-variant4-variant13-variant15-variant19-variant22-variant24-variant26-variant28-variant30-variant31-variant33-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,35:84:99:845,0,1179:25,24,17,18
chr1	41973908	.	C	T	280.37	PASS	AC=1;AF=0.706;AN=2;DP=1202;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:627,0,553:11,9,11,14
chr1	41974164	.	C	G	478.43	PASS	AC=1;AF=0.643;AN=2;DP=601;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant14-variant15-variant16-variant26-variant28-variant29-variant34-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:739,0,639:12,14,14,18
chr1	41974258	.	G	A	669.6	PASS	AC=1;AF=0.765;AN=2;DP=2453;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:840,0,1191:18,23,20,19
chr1	41975149	.	G	C	4372.78	PASS	AC=2;AF=1;AN=2;DP=6340;FS=0;MQ=60;MQRankSum=1.6;ReadPosRankSum=1.07;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4774,479,0:0,0,86,74
chr1	41976328	.	T	C	2949.85	PASS	AC=2;AF=0.977;AN=2;DP=3125;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,63:64:99:2011,154,0:1,0,28,35
chr1	41976529	.	C	T	2850.18	PASS	AC=1;AF=0.5;AN=2;DP=1920;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant12-variant14-variant15-variant21-variant24-variant39	GT:AD:DP:GQ:PL:SB	0/1:145,133:278:99:2960,0,3251:74,71,69,64
chr1	41978359	.	G	T	651.9	PASS	AC=2;AF=0.977;AN=2;DP=580;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:489,39,0:0,0,11,2
chr1	41978566	.	T	G	3282.22	PASS	AC=2;AF=1;AN=2;DP=4240;FS=0;MQRankSum=1.155;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3329,306,0:0,0,54,48
chr1	41978825	.	C	G	8438.49	PASS	AC=2;AF=1;AN=2;DP=12233;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,352:352:99:10763,1053,0:0,0,197,155
chr1	41979156	.	A	G	3354.13	PASS	AC=1;AF=0.613;AN=2;DP=4047;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,49:102:99:1351,0,1489:22,31,17,32
chr1	41983912	.	C	A	2939.6	PASS	AC=2;AF=0.977;AN=2;DP=3551;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3574,314,0:0,0,72,33
chr1	41990461	.	G	A	532.71	PASS	AC=1;AF=0.5;AN=2;DP=404;MQ=60;set=variant9-variant12-variant14-variant15-variant21-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:798,0,971:22,15,18,15
chr1	42041479	.	A	C	1146.41	PASS	AC=1;AF=0.567;AN=2;DP=2712;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,50:109:99:1241,0,1480:27,32,27,23
chr1	42045302	.	G	A	1465.02	PASS	AC=2;AF=0.989;AN=2;DP=1363;FS=0;MQ=60;MQRankSum=-0.758;ReadPosRankSum=0.993;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1191,104,0:0,0,27,8
chr1	42045747	.	T	C	1696.9	PASS	AC=1;AF=0.5;AN=2;DP=1382;MQ=60;set=variant9-variant12-variant14-variant15-variant21-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:102,102:204:99:2566,0,2418:52,50,50,52
chr1	42046237	.	G	A	3035.4	PASS	AC=1;AF=0.5;AN=2;DP=217;FS=4.652;FractionInformativeReads=1;MQ=60;MQRankSum=-1.598;QD=13.99;ReadPosRankSum=1.693;SOR=0.768;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:102,115:217:99:3064,0,2619:54,48,53,62
chr1	42046812	.	C	T	800.8	PASS	AC=2;AF=0.989;AN=2;DP=2337;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1480,144,0:0,0,24,25
chr1	42047208	.	C	G	3020.2	PASS	AC=1;AF=0.5;AN=2;DP=2372;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant14-variant15-variant21-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:179,155:334:99:3793,0,4533:89,90,70,85
chr1	42048745	.	T	C	3274.7	PASS	AC=2;AF=0.989;AN=2;DP=5723;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:4010,348,0:0,0,51,65
chr1	42049032	.	G	A	2898.43	PASS	AC=2;AF=0.977;AN=2;DP=4313;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,120:121:99:4185,353,0:1,0,67,53
chr1	42049140	.	C	G	6720.74	PASS	AC=2;AF=0.977;AN=2;DP=10044;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,268:268:99:8795,804,0:0,0,153,115
chr1	42094498	.	A	G	457.09	PASS	AC=1;AF=0.611;AN=2;DP=2723;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,47:91:99:1076,0,919:22,22,25,22
chr1	42094659	.	T	C	37.65	PASS	AC=1;AF=0.614;AN=2;DP=762;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:156,0,309:4,8,2,4
chr1	42166782	.	G	A	258.35	PASS	AC=1;AF=0.543;AN=2;DP=338;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:53:369,0,53:1,2,2,9
chr1	42618874	.	G	A	111.22	PASS	AC=1;AF=0.625;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant13-variant15-variant18-variant19-variant22-variant26-variant27-variant28-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:70:70,0,79:2,0,2,0
chr1	42619152	.	C	A	5561.65	PASS	AC=1;AF=0.6;AN=2;DP=3343;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant26-variant27-variant28-variant30-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,82:163:99:2006,0,1817:37,44,41,41
chr1	42619377	.	G	A	1930.94	PASS	AC=1;AF=0.6;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant26-variant27-variant28-variant30-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,32:50:99:875,0,401:6,12,11,21
chr1	42629040	.	A	G	3155.44	PASS	AC=2;AF=1;AN=2;DP=5914;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5111,491,0:0,0,95,69
chr1	42630364	.	G	A	1695.93	PASS	AC=1;AF=0.629;AN=2;DP=2592;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,55:107:99:1233,0,1138:28,24,26,29
chr1	42644770	.	C	T	8087.2	PASS	AC=2;AF=0.886;AN=2;DP=10135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,285:286:99:8748,844,0:1,0,107,178
chr1	42647536	.	TCACA	TCACACA,T,TCA	62.76	PASS	AC=0,1,0;AF=0.25,0.25,0.023;AN=2;DP=348;set=variant2-variant4-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant25-variant26-variant27-variant35-variant36-variant37-variant39-variant42-variant44	GT:DP:GQ:SB	0/2:19:99:7,2,7,3
chr1	42654364	.	G	A	463.41	PASS	AC=1;AF=0.574;AN=2;DP=1288;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:1002,0,613:18,8,25,9
chr1	42656868	.	C	G	493.33	PASS	AC=1;AF=0.574;AN=2;DP=692;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:500,0,429:12,4,14,1
chr1	42693597	.	A	G	4990.59	PASS	AC=1;AF=0.738;AN=2;DP=6510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,74:194:99:1561,0,2851:57,63,35,39
chr1	42730525	.	T	C	4312.92	PASS	AC=2;AF=1;AN=2;DP=5950;FS=0;MQ=60;MQRankSum=1.642;ReadPosRankSum=1.102;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4968,497,0:0,0,104,62
chr1	42801014	.	T	C	106.77	PASS	AC=1;AF=0.686;AN=2;DP=320;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:150,0,166:0,5,0,4
chr1	42801370	.	G	C	808.42	PASS	AC=1;AF=0.671;AN=2;DP=1527;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:393,0,610:12,8,8,7
chr1	42801476	.	GTCTT	G	1403.31	PASS	AC=1;AF=0.671;AN=2;DP=1872;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,10:36:99:342,0,1409:9,17,4,6
chr1	42846365	.	T	C	111.22	PASS	AC=1;AF=0.714;AN=2;DP=393;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:95:95,0,240:5,6,2,2
chr1	42846786	.	G	C	1058.07	PASS	AC=1;AF=0.689;AN=2;DP=3700;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,67:136:99:1552,0,1673:30,39,24,43
chr1	42880516	.	T	C	1977.74	PASS	AC=1;AF=0.676;AN=2;DP=5757;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,82:183:99:2205,0,2670:52,49,53,29
chr1	42880841	.	T	TCA	6469.6	PASS	AC=1;AF=0.676;AN=2;DP=12924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:226,211:437:99:8085,0,8754:105,121,91,120
chr1	42880866	.	G	A	10470	PASS	AC=2;AF=1;AN=2;DP=13308;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,392:392:99:12036,1173,0:0,0,169,223
chr1	42898843	.	A	G	3396.56	PASS	AC=2;AF=0.805;AN=2;DP=4210;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3704,354,0:0,0,71,47
chr1	42901082	.	A	C	3638.62	PASS	AC=1;AF=0.563;AN=2;DP=1283;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant18-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,51:108:99:1234,0,1381:24,33,19,32
chr1	42901173	.	C	T	868.61	PASS	AC=1;AF=0.563;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant18-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:399,0,236:3,5,6,8
chr1	42915527	.	C	A	271.48	PASS	AC=1;AF=0.556;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant11-variant13-variant15-variant17-variant19-variant20-variant24-variant29-variant30-variant31-variant32-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:373,0,503:12,3,11,3
chr1	42915753	.	T	C	1368.73	PASS	AC=1;AF=0.629;AN=2;DP=5324;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,96:187:99:2525,0,2262:39,52,37,59
chr1	42921211	.	C	G	294.08	PASS	AC=1;AF=0.636;AN=2;DP=468;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:102,0,353:8,1,2,3
chr1	42925688	.	T	G	6263.37	PASS	AC=1;AF=0.629;AN=2;DP=17770;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:335,358:693:99:8416,0,7583:167,168,177,181
chr1	42939021	.	C	G	1764.61	PASS	AC=1;AF=0.563;AN=2;DP=630;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,32:52:99:939,0,507:7,13,8,24
chr1	42948562	.	GA	G	450.53	PASS	AC=1;AF=0.563;AN=2;DP=374;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:398,0,329:0,6,4,7
chr1	42948585	.	C	A	258.86	PASS	AC=1;AF=0.643;AN=2;DP=571;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:351,0,311:0,5,3,5
chr1	42956001	.	G	A	600.26	PASS	AC=1;AF=0.567;AN=2;DP=273;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant19-variant25-variant30-variant34-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:323,0,209:1,6,1,9
chr1	42956034	.	A	G	409.2	PASS	AC=1;AF=0.567;AN=2;DP=175;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:349,0,130:1,5,1,9
chr1	42962800	.	A	T	1919.71	PASS	AC=1;AF=0.563;AN=2;DP=1014;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,51:91:99:1142,0,863:15,25,23,28
chr1	42986956	.	T	C	900.1	PASS	AC=1;AF=0.563;AN=2;DP=481;MQ=60;set=variant4-filterInvariant7-variant11-variant12-variant15-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,11:34:99:263,0,551:13,10,5,6
chr1	43002347	.	A	G	2849.37	PASS	AC=1;AF=0.563;AN=2;DP=1385;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,70:115:99:1789,0,1232:11,34,22,48
chr1	43002358	.	A	G	2488.93	PASS	AC=1;AF=0.563;AN=2;DP=1129;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant19-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,57:95:99:1490,0,1026:8,30,18,39
chr1	43002744	.	G	A	797.68	PASS	AC=1;AF=0.629;AN=2;DP=2379;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,43:87:99:1019,0,1192:27,17,28,15
chr1	43011389	.	A	G	88.71	PASS	AC=1;AF=0.667;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,633:1,7,0,3
chr1	43011396	.	TCG	T	409.59	PASS	AC=1;AF=0.583;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant12-variant15-variant25-variant34-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,599:0,7,0,3
chr1	43021810	.	C	T	427.43	PASS	AC=1;AF=0.629;AN=2;DP=1443;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:892,0,449:13,8,23,9
chr1	43030135	.	C	T	31.17	PASS	AC=1;AF=0.55;AN=2;DP=120;FractionInformativeReads=1;set=variant7-variant12-variant15-variant19-variant33-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:92:92,0,323:9,3,3,1
chr1	43030158	.	G	A	58.54	PASS	AC=1;AF=0.69;AN=2;DP=267;FractionInformativeReads=1;set=variant4-variant7-variant10-variant12-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant28-variant30-variant33-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:88:88,0,360:9,3,3,1
chr1	43030190	.	A	ACCTCAGGTGATCCACCCACCTCGG	211.53	PASS	AC=1;AF=0.632;AN=2;DP=764;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,5:27:99:185,0,1226:14,8,4,1
chr1	43055243	.	C	G	186.39	PASS	AC=2;AF=0.768;AN=2;DP=777;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:873,69,0:0,0,3,20
chr1	43076555	.	CTTT	CTT,CT,C	373.15	PASS	AC=0,2,0;AF=0.423,0.288,0.019;AN=2;DP=293;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant42	GT:DP:GQ:SB	2/2:10:29:0,0,8,2
chr1	43110276	.	G	A	264.05	PASS	AC=1;AF=0.705;AN=2;DP=886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:341,0,641:16,2,10,2
chr1	43124701	.	A	G	271.42	PASS	AC=1;AF=0.711;AN=2;DP=1328;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:641,0,720:8,15,7,13
chr1	43124859	.	C	T	1263.74	PASS	AC=1;AF=0.711;AN=2;DP=3140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,60:108:99:1602,0,1150:26,22,39,21
chr1	43126733	.	G	A	2423.44	PASS	AC=1;AF=0.6;AN=2;DP=1614;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant29-variant30-variant31-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1307,0,1008:11,25,16,32
chr1	43126766	.	C	A	1168.74	PASS	AC=1;AF=0.6;AN=2;DP=1020;MQ=60;set=variant2-variant5-variant6-variant8-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant29-variant30-variant31-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:855,0,541:6,15,8,20
chr1	43132393	.	G	GA	592.5	PASS	AC=1;AF=0.629;AN=2;DP=1623;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,20:53:99:552,0,1005:11,22,4,16
chr1	43158943	.	CT	C	41.32	PASS	AC=1;AF=0.625;AN=2;DP=110;FS=0;MQ=60;set=variant5-variant11-variant15-variant17-variant19-variant20-variant23-variant24-variant31-variant32-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:31:110,0,31:2,0,5,0
chr1	43162182	.	GC	GCCC,G,GCC,GCCCC	258.4	PASS	AC=0,0,1,0;AF=0.143,0.054,0.375,0.054;AN=2;DP=542;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/3:17:99:4,2,4,7
chr1	43200526	.	T	C	995.33	PASS	AC=1;AF=0.731;AN=2;DP=2773;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,54:105:99:1412,0,1154:22,29,32,22
chr1	43201216	.	A	C	1324.27	PASS	AC=1;AF=0.718;AN=2;DP=3684;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,52:108:99:1460,0,1603:38,18,34,18
chr1	43212111	.	C	T	517.94	PASS	AC=1;AF=0.756;AN=2;DP=2577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:939,0,1159:27,17,25,13
chr1	43212431	.	A	G	2547.93	PASS	AC=2;AF=1;AN=2;DP=5967;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,142:143:99:4676,418,0:1,0,62,80
chr1	43213499	.	C	T	856.87	PASS	AC=1;AF=0.724;AN=2;DP=3156;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1241,0,1285:24,31,17,33
chr1	43228189	.	T	A	2151.23	PASS	AC=2;AF=0.989;AN=2;DP=3235;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2451,235,0:0,0,23,56
chr1	43232798	.	G	T	547.46	PASS	AC=1;AF=0.538;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant11-variant13-variant15-variant17-variant19-variant20-variant29-variant30-variant31-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:921,0,1277:10,11,13,11
chr1	43232807	.	C	G	393.51	PASS	AC=1;AF=0.73;AN=2;DP=1870;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:1044,0,1224:9,11,16,11
chr1	43239395	.	G	A	752.35	PASS	AC=1;AF=0.744;AN=2;DP=1964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,23:63:99:653,0,1169:10,30,3,20
chr1	43240998	.	C	T	550.79	PASS	AC=1;AF=0.5;AN=2;DP=298;MQ=60;set=variant7-variant14-variant15-variant36	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:981,0,1062:17,19,12,24
chr1	43241430	.	CT	C	43.88	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;MQ=60;set=variant15-variant19-variant29	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:80:81,0,80:1,2,0,3
chr1	43263435	.	G	T	956.49	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:985,0,866:22,10,29,10
chr1	43272824	.	GT	GTT,GTGTTTT,G	57.33	PASS	AC=0,1,0;AF=0.344,0.063,0.094;AN=2;DP=296;MQ=60;set=variant-variant2-variant8-variant10-variant15-variant17-variant22-variant23-variant24-variant25-variant28-filterInvariant33-variant34-variant38-variant39-variant44	GT:DP:GQ:SB	0/2:17:99:6,2,5,4
chr1	43272840	.	TAA	T	125.89	PASS	AC=1;AF=0.536;AN=2;DP=226;set=variant2-variant9-variant13-variant15-variant17-variant19-variant20-variant21-variant26-variant29-variant30-variant31-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:344,0,465:6,3,5,4
chr1	43296173	.	C	T	2276.56	PASS	AC=1;AF=0.538;AN=2;DP=1764;MQ=60;set=variant2-variant6-variant11-variant13-variant15-variant17-variant19-variant20-variant29-variant30-variant31-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:53,61:114:99:1688,0,1327:23,30,29,32
chr1	43296195	.	C	T	2060.68	PASS	AC=1;AF=0.559;AN=2;DP=2357;set=variant2-variant6-variant9-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1852,0,1641:27,33,32,33
chr1	43296354	.	G	T	1702.23	PASS	AC=1;AF=0.6;AN=2;DP=2899;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant22-variant24-variant27-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,63:136:99:1604,0,1960:33,40,28,35
chr1	43300663	.	T	C	848.65	PASS	AC=2;AF=0.711;AN=2;DP=1660;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1798,138,0:0,0,41,5
chr1	43300921	.	C	G	639.91	PASS	AC=2;AF=0.817;AN=2;DP=2865;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2834,258,0:0,0,23,63
chr1	43302515	.	A	T	172.69	PASS	AC=2;AF=0.538;AN=2;DP=103;FractionInformativeReads=1;set=variant2-variant7-variant11-variant12-variant15-variant17-variant20-variant29-variant30-variant31-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	43309383	.	G	GT	1235.45	PASS	AC=1;AF=0.737;AN=2;DP=3574;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,50:111:99:1304,0,1656:34,27,27,23
chr1	43309548	.	G	A	7414.55	PASS	AC=2;AF=0.989;AN=2;DP=9516;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:7507,748,0:0,0,118,132
chr1	43309842	.	G	C	1344.08	PASS	AC=2;AF=1;AN=2;DP=1462;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1214,105,0:0,0,17,18
chr1	43310639	.	A	G	1509.2	PASS	AC=1;AF=0.5;AN=2;DP=2658;MQ=60;set=variant2-variant6-variant7-variant11-variant12-variant15-variant17-variant19-variant20-variant25-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:94,83:177:99:1842,0,2212:39,55,34,49
chr1	43312157	.	T	C	879.73	PASS	AC=2;AF=1;AN=2;DP=1397;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1443,138,0:0,0,29,17
chr1	43312493	.	C	CG	2486.36	PASS	AC=2;AF=1;AN=2;DP=4920;FS=0;MQ=60;MQRankSum=1.338;ReadPosRankSum=1.627;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:4418,360,0:0,0,41,79
chr1	43317793	.	G	A	675.23	PASS	AC=1;AF=0.5;AN=2;DP=1215;MQ=60;set=variant2-variant7-variant11-variant12-variant15-variant17-variant19-variant20-variant25-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:47,34:81:99:821,0,1144:26,21,16,18
chr1	43395073	.	G	A	2835.67	PASS	AC=1;AF=0.5;AN=2;DP=242;FS=5.191;FractionInformativeReads=1;MQ=60;MQRankSum=-1.217;QD=11.72;ReadPosRankSum=0.834;SOR=0.688;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:129,113:242:99:2864,0,3327:59,70,60,53
chr1	43418026	.	C	T	656.13	PASS	AC=2;AF=0.852;AN=2;DP=2866;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2460,230,0:0,0,32,45
chr1	43652281	.	CAAAAAAA	CAAAAAA,CAAAAA,C,CAAAAAAAA,CAAAA	204.12	PASS	AC=1,0,0,0,0;AF=0.32,0.1,0.06,0.04,0.02;AN=2;DP=864;set=variant3-variant4-variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-filterInvariant21-variant22-variant23-variant26-variant27-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:19:22:2,2,15,0
chr1	43652369	.	T	C	2902.15	PASS	AC=2;AF=1;AN=2;DP=5358;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=0.596;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3504,321,0:0,0,67,40
chr1	43663376	.	A	G	1740.15	PASS	AC=2;AF=0.955;AN=2;DP=2934;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2732,276,0:0,0,35,57
chr1	43672636	.	T	G	631.42	PASS	AC=2;AF=0.714;AN=2;DP=1362;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,63:64:99:2154,182,0:0,1,17,46
chr1	43675467	.	G	A	2377.63	PASS	AC=2;AF=0.909;AN=2;DP=9610;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,278:278:99:8394,828,0:0,0,138,140
chr1	43676287	.	G	A	264.37	PASS	AC=2;AF=1;AN=2;DP=801;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:727,66,0:0,0,12,10
chr1	43676608	.	C	CA	63.08	PASS	AC=1;AF=0.57;AN=2;DP=954;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,18:22:40:372,0,40:1,3,7,11
chr1	43680855	.	G	A	1849.01	PASS	AC=2;AF=1;AN=2;DP=2533;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2132,177,0:0,0,45,14
chr1	43681184	.	C	T	1066.72	PASS	AC=2;AF=0.909;AN=2;DP=2827;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2530,237,0:0,0,25,54
chr1	43697968	.	G	A	447.98	PASS	AC=2;AF=0.825;AN=2;DP=1827;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2215,213,0:0,0,32,39
chr1	43699813	.	A	G	268.79	PASS	AC=2;AF=0.872;AN=2;DP=788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:696,63,0:0,0,17,4
chr1	43699935	.	C	T	2121.63	PASS	AC=2;AF=1;AN=2;DP=4775;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4226,392,0:0,0,73,59
chr1	43700140	.	A	G	6913.96	PASS	AC=2;AF=0.872;AN=2;DP=10437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,284:285:99:8653,848,0:1,0,132,152
chr1	43738340	.	A	C	4930.89	PASS	AC=1;AF=0.645;AN=2;DP=4719;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:116,77:193:99:1782,0,2728:60,56,30,47
chr1	43739195	.	G	C	1401.7	PASS	AC=1;AF=0.5;AN=2;DP=252;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant37	GT:AD:DP:GQ:PL:SB	0/1:66,60:126:99:1430,0,1599:28,38,26,34
chr1	43747683	.	C	G	186.71	PASS	AC=1;AF=0.571;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant15-variant16-variant17-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:330,0,225:3,5,3,8
chr1	43747935	.	A	AG	214.34	PASS	AC=1;AF=0.5;AN=2;DP=54;MQ=60;set=variant12-variant15-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:209,0,135:3,2,7,3
chr1	43748132	.	A	G	1336.78	PASS	AC=2;AF=1;AN=2;DP=2124;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2148,177,0:0,0,35,24
chr1	43751396	.	A	C	92.89	PASS	AC=1;AF=0.682;AN=2;DP=211;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant13-variant15-variant16-variant19-variant28-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:346,0,315:0,8,0,9
chr1	43770936	.	G	A	2943.07	PASS	AC=1;AF=0.5;AN=2;DP=261;FS=4.199;FractionInformativeReads=1;MQ=60;MQRankSum=2.337;QD=11.28;ReadPosRankSum=0.237;SOR=0.494;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:138,123:261:99:2971,0,3516:53,85,54,69
chr1	43771016	.	TA	T	1065.18	PASS	AC=1;AF=0.718;AN=2;DP=4892;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1809,0,1798:22,39,20,41
chr1	43771090	.	G	A	415.91	PASS	AC=1;AF=0.718;AN=2;DP=2077;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,26:43:99:789,0,385:5,12,4,22
chr1	43773033	.	A	G	1235.57	PASS	AC=1;AF=0.731;AN=2;DP=3759;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,77:134:99:2187,0,1706:21,36,31,46
chr1	43774437	.	G	A	673.66	PASS	AC=1;AF=0.731;AN=2;DP=1423;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:824,0,459:13,6,18,10
chr1	43774495	.	G	C	637.16	PASS	AC=1;AF=0.697;AN=2;DP=1617;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:994,0,735:20,10,22,14
chr1	43774878	.	C	T	119.23	PASS	AC=1;AF=0.596;AN=2;DP=568;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:247,0,340:5,4,5,3
chr1	43777852	.	C	T	5504.3	PASS	AC=2;AF=0.875;AN=2;DP=6018;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,166:167:99:6052,491,0:0,1,61,105
chr1	43779564	.	T	C	902.74	PASS	AC=1;AF=0.731;AN=2;DP=5616;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,96:167:99:2319,0,1655:41,30,52,44
chr1	43779869	.	T	G	1351.44	PASS	AC=1;AF=0.731;AN=2;DP=2916;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1187,0,1113:22,26,23,28
chr1	43782846	.	G	A	102.87	PASS	AC=1;AF=0.731;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:155,0,272:7,2,5,2
chr1	43784956	.	A	G	913.72	PASS	AC=1;AF=0.596;AN=2;DP=2621;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,54:119:99:1320,0,1669:34,31,28,26
chr1	43788858	.	C	T	79.19	PASS	AC=1;AF=0.609;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant32-variant33-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:43:172,0,43:0,2,3,4
chr1	43812075	.	G	A	496.96	PASS	AC=1;AF=0.589;AN=2;DP=1459;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,34:78:99:848,0,1258:31,13,22,12
chr1	43814864	.	T	C	633.54	PASS	AC=1;AF=0.596;AN=2;DP=1890;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,46:110:99:1062,0,1474:39,25,27,19
chr1	43824489	.	GC	G	37.71	PASS	AC=1;AF=0.658;AN=2;DP=140;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant8-variant10-variant15-variant18-variant20-variant21-variant25-variant29-variant31-variant32-variant33-variant35-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:122,0,125:2,2,3,1
chr1	43825644	.	T	C	1509.01	PASS	AC=1;AF=0.589;AN=2;DP=3224;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,80:134:99:2069,0,1375:33,21,43,37
chr1	43826312	.	C	A	4485.83	PASS	AC=2;AF=0.738;AN=2;DP=17435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,433:436:99:12637,1229,0:0,3,220,213
chr1	43850473	.	A	G	2907.89	PASS	AC=1;AF=0.596;AN=2;DP=4595;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,115:241:99:2828,0,3155:61,65,58,57
chr1	43855546	.	A	G	623.1	PASS	AC=1;AF=0.589;AN=2;DP=3464;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1629,0,1513:35,29,28,35
chr1	43855578	.	G	C	760.42	PASS	AC=2;AF=0.75;AN=2;DP=4693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3794,373,0:0,0,53,72
chr1	43869235	.	G	C	1270.33	PASS	AC=1;AF=0.583;AN=2;DP=3308;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,85:148:99:2193,0,1506:36,27,45,40
chr1	43872067	.	C	T	1162.82	PASS	AC=1;AF=0.574;AN=2;DP=3053;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,67:128:99:1542,0,1589:38,23,38,29
chr1	43886130	.	A	C	732.49	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=1.032;FractionInformativeReads=1;MQ=60;MQRankSum=0.521;QD=11.45;ReadPosRankSum=-1.658;SOR=0.905;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:761,0,956:12,24,8,20
chr1	43886494	.	C	T	1559	PASS	AC=1;AF=0.577;AN=2;DP=6040;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,125:279:99:3130,0,3923:93,61,76,49
chr1	43887146	.	G	A	328.21	PASS	AC=1;AF=0.577;AN=2;DP=691;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:564,0,646:3,17,2,15
chr1	43888602	.	G	A	34.48	PASS	AC=1;AF=0.569;AN=2;DP=756;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:272,0,585:4,13,4,5
chr1	43892189	.	G	A	4568.38	PASS	AC=1;AF=0.574;AN=2;DP=12376;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,247:463:99:6054,0,5063:87,129,101,146
chr1	43901011	.	A	C	560.16	PASS	AC=1;AF=0.577;AN=2;DP=1532;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:951,0,921:9,26,11,25
chr1	43903589	.	G	T	402.15	PASS	AC=1;AF=0.574;AN=2;DP=1165;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:751,0,678:6,17,5,22
chr1	43904845	.	C	A	1000.62	PASS	AC=1;AF=0.5;AN=2;DP=240;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,41:112:99:1029,0,1978:34,37,11,30
chr1	43905819	.	T	C	1046.38	PASS	AC=1;AF=0.577;AN=2;DP=1683;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:968,0,819:11,18,13,18
chr1	43906896	.	A	G	1205.52	PASS	AC=1;AF=0.574;AN=2;DP=3455;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,65:129:99:1598,0,1594:33,31,39,26
chr1	43907092	.	G	A	1602.55	PASS	AC=1;AF=0.605;AN=2;DP=2540;MQ=60;set=variant4-variant6-variant7-variant9-variant12-variant15-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:72,95:167:99:2378,0,1728:32,40,44,51
chr1	43909265	.	T	C	857.76	PASS	AC=1;AF=0.574;AN=2;DP=4460;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,101:186:99:2658,0,2069:32,53,40,61
chr1	43912590	.	A	G	342.46	PASS	AC=1;AF=0.577;AN=2;DP=1715;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:985,0,1336:30,22,22,18
chr1	43916642	.	T	C	1210.98	PASS	AC=2;AF=0.725;AN=2;DP=7452;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:7326,687,0:0,0,112,117
chr1	43917409	.	T	C	1701.96	PASS	AC=1;AF=0.556;AN=2;DP=4061;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,84:154:99:2031,0,1555:34,36,34,50
chr1	43917637	.	G	A	1531.6	PASS	AC=1;AF=0.574;AN=2;DP=5170;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,117:212:99:2961,0,2388:55,40,68,49
chr1	43919413	.	A	G	386.7	PASS	AC=2;AF=0.726;AN=2;DP=2405;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1790,168,0:0,0,17,39
chr1	43998397	.	GT	G	1531.62	PASS	AC=2;AF=1;AN=2;DP=2351;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1925,187,0:0,0,26,36
chr1	44035352	.	C	T	249.13	PASS	AC=1;AF=0.545;AN=2;DP=1183;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,36:52:99:911,0,357:10,6,19,17
chr1	44035472	.	G	A	111.51	PASS	AC=1;AF=0.56;AN=2;DP=795;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:320,0,557:8,12,7,10
chr1	44044468	.	C	T	500.38	PASS	AC=1;AF=0.545;AN=2;DP=1649;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:56,56:112:99:1487,0,1387:32,24,37,19
chr1	44056462	.	T	C	864.66	PASS	AC=1;AF=0.542;AN=2;DP=878;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:693,0,347:10,4,17,2
chr1	44057257	.	A	G	598.51	PASS	AC=1;AF=0.543;AN=2;DP=2091;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:66,65:131:99:1532,0,1760:23,43,27,38
chr1	44057668	.	G	T	789.01	PASS	AC=1;AF=0.543;AN=2;DP=2498;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:82,56:138:99:1313,0,2051:33,49,19,37
chr1	44057696	.	A	G	614.04	PASS	AC=1;AF=0.543;AN=2;DP=1745;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:62,38:100:99:1025,0,1578:22,40,10,28
chr1	44058034	.	G	A	146.22	PASS	AC=1;AF=0.543;AN=2;DP=1131;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:748,0,842:22,9,20,6
chr1	44058265	.	C	A	196.61	PASS	AC=1;AF=0.611;AN=2;DP=1582;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:473,0,834:9,19,9,11
chr1	44063250	.	T	C	156.22	PASS	AC=2;AF=0.943;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:632,48,0:0,0,12,4
chr1	44064319	.	A	G	2150.35	PASS	AC=1;AF=0.615;AN=2;DP=4361;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:103,78:181:99:1911,0,2527:59,44,47,31
chr1	44067859	.	A	G	412.57	PASS	AC=1;AF=0.615;AN=2;DP=3081;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,67:121:99:1591,0,1298:22,32,30,37
chr1	44070691	.	A	G	865.13	PASS	AC=1;AF=0.565;AN=2;DP=1555;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,52:89:99:1596,0,947:10,27,16,36
chr1	44071221	.	G	A	4526.21	PASS	AC=2;AF=0.756;AN=2;DP=6626;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:5807,567,0:0,0,74,116
chr1	44072018	.	C	T	825.39	PASS	AC=1;AF=0.54;AN=2;DP=3822;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:76,98:174:99:2287,0,1954:39,37,50,48
chr1	44072066	.	C	T	719.27	PASS	AC=1;AF=0.54;AN=2;DP=3809;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:78,97:175:99:2258,0,1941:42,36,49,48
chr1	44072420	.	A	G	1600.28	PASS	AC=2;AF=0.744;AN=2;DP=2729;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2788,258,0:0,0,53,33
chr1	44075227	.	T	C	275.08	PASS	AC=2;AF=0.977;AN=2;DP=1224;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1205,102,0:0,0,10,24
chr1	44078359	.	T	A	783.46	PASS	AC=1;AF=0.543;AN=2;DP=1125;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:904,0,744:18,10,20,13
chr1	44078384	.	T	C	3000.08	PASS	AC=2;AF=0.694;AN=2;DP=2539;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2940,234,0:0,0,47,31
chr1	44078602	.	C	A	699.42	PASS	AC=1;AF=0.568;AN=2;DP=1104;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:861,0,661:10,17,11,23
chr1	44079411	.	T	C	1844.66	PASS	AC=2;AF=0.694;AN=2;DP=3905;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3708,312,0:0,0,34,70
chr1	44083110	.	C	T	2081.98	PASS	AC=2;AF=0.732;AN=2;DP=4174;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3458,321,0:0,0,73,34
chr1	44083507	.	T	C	1283.04	PASS	AC=2;AF=0.732;AN=2;DP=4243;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3149,315,0:0,0,42,63
chr1	44083519	.	G	A	1109.6	PASS	AC=2;AF=0.732;AN=2;DP=3848;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2670,270,0:0,0,33,58
chr1	44084739	.	C	T	3105.79	PASS	AC=2;AF=0.732;AN=2;DP=6934;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6725,652,0:0,0,113,105
chr1	44086080	.	T	C	1701.12	PASS	AC=2;AF=0.732;AN=2;DP=4162;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3569,338,0:0,0,65,48
chr1	44086831	.	C	T	4647.15	PASS	AC=2;AF=0.689;AN=2;DP=8362;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,296:296:99:8946,885,0:0,0,127,169
chr1	44087496	.	C	T	3521.7	PASS	AC=2;AF=0.756;AN=2;DP=6138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6498,611,0:0,0,134,70
chr1	44119038	.	A	AT	468.21	PASS	AC=1;AF=0.545;AN=2;DP=1071;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant10-variant12-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:718,0,629:8,18,9,20
chr1	44121557	.	C	G	404.76	PASS	AC=1;AF=0.571;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:327,0,220:1,6,2,9
chr1	44125962	.	CA	C	1026.11	PASS	AC=1;AF=0.589;AN=2;DP=1797;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:899,0,667:17,9,22,11
chr1	44137257	.	C	A	2100.26	PASS	AC=2;AF=0.713;AN=2;DP=4403;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3888,372,0:0,0,62,62
chr1	44154479	.	G	C	665.89	PASS	AC=1;AF=0.525;AN=2;DP=1394;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,43:100:99:1115,0,1575:33,24,21,22
chr1	44160466	.	T	C	1534.11	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=6.615;FractionInformativeReads=1;MQ=60;MQRankSum=-0.125;QD=15.5;ReadPosRankSum=1.701;SOR=1.014;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:40,59:99:99:1562,0,1044:22,18,24,35
chr1	44171211	.	C	T	256.08	PASS	AC=1;AF=0.525;AN=2;DP=333;MQ=60;set=variant5-variant6-variant7-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant29-variant32-variant33-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:333,0,171:2,5,7,7
chr1	44173423	.	G	A	144.76	PASS	AC=1;AF=0.525;AN=2;DP=594;MQ=60;set=variant5-variant6-variant7-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant35-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:381,0,327:8,8,7,11
chr1	44280381	.	A	T	1368.68	PASS	AC=2;AF=0.898;AN=2;DP=1415;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1022,93,0:0,0,21,10
chr1	44280425	.	T	G	2330.8	PASS	AC=1;AF=0.625;AN=2;DP=1463;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant12-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:959,0,984:26,11,23,11
chr1	44290530	.	A	G	1099.17	PASS	AC=1;AF=0.589;AN=2;DP=3303;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,66:162:99:1350,0,2327:44,52,33,33
chr1	44303786	.	CA	CAAAAAAAAAA,CAAAAAAAAAAAA,CAAAAAAAAA,CAAAAAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAAA,C,CAAAAA,CAAAAAAA	1323.96	PASS	AC=0,0,0,0,0,2,0,0,0;AF=0.226,0.016,0.194,0.065,0.194,0.161,0.016,0.032,0.016;AN=2;DP=535;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	6/6:18:99:0,0,17,1
chr1	44323736	.	T	C	1480.17	PASS	AC=2;AF=0.92;AN=2;DP=2748;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2102,204,0:0,0,40,28
chr1	44365529	.	G	A	906.96	PASS	AC=2;AF=0.845;AN=2;DP=1767;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1993,185,0:0,0,23,39
chr1	44386305	.	C	T	377.45	PASS	AC=2;AF=0.881;AN=2;DP=885;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,33:34:91:1129,91,0:1,0,13,20
chr1	44386615	.	A	G	1628.99	PASS	AC=2;AF=0.881;AN=2;DP=3669;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2700,267,0:0,0,37,52
chr1	44395786	.	C	T	3372.24	PASS	AC=2;AF=0.768;AN=2;DP=5202;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4633,444,0:0,0,65,84
chr1	44396646	.	C	G	1969.18	PASS	AC=2;AF=0.768;AN=2;DP=3066;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2953,291,0:0,0,54,43
chr1	44399176	.	A	T	1801.2	PASS	AC=2;AF=0.989;AN=2;DP=4072;MQ=60;MQRankSum=-0.852;ReadPosRankSum=1.245;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:3978,398,0:0,0,65,68
chr1	44399942	.	G	A	381.35	PASS	AC=2;AF=0.763;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:775,78,0:0,0,12,14
chr1	44401384	.	A	G	3186.67	PASS	AC=2;AF=0.881;AN=2;DP=5552;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5048,490,0:0,0,77,87
chr1	44402565	.	G	A	1031.66	PASS	AC=1;AF=0.75;AN=2;DP=1967;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:856,0,1083:16,20,17,14
chr1	44415415	.	C	T	4281.95	PASS	AC=2;AF=0.768;AN=2;DP=9541;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,265:265:99:8559,792,0:0,0,127,138
chr1	44426025	.	G	A	3003.28	PASS	AC=2;AF=0.78;AN=2;DP=5207;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4040,402,0:0,0,64,71
chr1	44426948	.	G	A	1849.08	PASS	AC=2;AF=0.929;AN=2;DP=4944;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4807,471,0:0,0,58,100
chr1	44431715	.	T	C	1171.93	PASS	AC=2;AF=0.768;AN=2;DP=2208;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2356,224,0:0,0,33,42
chr1	44432500	.	C	G	1124.74	PASS	AC=2;AF=0.768;AN=2;DP=2837;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2724,237,0:0,0,39,40
chr1	44438974	.	C	T	12015.3	PASS	AC=2;AF=0.756;AN=2;DP=13298;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,417:421:99:12201,1155,0:2,2,201,216
chr1	44442521	.	A	C	3212.21	PASS	AC=2;AF=0.798;AN=2;DP=3709;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3590,312,0:0,0,42,62
chr1	44443534	.	G	A	2391.66	PASS	AC=1;AF=0.5;AN=2;DP=205;FS=0;FractionInformativeReads=0.995;MQ=60;MQRankSum=-1.26;QD=11.67;ReadPosRankSum=1.424;SOR=0.699;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:110,94:204:99:2420,0,3065:54,56,46,48
chr1	44443854	.	G	A	1344.41	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=1.345;FractionInformativeReads=0.993;MQ=60;MQRankSum=-1.11;QD=9.67;ReadPosRankSum=0.818;SOR=0.774;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:79,59:138:99:1373,0,2017:40,39,28,31
chr1	44446634	.	A	G	578.52	PASS	AC=2;AF=0.919;AN=2;DP=874;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:842,72,0:0,0,18,6
chr1	44451098	.	G	T	114.88	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;QD=16.41;ReadPosRankSum=-0.55;SOR=0.223;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:143,0,102:0,3,1,3
chr1	44457215	.	G	A	3216.74	PASS	AC=2;AF=0.764;AN=2;DP=2960;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,77:78:99:2484,222,0:0,1,51,26
chr1	44457305	.	G	A	5186.13	PASS	AC=2;AF=0.764;AN=2;DP=6203;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:5635,588,0:0,0,105,92
chr1	44457739	.	T	TC	1271.11	PASS	AC=2;AF=1;AN=2;DP=1891;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1751,141,0:0,0,16,31
chr1	44459318	.	CAA	CA,C	161.86	PASS	AC=1,0;AF=0.476,0.024;AN=2;DP=1769;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:46:99:14,6,22,4
chr1	44483040	.	AACACACACAC	AACACACAC,AACAC,AAC,AACACAC,A	260.83	PASS	AC=1,0,0,1,0;AF=0.43,0.163,0.105,0.186,0.012;AN=2;DP=1523;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/1:22:99:0,3,3,16
chr1	44594966	.	G	A	1364.51	PASS	AC=1;AF=0.605;AN=2;DP=2147;MQ=60;set=variant-variant6-variant9-variant11-variant14-variant15-variant17-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,73:129:99:1911,0,1513:39,17,52,21
chr1	44595047	.	T	A	3116.89	PASS	AC=1;AF=0.636;AN=2;DP=5747;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant30-variant31-variant32-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,153:305:99:3597,0,3644:83,69,86,67
chr1	44595113	.	G	C	7072.74	PASS	AC=2;AF=0.743;AN=2;DP=9789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,304:304:99:9415,911,0:0,0,140,164
chr1	44595410	.	A	G	3164.86	PASS	AC=1;AF=0.614;AN=2;DP=3195;MQ=60;set=variant-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant17-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:89,78:167:99:2876,0,4979:41,48,39,39
chr1	44595426	.	G	A	3082.66	PASS	AC=1;AF=0.614;AN=2;DP=3213;MQ=60;set=variant-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant17-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:89,79:168:99:2959,0,4976:47,42,40,39
chr1	44595995	.	G	GC	1183.83	PASS	AC=1;AF=0.614;AN=2;DP=813;MQ=60;set=variant-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant17-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:660,0,541:7,15,8,18
chr1	44679556	.	A	G	3320.31	PASS	AC=1;AF=0.776;AN=2;DP=4542;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,58:126:99:1480,0,1615:30,38,25,33
chr1	44681113	.	T	C	283.68	PASS	AC=1;AF=0.58;AN=2;DP=557;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:368,0,366:2,9,6,8
chr1	44684995	.	T	C	718.71	PASS	AC=1;AF=0.58;AN=2;DP=1450;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:987,0,616:16,11,20,16
chr1	44750795	.	C	A	258.1	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant12-variant15-variant19-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:166,0,454:2,11,1,5
chr1	44788398	.	A	T	1784.41	PASS	AC=2;AF=0.966;AN=2;DP=3252;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,67:68:99:1919,193,0:1,0,36,31
chr1	44818337	.	G	T	221.11	PASS	AC=1;AF=0.708;AN=2;DP=336;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:198,0,100:3,1,5,0
chr1	44878509	.	C	G	405.9	PASS	AC=1;AF=0.672;AN=2;DP=545;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:164,0,342:2,9,0,5
chr1	45140619	.	CTGGA	C,CTGGATGGA	300.01	PASS	AC=1,0;AF=0.607,0.036;AN=2;DP=753;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:25:99:4,7,1,13
chr1	45166513	.	T	A	255.48	PASS	AC=1;AF=0.55;AN=2;DP=486;MQ=60;set=variant2-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant24-variant27-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:429,0,212:6,2,11,3
chr1	45170012	.	A	G	1455.54	PASS	AC=1;AF=0.603;AN=2;DP=1636;MQ=60;set=variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1086,0,755:10,21,16,25
chr1	45212979	.	CA	C	30.61	PASS	AC=1;AF=0.5;AN=2;DP=52;MQ=60;set=filterInvariant8-variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:101,0,244:9,3,6,0
chr1	45249708	.	C	A	1240.92	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0.766;FractionInformativeReads=0.989;MQ=60;MQRankSum=-1.325;QD=13.06;ReadPosRankSum=0.235;SOR=0.602;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:45,49:94:99:1269,0,1083:20,25,23,26
chr1	45251959	.	G	A	1306.07	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=1.93;FractionInformativeReads=1;MQ=60;MQRankSum=-0.49;QD=14.84;ReadPosRankSum=1.023;SOR=0.46;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:37,51:88:99:1334,0,1064:10,27,17,34
chr1	45285587	.	A	G	1284.56	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.129;QD=15.86;ReadPosRankSum=1.994;SOR=0.744;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:33,48:81:99:1313,0,738:12,21,17,31
chr1	45285615	.	G	A	1088.33	PASS	AC=1;AF=0.5;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:23,40:63:99:1117,0,579:7,16,13,27
chr1	45295911	.	G	GTA	205.64	PASS	AC=2;AF=0.76;AN=2;DP=143;FS=0;MQ=60;set=variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,3,3
chr1	45362992	.	T	C	420.8	PASS	AC=1;AF=0.643;AN=2;DP=2435;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,58:103:99:1414,0,1031:25,20,35,23
chr1	45468606	.	A	G	1501.08	PASS	AC=2;AF=0.833;AN=2;DP=2145;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,80:81:99:2545,232,0:1,0,37,43
chr1	45468631	.	A	T	1496.1	PASS	AC=2;AF=1;AN=2;DP=2081;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2328,219,0:0,0,30,43
chr1	45470130	.	T	C	365.24	PASS	AC=2;AF=0.942;AN=2;DP=1331;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1516,132,0:0,0,12,32
chr1	45472798	.	TTGTGTGTGTGTGTG	TTGTGTGTG,TTGTGTGTGTG,TTGTGTG,TTGTG,T,TTG	1780.35	PASS	AC=1,0,0,0,0,1;AF=0.352,0.216,0.398,0.011,0.011,0.011;AN=2;DP=2719;set=Intersection	GT:DP:GQ:SB	6/1:47:99:0,0,27,20
chr1	45474157	.	G	A	3229	PASS	AC=2;AF=0.788;AN=2;DP=4609;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,118:120:99:3760,324,0:1,1,68,50
chr1	45475566	.	A	G	1116.24	PASS	AC=2;AF=1;AN=2;DP=2102;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1251,111,0:0,0,26,11
chr1	45476069	.	C	A	645.43	PASS	AC=2;AF=1;AN=2;DP=1665;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2026,179,0:0,0,39,21
chr1	45476399	.	G	A	909.65	PASS	AC=1;AF=0.5;AN=2;DP=395;MQ=60;set=variant14-variant15-variant16-variant28	GT:AD:DP:GQ:PL:SB	0/1:64,77:141:99:1860,0,1761:29,35,38,39
chr1	45479874	.	G	T	1387	PASS	AC=2;AF=1;AN=2;DP=2468;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2140,203,0:0,0,24,44
chr1	45480733	.	C	T	1328.68	PASS	AC=2;AF=1;AN=2;DP=1917;FS=0;MQ=60;MQRankSum=1.209;ReadPosRankSum=0.49;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1408,140,0:0,0,21,26
chr1	45500294	.	A	G	851.22	PASS	AC=2;AF=0.795;AN=2;DP=976;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:614,57,0:0,0,6,13
chr1	45504720	.	G	C	677.06	PASS	AC=1;AF=0.703;AN=2;DP=2593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,35:81:99:810,0,1161:26,20,21,14
chr1	45504858	.	G	T	296.14	PASS	AC=1;AF=0.556;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant11-variant15-variant18-variant25-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:707,0,404:5,12,12,16
chr1	45524213	.	C	T	998.6	PASS	AC=1;AF=0.869;AN=2;DP=4821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,66:149:99:1537,0,2218:44,39,42,24
chr1	45671599	.	G	A	889.44	PASS	AC=1;AF=0.556;AN=2;DP=461;MQ=60;set=variant-variant4-variant11-variant15-variant18-variant25-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:711,0,974:16,15,14,12
chr1	45671966	.	A	G	2034.29	PASS	AC=1;AF=0.565;AN=2;DP=4185;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant15-variant18-variant19-variant21-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:110,112:222:99:2752,0,2913:40,70,52,60
chr1	45794426	.	T	TG	56.79	PASS	AC=1;AF=0.813;AN=2;DP=239;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:97:178,0,97:1,2,1,4
chr1	45795900	.	CAAAA	CAA,CA,C,CAAA	84.98	PASS	AC=1,0,0,0;AF=0.348,0.261,0.043,0.043;AN=2;DP=264;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant20-variant22-variant23-variant27-variant32-variant35-variant36-variant37-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:18:84:9,4,5,0
chr1	45796269	.	G	C	2426.22	PASS	AC=1;AF=0.909;AN=2;DP=4104;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,78:146:99:1879,0,1849:27,41,36,42
chr1	45798555	.	T	C	2265.91	PASS	AC=1;AF=0.909;AN=2;DP=6469;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:98,87:185:99:2137,0,2588:48,50,42,45
chr1	45804422	.	T	TTG	321.45	PASS	AC=1;AF=0.721;AN=2;DP=537;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:186,0,1133:1,15,0,6
chr1	45804428	.	TTTG	T	289.62	PASS	AC=1;AF=0.727;AN=2;DP=428;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:129,0,1061:1,11,0,4
chr1	45805566	.	G	C	3549.32	PASS	AC=2;AF=1;AN=2;DP=7256;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6055,603,0:0,0,105,96
chr1	45809941	.	C	T	235.3	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:264,0,702:16,9,7,5
chr1	45864655	.	GAAAA	G,GAAAAA,GAA,GAAAAAA,GA	65.9	PASS	AC=0,0,0,2,0;AF=0.038,0.115,0.423,0.077,0.077;AN=2;DP=225;set=variant2-filterInvariant5-variant8-variant11-variant15-variant17-variant19-variant20-filterInvariant26-variant33-variant34-variant37-variant40	GT:DP:GQ:SB	4/4:6:13:0,0,1,5
chr1	45923668	.	T	C	124.68	PASS	AC=1;AF=0.556;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant12-variant15-variant16-variant24-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:72:75,0,72:0,3,0,2
chr1	45956700	.	C	A	1928.41	PASS	AC=1;AF=0.756;AN=2;DP=7260;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,90:192:99:2002,0,2682:52,50,44,46
chr1	45960135	.	CAA	C,CA,CAAA	141.92	PASS	AC=0,1,0;AF=0.071,0.5,0.018;AN=2;DP=451;set=variant-variant2-variant3-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant42	GT:DP:GQ:SB	0/2:17:99:8,2,4,3
chr1	45961327	.	CTTTTTTTTTTTTTT	CTT,C,CT	200.49	PASS	AC=0,0,1;AF=0.204,0.056,0.537;AN=2;DP=267;FS=0;set=variant2-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant29-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:10:99:0,3,2,5
chr1	45961955	.	A	G	1044.75	PASS	AC=1;AF=0.756;AN=2;DP=4260;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,62:133:99:1462,0,1792:39,32,34,28
chr1	45965307	.	G	A	2090.19	PASS	AC=1;AF=0.667;AN=2;DP=6125;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,77:168:99:2150,0,2551:31,60,29,48
chr1	45965340	.	T	C	1055.79	PASS	AC=1;AF=0.756;AN=2;DP=5229;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,67:132:99:1836,0,1794:18,47,25,42
chr1	45965703	.	G	T	466.43	PASS	AC=1;AF=0.756;AN=2;DP=3039;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,58:99:99:1541,0,950:22,19,31,27
chr1	45973435	.	A	AT	197.25	PASS	AC=1;AF=0.768;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:273,0,380:4,8,3,6
chr1	45973928	.	G	A	1429.46	PASS	AC=1;AF=0.667;AN=2;DP=5446;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,87:172:99:1995,0,2155:34,51,40,47
chr1	45975088	.	GT	GTTTTTT,GTTTTTTT,GTTTTT,G,GTTTTTTTT,GTTTTTTTTTTTTTTTTT	859.22	PASS	AC=0,1,0,0,0,0;AF=0.2,0.475,0.038,0.038,0.038,0.013;AN=2;DP=4011;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:82:99:17,28,13,24
chr1	45975739	.	ACT	A	208.69	PASS	AC=1;AF=0.833;AN=2;DP=227;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:93:201,0,93:3,0,5,0
chr1	45975856	.	C	G	190.38	PASS	AC=1;AF=0.667;AN=2;DP=1120;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:456,0,536:14,7,11,9
chr1	45976147	.	G	A	76.26	PASS	AC=1;AF=0.75;AN=2;DP=742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:232,0,313:4,7,4,5
chr1	45976263	.	C	CT	334.67	PASS	AC=1;AF=0.744;AN=2;DP=1630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:648,0,654:12,7,10,8
chr1	45976472	.	G	C	431.96	PASS	AC=1;AF=0.667;AN=2;DP=1677;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:564,0,588:11,9,10,9
chr1	45976587	.	A	G	1266.88	PASS	AC=1;AF=0.756;AN=2;DP=3002;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,32:79:99:897,0,1232:27,20,17,15
chr1	45981270	.	CAAAA	CAA,CA,C	57.11	PASS	AC=1,0,0;AF=0.357,0.286,0.071;AN=2;DP=37;FS=0;set=variant7-variant15-variant17-variant26-variant29-variant31-variant33	GT:DP:GQ:SB	0/1:6:2:1,0,5,0
chr1	45981512	.	T	C	1022.57	PASS	AC=1;AF=0.756;AN=2;DP=4559;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,60:124:99:1380,0,1672:28,36,26,34
chr1	45984353	.	G	A	149.16	PASS	AC=1;AF=0.756;AN=2;DP=481;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:269,0,166:5,0,6,2
chr1	46016687	.	T	C	1732.98	PASS	AC=1;AF=0.671;AN=2;DP=4591;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,84:169:99:2197,0,2376:28,57,34,50
chr1	46050004	.	TTCGG	T	2295.87	PASS	AC=1;AF=0.795;AN=2;DP=4956;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,72:139:99:2753,0,3756:20,47,19,53
chr1	46057144	.	A	G	128.26	PASS	AC=2;AF=0.923;AN=2;DP=140;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,1,3
chr1	46065998	.	T	C	3160.01	PASS	AC=2;AF=0.966;AN=2;DP=4088;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4388,453,0:0,0,86,65
chr1	46078630	.	A	G	84.37	PASS	AC=1;AF=0.803;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:396,0,213:6,4,9,5
chr1	46078854	.	A	G	759.56	PASS	AC=1;AF=0.795;AN=2;DP=2945;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,51:120:99:1248,0,1644:36,33,27,24
chr1	46078884	.	C	T	613.07	PASS	AC=1;AF=0.795;AN=2;DP=2840;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,56:123:99:1403,0,1701:35,32,29,27
chr1	46080220	.	GT	G	478.74	PASS	AC=1;AF=0.795;AN=2;DP=1597;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:589,0,316:4,10,8,15
chr1	46080947	.	A	C	1022.9	PASS	AC=1;AF=0.795;AN=2;DP=4512;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,87:144:99:2214,0,1380:30,27,40,47
chr1	46081940	.	T	A	3073.33	PASS	AC=2;AF=0.966;AN=2;DP=3685;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3011,316,0:0,0,58,48
chr1	46081960	.	C	T	552.55	PASS	AC=1;AF=0.795;AN=2;DP=3408;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1220,0,1319:29,27,27,27
chr1	46082431	.	C	A	1489.5	PASS	AC=1;AF=0.795;AN=2;DP=5530;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,84:197:99:2067,0,2743:52,61,39,45
chr1	46083706	.	C	G	2196.86	PASS	AC=1;AF=0.5;AN=2;DP=2117;MQ=60;set=variant3-variant5-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,53:137:99:1165,0,2144:42,42,27,26
chr1	46084383	.	G	T	1414.91	PASS	AC=1;AF=0.5;AN=2;DP=1134;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,31:73:99:815,0,1250:26,16,22,9
chr1	46084614	.	C	CTTT,CTTTT	2374.94	PASS	AC=0,1;AF=0.577,0.218;AN=2;DP=5531;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:163:99:35,46,31,51
chr1	46085852	.	C	T	606.34	PASS	AC=1;AF=0.795;AN=2;DP=2488;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,38:79:99:1115,0,929:22,19,25,13
chr1	46085879	.	C	G	652.05	PASS	AC=1;AF=0.795;AN=2;DP=3031;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1126,0,1089:25,21,25,21
chr1	46086077	.	C	T	803.36	PASS	AC=1;AF=0.795;AN=2;DP=3949;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1256,0,1493:29,26,21,29
chr1	46086329	.	C	T	1287.62	PASS	AC=1;AF=0.5;AN=2;DP=1791;MQ=60;set=variant3-variant5-variant9-variant12-variant13-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,60:121:99:1645,0,1715:36,25,33,27
chr1	46086913	.	C	T	501.96	PASS	AC=1;AF=0.795;AN=2;DP=1973;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:798,0,977:15,14,15,10
chr1	46087577	.	G	A	3681.26	PASS	AC=1;AF=0.795;AN=2;DP=10006;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,126:282:99:3413,0,4297:57,99,45,81
chr1	46087879	.	A	G	431.1	PASS	AC=1;AF=0.795;AN=2;DP=2996;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:851,0,1148:23,18,19,14
chr1	46089225	.	C	G	1696.73	PASS	AC=1;AF=0.795;AN=2;DP=7074;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,76:175:99:1930,0,2652:54,45,42,34
chr1	46089801	.	G	A	222.13	PASS	AC=1;AF=0.811;AN=2;DP=638;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:214,0,410:3,10,1,6
chr1	46092962	.	GA	G	4881.84	PASS	AC=1;AF=0.619;AN=2;DP=3601;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:105,88:193:99:1779,0,2233:66,39,49,39
chr1	46093052	.	AAC	A	14140.5	PASS	AC=1;AF=0.619;AN=2;DP=5636;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:185,150:335:99:5653,0,7252:107,78,82,68
chr1	46093396	.	GA	G	415.6	PASS	AC=1;AF=0.5;AN=2;DP=528;set=variant3-variant5-variant9-variant12-variant13-variant15-variant16-variant18-variant20-filterInvariant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:400,0,401:6,6,11,6
chr1	46093409	.	A	AAAAC	1161.87	PASS	AC=1;AF=0.619;AN=2;DP=595;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:444,0,778:12,8,6,6
chr1	46093692	.	G	A	8171.41	PASS	AC=1;AF=0.619;AN=2;DP=5012;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:121,155:276:99:4063,0,2983:70,51,93,62
chr1	46094027	.	A	G	3927.26	PASS	AC=1;AF=0.619;AN=2;DP=2100;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1278,0,1709:20,42,19,31
chr1	46094236	.	A	G	318.53	PASS	AC=2;AF=0.673;AN=2;DP=165;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,1,3
chr1	46095126	.	T	TCCCCCCCC,TCCCCCCC,TTC,TCCCCCC,TCCCCC,TCCC,TCCCCCCCCC	79.26	PASS	AC=0,0,1,1,0,0,0;AF=0.038,0.038,0.115,0.115,0.154,0.077,0.038;AN=2;DP=86;set=variant3-variant7-variant8-variant10-variant12-variant15-variant16-variant20-variant23-variant28-variant30-variant35-variant38	GT:DP:GQ:SB	3/4:8:87:0,1,4,3
chr1	46095140	.	A	C	56.77	PASS	AC=1;AF=0.5;AN=2;DP=161;set=variant-variant3-variant7-variant10-variant11-variant15-variant16-variant19-variant20-variant23-variant24-variant28-variant30-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:96:96,0,407:5,5,3,0
chr1	46095143	.	C	A	433.13	PASS	AC=1;AF=0.6;AN=2;DP=127;MQ=60;set=variant-variant2-variant8-variant11-variant12-variant15-variant17-variant24-variant25-variant27-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:239,0,177:3,1,4,4
chr1	46095272	.	T	C	4537.92	PASS	AC=1;AF=0.619;AN=2;DP=2671;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:63,72:135:99:1723,0,1572:38,25,43,29
chr1	46095976	.	G	A	1065.89	PASS	AC=1;AF=0.643;AN=2;DP=653;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:595,0,632:17,3,17,6
chr1	46095989	.	T	C	457.08	PASS	AC=1;AF=0.5;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:788,0,757:20,7,20,6
chr1	46096402	.	AT	A	1669.88	PASS	AC=1;AF=0.619;AN=2;DP=1348;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:664,0,934:14,23,11,17
chr1	46096442	.	CA	C	1303.92	PASS	AC=2;AF=0.989;AN=2;DP=1774;FS=0;MQ=60;MQRankSum=1.195;ReadPosRankSum=-0.46;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1594,138,0:0,0,15,31
chr1	46124663	.	A	G	3015.21	PASS	AC=2;AF=0.629;AN=2;DP=3298;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3698,366,0:0,0,74,48
chr1	46125790	.	C	A	217.71	PASS	AC=1;AF=0.706;AN=2;DP=114;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant27-variant33-variant34-variant40	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,122:3,0,2,0
chr1	46125880	.	T	C	462.47	PASS	AC=1;AF=0.625;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant40	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:167,0,349:9,4,5,2
chr1	46153203	.	G	A	1869.55	PASS	AC=2;AF=0.629;AN=2;DP=1689;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1547,153,0:0,0,24,27
chr1	46153548	.	C	T	1476.43	PASS	AC=1;AF=0.619;AN=2;DP=1055;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:934,0,738:17,14,18,17
chr1	46156492	.	A	G	1331.05	PASS	AC=1;AF=0.619;AN=2;DP=844;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:895,0,1011:26,2,23,3
chr1	46159805	.	GT	G	2627.35	PASS	AC=1;AF=0.619;AN=2;DP=1548;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:28,45:73:99:1844,0,2116:15,13,31,14
chr1	46159814	.	ATAT	A	3049.82	PASS	AC=1;AF=0.619;AN=2;DP=1766;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:36,54:90:99:2071,0,2418:22,14,38,16
chr1	46160260	.	C	T	2320.97	PASS	AC=1;AF=0.619;AN=2;DP=1409;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:33,44:77:99:1161,0,926:7,26,17,27
chr1	46164846	.	A	T	11276.3	PASS	AC=1;AF=0.619;AN=2;DP=7224;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:217,187:404:99:4381,0,5576:127,90,111,76
chr1	46165875	.	G	GA	582.02	PASS	AC=1;AF=0.676;AN=2;DP=315;MQ=60;set=variant-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant27-variant30-variant32-variant34-variant40	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:271,0,218:0,10,2,10
chr1	46166861	.	G	C	2407.68	PASS	AC=1;AF=0.619;AN=2;DP=1452;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:56,53:109:99:1171,0,1294:28,28,27,26
chr1	46166956	.	C	CT	1441.92	PASS	AC=1;AF=0.619;AN=2;DP=935;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:606,0,781:11,24,12,17
chr1	46195211	.	TAAC	T	1626.67	PASS	AC=1;AF=0.619;AN=2;DP=645;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:633,0,669:12,4,13,5
chr1	46195375	.	T	C	2796.42	PASS	AC=1;AF=0.619;AN=2;DP=1887;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:70,55:125:99:1226,0,1620:30,40,23,32
chr1	46206540	.	A	G	652.58	PASS	AC=1;AF=0.619;AN=2;DP=315;FractionInformativeReads=1;set=variant-variant2-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:306,0,305:8,2,8,2
chr1	46269352	.	T	G	1410.59	PASS	AC=2;AF=1;AN=2;DP=2440;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1635,177,0:0,0,29,30
chr1	46290311	.	GTA	G	2563.69	PASS	AC=1;AF=0.625;AN=2;DP=1510;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,40:65:99:1575,0,906:6,19,16,24
chr1	46347863	.	C	CA	55.44	PASS	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=60;QD=18.48;SOR=2.833;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:7:93,7,0:0,0,3,0
chr1	46347879	.	T	A	151.77	PASS	AC=2;AF=0.926;AN=2;DP=167;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:25:243,25,0:0,0,7,2
chr1	46347910	.	G	A	639.53	PASS	AC=1;AF=0.81;AN=2;DP=680;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:363,0,432:11,6,10,2
chr1	46348229	.	C	G	736.34	PASS	AC=1;AF=0.625;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:139,0,317:4,6,1,4
chr1	46379518	.	A	G	3379.99	PASS	AC=1;AF=0.795;AN=2;DP=5965;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,83:153:99:2001,0,1758:35,35,44,39
chr1	46424964	.	G	A	2447.99	PASS	AC=2;AF=1;AN=2;DP=3191;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2683,263,0:0,0,51,37
chr1	46473802	.	A	G	241.77	PASS	AC=1;AF=0.684;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant32-variant33-variant34-variant39	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:97:97,0,327:8,1,2,2
chr1	46473902	.	A	T	1239.15	PASS	AC=1;AF=0.63;AN=2;DP=883;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:22,34:56:99:795,0,548:13,9,22,12
chr1	46476587	.	T	G	2687.02	PASS	AC=1;AF=0.795;AN=2;DP=5290;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,100:171:99:2432,0,1635:31,40,45,55
chr1	46485562	.	C	T	106.21	PASS	AC=1;AF=0.788;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:259,0,338:2,8,1,7
chr1	46487560	.	A	G	2695.1	PASS	AC=1;AF=0.763;AN=2;DP=4822;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,66:138:99:1644,0,1916:41,31,34,32
chr1	46491635	.	C	T	716.6	PASS	AC=1;AF=0.763;AN=2;DP=1712;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:644,0,618:4,17,5,18
chr1	46494678	.	G	A	1621.68	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=6.407;FractionInformativeReads=1;MQ=60;MQRankSum=-0.934;QD=11.75;ReadPosRankSum=1.365;SOR=0.348;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:65,73:138:99:1650,0,1620:24,41,35,38
chr1	46495024	.	G	A	1151.61	PASS	AC=2;AF=0.526;AN=2;DP=1529;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3125,304,0:0,0,67,35
chr1	46496709	.	A	G	666.3	PASS	AC=1;AF=0.776;AN=2;DP=2416;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:795,0,768:12,16,14,14
chr1	46498375	.	A	G	807.79	PASS	AC=1;AF=0.789;AN=2;DP=3831;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,52:101:99:1344,0,1069:22,27,20,32
chr1	46499207	.	A	T	151.89	PASS	AC=1;AF=0.583;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant10-variant12-variant14-variant15-variant21-variant24-variant25-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:184,0,233:5,4,5,3
chr1	46500613	.	T	C	2081.54	PASS	AC=1;AF=0.5;AN=2;DP=2300;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,72:153:99:1899,0,2093:40,41,34,38
chr1	46505785	.	A	AC	496.61	PASS	AC=2;AF=0.9;AN=2;DP=124;FS=0;MQ=60;set=variant3-variant4-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant31-variant32-variant35-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:189,18,0:0,0,2,4
chr1	46508769	.	A	G	1100.34	PASS	AC=1;AF=0.776;AN=2;DP=3889;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,82:154:99:2331,0,2041:25,47,25,57
chr1	46508785	.	G	GT	865.95	PASS	AC=1;AF=0.5;AN=2;DP=1524;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:1334,0,1265:20,34,20,38
chr1	46511487	.	G	C	197.35	PASS	AC=1;AF=0.8;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:129,0,320:8,1,4,1
chr1	46521517	.	G	A	928.46	PASS	AC=1;AF=0.776;AN=2;DP=3439;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,52:132:99:1090,0,2010:32,48,22,30
chr1	46521559	.	A	T	880.67	PASS	AC=1;AF=0.789;AN=2;DP=2766;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,40:105:99:946,0,1677:25,40,16,24
chr1	46527465	.	A	G	466.36	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:495,0,335:8,3,13,1
chr1	46598273	.	A	C	6571.55	PASS	AC=1;AF=0.776;AN=2;DP=11664;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,175:370:99:4139,0,4601:104,91,92,83
chr1	46641827	.	A	G	843.01	PASS	AC=2;AF=0.538;AN=2;DP=929;set=variant11-variant15-variant16-variant17-variant18-variant19-variant22-variant27-variant28-variant34-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3108,246,0:0,0,69,13
chr1	46650191	.	C	CG	287.87	PASS	AC=1;AF=0.542;AN=2;DP=489;MQ=60;set=variant3-variant14-variant15-variant18-variant19-variant22-variant24-variant27-variant28-variant33-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:526,0,545:19,6,12,10
chr1	46655158	.	T	C	1956.67	PASS	AC=2;AF=1;AN=2;DP=3580;FS=0;MQ=60;MQRankSum=1.504;ReadPosRankSum=0.524;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1873,197,0:0,0,32,34
chr1	46655769	.	CTTT	CT,CTT,C,CTTTT	80.91	PASS	AC=0,1,0,0;AF=0.179,0.286,0.036,0.036;AN=2;DP=277;set=variant3-filterInvariant4-variant11-variant12-variant15-variant19-filterInvariant20-variant21-variant22-filterInvariant33-filterInvariant38-variant39-variant40-variant44	GT:DP:GQ:SB	0/2:11:40:0,5,0,6
chr1	46658217	.	C	T	1401.99	PASS	AC=1;AF=0.5;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:63,60:123:99:1430,0,1671:33,30,29,31
chr1	46658328	.	A	G	1173.55	PASS	AC=1;AF=0.556;AN=2;DP=2342;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,53:104:99:1959,0,2587:23,28,23,30
chr1	46658343	.	G	A	967.2	PASS	AC=1;AF=0.556;AN=2;DP=2141;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,45:97:99:1741,0,2689:28,24,18,27
chr1	46659104	.	T	C	445.22	PASS	AC=1;AF=0.556;AN=2;DP=1346;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:582,0,1036:14,23,7,16
chr1	46659363	.	T	C	1559.37	PASS	AC=1;AF=0.556;AN=2;DP=3265;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,66:149:99:1574,0,2041:43,40,40,26
chr1	46660295	.	T	C	1288.9	PASS	AC=1;AF=0.556;AN=2;DP=3409;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,60:146:99:1453,0,1970:36,50,27,33
chr1	46685915	.	T	C	2006.16	PASS	AC=1;AF=0.5;AN=2;DP=173;FS=0;FractionInformativeReads=0.994;MQ=60;MQRankSum=-0.747;QD=11.6;ReadPosRankSum=1.792;SOR=0.697;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:90,82:172:99:2034,0,2238:44,46,40,42
chr1	46747301	.	T	C	595.43	PASS	AC=1;AF=0.577;AN=2;DP=543;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:281,0,506:8,11,4,8
chr1	46768864	.	G	C	1819.31	PASS	AC=1;AF=0.5;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:67,75:142:99:1848,0,1693:31,36,36,39
chr1	46806242	.	G	T	1323.47	PASS	AC=1;AF=0.565;AN=2;DP=2280;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,57:92:99:1731,0,797:13,22,23,34
chr1	46806274	.	CAG	C	1776.48	PASS	AC=1;AF=0.565;AN=2;DP=2013;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1822,0,1340:13,23,20,26
chr1	46806393	.	T	C	664.8	PASS	AC=1;AF=0.565;AN=2;DP=2104;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,41:101:99:1126,0,1487:35,25,23,18
chr1	46806429	.	A	T	666.37	PASS	AC=1;AF=0.565;AN=2;DP=2108;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,49:110:99:1273,0,1512:34,27,26,23
chr1	46806480	.	C	T	631.01	PASS	AC=1;AF=0.565;AN=2;DP=1996;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,54:102:99:1344,0,1275:23,25,24,30
chr1	46806550	.	C	T	922.84	PASS	AC=1;AF=0.565;AN=2;DP=2097;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,65:107:99:1653,0,994:19,23,29,36
chr1	46806703	.	A	G	320.4	PASS	AC=1;AF=0.565;AN=2;DP=1597;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1251,0,1159:21,25,20,26
chr1	46810405	.	TG	T	963.96	PASS	AC=1;AF=0.568;AN=2;DP=1575;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,34:90:99:829,0,1537:35,21,22,12
chr1	46810670	.	T	C	1487.94	PASS	AC=1;AF=0.568;AN=2;DP=3298;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,98:189:99:2416,0,2184:40,51,38,60
chr1	46810842	.	C	T	159.12	PASS	AC=1;AF=0.568;AN=2;DP=558;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:320,0,375:2,9,3,9
chr1	46812339	.	C	T	250.65	PASS	AC=1;AF=0.575;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:161,0,489:7,4,4,0
chr1	46812360	.	C	T	562.79	PASS	AC=1;AF=0.571;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:99:120,0,660:11,5,4,0
chr1	46812374	.	T	C	644.8	PASS	AC=1;AF=0.571;AN=2;DP=546;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:195,0,716:13,5,6,0
chr1	46812444	.	A	G	1283.88	PASS	AC=1;AF=0.568;AN=2;DP=1652;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,52:99:99:1353,0,1347:32,15,33,19
chr1	46812519	.	A	G	1595.9	PASS	AC=1;AF=0.568;AN=2;DP=2810;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,92:156:99:2253,0,1528:36,28,49,43
chr1	46818442	.	G	A	317.85	PASS	AC=1;AF=0.568;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:561,0,532:7,2,10,4
chr1	46818452	.	A	G	311.84	PASS	AC=1;AF=0.568;AN=2;DP=393;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:558,0,534:8,2,10,4
chr1	46818479	.	C	T	281.07	PASS	AC=1;AF=0.568;AN=2;DP=563;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:461,0,381:10,4,12,4
chr1	46818508	.	T	C	491.67	PASS	AC=1;AF=0.568;AN=2;DP=859;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:427,0,749:19,8,13,6
chr1	46818836	.	T	C	345.58	PASS	AC=1;AF=0.568;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:658,0,807:6,21,4,18
chr1	46818898	.	T	C	153.14	PASS	AC=1;AF=0.568;AN=2;DP=361;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:443,0,212:2,6,3,12
chr1	46818921	.	A	C	486	PASS	AC=1;AF=0.625;AN=2;DP=189;MQ=60;set=variant5-variant6-variant7-variant9-variant13-variant15-variant16-variant21-variant24-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:96:322,0,96:1,3,3,8
chr1	46826587	.	C	A	644.74	PASS	AC=1;AF=0.568;AN=2;DP=1076;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:544,0,614:9,14,5,13
chr1	46827214	.	A	C	1126.24	PASS	AC=2;AF=1;AN=2;DP=1449;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:866,72,0:0,0,18,6
chr1	46827485	.	C	T	1789.16	PASS	AC=1;AF=0.568;AN=2;DP=2692;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,71:170:99:1703,0,2436:46,53,33,38
chr1	46827728	.	A	C	597.01	PASS	AC=1;AF=0.568;AN=2;DP=1114;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:899,0,657:11,17,14,23
chr1	46827769	.	C	T	501.22	PASS	AC=1;AF=0.568;AN=2;DP=942;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-filterInvariant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:537,0,636:8,16,11,14
chr1	46827871	.	G	A	129.03	PASS	AC=1;AF=0.568;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:102,0,146:1,4,1,3
chr1	46860237	.	G	A	1813.54	PASS	AC=1;AF=0.568;AN=2;DP=2611;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,59:132:99:1446,0,1970:40,33,22,37
chr1	46870761	.	C	A	4379.46	PASS	AC=1;AF=0.531;AN=2;DP=2282;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant24-variant28-variant31-variant33-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:64,83:147:99:2203,0,1572:27,37,34,49
chr1	46871986	.	T	C	2373.43	PASS	AC=2;AF=0.875;AN=2;DP=10955;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,292:293:99:8895,842,0:1,0,163,129
chr1	46874279	.	G	A	291.7	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:320,0,516:6,12,4,9
chr1	46877180	.	G	A	520.48	PASS	AC=1;AF=0.565;AN=2;DP=2005;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,55:117:99:1247,0,1527:33,29,29,26
chr1	46879562	.	T	G	959.27	PASS	AC=1;AF=0.779;AN=2;DP=2379;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:702,0,682:8,18,11,16
chr1	46972605	.	T	A	965.72	PASS	AC=1;AF=0.567;AN=2;DP=1941;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant27-variant32-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:89,80:169:99:1980,0,2501:64,25,60,20
chr1	46976530	.	C	G	694.09	PASS	AC=1;AF=0.567;AN=2;DP=1002;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant19-variant27-variant32-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:789,0,944:21,20,18,16
chr1	46976717	.	C	T	847.89	PASS	AC=1;AF=0.567;AN=2;DP=2361;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant19-variant27-variant32-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:107,86:193:99:1955,0,2598:62,45,45,41
chr1	46976837	.	C	T	1778.25	PASS	AC=1;AF=0.586;AN=2;DP=5885;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:96,130:226:99:3079,0,2429:41,55,59,71
chr1	46979222	.	C	T	1016.71	PASS	AC=2;AF=0.757;AN=2;DP=1726;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2227,207,0:0,0,39,30
chr1	47013180	.	A	G	4737.81	PASS	AC=2;AF=0.814;AN=2;DP=8793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:7277,734,0:0,0,125,120
chr1	47013364	.	T	C	2855.38	PASS	AC=2;AF=0.989;AN=2;DP=4195;MQ=60;MQRankSum=-0.926;ReadPosRankSum=2.695;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3292,300,0:0,0,39,61
chr1	47013431	.	G	A	608.55	PASS	AC=1;AF=0.5;AN=2;DP=103;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:637,0,542:7,15,11,15
chr1	47014821	.	A	AAAAAG,AAAAAAG	3093.52	PASS	AC=2,0;AF=0.821,0.012;AN=2;DP=4131;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:123:99:0,0,72,51
chr1	47023055	.	TA	T,TAA	136.33	PASS	AC=1,0;AF=0.45,0.05;AN=2;DP=1428;MQ=60;set=filterInvariant6-filterInvariant12-filterInvariant15-filterInvariant16-variant18-filterInvariant22-filterInvariant24-variant33-filterInvariant35-filterInvariant43	GT:DP:GQ:SB	0/1:146:71:67,57,11,11
chr1	47023531	.	C	A	3041.27	PASS	AC=1;AF=0.625;AN=2;DP=3701;MQ=60;set=variant3-variant4-variant5-variant6-variant10-variant13-variant14-variant15-variant21-variant24-variant26-variant28-variant31-variant32-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,103:191:99:2571,0,2141:49,39,58,45
chr1	47046465	.	AC	A	337	PASS	AC=1;AF=0.614;AN=2;DP=388;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant24-variant25-variant26-variant28-variant31-variant32-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:133,0,301:2,8,1,5
chr1	47059934	.	T	C	3858.4	PASS	AC=2;AF=1;AN=2;DP=4778;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3634,374,0:0,0,57,68
chr1	47060078	.	G	A	313.28	PASS	AC=1;AF=0.614;AN=2;DP=356;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:340,0,227:2,5,1,9
chr1	47069730	.	A	G	1018.05	PASS	AC=1;AF=0.662;AN=2;DP=1544;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:819,0,648:18,10,20,12
chr1	47074621	.	G	C	1470.79	PASS	AC=2;AF=1;AN=2;DP=2021;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2141,210,0:0,0,38,32
chr1	47074774	.	TCATGGTCTGATGGTCC	T,ACATGGTCTGATGGTCC	1618.02	PASS	AC=1,1;AF=0.656,0.344;AN=2;DP=1662;FS=0;MQ=60;set=variant3-variant4-variant6-variant7-variant-variant10-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant40-variant42-variant43	GT:DP:GQ:SB	1/2:65:99:0,0,32,33
chr1	47075932	.	C	T	910.89	PASS	AC=1;AF=0.625;AN=2;DP=1406;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,51:82:99:1373,0,779:8,23,17,34
chr1	47078637	.	T	C	9133.26	PASS	AC=1;AF=0.676;AN=2;DP=11730;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:214,213:427:99:5061,0,5478:120,94,108,105
chr1	47080665	.	C	T	1945.08	PASS	AC=1;AF=0.609;AN=2;DP=2544;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,69:146:99:1650,0,1997:36,41,30,39
chr1	47080983	.	G	A	1610.42	PASS	AC=2;AF=0.677;AN=2;DP=2893;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2837,288,0:0,0,39,58
chr1	47098823	.	C	T	2384.81	PASS	AC=1;AF=0.5;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:94,85:179:99:2413,0,2900:49,45,38,47
chr1	47099090	.	G	GA	3348.56	PASS	AC=2;AF=0.667;AN=2;DP=10531;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,300:302:99:8658,860,0:1,1,157,143
chr1	47099235	.	A	C	5454.23	PASS	AC=2;AF=0.609;AN=2;DP=13193;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,471:471:99:14064,1411,0:0,0,217,254
chr1	47099346	.	C	A	5441.01	PASS	AC=2;AF=0.989;AN=2;DP=6364;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:5265,440,0:0,0,46,101
chr1	47099721	.	T	C	189.81	PASS	AC=2;AF=0.667;AN=2;DP=856;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:898,72,0:0,0,14,10
chr1	47100049	.	C	T	287.99	PASS	AC=2;AF=0.989;AN=2;DP=590;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:480,47,0:0,0,5,11
chr1	47101015	.	C	A	1026.69	PASS	AC=2;AF=0.989;AN=2;DP=1657;FS=0;MQ=60;MQRankSum=1.588;ReadPosRankSum=-1.241;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1405,135,0:0,0,24,21
chr1	47101117	.	G	C	650.85	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:679,0,702:12,13,10,13
chr1	47108828	.	T	C	1396.8	PASS	AC=2;AF=0.989;AN=2;DP=1541;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1692,119,0:1,0,35,19
chr1	47109089	.	A	G	1076.33	PASS	AC=2;AF=0.667;AN=2;DP=2522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2696,252,0:0,0,27,57
chr1	47110668	.	G	C	321.04	PASS	AC=2;AF=0.671;AN=2;DP=1074;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1056,93,0:0,0,20,11
chr1	47110712	.	C	T	472.38	PASS	AC=2;AF=0.667;AN=2;DP=1710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1312,123,0:0,0,25,16
chr1	47110766	.	G	GC	1757.53	PASS	AC=2;AF=0.989;AN=2;DP=2726;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2463,199,0:0,0,39,27
chr1	47133811	.	T	C	1228.86	PASS	AC=2;AF=0.852;AN=2;DP=2236;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1289,140,0:0,0,24,23
chr1	47138444	.	C	T	1021.64	PASS	AC=2;AF=1;AN=2;DP=1265;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1190,100,0:0,0,31,3
chr1	47140775	.	AT	A	463.97	PASS	AC=2;AF=0.609;AN=2;DP=794;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:802,84,0:0,0,27,1
chr1	47141718	.	T	C	5377.31	PASS	AC=2;AF=0.852;AN=2;DP=6318;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5322,503,0:0,0,88,80
chr1	47181920	.	CAAAAA	CAAAA,CAA,CAAA,CAAAAAAAA,C	188.17	PASS	AC=1,0,0,0,0;AF=0.232,0.125,0.179,0.018,0.018;AN=2;DP=589;set=variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:18:56:7,0,11,0
chr1	47276728	.	G	C	702.49	PASS	AC=1;AF=0.614;AN=2;DP=1263;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,31:73:99:773,0,1202:18,24,11,20
chr1	47278997	.	T	C	172.82	PASS	AC=1;AF=0.5;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:257,0,515:13,0,7,4
chr1	47279175	.	C	T	1429.67	PASS	AC=1;AF=0.5;AN=2;DP=1370;MQ=60;set=variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:94,75:169:99:1633,0,2456:45,49,41,34
chr1	47279558	.	CCCT	C	2340.44	PASS	AC=1;AF=0.5;AN=2;DP=1214;MQ=60;set=variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:76,73:149:99:2811,0,3281:43,33,41,32
chr1	47280085	.	C	CCT	1968.81	PASS	AC=1;AF=0.571;AN=2;DP=928;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant27-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,16:47:99:566,0,1258:15,16,7,9
chr1	47283505	.	G	T	999.6	PASS	AC=1;AF=0.5;AN=2;DP=677;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:45,33:78:99:792,0,1193:24,21,19,14
chr1	47284526	.	C	A	780.5	PASS	AC=1;AF=0.5;AN=2;DP=779;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:46,77:123:99:1978,0,1302:32,14,48,29
chr1	47284572	.	G	A	1455.27	PASS	AC=1;AF=0.5;AN=2;DP=1252;MQ=60;set=variant10-variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:78,89:167:99:2075,0,2084:49,29,52,37
chr1	47395973	.	G	A	2211.59	PASS	AC=1;AF=0.798;AN=2;DP=3073;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:914,0,1001:11,28,10,25
chr1	47398496	.	A	G	2557.24	PASS	AC=1;AF=0.5;AN=2;DP=2605;set=variant10-variant11-variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant34-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,95:204:99:2423,0,2685:56,53,55,40
chr1	47398743	.	G	C	4057.04	PASS	AC=1;AF=0.798;AN=2;DP=5698;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,78:168:99:1805,0,2135:40,50,40,38
chr1	47398913	.	C	T	354.06	PASS	AC=1;AF=0.5;AN=2;DP=273;FractionInformativeReads=1;set=variant10-variant11-variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:299,0,213:0,7,3,8
chr1	47399497	.	T	C	237.68	PASS	AC=1;AF=0.5;AN=2;DP=191;FractionInformativeReads=1;set=variant10-variant11-variant12-variant15-variant18-variant21-variant25-variant27-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:317,0,384:10,1,9,1
chr1	47399967	.	G	A	1017.47	PASS	AC=1;AF=0.553;AN=2;DP=1448;set=variant-variant3-variant9-variant10-variant11-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant27-variant33-variant34-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:994,0,1317:21,34,19,25
chr1	47400059	.	A	G	1652.67	PASS	AC=2;AF=1;AN=2;DP=3182;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2850,261,0:0,0,56,31
chr1	47401424	.	A	T	2219.21	PASS	AC=1;AF=0.798;AN=2;DP=4350;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,72:162:99:1399,0,2215:35,55,32,40
chr1	47401466	.	T	C	1742.99	PASS	AC=1;AF=0.798;AN=2;DP=2931;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,54:102:99:1397,0,1516:8,40,14,40
chr1	47402487	.	TTGTGTG	TTGTG,TTG,T	3457.34	PASS	AC=0,2,0;AF=0.128,0.663,0.116;AN=2;DP=6990;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:112:99:5,3,51,53
chr1	47489786	.	T	C	351.43	PASS	AC=1;AF=0.635;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant33-variant34-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:377,0,420:3,10,3,9
chr1	47495822	.	C	T	1045.88	PASS	AC=1;AF=0.658;AN=2;DP=1420;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,48:86:99:1247,0,873:17,21,21,27
chr1	47496983	.	C	A	724.52	PASS	AC=1;AF=0.63;AN=2;DP=841;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:717,0,445:12,7,19,4
chr1	47515563	.	G	GA	289.72	PASS	AC=1;AF=0.696;AN=2;DP=294;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:180,0,469:14,3,6,2
chr1	47515596	.	A	C	978.24	PASS	AC=1;AF=0.688;AN=2;DP=576;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,11:40:99:294,0,755:20,9,9,2
chr1	47534107	.	A	T	973.31	PASS	AC=1;AF=0.688;AN=2;DP=616;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:489,0,660:16,3,13,3
chr1	47550246	.	G	GA	365.96	PASS	AC=1;AF=0.696;AN=2;DP=625;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,9:44:99:170,0,1074:25,10,7,2
chr1	47571902	.	C	T	2909.5	PASS	AC=1;AF=0.667;AN=2;DP=1871;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,45:108:99:1707,0,2486:31,32,24,21
chr1	47571905	.	C	T	2909.5	PASS	AC=1;AF=0.667;AN=2;DP=1882;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,46:110:99:1707,0,2486:31,33,24,22
chr1	47571943	.	CTTT	C,CTT,CTTTT,CTTTTT	1895.97	PASS	AC=1,0,0,0;AF=0.369,0.155,0.06,0.012;AN=2;DP=2950;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:80:99:18,26,17,19
chr1	47571996	.	T	C	934.99	PASS	AC=1;AF=0.667;AN=2;DP=905;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:509,0,681:4,16,8,12
chr1	47572046	.	C	T	346.49	PASS	AC=1;AF=0.667;AN=2;DP=352;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:322,0,177:1,5,0,9
chr1	47581122	.	A	T	366.79	PASS	AC=1;AF=0.682;AN=2;DP=289;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:71:234,0,71:3,1,7,1
chr1	47582195	.	G	A	738.59	PASS	AC=1;AF=0.674;AN=2;DP=420;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:204,0,342:8,3,6,1
chr1	47582242	.	ATTTCGT	A	631.51	PASS	AC=1;AF=0.632;AN=2;DP=743;set=variant-variant2-variant3-variant5-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:571,0,981:14,11,13,3
chr1	47582292	.	T	G	1976.68	PASS	AC=1;AF=0.667;AN=2;DP=1401;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:553,0,1122:15,15,16,9
chr1	47582314	.	C	T	821.28	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=0.974;FractionInformativeReads=1;MQ=59.02;MQRankSum=-0.299;QD=13.46;ReadPosRankSum=-1.218;SOR=0.869;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:850,0,880:13,13,19,16
chr1	47583415	.	G	T	878.09	PASS	AC=1;AF=0.667;AN=2;DP=1353;set=variant-variant2-variant3-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:976,0,1023:27,14,27,7
chr1	47603033	.	GT	G	487.33	PASS	AC=1;AF=0.688;AN=2;DP=650;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:341,0,789:17,7,9,3
chr1	47607281	.	C	T	2053.34	PASS	AC=1;AF=0.559;AN=2;DP=3411;set=variant-variant2-variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:123,100:223:99:2394,0,3092:46,77,39,61
chr1	47607641	.	C	T	1812.43	PASS	AC=1;AF=0.559;AN=2;DP=2289;FractionInformativeReads=1;set=variant-variant2-variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:68,74:142:99:1897,0,2041:51,17,51,23
chr1	47607762	.	T	C	3588.95	PASS	AC=1;AF=0.559;AN=2;DP=6306;set=variant-variant2-variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:247,192:439:99:6950,0,10069:123,124,90,102
chr1	47607785	.	G	A	3594.23	PASS	AC=1;AF=0.559;AN=2;DP=6062;set=variant-variant2-variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:244,186:430:99:6725,0,10047:116,128,81,105
chr1	47607851	.	A	T	4923.21	PASS	AC=1;AF=0.656;AN=2;DP=7259;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,127:271:99:3261,0,3474:54,90,49,78
chr1	47608983	.	G	T	1079.69	PASS	AC=1;AF=0.559;AN=2;DP=2151;set=variant-variant2-variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:73,66:139:99:1686,0,1807:30,43,25,41
chr1	47609407	.	C	T	2440.66	PASS	AC=1;AF=0.577;AN=2;DP=2760;set=variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant25-variant27-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:116,126:242:99:2997,0,2825:68,48,78,48
chr1	47609489	.	T	C	8122.04	PASS	AC=1;AF=0.688;AN=2;DP=6695;set=variant-variant2-variant3-variant5-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:133,154:287:99:3816,0,3163:63,70,71,83
chr1	47609668	.	T	C	1626.08	PASS	AC=1;AF=0.688;AN=2;DP=1993;set=variant-variant2-variant3-variant5-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,45:106:99:1144,0,1451:23,38,14,31
chr1	47610293	.	C	T	2090.44	PASS	AC=1;AF=0.5;AN=2;DP=4700;set=variant-variant2-variant3-variant5-filterInvariant9-filterInvariant10-filterInvariant15-filterInvariant17-variant18-variant20-variant21-filterInvariant25-variant28-variant33-variant34-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:263,49:312:99:272,0,7344:103,160,21,28
chr1	47610436	.	G	C	1643.42	PASS	AC=1;AF=0.583;AN=2;DP=1485;FractionInformativeReads=1;set=variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant25-variant27-variant33-variant37	GT:AD:DP:GQ:PL:SB	0/1:62,75:137:99:2013,0,1685:28,34,33,42
chr1	47610574	.	C	T	2471.91	PASS	AC=1;AF=0.5;AN=2;DP=328;FractionInformativeReads=1;set=variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:101,110:211:99:2500,0,2314:48,53,57,53
chr1	47611598	.	T	C	1165.37	PASS	AC=1;AF=0.556;AN=2;DP=2603;set=variant-variant2-variant3-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant30-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:97,82:179:99:2283,0,2607:46,51,37,45
chr1	47614621	.	A	G	495.07	PASS	AC=1;AF=0.688;AN=2;DP=662;set=variant-variant2-variant3-variant5-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:319,0,674:8,17,4,9
chr1	47652870	.	CCTTG	C	1054.24	PASS	AC=1;AF=0.733;AN=2;DP=2110;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:1254,0,4029:25,2,25,6
chr1	47652875	.	AGC	A	1091.89	PASS	AC=1;AF=0.733;AN=2;DP=2183;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:1244,0,4106:25,4,25,7
chr1	47652879	.	T	A	1101.09	PASS	AC=1;AF=0.733;AN=2;DP=2281;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,32:64:99:1248,0,4050:26,6,25,7
chr1	47655816	.	A	G	901.09	PASS	AC=1;AF=0.826;AN=2;DP=1751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:789,0,506:3,15,5,17
chr1	47656575	.	G	A	514.46	PASS	AC=1;AF=0.695;AN=2;DP=2439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:707,0,647:14,14,15,15
chr1	47682017	.	T	G	245.55	PASS	AC=2;AF=0.724;AN=2;DP=960;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1161,108,0:0,0,24,12
chr1	47684677	.	T	G	570.42	PASS	AC=1;AF=0.711;AN=2;DP=2705;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1060,0,1048:13,26,18,25
chr1	47685455	.	T	C	3917.62	PASS	AC=2;AF=1;AN=2;DP=6400;FS=0;MQ=60;MQRankSum=1.31;ReadPosRankSum=1.711;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:5794,622,0:0,0,89,119
chr1	47689842	.	C	G	110.91	PASS	AC=1;AF=0.716;AN=2;DP=889;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,22:29:99:636,0,107:4,3,6,16
chr1	47691568	.	GCAGA	G	1709.59	PASS	AC=1;AF=0.667;AN=2;DP=5134;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,67:179:99:1304,0,5375:54,58,30,37
chr1	47716040	.	TAA	T	2129.64	PASS	AC=2;AF=0.667;AN=2;DP=4500;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:6164,416,0:0,0,94,44
chr1	47717189	.	A	G	2056.13	PASS	AC=2;AF=0.667;AN=2;DP=4726;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4237,420,0:0,0,64,76
chr1	47735280	.	T	C	482.78	PASS	AC=2;AF=0.667;AN=2;DP=1179;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1780,156,0:0,0,38,14
chr1	47753405	.	G	A	606.04	PASS	AC=2;AF=0.625;AN=2;DP=1467;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1354,131,0:0,0,17,27
chr1	47770786	.	T	A	851.96	PASS	AC=2;AF=0.625;AN=2;DP=2132;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2316,219,0:0,0,22,51
chr1	47824248	.	C	T	4295.11	PASS	AC=2;AF=1;AN=2;DP=5431;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5398,482,0:0,0,95,66
chr1	47824400	.	C	T	9343.73	PASS	AC=2;AF=1;AN=2;DP=10479;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,294:294:99:9043,880,0:0,0,140,154
chr1	47841038	.	G	GA	461.07	PASS	AC=2;AF=0.625;AN=2;DP=1452;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1219,120,0:0,0,15,25
chr1	47841109	.	T	C	241.77	PASS	AC=2;AF=0.989;AN=2;DP=465;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:268,24,0:0,0,2,6
chr1	47842431	.	G	A	7070.87	PASS	AC=2;AF=1;AN=2;DP=10429;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,293:293:99:9086,877,0:0,0,181,112
chr1	47842666	.	A	T	10404	PASS	AC=2;AF=1;AN=2;DP=13088;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,365:365:99:9471,1093,0:0,0,158,207
chr1	47842777	.	C	T	3144.95	PASS	AC=2;AF=0.622;AN=2;DP=5854;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,199:200:99:6637,554,0:0,1,87,112
chr1	47844464	.	G	A	2356.35	PASS	AC=2;AF=0.622;AN=2;DP=5968;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6621,599,0:0,0,71,129
chr1	47883019	.	T	C	215.84	PASS	AC=2;AF=0.909;AN=2;DP=2112;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2616,178,0:0,0,31,28
chr1	47883024	.	A	G	899.13	PASS	AC=2;AF=1;AN=2;DP=2158;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2614,178,0:0,0,30,29
chr1	47902286	.	G	A	1715.81	PASS	AC=2;AF=0.657;AN=2;DP=5907;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5317,554,0:0,0,90,96
chr1	47903063	.	G	C	2634.41	PASS	AC=2;AF=0.643;AN=2;DP=7941;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,284:284:99:8601,851,0:0,0,133,151
chr1	47904668	.	T	TCCGCAC	2466.02	PASS	AC=2;AF=1;AN=2;DP=2901;FS=0;MQ=60;MQRankSum=0.137;ReadPosRankSum=1.745;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3083,210,0:0,0,32,37
chr1	47904909	.	G	C	3349.55	PASS	AC=2;AF=1;AN=2;DP=3030;FS=0;MQ=60;MQRankSum=0.628;ReadPosRankSum=-0.075;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2312,186,0:0,0,35,27
chr1	47905555	.	AG	A	296.26	PASS	AC=2;AF=0.743;AN=2;DP=1498;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1866,178,0:0,0,19,40
chr1	47906114	.	A	G	428.94	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.25;QD=12.26;ReadPosRankSum=3.083;SOR=0.582;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:457,0,374:7,8,10,10
chr1	47906338	.	G	A	484.8	PASS	AC=2;AF=1;AN=2;DP=1193;FS=0;MQ=60;MQRankSum=0.528;ReadPosRankSum=1.281;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:658,71,0:0,0,10,14
chr1	47906425	.	G	A	61.77	PASS	AC=2;AF=0.989;AN=2;DP=355;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.751;ReadPosRankSum=0.751;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:303,24,0:0,0,1,7
chr1	48260105	.	G	A	433.04	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.927;QD=18.04;ReadPosRankSum=-0.058;SOR=0.874;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:461,0,330:10,1,12,1
chr1	48459907	.	C	T	2955.26	PASS	AC=1;AF=0.529;AN=2;DP=6098;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant27-variant32-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:213,214:427:99:5001,0,5315:112,101,111,103
chr1	48697733	.	T	G	1912.91	PASS	AC=2;AF=1;AN=2;DP=5274;FS=0;MQ=60;MQRankSum=0.822;ReadPosRankSum=0.164;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4794,468,0:0,0,63,93
chr1	48697751	.	C	T	3553.04	PASS	AC=1;AF=0.536;AN=2;DP=1395;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant13-variant15-variant20-variant23-variant25-variant28-variant29-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:59,71:130:99:1694,0,1395:23,36,28,43
chr1	48705391	.	G	A	463.53	PASS	AC=2;AF=0.596;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:590,45,0:0,0,2,13
chr1	48707838	.	A	G	2326.55	PASS	AC=2;AF=0.955;AN=2;DP=2413;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1966,170,0:0,0,16,41
chr1	48713394	.	C	T	1634.16	PASS	AC=2;AF=0.845;AN=2;DP=2723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2665,246,0:0,0,37,45
chr1	48762797	.	GGTGTGTGT	GGTGTGT,GGTGT,GGTGTGTGTGT,GGT,GGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGT,G,GGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGT	343.1	PASS	AC=1,0,0,0,0,0,0,0,0,0;AF=0.398,0.102,0.023,0.08,0.068,0.023,0.023,0.011,0.011,0.011;AN=2;DP=5936;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:131:99:27,21,46,37
chr1	48764419	.	C	T	13369.9	PASS	AC=2;AF=0.589;AN=2;DP=9510;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,399:399:99:12189,1193,0:0,0,175,224
chr1	48869288	.	T	A	499.88	PASS	AC=2;AF=0.589;AN=2;DP=474;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:669,60,0:0,0,15,5
chr1	48902977	.	G	C	835.33	PASS	AC=2;AF=0.977;AN=2;DP=697;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:688,48,0:0,0,5,11
chr1	48937691	.	A	T	5527.15	PASS	AC=2;AF=0.589;AN=2;DP=4404;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4426,461,0:0,0,68,89
chr1	48998442	.	C	A	167.98	PASS	AC=1;AF=0.667;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant13-variant14-variant15-variant21-variant23-variant25-variant27-variant28-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:23:152,0,23:1,1,4,3
chr1	48998708	.	T	C,A	182.97	PASS	AC=2,0;AF=0.744,0.218;AN=2;DP=240;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:10:30:0,0,5,5
chr1	48998748	.	T	G	469.22	PASS	AC=1;AF=0.63;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant27-variant29-variant31-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:150,0,216:4,3,4,2
chr1	48999555	.	T	C	2775.64	PASS	AC=1;AF=0.587;AN=2;DP=5420;MQ=60;set=variant2-variant5-variant7-variant9-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant27-variant29-variant30-variant31-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,124:282:99:3052,0,4043:60,98,47,77
chr1	49049525	.	G	GT,GTT,GTTT	86.96	PASS	AC=1,0,0;AF=0.544,0.059,0.044;AN=2;DP=410;set=variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:8:25:2,0,5,1
chr1	49051568	.	T	C	1775.06	PASS	AC=1;AF=0.731;AN=2;DP=2375;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:1053,0,1256:15,28,17,25
chr1	49052263	.	C	A	228.38	PASS	AC=1;AF=0.558;AN=2;DP=961;MQ=60;set=variant-variant3-variant4-variant5-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:490,0,539:9,10,8,6
chr1	49052933	.	T	C	810.3	PASS	AC=1;AF=0.597;AN=2;DP=3039;MQ=60;set=variant-variant3-variant4-variant5-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:1048,0,1561:20,36,16,25
chr1	49056695	.	T	C	577.27	PASS	AC=1;AF=0.597;AN=2;DP=1972;MQ=60;set=variant-variant3-variant4-variant5-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,37:77:99:1004,0,1034:15,25,13,24
chr1	49056762	.	A	AC,ACC	52.42	PASS	AC=1,0;AF=0.6,0.1;AN=2;DP=38;FS=0;MQ=60;set=variant11-variant15-variant17-variant6-variant35	GT:DP:GQ:SB	0/1:6:49:0,2,0,4
chr1	49100332	.	C	T	1887.17	PASS	AC=2;AF=0.697;AN=2;DP=2225;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2322,218,0:0,0,23,50
chr1	49113319	.	T	C	2886.11	PASS	AC=2;AF=0.737;AN=2;DP=3563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3266,324,0:0,0,49,59
chr1	49128720	.	C	T	1058.45	PASS	AC=2;AF=0.721;AN=2;DP=1473;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1304,108,0:0,0,30,6
chr1	49193394	.	G	T	2981.62	PASS	AC=2;AF=0.893;AN=2;DP=4911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3716,359,0:0,0,67,53
chr1	49224584	.	G	T	1218.4	PASS	AC=2;AF=0.898;AN=2;DP=3088;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2478,240,0:0,0,43,37
chr1	49283412	.	C	T	1120.6	PASS	AC=2;AF=0.989;AN=2;DP=1807;MQ=60;MQRankSum=-1.397;ReadPosRankSum=1.678;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1523,140,0:0,0,25,22
chr1	49332724	.	A	C	1594.45	PASS	AC=2;AF=0.756;AN=2;DP=3165;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3197,311,0:0,0,63,41
chr1	49332969	.	A	G	990	PASS	AC=2;AF=0.756;AN=2;DP=1504;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1981,165,0:0,0,10,45
chr1	49511424	.	A	G	1748.76	PASS	AC=1;AF=0.538;AN=2;DP=2103;MQ=60;set=variant4-variant7-variant9-variant15-variant20-variant21-variant22-variant26-variant27-variant29-variant34-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,85:177:99:2214,0,2419:35,57,33,52
chr1	49711281	.	C	T	180.42	PASS	AC=1;AF=0.823;AN=2;DP=230;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,14:17:44:376,0,44:2,1,9,5
chr1	50163361	.	A	G	196.77	PASS	AC=1;AF=0.879;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:236,0,110:0,3,0,6
chr1	50331725	.	T	C	414.3	PASS	AC=2;AF=0.953;AN=2;DP=942;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:674,72,0:0,0,10,14
chr1	50572096	.	C	A	1399.05	PASS	AC=1;AF=0.542;AN=2;DP=1398;MQ=60;set=variant4-variant9-variant15-variant20-variant21-variant22-variant26-variant27-variant29-variant30-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,73:147:99:1674,0,1659:34,40,36,37
chr1	50610600	.	CT	C	363.44	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=3.352;FractionInformativeReads=1;MQ=60;MQRankSum=0.913;QD=12.11;ReadPosRankSum=0.124;SOR=1.423;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:401,0,398:7,8,10,5
chr1	50661411	.	C	T	2159.04	PASS	AC=2;AF=0.943;AN=2;DP=5411;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4570,442,0:0,0,63,85
chr1	50661688	.	T	C	456.07	PASS	AC=2;AF=0.964;AN=2;DP=643;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:779,75,0:0,0,9,16
chr1	50666515	.	C	T	2549.56	PASS	AC=2;AF=0.93;AN=2;DP=4866;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3767,358,0:0,0,77,43
chr1	50884230	.	G	C	1153.19	PASS	AC=2;AF=0.907;AN=2;DP=1920;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1585,137,0:0,0,15,31
chr1	50884778	.	G	A	2754.64	PASS	AC=2;AF=0.825;AN=2;DP=3524;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3701,361,0:0,0,59,64
chr1	50956163	.	AAAGG	A	337.34	PASS	AC=1;AF=0.661;AN=2;DP=819;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:516,0,916:21,3,12,2
chr1	50956212	.	C	CAAATACAGTGG	2796.52	PASS	AC=2;AF=1;AN=2;DP=2438;FS=0;MQ=60;MQRankSum=1.13;ReadPosRankSum=1.506;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:4093,273,0:0,0,52,29
chr1	50957509	.	A	T	1005.29	PASS	AC=2;AF=0.884;AN=2;DP=1225;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1016,78,0:0,0,2,24
chr1	51078223	.	G	A	1020.89	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0.993;FractionInformativeReads=1;MQ=60;MQRankSum=0.258;QD=15.24;ReadPosRankSum=1.292;SOR=0.871;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:1049,0,740:10,20,11,26
chr1	51433821	.	G	GC	4003.05	PASS	AC=2;AF=1;AN=2;DP=5111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,101:102:99:3517,271,0:1,0,33,68
chr1	51433863	.	G	GC	2555.53	PASS	AC=2;AF=1;AN=2;DP=3260;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2064,177,0:0,0,22,36
chr1	51433888	.	A	AG	2310.98	PASS	AC=2;AF=1;AN=2;DP=2875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2129,172,0:0,0,26,31
chr1	51439506	.	T	A	271.86	PASS	AC=1;AF=0.5;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:696,0,461:12,5,18,4
chr1	51567930	.	A	G	1832.94	PASS	AC=1;AF=0.5;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:93,102:195:99:2615,0,2411:50,43,56,46
chr1	51701842	.	C	T	288.82	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.051;QD=20.63;ReadPosRankSum=-2.333;SOR=1.179;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:317,0,99:3,1,8,2
chr1	51702087	.	C	G	185.54	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.063;QD=5.99;ReadPosRankSum=0.74;SOR=0.976;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:214,0,598:8,13,3,7
chr1	51702170	.	G	C	210.71	PASS	AC=1;AF=0.5;AN=2;DP=48;set=variant5-variant15-variant16-variant17-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:60:60,0,292:2,5,2,0
chr1	51752916	.	G	A	1527.85	PASS	AC=1;AF=0.583;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant17	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1592,0,1466:36,24,41,19
chr1	51753722	.	G	A	906.38	PASS	AC=1;AF=0.5;AN=2;DP=535;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant17	GT:AD:DP:GQ:PL:SB	0/1:46,63:109:99:1691,0,1273:20,26,30,33
chr1	51754726	.	C	T	405.29	PASS	AC=1;AF=0.5;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant17	GT:AD:DP:GQ:PL:SB	0/1:40,33:73:99:830,0,842:18,22,12,21
chr1	51761602	.	G	T	888.67	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.138;QD=19.75;ReadPosRankSum=1.482;SOR=0.556;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:917,0,669:16,3,21,5
chr1	51764187	.	A	G	1443.95	PASS	AC=1;AF=0.5;AN=2;DP=204;FractionInformativeReads=1;MQ=60;set=variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1472,0,1492:29,35,28,35
chr1	51766490	.	G	A	1744.35	PASS	AC=1;AF=0.5;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant28-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,66:160:99:1773,0,2500:35,59,21,45
chr1	51766636	.	C	A	547.09	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=2.268;FractionInformativeReads=1;MQ=60;MQRankSum=-0.795;QD=9.43;ReadPosRankSum=-2.559;SOR=0.562;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:575,0,1024:20,15,11,12
chr1	51767432	.	C	T	1787.42	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.36;QD=13.75;ReadPosRankSum=-0.913;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:65,65:130:99:1816,0,1668:28,37,28,37
chr1	51777748	.	A	G	548.34	PASS	AC=1;AF=0.571;AN=2;DP=307;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant17-variant30	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:542,0,714:16,9,14,5
chr1	51796218	.	C	A	359.23	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant28-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:387,0,496:11,11,9,10
chr1	51808467	.	C	T	201.47	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:404,0,577:13,5,11,5
chr1	51808567	.	C	T	659.74	PASS	AC=1;AF=0.595;AN=2;DP=1313;MQ=60;set=variant-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,28:68:99:734,0,891:21,19,16,12
chr1	51820016	.	T	A	868.95	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1130,0,1501:36,15,28,16
chr1	51820415	.	G	A	421.9	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:762,0,1080:15,21,11,20
chr1	51820990	.	T	G	2137.79	PASS	AC=1;AF=0.595;AN=2;DP=2627;set=variant-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,65:143:99:1707,0,2253:41,37,39,26
chr1	51822188	.	GA	G	108.15	PASS	AC=1;AF=0.5;AN=2;DP=717;MQ=60;set=filterInvariant8-filterInvariant12-variant14-variant15-filterInvariant17-filterInvariant21-filterInvariant24-filterInvariant34-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:946,0,883:30,13,35,14
chr1	51826921	.	T	C	1764.49	PASS	AC=1;AF=0.595;AN=2;DP=2805;MQ=60;set=variant-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,58:139:99:1427,0,1994:34,47,26,32
chr1	51831570	.	T	C	459.04	PASS	AC=1;AF=0.5;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:700,0,873:20,12,17,11
chr1	51869004	.	T	C	611.66	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:500,0,818:21,9,13,7
chr1	51871438	.	G	GACTC	365.22	PASS	AC=1;AF=0.595;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:797,0,757:14,0,16,1
chr1	51873951	.	G	A	2727.23	PASS	AC=1;AF=0.789;AN=2;DP=3063;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,51:109:99:1136,0,1468:24,34,21,30
chr1	51874987	.	C	G	354.03	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:319,0,443:10,5,9,1
chr1	51905949	.	CTGTGTGTGTG	CTGTGTG,CTGTGTGTGTGTG,CTGTGTGTG,CTGTGTGTGTGTGTG,CTGTG,C	2181.46	PASS	AC=0,0,1,0,0,0;AF=0.225,0.263,0.075,0.025,0.063,0.013;AN=2;DP=2747;set=variant-variant2-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:95:99:27,17,29,22
chr1	51905956	.	T	C	727.6	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=0.753;FractionInformativeReads=0.954;MQ=60;MQRankSum=-0.027;QD=6.68;ReadPosRankSum=1.39;SOR=0.611;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:65,39:104:99:756,0,2688:38,27,22,17
chr1	51913564	.	T	C	209.66	PASS	AC=1;AF=0.6;AN=2;DP=158;MQ=60;set=variant11-variant14-variant15-variant16-variant17	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:439,0,589:15,5,13,3
chr1	51913572	.	T	TA	523.41	PASS	AC=1;AF=0.5;AN=2;DP=88;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:394,0,584:18,7,13,4
chr1	51923614	.	C	A	1875.42	PASS	AC=1;AF=0.595;AN=2;DP=2688;MQ=60;set=variant-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,63:136:99:1455,0,1910:41,32,34,29
chr1	51923982	.	TA	T,TAA	376.02	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=216;MQ=60;set=variant14-variant15-variant31	GT:DP:GQ:SB	0/1:73:99:20,14,29,10
chr1	51924159	.	G	A	1421.93	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:54,92:146:99:2445,0,1361:16,38,31,61
chr1	51926978	.	C	G	170.87	PASS	AC=1;AF=0.5;AN=2;DP=37;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:400,0,340:4,9,1,11
chr1	51929504	.	TA	T	411.85	PASS	AC=1;AF=0.595;AN=2;DP=778;MQ=60;set=variant-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:754,0,752:6,18,10,14
chr1	51931089	.	C	T	337.3	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:482,0,626:4,16,3,13
chr1	51938639	.	G	A	1977.54	PASS	AC=1;AF=0.5;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:70,52:122:99:1160,0,1554:35,35,21,31
chr1	51955827	.	G	A	397.76	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:750,0,684:16,13,17,13
chr1	51956050	.	T	A	124.46	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:99:142,0,143:0,2,2,2
chr1	51985020	.	C	T	151.77	PASS	AC=2;AF=1;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;QD=30.46;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,2,2
chr1	51985042	.	C	T	36.27	PASS	AC=2;AF=0.75;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant15-variant16-variant17-variant19	GT:AD:DP:GQ:PL:SB	1/1:1,4:5:5:170,5,0:0,1,2,2
chr1	52266242	.	G	A	1741.68	PASS	AC=2;AF=0.679;AN=2;DP=4629;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5531,563,0:0,0,91,97
chr1	52279650	.	T	G	1391.65	PASS	AC=2;AF=0.75;AN=2;DP=3859;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,110:112:99:3198,286,0:1,1,59,51
chr1	52289220	.	TGTATTAAGGTCAA	T	584.75	PASS	AC=1;AF=0.655;AN=2;DP=948;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,22:23:88:886,0,88:1,0,17,5
chr1	52290984	.	T	G	426.6	PASS	AC=2;AF=0.679;AN=2;DP=1103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1490,155,0:0,0,30,22
chr1	52293570	.	G	A	643.62	PASS	AC=2;AF=0.691;AN=2;DP=1578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2125,200,0:0,0,22,45
chr1	52293638	.	G	A	324.76	PASS	AC=2;AF=1;AN=2;DP=540;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:796,60,0:0,0,2,18
chr1	52306063	.	ATCT	A	848.96	PASS	AC=2;AF=0.672;AN=2;DP=1549;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2629,183,0:0,0,30,31
chr1	52344414	.	A	C	534	PASS	AC=2;AF=0.679;AN=2;DP=1946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1756,160,0:0,0,13,41
chr1	52374952	.	A	C	2628.45	PASS	AC=2;AF=0.735;AN=2;DP=6404;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:7474,728,0:0,0,144,99
chr1	52375424	.	T	C	1481.3	PASS	AC=2;AF=0.763;AN=2;DP=4926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3824,354,0:0,0,64,54
chr1	52375564	.	T	C	1107.37	PASS	AC=1;AF=0.5;AN=2;DP=581;MQ=60;set=variant7-variant15-variant17-variant24-variant28-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:991,0,1148:14,26,10,26
chr1	52375612	.	T	G	745.46	PASS	AC=2;AF=0.798;AN=2;DP=2266;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2043,177,0:0,0,22,37
chr1	52375872	.	T	C	445.5	PASS	AC=2;AF=0.763;AN=2;DP=1572;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1314,129,0:0,0,19,24
chr1	52378274	.	A	T	46.69	PASS	AC=2;AF=1;AN=2;DP=94;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:124,12,0:0,0,3,1
chr1	52379149	.	C	T	452.7	PASS	AC=2;AF=0.726;AN=2;DP=1404;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,30:33:19:670,19,0:1,2,6,24
chr1	52381363	.	GTTT	G	1997.31	PASS	AC=2;AF=0.729;AN=2;DP=3876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:7041,482,0:0,0,57,103
chr1	52381552	.	G	A	373.85	PASS	AC=2;AF=0.75;AN=2;DP=443;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:790,57,0:0,0,13,6
chr1	52383083	.	G	A	72.22	PASS	AC=2;AF=0.798;AN=2;DP=812;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:657,60,0:0,0,9,11
chr1	52383255	.	T	C	96.2	PASS	AC=2;AF=0.848;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:124,9,0:0,0,0,3
chr1	52384643	.	CTTTTTTTTTTTTT	C,CTTTTTTTTTTTT,CTTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTT	937.68	PASS	AC=2,0,0,0,0;AF=0.571,0.095,0.012,0.036,0.012;AN=2;DP=2150;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:51:99:0,0,6,45
chr1	52402856	.	T	G	1465.15	PASS	AC=2;AF=0.932;AN=2;DP=1997;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1271,110,0:0,0,20,17
chr1	52402956	.	G	A	2926.21	PASS	AC=2;AF=0.932;AN=2;DP=4858;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3781,361,0:0,0,72,49
chr1	52486377	.	G	T	922.71	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=1.953;FractionInformativeReads=1;MQ=60;MQRankSum=-0.819;QD=13.18;ReadPosRankSum=-0.984;SOR=0.957;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:951,0,1107:19,19,18,14
chr1	52489322	.	G	A	3191.24	PASS	AC=2;AF=1;AN=2;DP=3943;FS=0;MQ=60;MQRankSum=-1.102;ReadPosRankSum=0.824;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3386,318,0:0,0,37,69
chr1	52490418	.	C	T	1241.39	PASS	AC=2;AF=0.886;AN=2;DP=1233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,38:39:99:1221,107,0:1,0,12,26
chr1	52517412	.	A	G	3673.1	PASS	AC=2;AF=0.886;AN=2;DP=6232;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4051,421,0:0,0,76,65
chr1	52520858	.	CACA	C	1857.95	PASS	AC=1;AF=0.6;AN=2;DP=587;MQ=60;set=variant3-variant4-variant15-variant18-variant22	GT:AD:DP:GQ:PL:SB	0/1:64,57:121:99:2165,0,3019:35,29,33,24
chr1	52521062	.	A	T	2350.32	PASS	AC=2;AF=1;AN=2;DP=4471;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=1.704;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3253,300,0:0,0,40,60
chr1	52521776	.	C	T	1164	PASS	AC=2;AF=1;AN=2;DP=3057;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2245,230,0:0,0,39,38
chr1	52521798	.	G	T	1275.48	PASS	AC=2;AF=1;AN=2;DP=3045;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,74:76:99:2186,176,0:1,1,36,38
chr1	52530736	.	CTG	C	1089.26	PASS	AC=2;AF=0.575;AN=2;DP=1194;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2593,175,0:0,0,15,43
chr1	52555388	.	C	T	8798.47	PASS	AC=2;AF=0.943;AN=2;DP=9418;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:8085,749,0:0,0,135,115
chr1	52555593	.	C	G	11249.3	PASS	AC=2;AF=0.943;AN=2;DP=11056;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,317:317:99:9924,949,0:0,0,150,167
chr1	52608109	.	G	C	2279.93	PASS	AC=2;AF=0.966;AN=2;DP=2912;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2743,267,0:0,0,34,55
chr1	52705383	.	A	AT	32.34	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=32;FS=2.754;FractionInformativeReads=0.594;MQ=60;MQRankSum=0.25;QD=1.01;ReadPosRankSum=-0.75;SOR=0.169;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:70:70,0,415:2,13,1,3
chr1	52729425	.	TC	TCCC,TTCCCCCC,TTCCCCCCCC,T,TTCCCCCCC,TCC	133.9	PASS	AC=0,0,0,0,1,0;AF=0.188,0.063,0.063,0.125,0.063,0.063;AN=2;DP=573;MQ=60;set=filterInvariant2-filterInvariant7-variant8-variant9-variant11-variant15-variant39-variant41	GT:DP:GQ:SB	0/5:76:99:18,42,16,0
chr1	52761799	.	GTA	G	146.94	PASS	AC=1;AF=0.5;AN=2;DP=45;MQ=60;set=variant13-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:77:77,0,330:1,9,1,2
chr1	52818188	.	G	A	452.56	PASS	AC=1;AF=0.724;AN=2;DP=767;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,7:26:99:156,0,473:9,10,3,4
chr1	52819888	.	A	G	617.18	PASS	AC=2;AF=1;AN=2;DP=707;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:429,36,0:0,0,10,2
chr1	52820226	.	G	A	3563.65	PASS	AC=2;AF=1;AN=2;DP=5972;FS=0;MQ=60;MQRankSum=0.554;ReadPosRankSum=-0.091;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4539,419,0:0,0,67,73
chr1	52838992	.	A	G	1344.74	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0.705;FractionInformativeReads=1;MQ=60;MQRankSum=-0.783;QD=12.01;ReadPosRankSum=1.231;SOR=0.841;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:56,56:112:99:1373,0,1270:28,28,26,30
chr1	52851729	.	G	A	363.32	PASS	AC=1;AF=0.69;AN=2;DP=769;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:511,0,630:10,15,7,13
chr1	52888937	.	T	A	747.69	PASS	AC=2;AF=1;AN=2;DP=1142;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1109,111,0:0,0,23,14
chr1	53067914	.	T	G	36.65	PASS	AC=1;AF=0.694;AN=2;DP=502;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:181,0,264:7,2,5,1
chr1	53068093	.	G	T	4553.11	PASS	AC=1;AF=0.625;AN=2;DP=3099;MQ=60;set=variant3-variant4-variant8-variant10-variant12-variant13-variant15-variant18-variant22-variant26-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:134,151:285:99:3775,0,3281:72,62,91,60
chr1	53072454	.	T	C	884.59	PASS	AC=2;AF=0.884;AN=2;DP=5198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4709,449,0:0,0,69,81
chr1	53073838	.	G	T	742.25	PASS	AC=1;AF=0.625;AN=2;DP=806;MQ=60;set=variant3-variant4-variant8-variant10-variant12-variant13-variant15-variant18-variant22-variant26-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:32,47:79:99:993,0,616:17,15,24,23
chr1	53074532	.	C	A	3801.54	PASS	AC=1;AF=0.667;AN=2;DP=12420;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:236,186:422:99:4597,0,5842:135,101,111,75
chr1	53153916	.	AT	A,ATT	48.8	PASS	AC=1,0;AF=0.48,0.02;AN=2;DP=965;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-variant7-filterInvariant12-variant13-filterInvariant15-variant16-variant19-variant20-filterInvariant21-filterInvariant24-variant27-variant29-variant30-filterInvariant32-variant33-variant34-filterInvariant35-variant37-variant39-variant41-filterInvariant43	GT:DP:GQ:SB	0/1:22:93:3,12,0,7
chr1	53192082	.	T	G	597.65	PASS	AC=2;AF=0.633;AN=2;DP=987;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1168,105,0:0,0,23,12
chr1	53192112	.	T	C	861.24	PASS	AC=2;AF=0.633;AN=2;DP=1499;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1601,159,0:0,0,30,23
chr1	53192187	.	C	T	2618.59	PASS	AC=2;AF=0.989;AN=2;DP=3504;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,88:89:99:2443,254,0:0,1,51,37
chr1	53237526	.	G	A	496.5	PASS	AC=2;AF=0.603;AN=2;DP=544;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1050,90,0:0,0,8,22
chr1	53245472	.	A	T	627.14	PASS	AC=2;AF=0.603;AN=2;DP=2663;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2451,233,0:0,0,52,26
chr1	53250650	.	G	A	1392.28	PASS	AC=2;AF=0.603;AN=2;DP=3435;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3859,369,0:0,0,53,70
chr1	53271225	.	T	C	573.28	PASS	AC=2;AF=0.611;AN=2;DP=1058;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1277,125,0:0,0,14,28
chr1	53291325	.	TAAAA	TA,TAA,TAAA,T	2024.96	PASS	AC=0,0,2,0;AF=0.298,0.357,0.119,0.06;AN=2;DP=4946;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:87:18:5,6,36,40
chr1	53308091	.	ATGTGTGTGTG	ATG,ATGTGTG,A,ATGTGTGTGTGTGTG,ATGTGTGTGTGTG,ATGTG,ATGTGTGTGTGTGTGTG	337.74	PASS	AC=0,0,0,2,0,0,0;AF=0.476,0.024,0.048,0.19,0.024,0.071,0.048;AN=2;DP=90;FS=0;set=variant2-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant19-variant20-variant24-variant25-variant27-variant29-variant31-variant32-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	4/4:2:9:0,0,1,1
chr1	53329942	.	G	A	621.48	PASS	AC=1;AF=0.5;AN=2;DP=85;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:464,0,705:3,17,1,13
chr1	53360525	.	T	C	3703.01	PASS	AC=1;AF=0.5;AN=2;DP=538;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:107,139:246:99:3601,0,2834:33,74,52,87
chr1	53513437	.	T	C	941.41	PASS	AC=2;AF=0.672;AN=2;DP=568;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1537,117,0:0,0,35,4
chr1	53529173	.	C	T	473.45	PASS	AC=1;AF=0.667;AN=2;DP=263;MQ=60;set=variant10-variant12-variant13-variant15-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:613,0,397:9,10,12,17
chr1	53535478	.	G	A	1236.26	PASS	AC=2;AF=0.638;AN=2;DP=2641;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,111:112:99:3246,289,0:1,0,50,61
chr1	53537266	.	G	A	4011.22	PASS	AC=2;AF=0.617;AN=2;DP=9718;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,382:382:99:11274,1141,0:0,0,171,211
chr1	53543112	.	C	G	1788.6	PASS	AC=2;AF=0.977;AN=2;DP=2399;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2854,212,0:0,0,4,67
chr1	53544439	.	G	A	10011	PASS	AC=2;AF=0.718;AN=2;DP=16669;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,508:509:99:15549,1508,0:1,0,220,288
chr1	53544597	.	T	C	1118.32	PASS	AC=2;AF=0.94;AN=2;DP=6001;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6088,611,0:0,0,77,127
chr1	53550187	.	C	T	790.42	PASS	AC=2;AF=0.965;AN=2;DP=1887;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1427,131,0:0,0,33,11
chr1	53553485	.	A	G	1247.09	PASS	AC=2;AF=0.726;AN=2;DP=4466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3207,300,0:0,0,46,54
chr1	53553702	.	A	G	2324.32	PASS	AC=2;AF=1;AN=2;DP=4683;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4416,426,0:0,0,72,70
chr1	53553754	.	T	C	3027.88	PASS	AC=2;AF=0.718;AN=2;DP=4433;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4675,448,0:0,0,70,80
chr1	53555783	.	A	C	781.59	PASS	AC=2;AF=0.929;AN=2;DP=3981;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3253,297,0:0,0,31,68
chr1	53558270	.	A	G	1270.01	PASS	AC=2;AF=0.767;AN=2;DP=5153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4434,386,0:0,0,92,37
chr1	53559310	.	T	C	315.02	PASS	AC=2;AF=0.756;AN=2;DP=1659;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2080,165,0:0,0,14,41
chr1	53569399	.	A	G	90.18	PASS	AC=2;AF=0.786;AN=2;DP=497;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:611,45,0:0,0,2,13
chr1	53571288	.	C	G	1066.5	PASS	AC=2;AF=1;AN=2;DP=1280;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.315;ReadPosRankSum=-0.788;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1164,102,0:0,0,25,9
chr1	53574076	.	G	A	554.68	PASS	AC=2;AF=0.756;AN=2;DP=2621;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2779,246,0:0,0,49,33
chr1	53574123	.	C	T	3255.45	PASS	AC=2;AF=1;AN=2;DP=3899;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3578,324,0:0,0,65,43
chr1	53608133	.	C	A	1909.24	PASS	AC=1;AF=0.5;AN=2;DP=2023;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant20-variant21-variant22-variant32-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,101:167:99:2428,0,1775:30,36,45,56
chr1	53608375	.	A	G	191.53	PASS	AC=2;AF=1;AN=2;DP=560;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:682,63,0:0,0,9,12
chr1	53608425	.	C	A	189.77	PASS	AC=1;AF=0.75;AN=2;DP=146;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant24-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:189,0,185:1,5,0,5
chr1	53662823	.	C	A	3362.04	PASS	AC=1;AF=0.588;AN=2;DP=1978;set=variant-variant6-variant8-variant10-variant13-variant15-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:72,75:147:99:1654,0,1726:33,39,36,39
chr1	53676448	.	G	A	2675.13	PASS	AC=2;AF=0.7;AN=2;DP=3545;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3780,341,0:0,0,66,48
chr1	53679229	.	A	G	2164.73	PASS	AC=1;AF=0.588;AN=2;DP=1274;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant10-variant13-variant15-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,46:84:99:1221,0,1078:10,28,17,29
chr1	53679878	.	T	C	3099.38	PASS	AC=1;AF=0.58;AN=2;DP=2824;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,69:139:99:1821,0,1915:28,42,28,41
chr1	53680090	.	G	A	2111.27	PASS	AC=1;AF=0.58;AN=2;DP=1567;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1143,0,1077:21,21,22,19
chr1	53681699	.	T	G	1826.25	PASS	AC=1;AF=0.588;AN=2;DP=1718;MQ=60;set=variant-variant6-variant8-variant10-variant13-variant15-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:80,59:139:99:1495,0,1994:34,46,23,36
chr1	53683921	.	C	G	2421.2	PASS	AC=1;AF=0.58;AN=2;DP=1608;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:760,0,1054:14,24,15,15
chr1	53684324	.	A	G	972.16	PASS	AC=1;AF=0.58;AN=2;DP=764;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:583,0,340:4,10,5,14
chr1	53684525	.	C	G	3093.41	PASS	AC=2;AF=0.805;AN=2;DP=3603;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:2889,302,0:0,0,58,43
chr1	53686383	.	C	G	400.06	PASS	AC=2;AF=0.805;AN=2;DP=853;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:928,81,0:0,0,10,17
chr1	53692437	.	T	A	169.58	PASS	AC=1;AF=0.587;AN=2;DP=203;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:90:270,0,90:2,1,7,1
chr1	53692488	.	A	G	430.8	PASS	AC=1;AF=0.587;AN=2;DP=457;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant22-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:99:467,0,122:4,1,12,3
chr1	53694388	.	T	C	649.22	PASS	AC=1;AF=0.583;AN=2;DP=422;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:450,0,127:4,2,11,4
chr1	53711735	.	G	C	1261.34	PASS	AC=2;AF=0.643;AN=2;DP=1657;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2258,192,0:0,0,41,23
chr1	53712223	.	GT	G,GTT	352.82	PASS	AC=0,1;AF=0.459,0.041;AN=2;DP=2959;MQ=60;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant21-filterInvariant22-variant24-filterInvariant25-filterInvariant27-variant28-filterInvariant30-variant31-filterInvariant33-variant34-filterInvariant35-variant36-variant38-filterInvariant39-variant40-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/2:73:99:25,25,9,14
chr1	53712727	.	C	T	1202.39	PASS	AC=2;AF=0.643;AN=2;DP=2788;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3282,303,0:0,0,37,64
chr1	53716416	.	G	A	1413.98	PASS	AC=2;AF=0.643;AN=2;DP=3787;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5323,509,0:0,0,74,96
chr1	53722752	.	A	C	227.43	PASS	AC=2;AF=0.643;AN=2;DP=435;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:711,60,0:0,0,15,5
chr1	53723190	.	G	T	841.73	PASS	AC=2;AF=0.643;AN=2;DP=3904;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:6020,553,0:0,0,68,117
chr1	53723349	.	T	C	169.22	PASS	AC=2;AF=0.643;AN=2;DP=311;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:697,54,0:0,0,2,16
chr1	53732315	.	G	T	1289.66	PASS	AC=2;AF=0.643;AN=2;DP=3469;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,157:159:99:4759,425,0:1,1,58,99
chr1	53736613	.	A	G	209.12	PASS	AC=2;AF=0.643;AN=2;DP=758;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1030,81,0:0,0,24,3
chr1	53738183	.	A	G	194.32	PASS	AC=2;AF=0.643;AN=2;DP=1404;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2504,225,0:0,0,50,25
chr1	53742506	.	A	G	497.86	PASS	AC=1;AF=0.625;AN=2;DP=1917;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1031,0,822:16,20,20,23
chr1	53746134	.	G	A	446.86	PASS	AC=1;AF=0.621;AN=2;DP=1523;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:1177,0,797:19,12,26,13
chr1	53746595	.	A	T	494.24	PASS	AC=1;AF=0.621;AN=2;DP=1210;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,25:43:99:623,0,476:6,12,10,15
chr1	53755117	.	G	A	829.41	PASS	AC=2;AF=0.636;AN=2;DP=653;MQ=60;set=variant5-variant6-variant13-variant15-variant21-variant23-variant29-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2596,260,0:0,0,49,38
chr1	53974987	.	G	T	805.06	PASS	AC=1;AF=0.829;AN=2;DP=3093;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,33:81:99:732,0,1177:18,30,12,21
chr1	53990321	.	C	T	2116.62	PASS	AC=2;AF=0.837;AN=2;DP=2565;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,84:85:99:3037,243,0:1,0,65,19
chr1	54060016	.	G	C	1795.04	PASS	AC=1;AF=0.646;AN=2;DP=4811;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant26-variant27-variant28-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,97:237:99:2237,0,3782:74,66,50,47
chr1	54060248	.	T	C	2329.95	PASS	AC=1;AF=0.646;AN=2;DP=4564;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant26-variant27-variant28-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,120:233:99:3108,0,2617:59,54,60,60
chr1	54065648	.	G	A	53.54	PASS	AC=2;AF=0.93;AN=2;DP=353;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:469,45,0:0,0,10,5
chr1	54065778	.	C	T	659.41	PASS	AC=2;AF=0.932;AN=2;DP=1635;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1448,143,0:0,0,27,21
chr1	54065831	.	G	T	1052.99	PASS	AC=2;AF=0.932;AN=2;DP=2295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1847,185,0:0,0,32,30
chr1	54065924	.	G	A	1481.64	PASS	AC=2;AF=0.932;AN=2;DP=2916;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2395,245,0:0,0,39,43
chr1	54065997	.	A	T	1146.95	PASS	AC=2;AF=0.932;AN=2;DP=1846;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2602,181,0:0,0,25,35
chr1	54066012	.	A	G	1003.04	PASS	AC=2;AF=0.932;AN=2;DP=1521;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2385,160,0:0,0,21,32
chr1	54066038	.	C	T	582.66	PASS	AC=2;AF=0.932;AN=2;DP=1004;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1028,103,0:0,0,12,23
chr1	54317697	.	T	C	1266.61	PASS	AC=2;AF=1;AN=2;DP=2397;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,73:75:99:2168,175,0:1,1,36,37
chr1	54344282	.	C	A	1103.92	PASS	AC=1;AF=0.689;AN=2;DP=3037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:1076,0,1400:36,21,24,17
chr1	54354658	.	T	G	302.21	PASS	AC=1;AF=0.5;AN=2;DP=899;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant24-variant28-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,37:56:99:1018,0,336:9,10,12,25
chr1	54354935	.	G	C	142.67	PASS	AC=1;AF=0.5;AN=2;DP=342;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant24-variant28-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:144,0,289:7,2,4,2
chr1	54355041	.	A	G	229.33	PASS	AC=1;AF=0.5;AN=2;DP=475;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-filterInvariant8-variant9-variant13-variant14-variant15-variant16-variant18-variant24-variant28-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:202,0,463:7,11,4,5
chr1	54355105	.	A	G	85.48	PASS	AC=1;AF=0.667;AN=2;DP=587;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:158,0,437:6,9,3,3
chr1	54355554	.	A	T,C	718.3	PASS	AC=0,1;AF=0.382,0.279;AN=2;DP=2256;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/2:74:99:15,28,11,20
chr1	54356002	.	G	T	151.84	PASS	AC=1;AF=0.5;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant24-variant28-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:352,0,575:15,0,10,0
chr1	54356106	.	G	A	704.06	PASS	AC=1;AF=0.5;AN=2;DP=1667;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant24-variant28-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:70,64:134:99:1729,0,2738:44,26,44,20
chr1	54356113	.	C	T	1363.01	PASS	AC=1;AF=0.63;AN=2;DP=2201;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant12-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:1739,0,2595:48,22,43,30
chr1	54356341	.	C	G	400.99	PASS	AC=1;AF=0.5;AN=2;DP=625;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant24-variant28-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:619,0,905:4,12,2,16
chr1	54356347	.	A	T	385.27	PASS	AC=1;AF=0.5;AN=2;DP=533;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant24-variant28-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:406,0,828:1,11,1,9
chr1	54356361	.	C	A	246.86	PASS	AC=1;AF=0.5;AN=2;DP=375;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant24-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:239,0,400:1,10,1,7
chr1	54375348	.	T	C	760.2	PASS	AC=1;AF=0.55;AN=2;DP=477;FractionInformativeReads=1;set=variant3-variant9-variant10-variant13-variant15-variant18-variant27-variant30-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:663,0,727:18,9,14,12
chr1	54376730	.	A	G	1962.9	PASS	AC=1;AF=0.55;AN=2;DP=1087;MQ=60;set=variant3-variant9-variant10-variant13-variant15-variant18-variant27-variant30-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,63:109:99:1884,0,1176:18,28,19,44
chr1	54387577	.	T	C	480.12	PASS	AC=1;AF=0.528;AN=2;DP=442;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:537,0,443:3,11,3,13
chr1	54389200	.	A	G	2860.51	PASS	AC=1;AF=0.526;AN=2;DP=3047;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,93:183:99:2234,0,2199:51,39,56,37
chr1	54389471	.	C	A	2557.72	PASS	AC=1;AF=0.528;AN=2;DP=2441;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,58:152:99:1510,0,2460:41,53,19,39
chr1	54389517	.	G	GT	2051.55	PASS	AC=1;AF=0.528;AN=2;DP=1700;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:1183,0,1724:23,34,20,21
chr1	54395488	.	G	C	1293.22	PASS	AC=1;AF=0.528;AN=2;DP=1417;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,56:112:99:1378,0,1358:28,28,32,24
chr1	54395673	.	CA	C	395.49	PASS	AC=1;AF=0.5;AN=2;DP=4259;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,31:116:99:245,0,1390:43,42,16,15
chr1	54411468	.	C	A	345.13	PASS	AC=1;AF=0.571;AN=2;DP=202;set=variant3-variant13-variant15-variant27-variant30-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:524,0,712:3,18,2,15
chr1	54411541	.	CCTCCACCGAGTTCCCGGGCGCGCTCG	C	117.08	PASS	AC=1;AF=0.538;AN=2;DP=176;set=variant8-variant9-variant10-variant15-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:182,0,1823:3,7,2,3
chr1	54412181	.	T	C	959.33	PASS	AC=1;AF=0.525;AN=2;DP=982;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:633,0,433:5,13,12,16
chr1	54413422	.	C	T	202.13	PASS	AC=1;AF=0.529;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant13-variant15-variant17-variant18-variant20-variant21-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:168,0,261:6,4,2,4
chr1	54413516	.	C	T	120.16	PASS	AC=1;AF=0.583;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant30-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:149,0,124:1,3,2,2
chr1	54432019	.	G	A	1434.44	PASS	AC=1;AF=0.525;AN=2;DP=1873;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,62:144:99:1389,0,1937:38,44,30,32
chr1	54474472	.	T	C	341.99	PASS	AC=2;AF=0.652;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant27-variant29-variant30-variant34-variant35-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1321,120,0:0,0,25,15
chr1	54483694	.	C	T	263.31	PASS	AC=2;AF=0.609;AN=2;DP=1184;set=variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant27-variant29-variant30-variant34-variant35-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,57:59:99:1812,125,0:1,1,40,17
chr1	54509644	.	T	C	9275.9	PASS	AC=2;AF=1;AN=2;DP=12229;FS=0;MQ=60;MQRankSum=0.014;ReadPosRankSum=0.839;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,323:323:99:9906,967,0:0,0,140,183
chr1	54510012	.	C	CTCAAAA,CTCAAAAAAAA,CTCAAAAA,CTCAAAAAA,CTCAAAAAAAAA,CTCAAAAAAA	1560.06	PASS	AC=0,2,0,0,0,0;AF=0.125,0.167,0.208,0.208,0.125,0.083;AN=2;DP=174;set=variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant27-variant30-variant39-variant41-variant42	GT:DP:GQ:SB	2/2:13:91:0,0,12,1
chr1	54510014	.	C	CAAAAAA,A	2124.97	PASS	AC=0,2;AF=0.025,0.95;AN=2;DP=601;set=variant2-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant27-variant29-variant30-variant34-variant38-variant39-variant41-variant42	GT:DP:GQ:SB	2/2:34:99:0,0,28,6
chr1	54510181	.	GT	G,GTT	213.14	PASS	AC=1,0;AF=0.453,0.047;AN=2;DP=2622;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant37-filterInvariant38-variant40-filterInvariant41	GT:DP:GQ:SB	0/1:63:99:14,20,2,27
chr1	54519107	.	G	A	555.74	PASS	AC=1;AF=0.5;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant15-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,38:68:99:952,0,717:11,19,16,22
chr1	54561916	.	C	T	804.87	PASS	AC=2;AF=0.771;AN=2;DP=1168;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant29-variant30-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1638,147,0:0,0,30,19
chr1	54563039	.	G	A	6923.58	PASS	AC=2;AF=0.977;AN=2;DP=11128;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8196,844,0:0,0,142,140
chr1	54563156	.	A	G	2263.2	PASS	AC=2;AF=0.771;AN=2;DP=3810;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant29-variant30-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:6246,572,0:0,0,90,101
chr1	54563239	.	A	T	2227.21	PASS	AC=2;AF=0.614;AN=2;DP=4325;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant29-variant30-variant34-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:6670,655,0:0,0,119,100
chr1	54604576	.	G	A	156.22	PASS	AC=2;AF=1;AN=2;DP=206;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:399,33,0:0,0,8,3
chr1	54605318	.	T	TG,TGG	403.76	PASS	AC=1,0;AF=0.34,0.26;AN=2;DP=1407;MQ=60;set=variant-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant25-variant27-variant29-variant30-variant33-variant34-variant35-filterInvariant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:56:99:13,12,19,12
chr1	54605319	.	G	GC	315.63	PASS	AC=1;AF=0.716;AN=2;DP=2227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,25:60:99:541,0,945:21,14,13,12
chr1	54606804	.	C	T	3171.84	PASS	AC=2;AF=0.872;AN=2;DP=4859;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4592,412,0:0,0,94,44
chr1	54607051	.	A	G	4671.27	PASS	AC=2;AF=1;AN=2;DP=8469;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,230:230:99:7474,689,0:0,0,72,158
chr1	54607157	.	G	A	1506.45	PASS	AC=2;AF=0.872;AN=2;DP=2137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1663,131,0:0,0,7,37
chr1	54618435	.	A	T	1472.1	PASS	AC=1;AF=0.756;AN=2;DP=7763;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,125:240:99:3032,0,2683:63,52,58,67
chr1	54619337	.	C	T	813.08	PASS	AC=2;AF=0.932;AN=2;DP=1418;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1457,135,0:0,0,22,23
chr1	54619416	.	GC	G	132.73	PASS	AC=1;AF=0.559;AN=2;DP=475;MQ=60;set=variant-variant3-variant6-variant10-variant13-variant14-variant15-variant17-variant21-variant22-variant23-variant30-variant33-variant34-variant35-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:394,0,582:10,11,6,9
chr1	54636977	.	T	C	441.25	PASS	AC=1;AF=0.526;AN=2;DP=1300;MQ=60;set=variant-variant3-variant6-variant10-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant30-variant31-variant33-variant34-variant35-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,33:69:99:870,0,940:16,20,14,19
chr1	54637167	.	T	C	86.95	PASS	AC=1;AF=0.775;AN=2;DP=605;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:313,0,214:2,6,3,8
chr1	54681920	.	G	C	4098.39	PASS	AC=2;AF=0.826;AN=2;DP=6892;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5738,549,0:0,0,78,105
chr1	54686465	.	G	A	2201.26	PASS	AC=1;AF=0.5;AN=2;DP=200;FS=2.443;FractionInformativeReads=1;MQ=60;MQRankSum=-1.527;QD=11.01;ReadPosRankSum=1.755;SOR=0.528;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:104,96:200:99:2229,0,2574:60,44,51,45
chr1	54690954	.	T	C	1836.94	PASS	AC=1;AF=0.645;AN=2;DP=4732;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,72:172:99:1898,0,2870:58,42,39,33
chr1	54704563	.	G	A	243.82	PASS	AC=1;AF=0.553;AN=2;DP=949;MQ=60;set=variant-variant5-variant6-variant15-variant16-variant17-variant19-variant21-variant22-variant25-variant28-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:793,0,701:15,14,12,19
chr1	54704567	.	A	G	1203.72	PASS	AC=2;AF=0.942;AN=2;DP=1881;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2264,180,0:0,0,26,32
chr1	54870481	.	TG	TGGG,TGG,T,TGGGG	292.94	PASS	AC=1,0,0,0;AF=0.161,0.25,0.089,0.018;AN=2;DP=1208;MQ=60;set=variant-variant3-variant4-variant6-filterInvariant8-filterInvariant9-variant11-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant35-variant36-filterInvariant37-variant43	GT:DP:GQ:SB	0/1:35:99:20,2,11,2
chr1	54870494	.	T	G	132.05	PASS	AC=1;AF=0.5;AN=2;DP=765;MQ=60;set=filterInvariant3-filterInvariant6-variant10-variant15-filterInvariant16-filterInvariant17-variant19-filterInvariant23-filterInvariant24-filterInvariant25-variant26-variant29-variant32-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:42,11:53:99:174,0,1020:22,20,9,2
chr1	54871024	.	G	T	1319.97	PASS	AC=1;AF=0.632;AN=2;DP=2957;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,59:98:99:1585,0,898:22,17,40,19
chr1	54871709	.	TCGCCGCCGC	TCGCCGCCGCCGCCGC,TCGCCGCCGCCGC,TCGCCGCCGCCGCCGCCGCCGC,T	637.2	PASS	AC=1,0,0,0;AF=0.543,0.014,0.071,0.014;AN=2;DP=1795;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:47:99:17,14,9,7
chr1	54872035	.	TGCCGCCGCC	TGCCGCC,T	4449.98	PASS	AC=2,0;AF=0.932,0.011;AN=2;DP=3387;set=Intersection	GT:DP:GQ:SB	1/1:102:99:0,0,61,41
chr1	55014099	.	C	T	1466.01	PASS	AC=1;AF=0.786;AN=2;DP=5274;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,101:174:99:2815,0,1967:33,40,36,65
chr1	55014160	.	C	T	888.54	PASS	AC=1;AF=0.786;AN=2;DP=3068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,59:107:99:1745,0,1199:16,32,15,44
chr1	55063130	.	C	G,A	471.55	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=461;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:DP:GQ:SB	0/1:94:99:11,32,13,38
chr1	55064898	.	A	T	162.11	PASS	AC=2;AF=0.667;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant15-variant33-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:110,9,0:0,0,3,0
chr1	55064980	.	G	A	360.57	PASS	AC=1;AF=0.5;AN=2;DP=211;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:17,36:53:99:867,0,342:11,6,22,14
chr1	55066791	.	TGTGTGTGTATGTGTGTGCATAC	T	188.57	PASS	AC=1;AF=0.5;AN=2;DP=205;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:780,0,1626:14,2,13,7
chr1	55069651	.	C	T	267.94	PASS	AC=1;AF=0.5;AN=2;DP=305;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:683,0,864:12,21,9,19
chr1	55069986	.	T	C	932.14	PASS	AC=1;AF=0.788;AN=2;DP=3319;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,58:109:99:1446,0,1184:28,23,35,23
chr1	55070695	.	C	T	740.82	PASS	AC=1;AF=0.5;AN=2;DP=639;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:75,86:161:99:2023,0,1715:46,29,44,42
chr1	55074597	.	T	C	524.29	PASS	AC=1;AF=0.5;AN=2;DP=249;FractionInformativeReads=1;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:36,16:52:99:356,0,1048:26,10,13,3
chr1	55074922	.	G	A	1130.34	PASS	AC=1;AF=0.583;AN=2;DP=2637;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant15-variant17-variant20-variant23-variant25-variant28-variant31-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,86:175:99:2205,0,2284:51,38,50,36
chr1	55075062	.	C	T	3390.49	PASS	AC=1;AF=0.5;AN=2;DP=1583;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:125,155:280:99:3851,0,2914:60,65,80,75
chr1	55075122	.	C	G	2587.89	PASS	AC=1;AF=0.5;AN=2;DP=1380;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:113,124:237:99:3032,0,2798:51,62,60,64
chr1	55076238	.	C	A	405.23	PASS	AC=1;AF=0.5;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:519,0,655:4,17,5,14
chr1	55078046	.	T	C	772.11	PASS	AC=1;AF=0.907;AN=2;DP=1094;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:340,0,343:10,0,8,1
chr1	55080568	.	G	A	1563.25	PASS	AC=1;AF=0.5;AN=2;DP=852;MQ=60;set=variant2-variant12-variant15-variant26-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:77,71:148:99:1760,0,2019:38,39,31,40
chr1	55080612	.	GGTGT	G,GGTGTGTGTGT,GGTGTGTGT	2367.76	PASS	AC=1,0,0;AF=0.273,0.477,0.011;AN=2;DP=4698;set=Intersection	GT:DP:GQ:SB	0/1:90:99:18,32,18,22
chr1	55080629	.	A	G	2467.89	PASS	AC=1;AF=0.739;AN=2;DP=3722;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:1689,0,1701:16,30,20,25
chr1	55080745	.	TAG	T	118.68	PASS	AC=1;AF=0.611;AN=2;DP=304;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant31-variant33-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,13:19:99:520,0,214:1,5,3,10
chr1	55080844	.	C	G	250.2	PASS	AC=1;AF=0.667;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant15-variant17-variant23-variant24-variant25-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:62:124,0,62:0,3,1,3
chr1	55085499	.	T	C	345.83	PASS	AC=2;AF=0.742;AN=2;DP=1377;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1619,144,0:0,0,32,16
chr1	55089316	.	A	C	253.56	PASS	AC=1;AF=0.661;AN=2;DP=425;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:408,0,152:1,3,0,10
chr1	55089317	.	T	C	253.56	PASS	AC=1;AF=0.661;AN=2;DP=422;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:408,0,152:1,3,0,10
chr1	55100328	.	T	C	272.29	PASS	AC=1;AF=0.667;AN=2;DP=540;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:270,0,261:6,2,6,1
chr1	55103945	.	A	G	30.22	PASS	AC=1;AF=0.685;AN=2;DP=352;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:274,0,189:3,6,6,6
chr1	55104317	.	G	C	403.29	PASS	AC=1;AF=0.661;AN=2;DP=844;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:402,0,388:10,6,11,2
chr1	55104355	.	T	C	615.92	PASS	AC=1;AF=0.604;AN=2;DP=1075;set=variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:574,0,687:16,8,17,2
chr1	55104647	.	T	C	1228.94	PASS	AC=1;AF=0.604;AN=2;DP=2176;set=variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,48:92:99:1548,0,1367:9,35,6,42
chr1	55107508	.	TC	T	204.42	PASS	AC=1;AF=0.609;AN=2;DP=455;MQ=60;set=variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant32-variant34-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:181,0,499:9,7,5,2
chr1	55107607	.	G	A	315.93	PASS	AC=2;AF=1;AN=2;DP=1091;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:938,90,0:0,0,14,16
chr1	55117460	.	A	ACTCTCT,ACTCT,ACTCTGT,ACTCTCTCTCTCT,ACTCTCTCT	52.73	PASS	AC=0,2,0,0,0;AF=0.478,0.37,0.022,0.043,0.043;AN=2;DP=94;FS=0;MQRankSum=0.731;set=variant-variant2-variant4-variant5-variant8-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant34-variant37-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:2:6:0,0,2,0
chr1	55117497	.	T	G	138.89	PASS	AC=2;AF=0.906;AN=2;DP=290;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:288,21,0:0,0,6,1
chr1	55118566	.	C	G	2343.41	PASS	AC=2;AF=1;AN=2;DP=5145;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3750,377,0:0,0,68,58
chr1	55119144	.	A	G	1695.21	PASS	AC=1;AF=0.645;AN=2;DP=4552;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,83:162:99:2153,0,1898:41,38,43,40
chr1	55119289	.	G	C	5352.67	PASS	AC=1;AF=0.705;AN=2;DP=6215;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,83:199:99:2075,0,2956:59,57,44,39
chr1	55119515	.	T	G	2807.71	PASS	AC=1;AF=0.568;AN=2;DP=4538;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,97:239:99:2158,0,3385:63,79,44,53
chr1	55119546	.	A	G	3176.3	PASS	AC=2;AF=1;AN=2;DP=8282;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:6522,654,0:0,0,98,121
chr1	55129358	.	TA	TAA,T	117.7	PASS	AC=1,0;AF=0.278,0.222;AN=2;DP=181;MQ=60;set=variant10-variant15-variant21-variant26-filterInvariant31-variant36-variant38-variant39-variant41	GT:DP:GQ:SB	0/1:23:99:12,2,6,3
chr1	55130931	.	C	T	731.34	PASS	AC=1;AF=0.689;AN=2;DP=2695;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1237,0,1190:12,32,16,33
chr1	55130946	.	G	C	644.13	PASS	AC=1;AF=0.703;AN=2;DP=2158;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:953,0,1075:6,28,8,25
chr1	55130972	.	C	T	259.9	PASS	AC=2;AF=0.884;AN=2;DP=1694;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1367,108,0:0,0,6,30
chr1	55134379	.	C	T	490.9	PASS	AC=2;AF=0.884;AN=2;DP=1085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1028,81,0:0,0,23,4
chr1	55134487	.	G	A	918.35	PASS	AC=1;AF=0.6;AN=2;DP=2179;MQ=60;set=variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,60:127:99:1301,0,1465:38,29,34,26
chr1	55136067	.	T	G	285.14	PASS	AC=2;AF=0.895;AN=2;DP=1261;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1450,117,0:0,0,31,8
chr1	55136356	.	C	T	301.72	PASS	AC=1;AF=0.5;AN=2;DP=132;MQ=60;set=variant2-variant10-variant15-variant23-variant30-variant36-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:450,0,165:2,4,2,10
chr1	55136529	.	T	C	1047.48	PASS	AC=1;AF=0.619;AN=2;DP=2552;MQ=60;set=variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,81:176:99:1826,0,2113:51,44,42,39
chr1	55139741	.	A	G	1115.68	PASS	AC=2;AF=0.86;AN=2;DP=3946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3534,351,0:0,0,59,58
chr1	55139912	.	T	G	542.42	PASS	AC=2;AF=0.542;AN=2;DP=538;MQ=60;set=variant2-variant10-variant12-variant15-variant26-variant30-variant35-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1599,141,0:0,0,15,32
chr1	55162724	.	G	A	196.77	PASS	AC=1;AF=0.727;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant10-variant12-variant15-variant19-variant20-variant21-variant26-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,246:3,1,5,1
chr1	55162732	.	C	T	246.1	PASS	AC=1;AF=0.727;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant10-variant12-variant15-variant19-variant20-variant21-variant26-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:262,0,243:2,1,5,2
chr1	55163655	.	G	A	1713.19	PASS	AC=1;AF=0.619;AN=2;DP=1655;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:1040,0,1094:22,17,16,25
chr1	55163751	.	T	C	1509.64	PASS	AC=1;AF=0.619;AN=2;DP=1848;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,35:118:99:876,0,2004:41,42,18,17
chr1	55163836	.	A	C	1810.76	PASS	AC=1;AF=0.619;AN=2;DP=1662;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,40:103:99:1035,0,1769:29,34,25,15
chr1	55164116	.	T	G	3392.5	PASS	AC=1;AF=0.619;AN=2;DP=2449;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:1319,0,1861:34,32,24,30
chr1	55164470	.	CT	C	432.37	PASS	AC=1;AF=0.658;AN=2;DP=430;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant20-variant21-variant22-variant26-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:128,0,268:2,11,0,8
chr1	55165268	.	G	A	583.49	PASS	AC=1;AF=0.643;AN=2;DP=735;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:486,0,441:10,10,12,7
chr1	55165573	.	G	A	1236.87	PASS	AC=1;AF=0.643;AN=2;DP=1000;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:607,0,945:24,15,11,14
chr1	55165942	.	G	A	3337.05	PASS	AC=1;AF=0.643;AN=2;DP=3052;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,71:168:99:1723,0,2525:44,53,36,35
chr1	55166842	.	C	T	832.68	PASS	AC=1;AF=0.704;AN=2;DP=1029;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,32:46:99:947,0,318:11,3,23,9
chr1	55167773	.	T	A	2209.81	PASS	AC=1;AF=0.837;AN=2;DP=3909;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,47:108:99:995,0,1377:31,30,20,27
chr1	55175322	.	A	G	529	PASS	AC=1;AF=0.677;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:266,0,308:8,0,7,3
chr1	55182300	.	T	A	2579.29	PASS	AC=1;AF=0.697;AN=2;DP=2675;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1202,0,1370:27,27,27,23
chr1	55199104	.	T	A	614.39	PASS	AC=1;AF=0.717;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant15-variant17-variant21-variant22-variant27-variant28-variant30-variant33-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:97:97,0,629:8,3,4,0
chr1	55199105	.	A	AT,AAT	269.69	PASS	AC=0,1;AF=0.667,0.167;AN=2;DP=35;FractionInformativeReads=1;MQ=60;MQRankSum=0.057;ReadPosRankSum=-0.057;set=variant7-variant15-variant38	GT:DP:GQ:SB	0/2:17:97:10,3,4,0
chr1	55199420	.	ATTTTTTTTTT	AT,ATT,A,ATTTTTTT,ATTTTTT,ATTTTTTTTT,ATTTTTTTT	1694.42	PASS	AC=0,1,0,0,0,0,0;AF=0.129,0.403,0.081,0.016,0.016,0.032,0.032;AN=2;DP=2204;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant28-filterInvariant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant43-variant44	GT:DP:GQ:SB	0/2:41:99:5,15,5,16
chr1	55207754	.	C	G	1311.08	PASS	AC=1;AF=0.712;AN=2;DP=1553;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,17:54:99:397,0,939:21,16,9,8
chr1	55208299	.	G	C	330.43	PASS	AC=1;AF=0.712;AN=2;DP=776;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:247,0,485:6,10,3,7
chr1	55222466	.	A	G	46.5	PASS	AC=2;AF=0.78;AN=2;DP=136;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant15-variant16-variant20-variant21-variant22-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr1	55224131	.	T	C	1587.98	PASS	AC=1;AF=0.647;AN=2;DP=1671;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant15-variant16-variant18-variant20-variant21-variant24-variant28-variant35-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,61:130:99:1696,0,1843:40,29,40,21
chr1	55224751	.	C	A	3185.03	PASS	AC=1;AF=0.647;AN=2;DP=2877;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant15-variant16-variant18-variant20-variant21-variant24-variant28-variant35-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,114:214:99:2647,0,2428:50,50,51,63
chr1	55224773	.	A	C	1998.7	PASS	AC=1;AF=0.5;AN=2;DP=602;MQ=60;set=variant15-variant30-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:105,80:185:99:2027,0,2573:48,57,37,43
chr1	55230233	.	T	C	1938.96	PASS	AC=1;AF=0.689;AN=2;DP=2841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,44:102:99:985,0,1465:20,38,17,27
chr1	55246179	.	AG	A,AGG	130.47	PASS	AC=1,0;AF=0.563,0.125;AN=2;DP=44;FS=0;MQ=60;set=variant5-variant8-variant15-variant29-variant36-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:6:23:2,0,3,1
chr1	55251689	.	T	C	2837.61	PASS	AC=2;AF=1;AN=2;DP=4165;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4038,390,0:0,0,80,50
chr1	55253575	.	T	C	2504.49	PASS	AC=2;AF=1;AN=2;DP=4136;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3496,314,0:0,0,44,61
chr1	55266845	.	C	T	2205.25	PASS	AC=2;AF=0.654;AN=2;DP=8213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,241:241:99:7363,721,0:0,0,93,148
chr1	55271774	.	A	G	1938.32	PASS	AC=2;AF=0.654;AN=2;DP=6845;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6227,611,0:0,0,108,96
chr1	55273580	.	G	T	663.66	PASS	AC=2;AF=0.667;AN=2;DP=3293;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3272,338,0:0,0,57,56
chr1	55273664	.	C	T	1082.89	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=2.65;FractionInformativeReads=1;MQ=60;MQRankSum=0.112;QD=10.72;ReadPosRankSum=2.055;SOR=0.447;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,51:101:99:1111,0,1271:18,32,22,29
chr1	55277430	.	T	A	355.84	PASS	AC=2;AF=0.684;AN=2;DP=1266;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1321,137,0:0,0,22,24
chr1	55277599	.	T	C	3047.53	PASS	AC=2;AF=1;AN=2;DP=6748;FS=0;MQ=60;MQRankSum=1.687;ReadPosRankSum=0.849;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4444,475,0:0,0,87,72
chr1	55279345	.	CCCGGCCT	C	367.95	PASS	AC=2;AF=1;AN=2;DP=420;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:675,45,0:0,0,11,4
chr1	55282556	.	A	G	148.16	PASS	AC=2;AF=0.711;AN=2;DP=1414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1372,120,0:0,0,28,12
chr1	55308039	.	T	G	52.74	PASS	AC=2;AF=0.864;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant15-variant22-variant24-variant25-variant26-variant28-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:254,24,0:0,0,2,6
chr1	55315351	.	T	C	788.67	PASS	AC=2;AF=1;AN=2;DP=1277;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1490,123,0:0,0,33,8
chr1	55316082	.	A	C	1014.64	PASS	AC=2;AF=1;AN=2;DP=2012;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1755,171,0:0,0,26,31
chr1	55319902	.	A	G	739.66	PASS	AC=2;AF=0.718;AN=2;DP=3432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2796,276,0:0,0,44,48
chr1	55330966	.	T	C	1271.51	PASS	AC=2;AF=1;AN=2;DP=1947;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.675;ReadPosRankSum=1.321;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2013,186,0:0,0,41,21
chr1	55336950	.	C	G	121.67	PASS	AC=2;AF=0.675;AN=2;DP=989;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:876,75,0:0,0,20,5
chr1	55341106	.	C	T	100.16	PASS	AC=1;AF=0.647;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:297,0,175:1,5,4,8
chr1	55341915	.	T	G	296.06	PASS	AC=1;AF=0.647;AN=2;DP=604;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:497,0,106:2,4,3,12
chr1	55446373	.	C	A	143.17	PASS	AC=2;AF=0.857;AN=2;DP=370;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:41:333,41,0:0,0,8,6
chr1	55446664	.	G	C	3707.51	PASS	AC=2;AF=0.821;AN=2;DP=4442;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:4811,328,0:0,0,65,40
chr1	55446671	.	C	T	3850.44	PASS	AC=2;AF=0.821;AN=2;DP=4762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:4933,340,0:0,0,67,44
chr1	55446697	.	G	A	4037.04	PASS	AC=2;AF=0.821;AN=2;DP=6210;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4546,450,0:0,0,98,54
chr1	55457710	.	G	A	4007.12	PASS	AC=2;AF=0.854;AN=2;DP=5467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4575,434,0:0,0,68,77
chr1	55457815	.	C	T	1776.9	PASS	AC=2;AF=0.854;AN=2;DP=3964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3810,369,0:0,0,53,70
chr1	55464743	.	T	C	2312.39	PASS	AC=2;AF=0.78;AN=2;DP=3940;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3519,323,0:0,0,75,33
chr1	55464790	.	C	G	3781.15	PASS	AC=2;AF=0.78;AN=2;DP=5876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5434,515,0:0,0,105,67
chr1	55505732	.	A	G	4357.89	PASS	AC=2;AF=0.955;AN=2;DP=5856;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4456,417,0:0,0,50,89
chr1	55516781	.	G	T	2367.12	PASS	AC=2;AF=1;AN=2;DP=4447;FS=0;MQ=60;MQRankSum=-0.17;ReadPosRankSum=0.374;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3247,333,0:0,0,63,48
chr1	55517861	.	C	G	729.13	PASS	AC=2;AF=0.647;AN=2;DP=1983;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1920,177,0:0,0,37,22
chr1	55517883	.	C	G	774.29	PASS	AC=2;AF=0.586;AN=2;DP=2225;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2640,249,0:0,0,51,32
chr1	55518166	.	G	A	280.12	PASS	AC=2;AF=0.659;AN=2;DP=2342;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2506,230,0:0,0,46,31
chr1	55518190	.	AC	A,ACC	1031.66	PASS	AC=2,0;AF=0.722,0.042;AN=2;DP=2375;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:83:99:0,0,51,32
chr1	55518528	.	C	A	322.46	PASS	AC=2;AF=0.738;AN=2;DP=2619;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3067,296,0:0,0,33,66
chr1	55523033	.	A	G	1968.13	PASS	AC=2;AF=1;AN=2;DP=4295;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3450,339,0:0,0,53,60
chr1	55523984	.	C	T	88.67	PASS	AC=2;AF=0.92;AN=2;DP=513;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:564,45,0:0,0,6,9
chr1	55524116	.	C	T	254.14	PASS	AC=2;AF=0.92;AN=2;DP=1316;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:832,81,0:0,0,15,12
chr1	55524197	.	A	G	258.28	PASS	AC=2;AF=0.92;AN=2;DP=1434;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1119,114,0:0,0,16,22
chr1	55524237	.	G	A	319.44	PASS	AC=2;AF=0.92;AN=2;DP=1228;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:978,96,0:0,0,12,20
chr1	55525400	.	G	A	707.07	PASS	AC=2;AF=0.805;AN=2;DP=1456;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,38:39:70:1108,70,0:1,0,16,22
chr1	55527323	.	G	A	1814.01	PASS	AC=2;AF=0.805;AN=2;DP=2334;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2126,200,0:0,0,25,42
chr1	55527479	.	A	G	251.71	PASS	AC=2;AF=0.92;AN=2;DP=393;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:345,30,0:0,0,3,7
chr1	55529187	.	G	A	1395.39	PASS	AC=2;AF=0.932;AN=2;DP=5564;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4595,430,0:0,0,68,76
chr1	55529828	.	C	T	1961.29	PASS	AC=2;AF=0.845;AN=2;DP=3177;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3072,290,0:0,0,48,49
chr1	55530627	.	T	G	4850.47	PASS	AC=2;AF=1;AN=2;DP=4441;FS=0;MQ=60;MQRankSum=0.369;ReadPosRankSum=0.54;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3902,355,0:0,1,43,78
chr1	55532742	.	G	C	1096.79	PASS	AC=2;AF=0.886;AN=2;DP=3270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2733,231,0:0,0,26,51
chr1	55538385	.	T	C	644.36	PASS	AC=2;AF=0.932;AN=2;DP=1719;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2022,168,0:0,0,38,18
chr1	55541174	.	A	G	2345.44	PASS	AC=2;AF=0.857;AN=2;DP=3409;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2571,252,0:0,0,37,47
chr1	55541335	.	ACAACACCACCAC	AAACACCACCAC,A	128.41	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=118;MQ=60;set=variant7-variant13-variant15-variant21-variant24-variant28-variant39-variant41	GT:DP:GQ:SB	0/1:12:99:1,6,2,3
chr1	55541337	.	AACACCACCACC	A	128.41	PASS	AC=1;AF=0.5;AN=2;DP=107;MQ=60;set=variant7-variant15-variant21-variant24-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:151,0,261:1,6,2,3
chr1	55541338	.	ACACCACCAC	AACCACCAC,A	536.79	PASS	AC=1,0;AF=0.775,0.088;AN=2;DP=553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:12:99:2,3,1,6
chr1	55541340	.	ACCACCACC	A,AACCACC	121.03	PASS	AC=1,0;AF=0.721,0.081;AN=2;DP=600;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:12:99:2,3,1,6
chr1	55545515	.	C	G	452.25	PASS	AC=2;AF=0.886;AN=2;DP=1008;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1140,99,0:0,0,8,25
chr1	55546895	.	T	C	427.21	PASS	AC=2;AF=0.869;AN=2;DP=525;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:501,39,0:0,0,11,2
chr1	55555285	.	G	A	328.53	PASS	AC=2;AF=0.857;AN=2;DP=811;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:757,66,0:0,0,16,6
chr1	55557859	.	A	ATT	505.4	PASS	AC=2;AF=0.932;AN=2;DP=1239;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1072,75,0:0,0,4,21
chr1	55557864	.	C	T	1096.77	PASS	AC=2;AF=0.857;AN=2;DP=1002;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:66:989,66,0:0,0,3,18
chr1	55558661	.	A	G	370.74	PASS	AC=2;AF=0.875;AN=2;DP=390;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:415,36,0:0,0,3,9
chr1	55560796	.	T	C	227.17	PASS	AC=2;AF=0.886;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:794,63,0:0,0,18,3
chr1	55562125	.	G	T	108.93	PASS	AC=2;AF=0.951;AN=2;DP=330;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:124,12,0:0,0,3,1
chr1	55566411	.	TTAGTC	T	523.58	PASS	AC=2;AF=0.875;AN=2;DP=765;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:765,51,0:0,0,16,1
chr1	55567143	.	T	C	197.59	PASS	AC=2;AF=0.932;AN=2;DP=718;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1213,96,0:0,0,28,4
chr1	55567410	.	A	G	1208.71	PASS	AC=2;AF=0.932;AN=2;DP=4480;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3834,359,0:0,0,46,74
chr1	55572867	.	G	A	2615.81	PASS	AC=2;AF=0.857;AN=2;DP=3373;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3747,347,0:0,0,79,37
chr1	55575670	.	A	C	362.08	PASS	AC=2;AF=0.882;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:518,39,0:0,0,12,1
chr1	55614036	.	CAT	C	727.87	PASS	AC=2;AF=0.893;AN=2;DP=538;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,11,0
chr1	55619422	.	G	A	148.54	PASS	AC=2;AF=0.895;AN=2;DP=196;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:250,18,0:0,0,6,0
chr1	55638075	.	G	A	923.77	PASS	AC=2;AF=0.932;AN=2;DP=3176;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2461,243,0:0,0,48,33
chr1	55643837	.	TA	T	202.72	PASS	AC=2;AF=0.932;AN=2;DP=1701;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2066,181,0:0,0,11,49
chr1	56961051	.	G	A	1175.47	PASS	AC=2;AF=1;AN=2;DP=2790;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2022,186,0:0,0,25,37
chr1	56961354	.	T	C	1382.1	PASS	AC=1;AF=0.966;AN=2;DP=2715;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:949,0,1241:24,20,21,19
chr1	56961756	.	A	G	485.75	PASS	AC=1;AF=0.743;AN=2;DP=1111;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:315,0,530:13,10,7,6
chr1	57045138	.	G	GCCT	627.33	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=1.157;FractionInformativeReads=0.727;MQ=60;MQRankSum=-1.65;QD=9.5;ReadPosRankSum=-0.458;SOR=0.821;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:665,0,1202:14,16,10,8
chr1	57111169	.	C	G	1756.07	PASS	AC=1;AF=0.617;AN=2;DP=5049;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,92:186:99:2082,0,2337:38,56,41,51
chr1	57158293	.	G	A	241.76	PASS	AC=1;AF=0.63;AN=2;DP=348;MQ=60;set=variant-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant26-variant27-variant29-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:198,0,104:0,3,1,6
chr1	57170229	.	T	C	197.93	PASS	AC=1;AF=0.621;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:383,0,331:3,9,1,10
chr1	57175158	.	A	C	4232.46	PASS	AC=1;AF=0.667;AN=2;DP=10443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:214,183:397:99:4650,0,5903:102,112,94,89
chr1	57177244	.	C	A	8252.09	PASS	AC=1;AF=0.667;AN=2;DP=6672;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant15-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:208,170:378:99:4272,0,5519:116,92,100,70
chr1	57177789	.	G	A	4262.62	PASS	AC=1;AF=0.652;AN=2;DP=10917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:189,238:427:99:6154,0,4665:93,96,116,122
chr1	57178308	.	C	T	378.39	PASS	AC=1;AF=0.667;AN=2;DP=315;FractionInformativeReads=1;set=variant2-variant3-variant9-variant10-variant11-variant14-variant15-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:361,0,162:1,5,2,8
chr1	57180699	.	GA	G	1841.58	PASS	AC=1;AF=0.519;AN=2;DP=3193;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,75:137:99:1827,0,1382:40,22,41,34
chr1	57180747	.	C	T	2000.61	PASS	AC=1;AF=0.5;AN=2;DP=1265;MQ=60;set=variant10-variant11-variant14-variant15-variant19-variant29-variant32-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:95,68:163:99:1717,0,2518:54,41,41,27
chr1	57180867	.	A	G	6439.51	PASS	AC=1;AF=0.721;AN=2;DP=7202;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,130:259:99:3492,0,3166:67,62,73,57
chr1	57184436	.	A	G	388.43	PASS	AC=1;AF=0.5;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant14-variant15-variant19-variant28-variant29-variant32-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,11:34:99:231,0,594:15,8,6,5
chr1	57184465	.	T	G	1424.56	PASS	AC=2;AF=0.833;AN=2;DP=1989;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1360,135,0:0,0,25,20
chr1	57185340	.	T	C	2019.27	PASS	AC=1;AF=0.5;AN=2;DP=1689;MQ=60;set=variant10-variant11-variant14-variant15-variant19-variant28-variant29-variant32-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:107,96:203:99:2376,0,2656:45,62,37,59
chr1	57185818	.	A	G	3411.71	PASS	AC=2;AF=0.857;AN=2;DP=3747;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3840,348,0:0,0,71,45
chr1	57202872	.	A	T	491.2	PASS	AC=1;AF=0.5;AN=2;DP=450;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant14-variant15-variant17-variant21-variant24-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:598,0,554:3,14,2,15
chr1	57216949	.	T	C	835.37	PASS	AC=1;AF=0.5;AN=2;DP=566;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant14-variant15-variant17-variant21-variant24-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:668,0,516:6,13,6,17
chr1	57219377	.	C	G	1280.72	PASS	AC=1;AF=0.5;AN=2;DP=1335;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant14-variant15-variant17-variant21-variant24-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,48:104:99:1175,0,1518:39,17,29,19
chr1	57219539	.	C	A	1072.56	PASS	AC=1;AF=0.5;AN=2;DP=206;FractionInformativeReads=1;MQ=60;set=variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:55,73:128:99:1847,0,1265:21,34,25,48
chr1	57219631	.	G	GA	355.57	PASS	AC=1;AF=0.7;AN=2;DP=613;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:168,0,199:1,7,2,5
chr1	57221553	.	G	T	3909.68	PASS	AC=1;AF=0.694;AN=2;DP=2646;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,48:92:99:1841,0,2104:26,18,27,21
chr1	57221554	.	A	G	3909.68	PASS	AC=1;AF=0.694;AN=2;DP=2660;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1841,0,2104:26,18,27,22
chr1	57224460	.	G	C	2933.88	PASS	AC=1;AF=0.681;AN=2;DP=3568;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,60:109:99:1426,0,1057:27,22,30,30
chr1	57340475	.	A	T	126.11	PASS	AC=1;AF=0.5;AN=2;DP=96;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant11-variant12-variant15-variant18-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:183,0,308:7,1,5,0
chr1	57340727	.	C	A	756.82	PASS	AC=1;AF=0.614;AN=2;DP=1992;MQ=60;set=variant-variant3-variant6-variant7-variant15-variant19-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1150,0,1174:22,26,19,28
chr1	57372591	.	C	T	1290.88	PASS	AC=2;AF=0.792;AN=2;DP=1739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1510,129,0:0,0,13,30
chr1	57373500	.	GAGA	G	620.64	PASS	AC=1;AF=0.591;AN=2;DP=555;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant27-variant29-variant30-variant32-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:417,0,670:13,2,11,0
chr1	57383358	.	C	T	240.13	PASS	AC=1;AF=0.5;AN=2;DP=535;MQ=60;set=variant-variant11-variant12-variant15-variant18-variant23-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:46,34:80:99:835,0,1236:19,27,19,15
chr1	57395020	.	A	G	212.52	PASS	AC=1;AF=0.579;AN=2;DP=551;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant14-variant15-variant19-variant20-variant22-variant26-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:428,0,376:6,7,9,11
chr1	57395251	.	T	C	3207.21	PASS	AC=2;AF=0.875;AN=2;DP=4262;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3929,395,0:0,0,64,68
chr1	57395421	.	C	G	79.38	PASS	AC=1;AF=0.579;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant14-variant15-variant19-variant20-variant22-variant26-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:210,0,351:3,8,3,4
chr1	57397301	.	G	A	319.81	PASS	AC=1;AF=0.579;AN=2;DP=616;MQ=60;set=variant-variant3-variant5-variant6-variant14-variant15-variant19-variant20-variant22-variant26-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:289,0,545:14,4,8,5
chr1	57406392	.	T	C	467.92	PASS	AC=1;AF=0.671;AN=2;DP=1137;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,17:44:99:416,0,674:17,10,10,7
chr1	57417633	.	G	GGGATGTGTCCAAGGTCACACA	763.33	PASS	AC=1;AF=0.757;AN=2;DP=401;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:264,0,1785:8,2,5,1
chr1	57422484	.	C	T	6742.71	PASS	AC=2;AF=0.932;AN=2;DP=9498;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:7126,716,0:0,0,107,132
chr1	57460685	.	C	T	3131.6	PASS	AC=1;AF=0.5;AN=2;DP=3550;MQ=60;set=variant7-variant12-variant15-variant16-variant18-variant22-variant29-variant31-variant33-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,145:324:99:3391,0,4527:85,94,72,73
chr1	57498844	.	T	TAC,TACAC,TACACAC	539.35	PASS	AC=1,1,0;AF=0.029,0.618,0.029;AN=2;DP=460;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/2:19:75:0,0,15,4
chr1	57528772	.	A	G	309.11	PASS	AC=2;AF=0.898;AN=2;DP=1352;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1312,126,0:0,0,13,29
chr1	57537062	.	G	A	339.13	PASS	AC=2;AF=0.625;AN=2;DP=583;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant22-variant25-variant27-variant29-variant30-variant31-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:899,75,0:0,0,20,5
chr1	58939335	.	C	T	354.65	PASS	AC=2;AF=1;AN=2;DP=424;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:168,15,0:0,0,4,1
chr1	59004979	.	C	T	3756.04	PASS	AC=2;AF=1;AN=2;DP=5386;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3523,374,0:0,0,56,69
chr1	59012404	.	A	C	3266.3	PASS	AC=2;AF=0.829;AN=2;DP=5296;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4276,457,0:0,0,76,77
chr1	59012431	.	C	T	2823.41	PASS	AC=2;AF=0.829;AN=2;DP=5172;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:3832,415,0:0,0,68,72
chr1	59120399	.	T	G	259.35	PASS	AC=2;AF=0.721;AN=2;DP=703;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1272,111,0:0,0,28,9
chr1	59120579	.	G	A	828.29	PASS	AC=2;AF=0.905;AN=2;DP=3178;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3238,300,0:0,0,52,48
chr1	59120650	.	C	T	729.44	PASS	AC=2;AF=0.905;AN=2;DP=3805;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4353,399,0:0,0,74,59
chr1	59120990	.	AT	A	2841.68	PASS	AC=2;AF=0.905;AN=2;DP=11717;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,272:272:99:8394,818,0:0,0,149,123
chr1	59121036	.	A	C	2816.21	PASS	AC=2;AF=0.625;AN=2;DP=8448;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,315:315:99:9140,942,0:0,0,155,160
chr1	59122871	.	C	T	2293.81	PASS	AC=2;AF=0.714;AN=2;DP=5103;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,171:172:99:5251,488,0:0,1,82,89
chr1	59122910	.	G	GA,GAA	1446.39	PASS	AC=2,0;AF=0.881,0.012;AN=2;DP=5407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:110:99:2,4,47,57
chr1	59123995	.	A	G	2436.34	PASS	AC=2;AF=0.625;AN=2;DP=4528;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5556,536,0:0,0,79,100
chr1	59124223	.	G	A	3057.83	PASS	AC=2;AF=0.625;AN=2;DP=5737;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6753,641,0:0,0,101,113
chr1	59124373	.	GA	G	1150.59	PASS	AC=2;AF=0.625;AN=2;DP=2827;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:4084,346,0:0,0,51,64
chr1	59124546	.	A	G	1741.88	PASS	AC=2;AF=0.714;AN=2;DP=3854;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3692,329,0:0,0,58,52
chr1	59124630	.	AACAC	A,AACACACACACACAC,AACACACACACACACAC,AACACACACACAC,AACACACACAC,AACACACACACACACACAC,AACACACACACACACACACAC,AAC	3716.07	PASS	AC=0,0,1,1,0,0,0,0;AF=0.125,0.295,0.352,0.114,0.023,0.057,0.011,0.011;AN=2;DP=3883;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/3:59:99:1,0,35,23
chr1	59124791	.	CT	C	5695.41	PASS	AC=2;AF=0.625;AN=2;DP=7784;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,320:320:99:14560,981,0:0,0,165,155
chr1	59124803	.	C	T	5764.57	PASS	AC=2;AF=0.714;AN=2;DP=9638;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,335:335:99:14856,1014,0:0,0,170,165
chr1	59125319	.	C	T	4032.84	PASS	AC=2;AF=0.625;AN=2;DP=9449;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,376:377:99:11662,1120,0:1,0,158,218
chr1	59125515	.	C	T	938.68	PASS	AC=2;AF=0.625;AN=2;DP=2364;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3141,300,0:0,0,50,50
chr1	59125894	.	A	G	355.96	PASS	AC=2;AF=0.625;AN=2;DP=488;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,2,10
chr1	59125899	.	G	A	325.61	PASS	AC=2;AF=0.625;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,2,10
chr1	59126676	.	A	C	37.49	PASS	AC=2;AF=0.915;AN=2;DP=542;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:393,27,0:0,0,9,0
chr1	59127024	.	T	G	1773.97	PASS	AC=2;AF=0.625;AN=2;DP=2836;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3261,318,0:0,0,59,47
chr1	59131311	.	G	T	975.44	PASS	AC=2;AF=0.905;AN=2;DP=2881;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3022,286,0:0,0,31,65
chr1	59134586	.	G	C,A	1581.73	PASS	AC=2,0;AF=0.607,0.018;AN=2;DP=2984;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	1/1:126:99:0,0,60,66
chr1	59134607	.	C	CAG,CA	5443.28	PASS	AC=2,0;AF=0.989,0.011;AN=2;DP=4688;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=1.538;set=Intersection	GT:DP:GQ:SB	1/1:124:99:0,0,61,63
chr1	59137783	.	A	G	502.75	PASS	AC=2;AF=0.721;AN=2;DP=752;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1538,123,0:0,0,7,34
chr1	59139223	.	C	G	1060.92	PASS	AC=2;AF=0.714;AN=2;DP=3019;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3246,312,0:0,0,66,38
chr1	59142713	.	T	C	1606.56	PASS	AC=2;AF=0.714;AN=2;DP=4006;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3652,368,0:0,0,48,75
chr1	59147420	.	G	A	365.29	PASS	AC=2;AF=0.721;AN=2;DP=844;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:785,69,0:0,0,17,6
chr1	59147926	.	T	C	1272.13	PASS	AC=2;AF=0.714;AN=2;DP=2705;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3019,285,0:0,0,52,43
chr1	59150941	.	G	A	442.12	PASS	AC=2;AF=0.905;AN=2;DP=1534;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:593,62,0:0,0,11,10
chr1	59150997	.	TA	T	48.61	PASS	AC=2;AF=0.786;AN=2;DP=437;MQ=60;set=variant-variant3-variant5-variant6-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:133,15,0:0,0,0,5
chr1	59156155	.	C	T	397.55	PASS	AC=2;AF=0.714;AN=2;DP=1115;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1181,117,0:0,0,15,24
chr1	59158632	.	T	C	904.75	PASS	AC=2;AF=0.714;AN=2;DP=1697;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2340,221,0:0,0,24,50
chr1	59160724	.	TA	T	74.38	PASS	AC=2;AF=0.712;AN=2;DP=580;MQ=60;set=variant-variant2-variant3-filterInvariant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:560,63,0:0,0,16,5
chr1	59165838	.	T	G	844.68	PASS	AC=2;AF=0.621;AN=2;DP=1944;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2155,200,0:0,0,19,48
chr1	59247313	.	T	C	31.99	PASS	AC=1;AF=0.5;AN=2;DP=535;MQ=60;set=filterInvariant5-filterInvariant7-filterInvariant10-filterInvariant15-variant18-filterInvariant20-filterInvariant22-filterInvariant24-filterInvariant29-filterInvariant35-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,10:52:93:93,0,1612:10,32,10,0
chr1	59247317	.	CAA	C	63.54	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:41,10:51:96:96,0,1600:8,33,10,0
chr1	59247400	.	T	C	94.86	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=231;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:70,15:85:84:84,0,1475:25,45,15,0
chr1	59248813	.	G	C	4705.36	PASS	AC=2;AF=1;AN=2;DP=6786;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:5198,456,0:0,0,45,107
chr1	59249031	.	T	G	2145.5	PASS	AC=2;AF=1;AN=2;DP=3077;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2284,218,0:0,0,35,38
chr1	59249347	.	G	C	2252.33	PASS	AC=2;AF=1;AN=2;DP=4282;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3397,330,0:0,0,60,50
chr1	60019853	.	C	T	1209.6	PASS	AC=1;AF=0.5;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant21-variant37	GT:AD:DP:GQ:PL:SB	0/1:67,57:124:99:1256,0,1681:28,39,25,32
chr1	60199133	.	G	GTTTT	291.73	PASS	AC=1;AF=0.62;AN=2;DP=393;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:99:147,0,104:0,2,1,3
chr1	60223460	.	A	G	548.8	PASS	AC=1;AF=0.55;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant13-variant15-variant18-variant20-variant24-variant25-variant26-variant28-variant30-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:515,0,941:23,8,15,3
chr1	60228310	.	T	TTC	1947.29	PASS	AC=2;AF=0.795;AN=2;DP=6509;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:8879,606,0:0,0,115,85
chr1	60280749	.	GT	G	12087.5	PASS	AC=2;AF=1;AN=2;DP=15049;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,426:426:99:17060,1282,0:0,0,220,206
chr1	60299820	.	C	G,A	2042.14	PASS	AC=2,0;AF=0.898,0.023;AN=2;DP=3655;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:125:99:0,0,63,62
chr1	60373775	.	T	C	511.77	PASS	AC=1;AF=0.657;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:260,0,188:2,5,2,7
chr1	60466814	.	T	C	791.79	PASS	AC=2;AF=0.707;AN=2;DP=1753;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2069,191,0:0,0,39,25
chr1	60466911	.	ACAG	A	925.35	PASS	AC=2;AF=0.726;AN=2;DP=3845;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:4709,322,0:0,0,53,54
chr1	60475930	.	C	G	363.78	PASS	AC=2;AF=0.779;AN=2;DP=2666;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2304,213,0:0,0,47,24
chr1	60505578	.	A	G	480.75	PASS	AC=2;AF=0.909;AN=2;DP=992;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1235,111,0:0,0,26,11
chr1	60506762	.	G	A	1168.07	PASS	AC=1;AF=0.5;AN=2;DP=420;MQ=60;set=variant15-variant20-variant25-variant33-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:42,46:88:99:1196,0,1193:15,27,19,27
chr1	61542892	.	A	G	254.14	PASS	AC=2;AF=1;AN=2;DP=1193;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:965,81,0:0,0,17,10
chr1	61743160	.	G	A	3298.98	PASS	AC=1;AF=0.576;AN=2;DP=4028;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,57:131:99:1377,0,1974:37,37,30,27
chr1	61818422	.	A	G	384.2	PASS	AC=2;AF=0.878;AN=2;DP=510;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:912,69,0:0,0,6,17
chr1	61818428	.	TACACACAC	T,TACACACACACAC,TACACAC,TACACACACAC,TACACACACACACAC,TACAC	375.77	PASS	AC=1,0,1,0,0,0;AF=0.056,0.236,0.306,0.292,0.014,0.014;AN=2;DP=398;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:17:99:0,0,3,14
chr1	61872541	.	G	A	621.72	PASS	AC=1;AF=0.577;AN=2;DP=564;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant10-variant11-variant15-variant26-variant28-variant33-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:838,0,790:3,21,6,22
chr1	61892301	.	T	TG	3478.93	PASS	AC=2;AF=1;AN=2;DP=4530;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:4033,330,0:0,0,53,56
chr1	61921185	.	AT	ATT,A	3119.62	PASS	AC=1,0;AF=0.5,0.012;AN=2;DP=7615;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:214:99:14,15,92,93
chr1	61922046	.	T	TA,TAA	1569.72	PASS	AC=2,0;AF=0.7,0.038;AN=2;DP=2977;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:78:99:3,1,40,34
chr1	61927876	.	G	A	545.49	PASS	AC=2;AF=0.821;AN=2;DP=2011;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1710,170,0:0,0,35,22
chr1	62148927	.	G	A	70.68	PASS	AC=2;AF=0.909;AN=2;DP=55;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant11-variant15-variant20-variant25-variant26-variant27-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:86,9,0:0,0,2,1
chr1	62160542	.	A	G	406.49	PASS	AC=2;AF=0.929;AN=2;DP=453;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:375,33,0:0,0,3,8
chr1	62208273	.	T	G	790.96	PASS	AC=2;AF=1;AN=2;DP=2126;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1281,130,0:0,0,18,26
chr1	62208337	.	G	A	312.4	PASS	AC=1;AF=0.756;AN=2;DP=900;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:433,0,272:5,8,6,12
chr1	62231924	.	T	TTGA	403.5	PASS	AC=1;AF=0.671;AN=2;DP=632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:301,0,279:5,1,6,2
chr1	62232031	.	C	T	2978.92	PASS	AC=2;AF=0.943;AN=2;DP=3967;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2553,250,0:0,0,53,31
chr1	62232130	.	T	C	912.1	PASS	AC=1;AF=0.5;AN=2;DP=1129;MQ=60;set=variant2-variant4-variant8-variant12-variant14-variant15-variant17-variant21-variant24-variant28-variant33-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,49:94:99:1135,0,1023:21,24,20,29
chr1	62257036	.	A	C	884.03	PASS	AC=1;AF=0.545;AN=2;DP=1026;MQ=60;set=variant-variant4-variant7-variant10-variant11-variant13-variant15-variant20-variant21-variant23-variant35	GT:AD:DP:GQ:PL:SB	0/1:48,62:110:99:1431,0,1003:22,26,31,31
chr1	62329885	.	AT	A	95.59	PASS	AC=1;AF=0.609;AN=2;DP=468;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant22-variant23-variant27-variant32-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:333,0,519:14,6,11,3
chr1	62330080	.	T	G	2878.81	PASS	AC=2;AF=1;AN=2;DP=4416;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3595,315,0:0,0,56,49
chr1	62340855	.	G	C	569.01	PASS	AC=1;AF=0.596;AN=2;DP=819;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:522,0,580:15,3,15,4
chr1	62341157	.	T	C	570.04	PASS	AC=2;AF=0.805;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:465,36,0:0,0,1,11
chr1	62350123	.	GTTTTTT	G,GT,GTTT,GTT,GTTTT	1230.72	PASS	AC=0,2,0,0,0;AF=0.256,0.436,0.077,0.051,0.051;AN=2;DP=2005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:37:61:1,1,6,29
chr1	62365217	.	C	T	1300.29	PASS	AC=2;AF=0.711;AN=2;DP=1904;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1642,168,0:0,0,35,21
chr1	62365461	.	G	A	1021.6	PASS	AC=1;AF=0.567;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant9-variant12-variant15-variant16-variant20-variant21-variant26-variant27-variant30-variant32-variant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:348,0,212:1,6,3,9
chr1	62374267	.	T	C	361.25	PASS	AC=2;AF=0.769;AN=2;DP=411;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:478,33,0:0,0,0,11
chr1	62380158	.	T	A	717	PASS	AC=1;AF=0.5;AN=2;DP=492;MQ=60;set=variant13-variant15-variant24-variant27-variant33-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:924,0,1114:25,18,26,9
chr1	62380195	.	A	G	3375	PASS	AC=2;AF=0.55;AN=2;DP=989;FractionInformativeReads=1;set=variant15-variant16-variant18-variant20-variant24-variant27-variant33-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3403,347,0:0,0,67,49
chr1	62380223	.	G	T	1971.18	PASS	AC=1;AF=0.583;AN=2;DP=2218;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant18-variant23-variant24-variant29-variant33-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,69:133:99:1677,0,1446:33,31,38,31
chr1	62380270	.	C	T	3038.52	PASS	AC=2;AF=0.78;AN=2;DP=5107;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3831,391,0:0,0,60,71
chr1	62380298	.	G	A	2452.33	PASS	AC=2;AF=0.667;AN=2;DP=4112;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3680,356,0:0,0,48,71
chr1	62393394	.	A	G	4608.49	PASS	AC=2;AF=0.869;AN=2;DP=6478;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5446,564,0:0,0,106,83
chr1	62417951	.	A	AG	508.43	PASS	AC=2;AF=0.857;AN=2;DP=1862;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,25:26:68:1050,68,0:1,0,22,3
chr1	62417952	.	A	AGAGAGAG,AG,AGAGAGAGAG,AGAGAGAGAGAGAG,AGAGAGAGAGAGAGAGAGAG,AGAGAG,AGAGAGAGAGAGAGAGAG,AGAGAGAGAGAG	476.85	PASS	AC=0,1,0,0,0,1,0,0;AF=0.155,0.226,0.333,0.071,0.012,0.012,0.036,0.024;AN=2;DP=1865;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/6:25:99:1,0,21,3
chr1	62483657	.	C	T	1552.24	PASS	AC=1;AF=0.5;AN=2;DP=1641;MQ=60;set=variant3-variant7-variant10-variant15-variant17-variant20-variant24-variant27-variant28-variant32-variant33-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,61:142:99:1549,0,2027:31,50,21,40
chr1	62516683	.	G	C	2314.36	PASS	AC=2;AF=0.7;AN=2;DP=7336;set=variant-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,275:275:99:8355,823,0:0,0,126,149
chr1	62579523	.	C	T	250.68	PASS	AC=2;AF=0.811;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:361,27,0:0,0,8,1
chr1	62579672	.	A	C	1003.74	PASS	AC=2;AF=0.829;AN=2;DP=1746;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1519,147,0:0,0,26,23
chr1	62579823	.	G	A	930.69	PASS	AC=2;AF=0.795;AN=2;DP=3625;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2505,254,0:0,0,42,43
chr1	62587014	.	T	TA,TAAA,TAAAA,TAA	1025.01	PASS	AC=2,0,0,0;AF=0.659,0.098,0.049,0.024;AN=2;DP=2811;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:66:99:0,0,20,46
chr1	62593893	.	T	C	118.67	PASS	AC=1;AF=0.73;AN=2;DP=547;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:275,0,197:0,6,1,7
chr1	62594593	.	C	T	1330.63	PASS	AC=1;AF=0.703;AN=2;DP=4126;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,48:115:99:1056,0,1662:35,32,25,23
chr1	62614164	.	G	A	783.07	PASS	AC=1;AF=0.5;AN=2;DP=618;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant10-variant15-variant19-variant20-variant24-variant27-variant28-variant33-variant34-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:849,0,669:7,17,13,18
chr1	62627675	.	G	A	4985.31	PASS	AC=1;AF=0.718;AN=2;DP=14032;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:210,200:410:99:5160,0,5415:106,104,104,96
chr1	62644118	.	A	G	604.98	PASS	AC=2;AF=0.744;AN=2;DP=1602;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1442,120,0:0,0,7,33
chr1	62644172	.	A	G	227.35	PASS	AC=1;AF=0.553;AN=2;DP=279;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant24-variant27-variant28-variant29-variant33-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:382,0,352:0,10,1,9
chr1	62672546	.	G	A	2617.26	PASS	AC=1;AF=0.886;AN=2;DP=2267;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:610,0,670:13,10,9,14
chr1	62702637	.	C	T	111.22	PASS	AC=1;AF=0.988;AN=2;DP=368;FractionInformativeReads=1;MQ=60;MQRankSum=-1.733;ReadPosRankSum=-0.533;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:282,0,103:3,2,7,2
chr1	62702803	.	CTTTT	CTTT,CTTTTT,C,CTTTTTT	120.91	PASS	AC=1,0,0,0;AF=0.357,0.107,0.071,0.036;AN=2;DP=268;set=variant3-variant6-variant10-variant12-variant15-variant16-variant17-variant21-variant26-variant31-variant33-variant35-variant36-variant40	GT:DP:GQ:SB	0/1:19:47:3,2,7,7
chr1	62703064	.	C	T	814.72	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.842;FractionInformativeReads=1;MQ=60;MQRankSum=0.133;QD=10.31;ReadPosRankSum=0.528;SOR=0.599;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:843,0,1208:24,20,17,18
chr1	62703141	.	A	G	927.46	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.192;QD=10.91;ReadPosRankSum=-1.813;SOR=0.77;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:48,37:85:99:956,0,1223:23,25,17,20
chr1	62704181	.	G	A	526.43	PASS	AC=1;AF=0.5;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant27-variant29-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:555,0,833:9,20,11,16
chr1	62712999	.	TG	T	223.97	PASS	AC=1;AF=0.659;AN=2;DP=178;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant13-variant15-variant17-variant21-variant22-variant24-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:105,0,106:4,0,2,2
chr1	62713224	.	C	G	1518.47	PASS	AC=1;AF=0.989;AN=2;DP=3844;MQ=60;MQRankSum=0.136;ReadPosRankSum=0.716;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1215,0,1175:27,15,29,14
chr1	62728596	.	T	C	106.77	PASS	AC=1;AF=0.8;AN=2;DP=236;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:92:92,0,154:4,0,3,0
chr1	62728784	.	A	G	1536.89	PASS	AC=1;AF=0.756;AN=2;DP=3133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,44:96:99:1022,0,1280:29,23,24,20
chr1	62728838	.	T	C	2129.46	PASS	AC=1;AF=0.756;AN=2;DP=3674;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1988,0,1860:28,21,29,26
chr1	62728861	.	T	C	2214.23	PASS	AC=1;AF=0.756;AN=2;DP=3938;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,51:101:99:1923,0,1903:29,21,28,23
chr1	62728918	.	G	A	1859.59	PASS	AC=1;AF=0.756;AN=2;DP=4721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,53:122:99:1234,0,1569:36,33,28,25
chr1	62729015	.	G	A	1826.1	PASS	AC=1;AF=0.756;AN=2;DP=4455;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,49:115:99:1240,0,1718:26,40,23,26
chr1	62939634	.	C	T	1211.19	PASS	AC=2;AF=1;AN=2;DP=2085;FS=0;MQ=60;MQRankSum=1.256;ReadPosRankSum=0.173;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1493,161,0:0,0,25,29
chr1	62943264	.	C	T	2673.67	PASS	AC=2;AF=1;AN=2;DP=2721;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2471,234,0:0,0,53,25
chr1	62945418	.	A	G	62.98	PASS	AC=2;AF=0.824;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:177,18,0:0,0,3,3
chr1	62953183	.	C	T	568.13	PASS	AC=2;AF=1;AN=2;DP=885;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:793,63,0:0,0,4,17
chr1	62960250	.	T	C	131.36	PASS	AC=2;AF=0.814;AN=2;DP=461;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:933,81,0:0,0,7,20
chr1	62961928	.	T	C	409.95	PASS	AC=2;AF=1;AN=2;DP=457;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:539,42,0:0,0,12,2
chr1	62970184	.	T	C	102.99	PASS	AC=2;AF=0.838;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:207,15,0:0,0,5,0
chr1	62973795	.	A	G	424.06	PASS	AC=2;AF=0.797;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:497,39,0:0,0,2,11
chr1	62976472	.	T	G	490.19	PASS	AC=2;AF=1;AN=2;DP=730;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:879,60,0:0,0,1,19
chr1	63001120	.	A	C	778.38	PASS	AC=2;AF=0.789;AN=2;DP=2836;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2181,223,0:0,0,47,28
chr1	63027411	.	AG	A	2179.42	PASS	AC=2;AF=1;AN=2;DP=1829;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1899,142,0:0,0,17,30
chr1	63044645	.	CA	C,CAA	309.83	PASS	AC=0,1;AF=0.4,0.1;AN=2;DP=1166;MQ=60;set=variant3-filterInvariant4-variant9-variant10-filterInvariant12-variant15-filterInvariant16-variant17-filterInvariant19-variant20-variant21-filterInvariant23-filterInvariant25-variant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant37-variant39-variant40-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/2:37:99:5,10,9,13
chr1	63068210	.	T	C	466.17	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:494,0,502:1,13,2,13
chr1	63113511	.	C	A	318.52	PASS	AC=2;AF=0.789;AN=2;DP=2138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2101,198,0:0,0,21,45
chr1	63113689	.	T	C	233.09	PASS	AC=2;AF=1;AN=2;DP=368;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:635,51,0:0,0,9,8
chr1	63113719	.	T	C	246.42	PASS	AC=2;AF=0.797;AN=2;DP=541;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:665,54,0:0,0,10,8
chr1	63282526	.	C	T	860.53	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=2.448;FractionInformativeReads=1;MQ=60;MQRankSum=-1.255;QD=14.59;ReadPosRankSum=-0.053;SOR=1.143;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:889,0,640:9,18,8,24
chr1	63300855	.	TA	TAA,TAAA,T	85.79	PASS	AC=0,0,1;AF=0.5,0.05,0.05;AN=2;DP=169;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant15-variant31-variant33-variant41-variant44	GT:DP:GQ:SB	0/3:19:99:7,5,5,2
chr1	63788951	.	C	A	1626.69	PASS	AC=1;AF=0.533;AN=2;DP=1370;MQ=60;set=variant3-variant8-variant11-variant12-variant15-variant18-variant19-variant26-variant30-variant33-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,58:102:99:1792,0,1217:21,23,23,35
chr1	63833436	.	C	G	934.19	PASS	AC=1;AF=0.5;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant16-variant28-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:299,0,524:8,12,4,8
chr1	63833450	.	G	T	848.14	PASS	AC=1;AF=0.5;AN=2;DP=156;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant16-variant28-variant38	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:230,0,484:8,11,3,7
chr1	63868131	.	AT	A,ATTT	66.27	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=63;set=variant4-variant15-variant16	GT:DP:GQ:SB	0/1:15:69:2,4,1,8
chr1	63920515	.	C	G	378.18	PASS	AC=1;AF=0.529;AN=2;DP=556;MQ=60;set=variant-variant3-variant4-variant8-variant15-variant20-variant25-variant26-variant29-variant30-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:382,0,464:11,6,11,4
chr1	63975830	.	T	C	112.45	PASS	AC=2;AF=1;AN=2;DP=196;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,1,2
chr1	63975859	.	C	CA	47.5	PASS	AC=2;AF=0.75;AN=2;DP=33;MQ=60;set=variant-variant13-variant15-variant33	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:85,9,0:0,0,1,2
chr1	63988904	.	G	A	708.41	PASS	AC=2;AF=0.568;AN=2;DP=1347;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant12-variant13-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2220,229,0:0,0,34,43
chr1	63991140	.	T	C	282.97	PASS	AC=2;AF=1;AN=2;DP=687;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:539,42,0:0,0,12,2
chr1	64017419	.	G	A	702.45	PASS	AC=1;AF=0.5;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:997,0,1151:21,29,24,22
chr1	64095042	.	G	T	1331.81	PASS	AC=1;AF=0.5;AN=2;DP=1475;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant15-variant19-variant22-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,41:111:99:1075,0,1805:42,28,27,14
chr1	64095111	.	A	G	1693.6	PASS	AC=1;AF=0.5;AN=2;DP=2103;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant15-variant22-variant24-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:105,74:179:99:1830,0,2360:56,49,41,33
chr1	64097432	.	C	T	1155.48	PASS	AC=1;AF=0.575;AN=2;DP=2387;MQ=60;set=variant2-variant3-variant7-variant8-variant10-variant13-variant15-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,81:157:99:2063,0,1777:35,41,37,44
chr1	64100478	.	A	T	845.11	PASS	AC=1;AF=0.625;AN=2;DP=2012;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,27:75:99:621,0,1269:31,17,18,9
chr1	64102114	.	A	G	720.07	PASS	AC=1;AF=0.62;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:540,0,660:5,17,3,15
chr1	64114301	.	T	C	1240.81	PASS	AC=1;AF=0.577;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant15-variant24-variant29-variant33-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1157,0,1291:18,31,17,26
chr1	64117537	.	G	T	465.08	PASS	AC=1;AF=0.577;AN=2;DP=786;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant15-variant24-variant29-variant33-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:927,0,913:17,22,15,23
chr1	64474804	.	C	T	223.35	PASS	AC=1;AF=0.795;AN=2;DP=1087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:307,0,261:7,4,9,3
chr1	64515379	.	C	T	1054.04	PASS	AC=2;AF=0.852;AN=2;DP=5028;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4061,392,0:0,0,77,54
chr1	64603231	.	G	A	1583.21	PASS	AC=1;AF=0.55;AN=2;DP=961;MQ=60;set=variant2-variant6-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,48:79:99:1309,0,870:7,24,13,35
chr1	64608329	.	G	T	4896.52	PASS	AC=2;AF=1;AN=2;DP=6544;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:4987,491,0:0,0,80,84
chr1	64608423	.	G	A	2110.44	PASS	AC=1;AF=0.55;AN=2;DP=1842;MQ=60;set=variant2-variant6-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,51:90:99:1290,0,1029:18,21,22,29
chr1	64608563	.	A	G	1278.92	PASS	AC=1;AF=0.55;AN=2;DP=988;MQ=60;set=variant2-variant6-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:749,0,846:14,17,12,15
chr1	64608778	.	A	G	4948.36	PASS	AC=1;AF=0.55;AN=2;DP=3349;MQ=60;set=variant2-variant6-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:122,86:208:99:1950,0,2703:61,61,46,40
chr1	64624612	.	G	A	1684.06	PASS	AC=2;AF=1;AN=2;DP=1797;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1701,140,0:0,0,38,9
chr1	64624842	.	A	G	2895.76	PASS	AC=2;AF=0.597;AN=2;DP=5680;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:7137,672,0:0,0,90,134
chr1	64644707	.	GAAA	GA,GAA,G	556.75	PASS	AC=0,1,0;AF=0.195,0.402,0.024;AN=2;DP=3491;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:65:81:5,11,22,27
chr1	64646624	.	A	G	787.97	PASS	AC=2;AF=0.643;AN=2;DP=1143;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant20-variant25-variant26-variant27-variant29-variant30-variant34-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2064,168,0:0,0,38,18
chr1	64669567	.	A	T	1434.26	PASS	AC=2;AF=0.63;AN=2;DP=2189;MQ=60;set=variant4-variant6-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3387,315,0:0,0,55,50
chr1	64680682	.	C	G	1343.56	PASS	AC=2;AF=0.713;AN=2;DP=1142;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1011,90,0:0,0,8,22
chr1	64698411	.	T	C	873.2	PASS	AC=1;AF=0.596;AN=2;DP=1022;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:640,0,611:5,16,5,18
chr1	64709891	.	A	G	2375.31	PASS	AC=1;AF=0.56;AN=2;DP=8453;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant32-variant33-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:247,163:410:99:3498,0,5574:111,136,69,94
chr1	64726149	.	C	CTCAG	242.08	PASS	AC=1;AF=0.568;AN=2;DP=207;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant25-variant27-variant28-variant32-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:136,0,470:8,0,3,1
chr1	64726384	.	C	T	1348.24	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:36,55:91:99:1376,0,793:13,23,25,30
chr1	64726414	.	A	C	1725.72	PASS	AC=1;AF=0.713;AN=2;DP=2078;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:594,0,1099:14,25,7,17
chr1	65016349	.	A	T	4099.04	PASS	AC=2;AF=0.909;AN=2;DP=6412;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5592,566,0:0,0,97,92
chr1	65045602	.	TA	T	607.22	PASS	AC=1;AF=0.909;AN=2;DP=2978;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,34:74:99:722,0,811:25,15,20,14
chr1	65068638	.	T	C	2624.45	PASS	AC=2;AF=0.989;AN=2;DP=3311;MQ=60;MQRankSum=0.347;ReadPosRankSum=0.962;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2761,263,0:0,0,26,62
chr1	65098163	.	C	G	35.65	PASS	AC=1;AF=0.5;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant20-variant27-variant37	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:157,0,104:3,1,4,1
chr1	65099701	.	GT	GTT,G,GTTT	282.86	PASS	AC=1,0,0;AF=0.342,0.132,0.026;AN=2;DP=690;set=variant7-filterInvariant8-variant10-variant15-variant17-variant18-filterInvariant19-variant20-variant23-filterInvariant25-variant27-variant28-filterInvariant32-filterInvariant33-variant34-variant37-filterInvariant39-variant42-variant44	GT:DP:GQ:SB	0/1:53:99:18,14,14,7
chr1	65099978	.	G	A	1577.56	PASS	AC=2;AF=0.977;AN=2;DP=2195;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2033,209,0:0,0,26,44
chr1	65100061	.	G	T	152.28	PASS	AC=2;AF=0.973;AN=2;DP=340;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:179,12,0:0,0,0,4
chr1	65107372	.	C	T	722.84	PASS	AC=2;AF=1;AN=2;DP=1222;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1242,117,0:0,0,27,12
chr1	65107850	.	T	C	743.47	PASS	AC=2;AF=1;AN=2;DP=892;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.085;ReadPosRankSum=-0.217;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:434,33,0:0,0,3,8
chr1	65113351	.	T	C	498.48	PASS	AC=2;AF=1;AN=2;DP=767;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:887,69,0:0,0,19,4
chr1	65113568	.	T	C	3538.45	PASS	AC=2;AF=1;AN=2;DP=6428;FS=0;MQ=60;MQRankSum=1.35;ReadPosRankSum=1.183;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5479,522,0:0,0,84,90
chr1	65147224	.	GTTTTTTTTTTT	GT,GTTTTTTTTT,GTTTTTTT,G,GTTTTTTTT,GGTTTTTTTTTTTTTTTTTT,GTTTTTTTTTT,GGTTTTTTTTTTTTT	209.9	PASS	AC=1,0,0,0,0,0,0,0;AF=0.217,0.196,0.043,0.043,0.022,0.022,0.043,0.022;AN=2;DP=312;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant24-variant25-filterInvariant26-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:10:99:1,5,0,4
chr1	65158724	.	C	T	10864.3	PASS	AC=2;AF=0.905;AN=2;DP=13252;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,392:392:99:11682,1174,0:0,0,166,226
chr1	65234216	.	AT	A	168.15	PASS	AC=2;AF=0.6;AN=2;DP=123;MQ=60;set=variant7-variant9-variant11-variant12-variant15	GT:AD:DP:GQ:PL:SB	1/1:1,27:28:57:689,57,0:1,0,16,11
chr1	65243281	.	T	C	455.42	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;MQ=60;set=variant11-variant15	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:742,0,933:22,9,22,1
chr1	65255018	.	G	A	1743.72	PASS	AC=2;AF=0.605;AN=2;DP=1037;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2851,242,0:0,0,65,16
chr1	65270549	.	A	G	1823.8	PASS	AC=2;AF=0.667;AN=2;DP=465;MQ=60;set=variant7-variant9-variant11-variant12-variant13-variant15-variant26-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2494,209,0:0,0,35,35
chr1	65280620	.	G	A	982.66	PASS	AC=2;AF=0.583;AN=2;DP=202;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant12-variant15-variant29	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1645,135,0:0,0,10,35
chr1	65297855	.	CTAT	C	20179.8	PASS	AC=2;AF=0.654;AN=2;DP=10868;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,491:495:99:16040,1390,0:3,1,227,264
chr1	65298623	.	AAGTC	A	2823.35	PASS	AC=2;AF=0.654;AN=2;DP=1756;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:3231,217,0:0,0,30,42
chr1	65298774	.	G	GTGTTGTT,GTGTT	3375.95	PASS	AC=0,2;AF=0.321,0.25;AN=2;DP=2675;set=variant2-variant7-variant9-variant11-variant12-variant14-variant15-variant19-variant24-variant32-variant38-variant40-variant43-variant44	GT:DP:GQ:SB	2/2:237:99:0,0,132,105
chr1	65301238	.	A	G	129.52	PASS	AC=2;AF=0.583;AN=2;DP=114;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant12-variant15-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:783,63,0:0,0,4,17
chr1	65302026	.	T	C	301.4	PASS	AC=1;AF=0.5;AN=2;DP=40;FractionInformativeReads=1;MQ=60;set=variant11-variant15	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:363,0,308:3,9,2,10
chr1	65311214	.	G	C	1742.12	PASS	AC=2;AF=0.583;AN=2;DP=703;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant12-variant15-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:3961,403,0:0,0,75,60
chr1	65321250	.	G	A	1075.84	PASS	AC=2;AF=0.583;AN=2;DP=505;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant12-variant15-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2555,254,0:0,0,48,37
chr1	65321388	.	G	A	1812.12	PASS	AC=2;AF=0.6;AN=2;DP=2433;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3472,350,0:0,0,56,61
chr1	65321419	.	G	A	1506.31	PASS	AC=2;AF=0.583;AN=2;DP=621;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant12-variant15-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3094,329,0:0,0,48,62
chr1	65325970	.	C	T	1758.63	PASS	AC=2;AF=0.6;AN=2;DP=2745;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4412,434,0:0,0,55,90
chr1	65326098	.	CATGCATTTATTT	CATTT,C	154.74	PASS	AC=2,0;AF=0.5,0.167;AN=2;DP=50;FS=0;MQ=60;set=variant11-variant15-variant41	GT:DP:GQ:SB	1/1:24:72:0,0,2,22
chr1	65326144	.	T	C	61.77	PASS	AC=2;AF=1;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;SOR=2.303;set=variant11-variant15	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,1,5
chr1	65330682	.	G	A	862.18	PASS	AC=2;AF=0.6;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:596,51,0:0,0,3,14
chr1	65335095	.	T	C	1944.81	PASS	AC=2;AF=0.583;AN=2;DP=855;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant12-variant15-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4256,405,0:0,0,59,76
chr1	65694404	.	GTT	GT,G	5488.65	PASS	AC=1,0;AF=0.643,0.054;AN=2;DP=12038;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:440:99:138,108,100,94
chr1	65694612	.	C	T	1681.83	PASS	AC=1;AF=0.556;AN=2;DP=1107;MQ=60;set=variant4-variant12-variant14-variant15-variant21-variant27-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,83:158:99:2376,0,2071:32,43,37,46
chr1	65694697	.	T	G	1767.51	PASS	AC=1;AF=0.556;AN=2;DP=1493;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant14-variant15-variant21-variant27-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,95:174:99:2412,0,1910:39,40,50,45
chr1	65695054	.	G	A	473.56	PASS	AC=1;AF=0.556;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant14-variant15-variant21-variant27-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,17:25:99:484,0,241:1,7,6,11
chr1	65695853	.	A	G	824.63	PASS	AC=1;AF=0.696;AN=2;DP=2427;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,45:99:99:1073,0,1361:27,27,18,27
chr1	65695930	.	G	A	1229.97	PASS	AC=1;AF=0.696;AN=2;DP=2474;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,55:116:99:1730,0,1718:37,24,33,22
chr1	65696189	.	T	G	5168.42	PASS	AC=1;AF=0.556;AN=2;DP=3985;MQ=60;set=variant4-variant12-variant14-variant15-variant21-variant27-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:253,248:501:99:6004,0,6533:119,134,119,129
chr1	65775187	.	G	C	117.67	PASS	AC=2;AF=1;AN=2;DP=630;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:49:441,49,0:0,0,8,9
chr1	65775330	.	AT	ATT,A	44.67	DRAGENHardINDEL	AC=0,1;AF=0.071,0.429;AN=2;DP=507;MQ=60;set=FilteredInAll	GT:DP:GQ:SB	0/2:86:81:45,28,7,6
chr1	65830297	.	G	T	509.9	PASS	AC=1;AF=0.671;AN=2;DP=903;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,13:16:26:333,0,26:2,1,10,3
chr1	65830299	.	T	G	509.9	PASS	AC=1;AF=0.6;AN=2;DP=963;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,15:18:26:333,0,26:2,1,12,3
chr1	65830608	.	T	C	1135.18	PASS	AC=1;AF=0.738;AN=2;DP=1177;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:470,0,863:4,22,4,13
chr1	65844963	.	A	G	3118.07	PASS	AC=1;AF=0.695;AN=2;DP=3706;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,54:97:99:1395,0,1177:31,12,32,22
chr1	65845042	.	A	T	2290.53	PASS	AC=1;AF=0.5;AN=2;DP=1373;MQ=60;set=variant-variant2-variant9-variant10-variant15-variant23-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:92,78:170:99:1790,0,2211:48,44,41,37
chr1	65845076	.	C	T	2469.82	PASS	AC=1;AF=0.5;AN=2;DP=1473;MQ=60;set=variant-variant2-variant9-variant10-variant15-variant23-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:97,88:185:99:2196,0,2442:49,48,48,40
chr1	65852870	.	A	G	342.51	PASS	AC=1;AF=0.7;AN=2;DP=689;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:419,0,362:5,9,5,11
chr1	65858088	.	T	C	1238.8	PASS	AC=1;AF=0.683;AN=2;DP=2092;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:379,0,741:18,12,11,9
chr1	65858145	.	G	A	1536.71	PASS	AC=1;AF=0.659;AN=2;DP=2934;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:674,0,870:20,16,15,15
chr1	65860687	.	A	C	3426.11	PASS	AC=1;AF=0.72;AN=2;DP=5235;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,55:127:99:1313,0,1821:35,37,22,33
chr1	65867391	.	C	G	1839.87	PASS	AC=1;AF=0.707;AN=2;DP=2812;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:1039,0,1315:28,17,21,15
chr1	65879252	.	A	G	8635.31	PASS	AC=2;AF=0.625;AN=2;DP=7383;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,307:308:99:9164,910,0:0,1,155,152
chr1	65881132	.	AAC	AACACAC,AACACACAC,A,AACAC	1833.54	PASS	AC=1,1,0,0;AF=0.274,0.119,0.071,0.226;AN=2;DP=3478;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:44:99:0,3,16,25
chr1	65886142	.	C	G	192.73	PASS	AC=2;AF=0.792;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant14-variant15-variant16-variant17-variant22-variant26-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:226,18,0:0,0,3,3
chr1	65886211	.	G	C	136.78	PASS	AC=2;AF=0.694;AN=2;DP=120;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant16-variant22-variant26-variant27-variant29-variant32-variant34-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:337,24,0:0,0,7,1
chr1	65886398	.	T	C	5176.2	PASS	AC=2;AF=0.63;AN=2;DP=6260;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,267:267:99:7783,797,0:0,0,150,117
chr1	65886448	.	T	C	5603.2	PASS	AC=2;AF=0.63;AN=2;DP=7472;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,319:319:99:9419,956,0:0,0,157,162
chr1	65887013	.	A	C	3887.73	PASS	AC=2;AF=0.63;AN=2;DP=2869;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3919,395,0:0,0,72,60
chr1	65897981	.	G	A	1049.13	PASS	AC=1;AF=0.604;AN=2;DP=1826;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,41:74:99:1227,0,1030:5,28,11,30
chr1	65898249	.	TAA	TAAA,T,TA	106.44	PASS	AC=0,1,0;AF=0.167,0.372,0.09;AN=2;DP=1901;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:59:99:20,10,19,10
chr1	65898873	.	G	C	899.83	PASS	AC=1;AF=0.604;AN=2;DP=1023;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:644,0,669:8,13,3,17
chr1	65898972	.	G	A	2487.06	PASS	AC=2;AF=1;AN=2;DP=2593;FS=0;MQ=60;MQRankSum=-0.247;ReadPosRankSum=0.46;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2863,239,0:0,0,49,31
chr1	65898996	.	C	T	3057.21	PASS	AC=1;AF=0.579;AN=2;DP=1317;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant12-variant15-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,58:97:99:1823,0,1177:29,10,41,17
chr1	65900357	.	G	T	942.38	PASS	AC=1;AF=0.604;AN=2;DP=1806;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,50:88:99:1333,0,919:13,25,25,25
chr1	65901053	.	T	TC	225.13	PASS	AC=1;AF=0.5;AN=2;DP=2609;set=filterInvariant3-filterInvariant5-variant7-variant9-variant11-filterInvariant14-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant23-variant24-filterInvariant25-filterInvariant27-variant28-variant31-variant33-variant35-filterInvariant36-filterInvariant37-filterInvariant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,18:83:99:341,0,1828:20,45,1,17
chr1	65901119	.	T	C	620.05	PASS	AC=1;AF=0.805;AN=2;DP=761;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:332,0,621:1,16,2,9
chr1	66036441	.	A	G	2565.68	PASS	AC=1;AF=0.6;AN=2;DP=1189;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant10-variant12-variant13-variant15-variant22-variant23-variant27-variant29-variant32-variant34-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,44:93:99:1265,0,1218:20,29,12,32
chr1	66036501	.	G	T	1489.78	PASS	AC=2;AF=1;AN=2;DP=1607;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1666,147,0:0,0,12,37
chr1	66058513	.	A	G	3140.39	PASS	AC=2;AF=0.696;AN=2;DP=3659;MQ=60;set=variant-variant3-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3891,395,0:0,0,54,78
chr1	66064293	.	A	C	346.09	PASS	AC=2;AF=0.659;AN=2;DP=621;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant27-variant31-variant32-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1095,114,0:0,0,22,16
chr1	66067109	.	T	C	2723.92	PASS	AC=1;AF=0.647;AN=2;DP=946;MQ=60;set=variant3-variant6-variant10-variant11-variant15-variant17-variant18-variant19-variant21-variant24-variant27-variant31-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,33:58:99:890,0,671:18,7,22,11
chr1	66083537	.	G	A	49.73	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:65:78,0,65:2,0,2,0
chr1	66085574	.	T	A	764.83	PASS	AC=1;AF=0.563;AN=2;DP=975;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:701,0,844:20,11,19,8
chr1	66087301	.	G	C	572.17	PASS	AC=1;AF=0.563;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:173,0,410:1,9,1,5
chr1	66088701	.	C	A	686.16	PASS	AC=1;AF=0.563;AN=2;DP=1330;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1071,0,1036:15,25,17,28
chr1	66091656	.	ACACT	A	611.23	PASS	AC=1;AF=0.5;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:804,0,1445:18,7,13,8
chr1	66092017	.	T	A	85.5	PASS	AC=1;AF=0.565;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:310,0,350:0,9,1,8
chr1	66096105	.	AG	A	96.23	PASS	AC=1;AF=0.5;AN=2;DP=304;set=variant-variant3-variant10-variant13-variant15-filterInvariant21-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:266,0,467:16,9,10,6
chr1	66096106	.	G	A	83.07	PASS	AC=1;AF=0.773;AN=2;DP=1505;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:328,0,440:14,8,12,7
chr1	66099831	.	C	T	2679.51	PASS	AC=1;AF=0.565;AN=2;DP=4587;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,126:248:99:3017,0,3037:55,67,56,70
chr1	66100450	.	G	A	1649.82	PASS	AC=1;AF=0.565;AN=2;DP=2148;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1591,0,1587:18,39,17,36
chr1	66100915	.	C	T	1044.4	PASS	AC=1;AF=0.5;AN=2;DP=549;MQ=60;set=variant-variant10-variant13-variant15-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,49:106:99:1397,0,1595:36,21,32,17
chr1	66102257	.	G	A	1256.14	PASS	AC=1;AF=0.565;AN=2;DP=1553;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,33:80:99:894,0,1367:22,25,16,17
chr1	66103042	.	AAC	A,AACAC	5397.55	PASS	AC=1,1;AF=0.438,0.175;AN=2;DP=15102;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/2:425:99:16,14,192,203
chr1	66103350	.	C	A	5749.85	PASS	AC=1;AF=0.5;AN=2;DP=2375;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant13-variant15-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:235,220:455:99:5690,0,6185:107,128,100,120
chr1	66103674	.	G	T	1117.33	PASS	AC=1;AF=0.5;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant13-variant15-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,45:110:99:1219,0,1821:21,44,11,34
chr1	66105512	.	A	G	5399.9	PASS	AC=1;AF=0.565;AN=2;DP=9267;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:278,194:472:99:4740,0,6939:132,146,89,105
chr1	66105944	.	C	T	1749.4	PASS	AC=1;AF=0.563;AN=2;DP=3449;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,72:181:99:1547,0,2841:56,53,40,32
chr1	66106447	.	CT	C,CTT,CTTT	526.92	PASS	AC=1,0,0;AF=0.326,0.151,0.035;AN=2;DP=6329;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:106:99:9,30,15,52
chr1	66106469	.	A	G	1025.33	PASS	AC=1;AF=0.565;AN=2;DP=1530;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1447,0,1435:2,40,7,38
chr1	66458896	.	T	C	1114.02	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.788;FractionInformativeReads=1;MQ=60;MQRankSum=-1.815;QD=11.85;ReadPosRankSum=-1.398;SOR=0.833;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,44:94:99:1142,0,1247:21,29,17,27
chr1	66618300	.	T	A	121.67	PASS	AC=1;AF=0.625;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant22-variant27-variant31-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:359,0,158:1,4,2,7
chr1	66618303	.	T	A	121.67	PASS	AC=1;AF=0.611;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant22-variant26-variant27-variant31-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:359,0,158:0,4,2,6
chr1	66618316	.	TACACACACAC	TACACAC,T,TACAC	224.54	PASS	AC=0,0,2;AF=0.545,0.227,0.136;AN=2;DP=75;FS=0;MQ=60;set=variant10-variant11-variant15-variant16-variant21-variant29-variant32-variant33-variant35-variant37-variant40	GT:DP:GQ:SB	3/3:2:7:0,0,1,1
chr1	66731886	.	G	C	6855.68	PASS	AC=2;AF=0.724;AN=2;DP=8910;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,400:400:99:11986,1199,0:0,0,190,210
chr1	66732386	.	G	A	4047.73	PASS	AC=2;AF=0.724;AN=2;DP=3966;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,174:175:99:5054,478,0:1,0,84,90
chr1	66732529	.	A	T	1264.81	PASS	AC=2;AF=0.721;AN=2;DP=1389;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,48:49:99:1682,105,0:0,1,9,39
chr1	66829262	.	A	G	2454.52	PASS	AC=1;AF=0.802;AN=2;DP=3324;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,52:97:99:1279,0,1166:13,32,21,31
chr1	66831256	.	C	CA	780.25	PASS	AC=1;AF=0.528;AN=2;DP=608;MQ=60;set=variant6-variant11-variant12-variant15-variant19-variant20-variant22-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:432,0,544:13,5,11,4
chr1	66831370	.	G	A	1066.02	PASS	AC=1;AF=0.682;AN=2;DP=3117;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,56:111:99:1319,0,1308:28,27,31,25
chr1	66838733	.	A	C	7851.41	PASS	AC=1;AF=0.526;AN=2;DP=4568;FractionInformativeReads=1;MQ=60;set=variant6-variant11-variant12-variant15-variant17-variant19-variant20-variant22-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,133:298:99:3388,0,4455:97,68,75,58
chr1	66840104	.	A	ATGGGTT	12274.1	PASS	AC=1;AF=0.675;AN=2;DP=5904;MQ=60;set=variant6-variant11-variant12-variant15-variant17-variant19-variant20-variant22-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,206:401:99:8046,0,12096:74,121,81,125
chr1	67098664	.	G	A	692.36	PASS	AC=1;AF=0.5;AN=2;DP=877;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,32:86:99:726,0,1325:26,28,18,14
chr1	67101802	.	A	G	238.66	PASS	AC=1;AF=0.648;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:195,0,156:0,4,0,5
chr1	67109410	.	T	TTGTG	2654.94	PASS	AC=1;AF=0.5;AN=2;DP=1800;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,60:138:99:2270,0,3229:35,43,27,33
chr1	67109479	.	A	G	810.29	PASS	AC=1;AF=0.5;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:959,0,1182:12,29,9,25
chr1	67125899	.	A	G	455.91	PASS	AC=1;AF=0.545;AN=2;DP=226;set=variant2-variant3-variant4-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:498,0,792:12,0,13,0
chr1	67125932	.	G	A,GAGGA	1233.8	PASS	AC=1,0;AF=0.367,0.233;AN=2;DP=627;set=variant3-variant4-variant5-variant10-variant11-variant15-variant21-variant26-variant27-variant29-variant33-variant36-variant39-variant2-variant41	GT:DP:GQ:SB	0/1:45:99:17,2,21,5
chr1	67136610	.	G	T	507.33	PASS	AC=1;AF=0.5;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:765,0,969:23,16,18,13
chr1	67145322	.	C	A	625.43	PASS	AC=1;AF=0.729;AN=2;DP=2471;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,36:91:99:762,0,1414:32,23,21,15
chr1	67154730	.	CAA	CA,C	199.59	PASS	AC=1,0;AF=0.385,0.308;AN=2;DP=1382;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:37:33:4,2,22,9
chr1	67155862	.	TCTC	T	2062.97	PASS	AC=1;AF=0.558;AN=2;DP=2668;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,63:110:99:2429,0,2228:24,23,34,29
chr1	67160336	.	A	G	2304.14	PASS	AC=1;AF=0.714;AN=2;DP=4608;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,72:152:99:2179,0,2416:41,39,38,34
chr1	67160602	.	A	G	2478.75	PASS	AC=1;AF=0.625;AN=2;DP=5718;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,116:220:99:3259,0,2939:57,47,67,49
chr1	67160884	.	A	G	1607.12	PASS	AC=1;AF=0.593;AN=2;DP=2078;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,48:99:99:1374,0,1470:21,30,15,33
chr1	67160938	.	TA	TAAAA,TAAA,TAAAAAAAAAAAA,TAAAAAAAAAA,TAA,TAAAAAAAAA,T,TAAAAAAAAAAA,TAAAAAAAAAAAAAAAAA,TAAAAA,TAAAAAAAAAAAAA	502.94	PASS	AC=0,0,0,0,1,0,0,0,0,0,0;AF=0.135,0.162,0.014,0.041,0.054,0.014,0.068,0.081,0.014,0.041,0.014;AN=2;DP=2334;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-filterInvariant11-variant15-variant16-variant17-filterInvariant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:66:99:21,17,13,15
chr1	67160981	.	C	T	1023.44	PASS	AC=1;AF=0.593;AN=2;DP=2230;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1191,0,1584:36,26,28,22
chr1	67194911	.	TTC	T	1643.61	PASS	AC=1;AF=0.556;AN=2;DP=2473;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,64:122:99:2287,0,1977:38,20,40,24
chr1	67195184	.	C	G	1874.2	PASS	AC=1;AF=0.638;AN=2;DP=2526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,53:105:99:1989,0,2740:20,32,18,35
chr1	67195192	.	C	G	1772.24	PASS	AC=1;AF=0.638;AN=2;DP=2174;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1849,0,2612:16,31,16,27
chr1	67209088	.	G	A	1963.57	PASS	AC=1;AF=0.559;AN=2;DP=3544;MQ=60;set=variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,117:250:99:2872,0,3552:56,77,47,70
chr1	67209562	.	T	C	1954.14	PASS	AC=1;AF=0.643;AN=2;DP=5232;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,128:246:99:3017,0,2795:61,57,65,63
chr1	67209818	.	A	G	1550.48	PASS	AC=2;AF=0.78;AN=2;DP=2141;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1738,141,0:0,0,36,11
chr1	67236097	.	A	T	3470.41	PASS	AC=1;AF=0.577;AN=2;DP=1722;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,87:169:99:2120,0,1961:40,42,46,41
chr1	67242087	.	G	A	2532.19	PASS	AC=1;AF=0.577;AN=2;DP=1226;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,48:112:99:1156,0,1471:30,34,20,28
chr1	67242225	.	CAT	C	665.44	PASS	AC=1;AF=0.577;AN=2;DP=232;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,6:23:99:172,0,1655:6,11,1,5
chr1	67242241	.	TGG	T	589.1	PASS	AC=1;AF=0.577;AN=2;DP=164;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:184,0,1633:5,10,0,5
chr1	67242253	.	T	A	556.77	PASS	AC=1;AF=0.577;AN=2;DP=126;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:180,0,1347:2,8,0,5
chr1	67242260	.	GTA	G	457.73	PASS	AC=1;AF=0.577;AN=2;DP=109;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:183,0,1276:1,7,0,5
chr1	67244488	.	T	TA	595.21	PASS	AC=1;AF=0.633;AN=2;DP=1595;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1278,0,947:10,21,15,25
chr1	67266756	.	T	A	1175.39	PASS	AC=1;AF=0.919;AN=2;DP=3781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,55:116:99:1390,0,1560:33,28,33,22
chr1	67279881	.	C	A	619.35	PASS	AC=1;AF=0.5;AN=2;DP=552;MQ=60;set=variant-variant2-variant4-variant8-variant15-variant16-variant29-variant38	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1043,0,1100:21,27,19,26
chr1	67288229	.	C	A	253.48	PASS	AC=1;AF=0.5;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant15-variant16-variant29-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:355,0,508:6,13,1,10
chr1	67292473	.	A	AT	2212.73	PASS	AC=2;AF=0.735;AN=2;DP=1996;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2410,163,0:0,0,38,15
chr1	67292478	.	T	A	2246.46	PASS	AC=2;AF=0.735;AN=2;DP=2184;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2470,168,0:0,0,39,17
chr1	67313122	.	T	C	689.83	PASS	AC=1;AF=0.5;AN=2;DP=141;MQ=60;set=variant8-variant15	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:953,0,1091:24,20,25,16
chr1	67313793	.	G	A	4148.51	PASS	AC=1;AF=0.563;AN=2;DP=4688;MQ=60;set=variant-variant7-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant31-variant32-variant33-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:189,174:363:99:4059,0,4875:97,92,85,89
chr1	67390416	.	G	C	5783.18	PASS	AC=1;AF=0.833;AN=2;DP=10222;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,148:335:99:3090,0,4495:98,89,75,73
chr1	67390468	.	C	G	5604.71	PASS	AC=1;AF=0.845;AN=2;DP=8734;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:183,116:299:99:2731,0,4709:85,98,52,64
chr1	67396222	.	T	G	901.52	PASS	AC=1;AF=0.898;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:419,0,342:0,10,0,11
chr1	67412822	.	T	G	7497.27	PASS	AC=1;AF=0.845;AN=2;DP=8560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,123:278:99:2942,0,3853:92,63,71,52
chr1	67412918	.	G	C	13448	PASS	AC=1;AF=0.845;AN=2;DP=14622;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:238,195:433:99:4773,0,6268:126,112,113,82
chr1	67413478	.	A	G	1628.54	PASS	AC=1;AF=0.845;AN=2;DP=2778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,44:78:99:1147,0,762:20,14,22,22
chr1	67425311	.	T	G	768.38	PASS	AC=1;AF=0.845;AN=2;DP=1253;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:307,0,302:7,5,8,5
chr1	67425494	.	A	AT	279.83	PASS	AC=1;AF=0.878;AN=2;DP=495;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:82:318,0,82:1,4,6,8
chr1	67436446	.	A	G	118.94	PASS	AC=1;AF=0.5;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant15-variant21-variant24-variant29-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:366,0,337:9,0,10,3
chr1	67438535	.	A	T	1147.65	PASS	AC=1;AF=0.567;AN=2;DP=1406;MQ=60;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:1314,0,1482:38,28,36,18
chr1	67442210	.	C	T	649.37	PASS	AC=1;AF=0.5;AN=2;DP=594;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,45:88:99:1110,0,1020:26,17,29,16
chr1	67442275	.	C	T	1230.12	PASS	AC=1;AF=0.567;AN=2;DP=1943;MQ=60;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,86:157:99:2040,0,1710:37,34,44,42
chr1	67447450	.	A	G	593.67	PASS	AC=1;AF=0.567;AN=2;DP=806;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,30:37:99:875,0,165:7,0,22,8
chr1	67451497	.	ATTTT	ATTTTT,ATTT,AT,A	146.31	PASS	AC=0,0,0,1;AF=0.111,0.194,0.167,0.139;AN=2;DP=475;set=variant-variant2-variant7-variant8-filterInvariant9-variant10-variant11-variant15-variant16-filterInvariant17-variant19-variant21-variant23-variant24-variant29-variant33-variant37-variant38	GT:DP:GQ:SB	0/4:23:99:4,4,5,10
chr1	67451602	.	A	C	839.33	PASS	AC=1;AF=0.567;AN=2;DP=979;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:990,0,1308:31,16,26,11
chr1	67451922	.	C	T	4050.5	PASS	AC=1;AF=0.567;AN=2;DP=3023;MQ=60;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,106:254:99:4025,0,7825:60,88,40,66
chr1	67451924	.	G	T	4050.5	PASS	AC=1;AF=0.567;AN=2;DP=2994;MQ=60;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,106:250:99:4025,0,7825:56,88,41,65
chr1	67452322	.	G	A	2557.41	PASS	AC=1;AF=0.567;AN=2;DP=4322;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,162:352:99:4137,0,5019:111,79,90,72
chr1	67453035	.	A	G	32552.5	PASS	AC=2;AF=0.966;AN=2;DP=22026;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,554:554:99:16869,1660,0:0,0,316,238
chr1	67465988	.	A	T	107.51	PASS	AC=1;AF=0.545;AN=2;DP=175;set=variant4-variant15-variant22-variant23-variant24-variant26-variant31-variant33-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:36:127,0,36:3,1,6,4
chr1	67468124	.	G	C	4123.89	PASS	AC=1;AF=0.567;AN=2;DP=5548;MQ=60;set=variant2-variant4-variant7-variant8-variant15-variant21-variant23-variant24-variant29-variant32-variant34-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:224,211:435:99:5055,0,5640:119,105,117,94
chr1	67469170	.	T	C	1431.85	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=2.877;FractionInformativeReads=1;MQ=60;MQRankSum=-1.302;QD=15.07;ReadPosRankSum=-1.586;SOR=0.419;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:44,51:95:99:1460,0,1275:31,13,32,19
chr1	67487119	.	C	A	730.94	PASS	AC=1;AF=0.756;AN=2;DP=3589;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,55:100:99:1492,0,1174:28,17,32,23
chr1	67487374	.	TCCAACACAGACACAGACACAGACA	TCAGACACAGACACAGACA,T	421.76	PASS	AC=0,1;AF=0.63,0.019;AN=2;DP=1401;set=variant2-filterInvariant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant26-variant27-variant28-filterInvariant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:40:99:10,17,7,6
chr1	67508080	.	CCACT	C	1237.05	PASS	AC=1;AF=0.629;AN=2;DP=2289;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:1328,0,2144:12,25,8,27
chr1	67512903	.	G	T	408.69	PASS	AC=1;AF=0.744;AN=2;DP=2484;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,24:60:99:535,0,850:20,16,15,9
chr1	67512920	.	A	C	537.22	PASS	AC=1;AF=0.744;AN=2;DP=2784;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:671,0,862:21,20,17,13
chr1	67519422	.	G	A	133.71	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant12-variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:501,0,327:9,6,11,7
chr1	67557966	.	G	T	569.92	PASS	AC=1;AF=0.793;AN=2;DP=2145;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,21:63:99:509,0,1028:22,20,14,7
chr1	67558063	.	C	G	1515.86	PASS	AC=1;AF=0.744;AN=2;DP=1671;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:735,0,712:15,11,13,12
chr1	67558169	.	T	C	3586.91	PASS	AC=2;AF=0.86;AN=2;DP=4407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4455,434,0:0,0,86,59
chr1	67558360	.	C	T	3143.35	PASS	AC=1;AF=0.5;AN=2;DP=2303;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:146,125:271:99:3214,0,3624:82,64,68,57
chr1	67558377	.	ACTATG	A	4578.83	PASS	AC=1;AF=0.55;AN=2;DP=2550;MQ=60;set=variant6-variant13-variant15-variant18-variant22-variant23-variant24-variant28-variant29-variant32	GT:AD:DP:GQ:PL:SB	0/1:137,148:285:99:5717,0,5297:78,59,83,65
chr1	67558739	.	C	T	2802.81	PASS	AC=2;AF=0.86;AN=2;DP=3473;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2900,255,0:0,0,39,46
chr1	67559929	.	G	A	5358.93	PASS	AC=1;AF=0.694;AN=2;DP=18159;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:317,346:663:99:8347,0,7530:167,150,194,152
chr1	67560897	.	A	G	7471.05	PASS	AC=2;AF=0.86;AN=2;DP=7873;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,255:255:99:8369,764,0:0,0,121,134
chr1	67560956	.	C	T	7237.36	PASS	AC=2;AF=0.86;AN=2;DP=7745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,260:260:99:8344,778,0:0,0,119,141
chr1	67561251	.	C	T	2219.97	PASS	AC=1;AF=0.571;AN=2;DP=1064;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant25-variant26-variant30-variant32-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,50:107:99:1451,0,1599:19,38,15,35
chr1	67561265	.	T	A	721.66	PASS	AC=1;AF=0.694;AN=2;DP=2555;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:1244,0,1295:13,30,15,27
chr1	67561311	.	T	A	529.28	PASS	AC=1;AF=0.5;AN=2;DP=522;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:1051,0,939:16,20,12,23
chr1	67562106	.	G	T	1111.7	PASS	AC=1;AF=0.744;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:524,0,304:3,9,5,13
chr1	67577367	.	A	T	647.1	PASS	AC=2;AF=0.798;AN=2;DP=3064;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2950,292,0:0,0,43,55
chr1	67579245	.	G	A	41.48	PASS	AC=1;AF=0.7;AN=2;DP=282;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:25:192,0,25:1,0,5,1
chr1	67579386	.	A	G	1248.24	PASS	AC=2;AF=0.86;AN=2;DP=2114;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,55:56:99:1715,158,0:1,0,31,24
chr1	67591347	.	A	G	137.66	PASS	AC=2;AF=0.7;AN=2;DP=375;FractionInformativeReads=1;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:442,30,0:0,0,10,0
chr1	67591611	.	GAAA	GA,GAA,G	462.52	PASS	AC=0,1,0;AF=0.258,0.455,0.045;AN=2;DP=1226;set=variant-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:20:28:2,3,6,9
chr1	67591660	.	G	A	201.16	PASS	AC=2;AF=0.81;AN=2;DP=529;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:550,42,0:0,0,2,12
chr1	67600665	.	A	C	355.42	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5947;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:135,54:189:99:451,0,2581:6,129,54,0
chr1	67600686	.	G	T	876.54	PASS	AC=1;AF=0.526;AN=2;DP=1949;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant32-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,53:120:99:1748,0,2574:1,66,2,51
chr1	67633812	.	G	T	788.36	PASS	AC=1;AF=0.641;AN=2;DP=2131;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,39:94:99:938,0,1203:30,25,25,14
chr1	67648460	.	T	C	896.25	PASS	AC=2;AF=0.884;AN=2;DP=1113;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1181,102,0:0,0,24,10
chr1	67672567	.	CTTT	CTT,CT,CTTTT,C,CTTTTT	149.63	PASS	AC=0,0,1,0,0;AF=0.146,0.042,0.292,0.021,0.021;AN=2;DP=829;set=variant-variant2-filterInvariant4-variant6-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant19-filterInvariant20-variant23-filterInvariant24-variant25-variant26-variant28-filterInvariant31-variant33-variant39-variant41-variant42-filterInvariant44	GT:DP:GQ:SB	0/3:29:99:8,5,9,7
chr1	67672765	.	G	A	1382.77	PASS	AC=1;AF=0.565;AN=2;DP=2257;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant31-variant33-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:55,69:124:99:1517,0,1401:22,33,31,38
chr1	67672911	.	C	T	166.67	PASS	AC=1;AF=0.568;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant31-variant33-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:311,0,181:0,5,4,7
chr1	67685387	.	T	C	2488.87	PASS	AC=1;AF=0.875;AN=2;DP=2966;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,52:93:99:1088,0,1063:14,27,26,26
chr1	67685443	.	G	A	582.04	PASS	AC=1;AF=0.608;AN=2;DP=1402;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,30:44:99:732,0,351:3,11,11,19
chr1	67705726	.	A	G	2301.66	PASS	AC=1;AF=0.875;AN=2;DP=3236;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,48:96:99:1177,0,1171:24,24,31,17
chr1	67773351	.	C	T	1309.72	PASS	AC=1;AF=0.536;AN=2;DP=875;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant12-variant15-variant18-variant20-variant24-variant34-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:955,0,984:14,25,16,24
chr1	67773649	.	T	C	805.42	PASS	AC=2;AF=0.661;AN=2;DP=546;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:715,72,0:0,0,10,14
chr1	67773778	.	TTA	T	41.01	PASS	AC=2;AF=0.8;AN=2;DP=28;FS=0;MQ=60;set=variant15-variant19-variant24-variant28-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:78,6,0:0,0,0,2
chr1	67795319	.	T	C	4593.16	PASS	AC=2;AF=0.977;AN=2;DP=5714;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:3862,405,0:0,0,64,71
chr1	67796641	.	ATTAAC	A	163.75	PASS	AC=1;AF=0.5;AN=2;DP=99;MQ=60;set=variant3-variant13-variant14-variant15-variant16-variant22-variant23-variant26-variant28-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:279,0,330:1,4,0,7
chr1	67862466	.	G	T	156.22	PASS	AC=2;AF=0.988;AN=2;DP=459;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.529;ReadPosRankSum=0.529;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:333,33,0:0,0,4,7
chr1	67874252	.	CA	CAA,C	692.39	PASS	AC=1,0;AF=0.346,0.154;AN=2;DP=6373;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:157:99:59,49,25,24
chr1	67875102	.	ACCCC	ACC,A	37.95	PASS	AC=1,0;AF=0.517,0.017;AN=2;DP=1041;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant8-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant15-variant17-variant18-variant19-variant20-variant24-variant26-variant28-variant29-variant30-variant31-filterInvariant35-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:30:95:14,10,4,2
chr1	67875104	.	C	A	39.31	PASS	AC=1;AF=0.5;AN=2;DP=220;set=filterInvariant6-variant7-variant13-variant15-variant-variant17	GT:AD:DP:GQ:PL:SB	0/1:6,23:29:99:505,0,100:4,2,13,10
chr1	67875203	.	C	T	1485.53	PASS	AC=2;AF=0.58;AN=2;DP=3041;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant30-variant32-variant33-variant34-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:2,142:144:99:4158,381,0:1,1,76,66
chr1	68151980	.	T	G	1608.69	PASS	AC=2;AF=0.878;AN=2;DP=3000;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:4034,300,0:0,0,90,10
chr1	68152363	.	G	A	349.91	PASS	AC=2;AF=0.767;AN=2;DP=621;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:967,78,0:0,0,5,21
chr1	68152388	.	T	C	385.6	PASS	AC=2;AF=0.814;AN=2;DP=483;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:764,63,0:0,0,5,16
chr1	68154086	.	G	C	731.07	PASS	AC=2;AF=0.819;AN=2;DP=1115;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1153,111,0:0,0,12,25
chr1	68167491	.	C	T	1702.85	PASS	AC=2;AF=0.734;AN=2;DP=3013;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3384,296,0:0,0,32,67
chr1	68170255	.	C	A	290.66	PASS	AC=2;AF=0.734;AN=2;DP=1178;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1578,126,0:0,0,28,14
chr1	68173264	.	C	T	2770.85	PASS	AC=2;AF=0.734;AN=2;DP=5722;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6190,611,0:0,0,102,102
chr1	68517066	.	C	T	411.42	PASS	AC=2;AF=0.886;AN=2;DP=849;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:790,72,0:0,0,17,7
chr1	68564488	.	T	C	790.94	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=5.05;FractionInformativeReads=1;MQ=60;MQRankSum=-1.234;QD=22.6;ReadPosRankSum=1.442;SOR=2.262;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:12,23:35:99:819,0,303:3,9,2,21
chr1	68591104	.	A	G	3804.97	PASS	AC=1;AF=0.779;AN=2;DP=10173;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,153:287:99:4085,0,3299:79,55,95,58
chr1	68591173	.	A	G	5592.93	PASS	AC=1;AF=0.767;AN=2;DP=14556;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:208,236:444:99:6186,0,5337:122,86,140,96
chr1	68591405	.	G	A	4623.36	PASS	AC=1;AF=0.791;AN=2;DP=12565;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:210,182:392:99:4673,0,5293:80,130,68,114
chr1	68593131	.	C	G	280.3	PASS	AC=2;AF=0.652;AN=2;DP=375;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:374,30,0:0,0,1,9
chr1	68603586	.	C	T	1022.83	PASS	AC=1;AF=0.604;AN=2;DP=2135;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant15-variant16-variant18-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1221,0,1181:23,23,23,28
chr1	68603731	.	A	G	341.22	PASS	AC=1;AF=0.798;AN=2;DP=1292;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:313,0,568:4,15,4,9
chr1	68614013	.	A	G	1757.67	PASS	AC=2;AF=1;AN=2;DP=2127;FS=0;MQ=60;MQRankSum=1.354;ReadPosRankSum=1.669;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2319,209,0:0,0,30,40
chr1	68620762	.	G	A	1024.13	PASS	AC=1;AF=0.63;AN=2;DP=2391;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,58:126:99:1187,0,1651:39,29,32,26
chr1	68624878	.	C	T	1006.51	PASS	AC=1;AF=0.586;AN=2;DP=3095;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant30-variant34-variant36-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,71:142:99:1683,0,1724:32,39,30,41
chr1	68652184	.	T	TA	335.75	PASS	AC=1;AF=0.5;AN=2;DP=537;MQ=60;set=variant-variant4-variant15-variant16-variant24-variant32-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:580,0,803:25,15,24,8
chr1	68660092	.	T	G	225.54	PASS	AC=1;AF=0.567;AN=2;DP=424;MQ=60;set=variant2-variant4-variant5-variant6-variant10-variant12-variant15-variant17-variant19-variant25-variant33-variant34-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:336,0,397:5,9,4,7
chr1	68660205	.	A	C	40.73	PASS	AC=1;AF=0.729;AN=2;DP=169;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:115,0,150:0,4,1,3
chr1	68894544	.	G	C	565.66	PASS	AC=2;AF=0.614;AN=2;DP=526;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1005,93,0:0,0,21,10
chr1	68894730	.	G	GCT	2029.26	PASS	AC=2;AF=0.636;AN=2;DP=1283;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,75:77:99:2170,180,0:1,1,35,40
chr1	68894848	.	C	T	2627.39	PASS	AC=2;AF=0.636;AN=2;DP=2083;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3795,333,0:0,0,73,38
chr1	68894928	.	T	C	2635.2	PASS	AC=1;AF=0.577;AN=2;DP=3366;MQ=60;set=variant-variant2-variant7-variant11-variant12-variant14-variant15-variant22-variant27-variant33-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:162,152:314:99:3895,0,3973:99,63,94,58
chr1	68896644	.	G	A	752.07	PASS	AC=2;AF=0.636;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:991,84,0:0,0,23,5
chr1	68903942	.	C	T	568.4	PASS	AC=1;AF=0.556;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant15-variant18-variant19-variant25-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:703,0,941:13,24,12,18
chr1	68905358	.	G	C	1100.97	PASS	AC=2;AF=0.62;AN=2;DP=1177;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1773,164,0:0,0,15,40
chr1	68914006	.	C	T	193.54	PASS	AC=1;AF=0.667;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant11-variant12-variant14-variant15-variant33-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:191,0,113:3,0,5,0
chr1	68915479	.	A	T	216.61	PASS	AC=1;AF=0.55;AN=2;DP=164;MQ=60;set=variant-variant2-variant7-variant11-variant12-variant14-variant15-variant22-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:576,0,445:11,3,15,2
chr1	68939744	.	A	G	759.61	PASS	AC=1;AF=0.609;AN=2;DP=1415;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:933,0,500:15,2,22,7
chr1	68939908	.	A	G	11214	PASS	AC=2;AF=0.977;AN=2;DP=13453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,372:373:99:11271,1106,0:1,0,205,167
chr1	68940883	.	T	TTA	3497.65	PASS	AC=1;AF=0.763;AN=2;DP=8525;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,125:243:99:4834,0,4762:55,63,54,71
chr1	68943436	.	G	A	498.72	PASS	AC=1;AF=0.75;AN=2;DP=989;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:632,0,564:7,3,9,8
chr1	68943442	.	A	G	501.72	PASS	AC=1;AF=0.743;AN=2;DP=1024;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:611,0,567:7,3,8,7
chr1	68943665	.	T	G	335.59	PASS	AC=1;AF=0.606;AN=2;DP=1974;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,36:82:99:783,0,992:23,23,19,17
chr1	68947318	.	C	CA	354.35	PASS	AC=2;AF=0.852;AN=2;DP=3103;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2242,213,0:0,0,33,38
chr1	68949139	.	T	C	515.12	PASS	AC=1;AF=0.536;AN=2;DP=521;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant14-variant15-variant22-variant29-variant30-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:556,0,667:9,16,8,14
chr1	68952564	.	AACACACACAC	AACACAC,AACACACAC,AACAC,A	93.24	PASS	AC=1,1,0,0;AF=0.125,0.528,0.125,0.014;AN=2;DP=478;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:17:99:0,0,13,4
chr1	68960476	.	T	G	622.24	PASS	AC=1;AF=0.765;AN=2;DP=519;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:163,0,377:5,11,2,5
chr1	70034370	.	C	CCAGCCGCGTG	2219.88	PASS	AC=2;AF=0.943;AN=2;DP=8469;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,235:235:99:10015,710,0:0,0,90,145
chr1	70226125	.	T	C	862.67	PASS	AC=1;AF=0.542;AN=2;DP=470;MQ=60;set=variant4-variant8-variant9-variant11-variant14-variant15-variant31-variant33-variant34-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:612,0,544:3,15,2,16
chr1	70587360	.	C	T	1755.48	PASS	AC=2;AF=0.774;AN=2;DP=2499;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2591,228,0:0,0,53,23
chr1	70611347	.	A	G	5810.49	PASS	AC=2;AF=0.966;AN=2;DP=7695;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6439,638,0:0,0,106,107
chr1	70639228	.	A	G	966.33	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=2.419;FractionInformativeReads=1;MQ=60;MQRankSum=-0.192;QD=8.4;ReadPosRankSum=-2.507;SOR=0.929;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:70,45:115:99:995,0,1796:35,35,25,20
chr1	70654981	.	GAAA	GAA,GA,G,GAAAA	142.08	PASS	AC=1,0,0,0;AF=0.265,0.176,0.118,0.015;AN=2;DP=3233;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:78:99:16,26,11,25
chr1	70718273	.	A	ATT	8320.52	PASS	AC=2;AF=1;AN=2;DP=7006;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:10020,686,0:0,0,114,110
chr1	70832053	.	G	A	595.06	PASS	AC=1;AF=0.5;AN=2;DP=451;MQ=60;set=variant2-variant5-variant15-variant26-variant27-variant29-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:40,19:59:99:420,0,1110:17,23,8,11
chr1	70904523	.	T	TTGTG,TTGTGTG,TTGTGTGTG,TTG	645.31	PASS	AC=0,2,0,0;AF=0.488,0.321,0.024,0.012;AN=2;DP=2516;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/2:49:99:1,1,14,33
chr1	70905333	.	A	T	88.15	PASS	AC=2;AF=0.625;AN=2;DP=156;MQ=60;set=variant2-variant3-variant8-variant15-variant17-variant23-variant26-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:379,39,0:0,0,2,11
chr1	71327936	.	T	TA	418.23	PASS	AC=1;AF=0.684;AN=2;DP=896;MQ=60;set=variant-variant4-variant6-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:722,0,576:16,10,18,13
chr1	71328234	.	A	G	160.65	PASS	AC=1;AF=0.711;AN=2;DP=289;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:377,0,262:0,8,0,11
chr1	71331220	.	G	A	757.32	PASS	AC=1;AF=0.545;AN=2;DP=199;MQ=60;set=variant4-variant6-variant13-variant15-variant21-variant22-variant23-variant25-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:171,0,397:8,4,5,0
chr1	71331498	.	A	G	3027.21	PASS	AC=2;AF=0.955;AN=2;DP=5342;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4251,396,0:0,0,61,71
chr1	71334870	.	C	T	1172.73	PASS	AC=2;AF=0.672;AN=2;DP=3747;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4536,452,0:0,0,88,63
chr1	71419499	.	C	T	1045.7	PASS	AC=1;AF=0.86;AN=2;DP=1554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:737,0,341:5,8,6,18
chr1	71440217	.	C	T	121.69	PASS	AC=1;AF=0.71;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:237,0,229:0,6,2,6
chr1	71472911	.	G	A	2422.71	PASS	AC=1;AF=0.5;AN=2;DP=1024;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant25-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,123:262:99:3255,0,3803:78,61,74,49
chr1	71476872	.	G	A	1641.41	PASS	AC=1;AF=0.633;AN=2;DP=3930;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant26-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:116,84:200:99:2563,0,3437:41,75,23,61
chr1	71529401	.	C	T	2108.47	PASS	AC=2;AF=0.69;AN=2;DP=3281;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4562,386,0:0,0,54,75
chr1	71533287	.	A	T	242.68	PASS	AC=1;AF=0.607;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant15-variant16-variant19-variant22-variant24-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:184,0,140:4,1,5,1
chr1	71537943	.	A	G	726.16	PASS	AC=1;AF=0.536;AN=2;DP=809;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant15-variant16-variant19-variant22-variant32-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,27:70:99:560,0,1058:18,25,10,17
chr1	71870127	.	G	A	7671.11	PASS	AC=2;AF=1;AN=2;DP=10283;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,285:285:99:9067,855,0:0,0,120,165
chr1	71870272	.	C	CT	1494.3	PASS	AC=2;AF=1;AN=2;DP=2492;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1996,198,0:0,0,24,42
chr1	72058367	.	C	T	823.56	PASS	AC=2;AF=0.989;AN=2;DP=918;MQ=60;MQRankSum=1.256;ReadPosRankSum=-2.927;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1040,93,0:0,0,23,8
chr1	72058405	.	T	C	1230.37	PASS	AC=2;AF=0.989;AN=2;DP=1599;MQ=60;MQRankSum=0.456;ReadPosRankSum=-0.76;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2023,189,0:0,0,41,22
chr1	72058552	.	G	A	2583.01	PASS	AC=2;AF=0.989;AN=2;DP=4517;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3937,389,0:0,0,63,67
chr1	72058775	.	G	A	145.31	PASS	AC=2;AF=0.988;AN=2;DP=345;FS=0;MQ=60;MQRankSum=0.198;ReadPosRankSum=1.495;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:406,30,0:0,0,1,9
chr1	72242039	.	G	A	356.44	PASS	AC=1;AF=0.951;AN=2;DP=574;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:268,0,319:1,8,1,7
chr1	72747834	.	C	T	730.38	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.785;QD=18.73;ReadPosRankSum=-0.385;SOR=0.836;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:759,0,511:13,3,19,4
chr1	72747844	.	C	T	78.07	PASS	AC=2;AF=0.629;AN=2;DP=1490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant33-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1699,129,0:0,0,35,8
chr1	72748277	.	ATTTTTTTT	ATTTTTTTTT,ATTTTTTTTTT,A,ATTTTTTTTTTTT,ATTTTTTTTTTT,ATTTTTTTTTTTTT,AT	36.03	PASS	AC=0,0,1,0,0,0,0;AF=0.25,0.115,0.038,0.058,0.077,0.038,0.019;AN=2;DP=2234;set=filterInvariant2-variant3-filterInvariant5-variant8-filterInvariant10-filterInvariant11-filterInvariant13-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant21-variant22-filterInvariant24-variant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37	GT:DP:GQ:SB	0/3:34:99:5,9,1,19
chr1	74491578	.	G	T	166.45	PASS	AC=1;AF=0.667;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant21	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:195,0,156:4,0,5,0
chr1	74491800	.	T	A	4303.35	PASS	AC=2;AF=0.953;AN=2;DP=5238;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4019,396,0:0,0,79,54
chr1	74506942	.	G	A	754.95	PASS	AC=1;AF=0.5;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant21-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,30:49:99:783,0,465:14,5,20,10
chr1	74507315	.	C	T	898.61	PASS	AC=1;AF=0.5;AN=2;DP=544;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant21-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:63,45:108:99:927,0,1723:34,29,25,20
chr1	74507711	.	T	G	535.76	PASS	AC=2;AF=0.964;AN=2;DP=464;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:543,48,0:0,0,4,12
chr1	74575049	.	A	T	481.53	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:127,0,436:8,7,4,3
chr1	74575182	.	C	T	1488.2	PASS	AC=2;AF=0.953;AN=2;DP=2300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1585,164,0:0,0,30,25
chr1	74645641	.	A	G	3363.68	PASS	AC=2;AF=0.953;AN=2;DP=3463;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3396,302,0:0,0,75,26
chr1	74646514	.	C	T	1605.52	PASS	AC=2;AF=1;AN=2;DP=2047;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1749,162,0:0,0,18,36
chr1	74648408	.	C	T	1553.36	PASS	AC=1;AF=0.5;AN=2;DP=569;MQ=60;set=variant15-variant17-variant21-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:69,70:139:99:1582,0,1610:31,38,32,38
chr1	74663709	.	G	A	374.6	PASS	AC=1;AF=0.712;AN=2;DP=1665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,15:48:99:365,0,972:24,9,10,5
chr1	74663814	.	C	G	1136.42	PASS	AC=1;AF=0.712;AN=2;DP=3691;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,51:121:99:1184,0,1797:37,33,29,22
chr1	74664149	.	T	C	919.85	PASS	AC=1;AF=0.712;AN=2;DP=3458;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,51:116:99:1157,0,1751:20,45,20,31
chr1	74665493	.	G	A	1513.15	PASS	AC=1;AF=0.712;AN=2;DP=5057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,71:144:99:1598,0,1774:32,41,27,44
chr1	74669973	.	T	G	399.7	PASS	AC=2;AF=0.964;AN=2;DP=377;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:398,30,0:0,0,9,1
chr1	74671519	.	A	G	4618.95	PASS	AC=1;AF=0.712;AN=2;DP=8828;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,173:334:99:4305,0,3893:91,70,94,79
chr1	74672323	.	C	A	4620.89	PASS	AC=1;AF=0.712;AN=2;DP=12005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:230,227:457:99:5755,0,6265:125,105,125,102
chr1	74672474	.	G	A	3804.42	PASS	AC=1;AF=0.712;AN=2;DP=13061;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:268,260:528:99:6431,0,7036:116,152,117,143
chr1	74672639	.	C	A	5314.54	PASS	AC=1;AF=0.5;AN=2;DP=2062;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant21-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:234,215:449:99:5343,0,9246:127,107,115,100
chr1	74672640	.	T	A	4971.62	PASS	AC=1;AF=0.712;AN=2;DP=13530;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:215,236:451:99:6048,0,8247:115,100,130,106
chr1	74672776	.	G	A	3115.85	PASS	AC=1;AF=0.5;AN=2;DP=1156;MQ=60;set=variant15-variant17-variant21-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:173,109:282:99:3144,0,4748:66,107,35,74
chr1	74699331	.	C	G	1073.11	PASS	AC=1;AF=0.71;AN=2;DP=3197;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,49:111:99:1248,0,1565:30,32,22,27
chr1	74701295	.	T	A	236.09	PASS	AC=2;AF=1;AN=2;DP=231;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:195,21,0:0,0,2,5
chr1	74701950	.	T	A	354.72	PASS	AC=1;AF=0.655;AN=2;DP=1113;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:467,0,621:5,15,7,11
chr1	74716515	.	CT	CTT,C	472.78	PASS	AC=0,1;AF=0.329,0.195;AN=2;DP=4467;set=variant-variant2-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:80:99:16,41,5,18
chr1	74801864	.	A	G	182.04	PASS	AC=1;AF=0.5;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:290,0,646:8,15,3,9
chr1	74819077	.	T	G	2467.88	PASS	AC=2;AF=0.932;AN=2;DP=4018;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3083,304,0:0,0,47,55
chr1	74836228	.	T	A	1323.2	PASS	AC=1;AF=0.5;AN=2;DP=511;MQ=60;set=variant-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,70:120:99:1837,0,1298:28,22,35,35
chr1	74837216	.	T	TAG	7050.36	PASS	AC=2;AF=1;AN=2;DP=7081;FS=0;MQ=60;MQRankSum=2.045;ReadPosRankSum=0.574;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:8630,583,0:0,0,91,101
chr1	74837776	.	GAAAAAAAAA	GA,G,GAAAAAAA,GAAAAAAAA	3323.8	PASS	AC=0,1,0,0;AF=0.795,0.057,0.011,0.057;AN=2;DP=5576;set=Intersection	GT:DP:GQ:SB	0/2:104:99:22,13,34,35
chr1	74838630	.	T	C	3781.56	PASS	AC=1;AF=0.5;AN=2;DP=1172;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:135,137:272:99:3368,0,3192:74,61,72,65
chr1	74841173	.	A	C	1553.67	PASS	AC=2;AF=1;AN=2;DP=2525;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2427,216,0:0,0,35,37
chr1	74901739	.	CTTT	CTT,CT,C	256.31	PASS	AC=1,0,0;AF=0.395,0.316,0.013;AN=2;DP=1553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:25:25:2,3,12,8
chr1	74930565	.	T	C	2220.12	PASS	AC=1;AF=0.5;AN=2;DP=1110;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant22-variant24-variant26-variant39	GT:AD:DP:GQ:PL:SB	0/1:101,99:200:99:2523,0,2618:39,62,37,62
chr1	75006027	.	A	G	1731.91	PASS	AC=2;AF=0.671;AN=2;DP=2003;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2024,210,0:0,0,27,43
chr1	75006076	.	G	A	1109.78	PASS	AC=2;AF=0.966;AN=2;DP=1278;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,31:32:89:1141,89,0:1,0,5,26
chr1	75010117	.	T	C	4196.43	PASS	AC=2;AF=0.966;AN=2;DP=5150;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:5441,444,0:0,0,28,120
chr1	75010153	.	A	G	2191.27	PASS	AC=2;AF=0.966;AN=2;DP=2302;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:3098,225,0:0,0,3,72
chr1	75036783	.	T	C	3240.83	PASS	AC=2;AF=1;AN=2;DP=5005;FS=0;MQ=60;MQRankSum=0.214;ReadPosRankSum=-1.538;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4086,378,0:0,0,81,45
chr1	75036812	.	C	T	4009.56	PASS	AC=2;AF=1;AN=2;DP=6400;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,158:159:99:5114,467,0:1,0,94,64
chr1	75038964	.	C	T	2110.51	PASS	AC=1;AF=0.5;AN=2;DP=371;MQ=60;set=variant15-variant19	GT:AD:DP:GQ:PL:SB	0/1:111,82:193:99:2139,0,2894:54,57,49,33
chr1	75065441	.	C	T	1769.55	PASS	AC=1;AF=0.5;AN=2;DP=787;MQ=60;set=variant-variant5-variant15-variant19-variant30-variant33	GT:AD:DP:GQ:PL:SB	0/1:86,76:162:99:1757,0,1974:44,42,39,37
chr1	75072264	.	G	T	190.65	PASS	AC=1;AF=0.639;AN=2;DP=881;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,23:30:99:773,0,100:4,3,17,6
chr1	75086412	.	G	C	679.08	PASS	AC=1;AF=0.5;AN=2;DP=1038;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant30-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:49,44:93:99:1060,0,1222:27,22,26,18
chr1	75108863	.	A	C	1486.22	PASS	AC=1;AF=0.791;AN=2;DP=2175;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:914,0,763:8,23,15,21
chr1	75171109	.	A	T	201.09	PASS	AC=2;AF=0.63;AN=2;DP=391;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:453,36,0:0,0,11,1
chr1	75171211	.	G	A	1179.01	PASS	AC=2;AF=0.63;AN=2;DP=2885;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3759,339,0:0,0,81,32
chr1	75171751	.	T	C	3588.85	PASS	AC=2;AF=0.703;AN=2;DP=12748;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,350:350:99:11556,1050,0:0,0,152,198
chr1	75172001	.	T	A	2157.25	PASS	AC=2;AF=0.63;AN=2;DP=4085;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5831,564,0:0,0,91,98
chr1	75172756	.	TAA	TA,TAAA,T	509.32	PASS	AC=0,0,2;AF=0.392,0.054,0.311;AN=2;DP=2336;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:73:99:0,0,27,46
chr1	75190452	.	C	T	2572.53	PASS	AC=2;AF=0.775;AN=2;DP=3741;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3023,303,0:0,0,60,41
chr1	75198740	.	A	C	1169.71	PASS	AC=2;AF=0.692;AN=2;DP=1333;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1970,135,0:0,0,25,18
chr1	75198763	.	A	C	698.8	PASS	AC=2;AF=1;AN=2;DP=1735;FS=0;MQ=60;MQRankSum=-0.433;ReadPosRankSum=1.589;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2322,168,0:0,0,33,22
chr1	75199152	.	C	T	3618.33	PASS	AC=2;AF=1;AN=2;DP=5827;FS=0;MQ=60;MQRankSum=1.641;ReadPosRankSum=0.524;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4711,432,0:0,0,53,91
chr1	75199299	.	C	G	1253.73	PASS	AC=2;AF=0.692;AN=2;DP=1365;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1290,122,0:0,0,12,29
chr1	75214390	.	G	C	552.22	PASS	AC=2;AF=0.645;AN=2;DP=1619;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1944,192,0:0,0,41,23
chr1	75232213	.	G	A	167.85	PASS	AC=2;AF=0.673;AN=2;DP=305;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant23-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:189,18,0:0,0,4,2
chr1	75600506	.	ATT	A,AT,ATTTT	392.99	PASS	AC=0,0,2;AF=0.263,0.171,0.368;AN=2;DP=882;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:18:57:0,0,11,7
chr1	75602384	.	G	T	2626.13	PASS	AC=2;AF=0.609;AN=2;DP=2834;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4908,467,0:0,0,50,107
chr1	75603055	.	A	G	2827.66	PASS	AC=2;AF=1;AN=2;DP=3764;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2985,276,0:0,0,36,56
chr1	75603101	.	A	G	1217.7	PASS	AC=2;AF=0.609;AN=2;DP=1487;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2338,231,0:0,0,28,49
chr1	75603207	.	G	T	363.4	PASS	AC=2;AF=0.63;AN=2;DP=456;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:787,63,0:0,0,4,17
chr1	75614380	.	CT	C	750.98	PASS	AC=2;AF=0.763;AN=2;DP=2933;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,50:52:99:1268,119,0:2,0,17,33
chr1	75626420	.	A	T	2176.96	PASS	AC=2;AF=0.943;AN=2;DP=1979;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2218,170,0:0,0,51,6
chr1	75627328	.	C	T	1962.09	PASS	AC=2;AF=0.943;AN=2;DP=1910;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1729,138,0:0,0,8,38
chr1	75627354	.	C	CA,CAA	61.24	PASS	AC=1,1;AF=0.161,0.532;AN=2;DP=619;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:19:99:0,1,0,18
chr1	75670670	.	C	A	2618.44	PASS	AC=1;AF=0.567;AN=2;DP=3512;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant27-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:144,122:266:99:3207,0,3653:72,72,61,61
chr1	75670877	.	G	C	3374.82	PASS	AC=1;AF=0.607;AN=2;DP=5594;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,134:217:99:3478,0,1997:40,43,66,68
chr1	75670957	.	G	A	2385.39	PASS	AC=1;AF=0.556;AN=2;DP=1552;set=variant4-variant9-variant10-variant11-variant15-variant22-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:111,71:182:99:1586,0,2924:42,69,34,37
chr1	75671215	.	C	T	873.1	PASS	AC=1;AF=0.563;AN=2;DP=759;MQ=60;set=variant4-variant9-variant10-variant11-variant15-variant22-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1381,0,1242:25,21,30,21
chr1	75671687	.	T	C	5138.71	PASS	AC=1;AF=0.567;AN=2;DP=5882;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant27-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:224,231:455:99:5824,0,5602:111,113,113,118
chr1	75672134	.	T	C	1254.96	PASS	AC=1;AF=0.567;AN=2;DP=2128;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant27-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:82,100:182:99:2691,0,2254:45,37,51,49
chr1	75672376	.	A	G	2336.9	PASS	AC=1;AF=0.607;AN=2;DP=3791;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,62:173:99:1464,0,2805:46,65,24,38
chr1	75679569	.	C	CT,CTT	108.32	PASS	AC=0,1;AF=0.25,0.313;AN=2;DP=682;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant21-variant22-variant27-variant35-variant37-variant41-variant42	GT:DP:GQ:SB	0/2:49:99:17,21,5,6
chr1	75680545	.	T	G	1085.63	PASS	AC=1;AF=0.857;AN=2;DP=1204;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:262,0,689:8,16,3,8
chr1	75680565	.	G	A	1019.52	PASS	AC=1;AF=0.857;AN=2;DP=1006;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:180,0,641:5,16,3,6
chr1	75681351	.	A	T	981.97	PASS	AC=1;AF=0.857;AN=2;DP=811;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:436,0,815:21,1,12,1
chr1	75681511	.	T	C	4173.6	PASS	AC=1;AF=0.907;AN=2;DP=6078;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,78:176:99:1827,0,2390:40,58,33,45
chr1	75685643	.	T	C	281.6	PASS	AC=1;AF=0.645;AN=2;DP=683;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:432,0,541:1,14,0,12
chr1	75716925	.	C	T	754.59	PASS	AC=2;AF=0.75;AN=2;DP=3949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3371,316,0:0,0,37,69
chr1	75740845	.	A	G	724.18	PASS	AC=1;AF=0.586;AN=2;DP=1480;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,24:68:99:735,0,1163:17,27,6,18
chr1	75766186	.	G	A	205.42	PASS	AC=2;AF=0.697;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:418,36,0:0,0,9,3
chr1	75823084	.	C	T	365.08	PASS	AC=2;AF=0.988;AN=2;DP=762;FractionInformativeReads=1;MQ=60;MQRankSum=-1.264;ReadPosRankSum=-1.92;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1143,105,0:0,0,10,25
chr1	76143443	.	A	G	233.22	PASS	AC=1;AF=0.615;AN=2;DP=705;FractionInformativeReads=1;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:341,0,676:9,17,7,9
chr1	76143458	.	T	C	221.81	PASS	AC=1;AF=0.565;AN=2;DP=541;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:280,0,635:7,16,7,8
chr1	76143505	.	T	C	345.13	PASS	AC=2;AF=0.955;AN=2;DP=502;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:747,68,0:0,0,9,14
chr1	76190569	.	C	G	820.43	PASS	AC=1;AF=0.635;AN=2;DP=2733;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1654,0,1456:13,42,18,44
chr1	76194054	.	C	G	691.91	PASS	AC=1;AF=0.58;AN=2;DP=1419;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:845,0,753:17,12,21,16
chr1	76194229	.	GT	G	3235.25	PASS	AC=2;AF=1;AN=2;DP=3651;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2511,225,0:0,0,31,44
chr1	76194306	.	A	G	1137.78	PASS	AC=2;AF=0.943;AN=2;DP=781;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:721,51,0:0,0,1,16
chr1	76198436	.	T	C	894.23	PASS	AC=1;AF=0.615;AN=2;DP=1887;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,52:96:99:1421,0,1031:21,23,27,25
chr1	76198785	.	G	A	1387.49	PASS	AC=1;AF=0.615;AN=2;DP=3765;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,78:168:99:1730,0,2106:41,49,34,44
chr1	76199345	.	C	G	1383.3	PASS	AC=1;AF=0.615;AN=2;DP=2652;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,58:116:99:1376,0,1487:25,33,24,34
chr1	76205643	.	C	A	589.48	PASS	AC=1;AF=0.58;AN=2;DP=1718;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:1056,0,1062:28,16,29,11
chr1	76216330	.	T	C	125.93	PASS	AC=1;AF=0.563;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,153:0,4,0,6
chr1	76227022	.	A	G	1253.93	PASS	AC=1;AF=0.563;AN=2;DP=2208;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,63:107:99:1708,0,1145:16,28,22,41
chr1	76229326	.	T	C	400	PASS	AC=2;AF=0.744;AN=2;DP=717;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:1112,89,0:0,0,5,25
chr1	76234886	.	A	G	1056.39	PASS	AC=2;AF=0.955;AN=2;DP=1855;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1838,180,0:0,0,27,33
chr1	76235001	.	A	G	167.47	PASS	AC=1;AF=0.565;AN=2;DP=219;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:179,0,314:0,8,0,5
chr1	76251746	.	T	C	597.25	PASS	AC=1;AF=0.724;AN=2;DP=1067;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:710,0,764:19,5,18,5
chr1	76252011	.	G	A	2043.55	PASS	AC=1;AF=0.718;AN=2;DP=8543;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:154,162:316:99:3975,0,3743:63,91,65,97
chr1	76252687	.	T	C	778.03	PASS	AC=1;AF=0.718;AN=2;DP=1537;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:462,0,665:16,10,12,8
chr1	76255228	.	G	A	405.76	PASS	AC=1;AF=0.563;AN=2;DP=678;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:469,0,690:5,18,2,13
chr1	76257074	.	AT	ATT,A	762.4	PASS	AC=1,0;AF=0.548,0.024;AN=2;DP=2048;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant24-variant27-variant28-variant29-filterInvariant31-variant35-variant36-variant37-variant38-variant39-variant44	GT:DP:GQ:SB	0/1:77:99:22,29,12,14
chr1	76257892	.	A	T	2559.55	PASS	AC=2;AF=0.943;AN=2;DP=3603;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3615,360,0:0,0,69,51
chr1	76260837	.	C	T	1243.09	PASS	AC=1;AF=0.563;AN=2;DP=1710;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,46:95:99:1429,0,1709:13,36,15,31
chr1	76269372	.	T	C	303.56	PASS	AC=1;AF=0.645;AN=2;DP=692;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:366,0,264:7,2,10,1
chr1	76272837	.	A	G	750.9	PASS	AC=1;AF=0.55;AN=2;DP=1205;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,34:80:99:783,0,1176:17,29,13,21
chr1	76276353	.	T	C	403.48	PASS	AC=1;AF=0.563;AN=2;DP=773;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:532,0,665:17,6,15,7
chr1	76280543	.	A	G	161.28	PASS	AC=2;AF=0.905;AN=2;DP=264;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:288,30,0:0,0,6,4
chr1	76333163	.	T	G	764.13	PASS	AC=1;AF=0.563;AN=2;DP=1504;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:981,0,724:17,15,24,18
chr1	76344011	.	C	A	2054.29	PASS	AC=1;AF=0.756;AN=2;DP=2784;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1258,0,801:10,22,12,31
chr1	76344705	.	T	C	985.85	PASS	AC=1;AF=0.575;AN=2;DP=2054;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,52:109:99:2042,0,3108:32,25,31,21
chr1	76344711	.	A	T	3982.71	PASS	AC=1;AF=0.756;AN=2;DP=4172;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,56:116:99:2115,0,3181:34,26,33,23
chr1	76344920	.	G	A	670.76	PASS	AC=2;AF=1;AN=2;DP=602;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:653,48,0:0,0,1,15
chr1	76345640	.	G	T	625.87	PASS	AC=1;AF=0.697;AN=2;DP=853;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:478,0,486:13,7,13,6
chr1	76345884	.	T	A	212.07	PASS	AC=1;AF=0.575;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:332,0,304:4,8,3,9
chr1	76346920	.	C	CAT	4262.9	PASS	AC=2;AF=1;AN=2;DP=3567;FS=0;MQ=60;MQRankSum=0.137;ReadPosRankSum=-2.254;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:3480,238,0:0,0,58,17
chr1	76365191	.	C	A	240.88	PASS	AC=1;AF=0.536;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant10-variant11-variant15-variant18-variant24-variant27-variant29-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:423,0,210:5,4,11,4
chr1	76378360	.	T	TA	120.9	PASS	AC=1;AF=0.579;AN=2;DP=318;set=variant6-variant9-variant10-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:194,0,317:7,4,4,3
chr1	76378361	.	T	A	240.04	PASS	AC=1;AF=0.558;AN=2;DP=579;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant15-variant16-variant17-filterInvariant22-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:296,0,322:7,3,8,4
chr1	76378362	.	T	A	126.77	PASS	AC=1;AF=0.6;AN=2;DP=354;set=variant6-variant9-variant10-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:257,0,296:8,4,7,3
chr1	76378363	.	T	A	239.97	PASS	AC=1;AF=0.529;AN=2;DP=381;set=variant-variant2-variant3-variant5-variant6-variant9-variant15-variant22-variant24-variant28-variant29-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:296,0,257:8,3,8,4
chr1	76378364	.	T	A	228.78	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant26-variant31	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:257,0,296:8,4,8,3
chr1	76387748	.	T	A	429.93	PASS	AC=1;AF=0.575;AN=2;DP=753;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:328,0,624:15,6,12,4
chr1	76397972	.	C	T	2883.09	PASS	AC=1;AF=0.563;AN=2;DP=4408;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,114:236:99:2653,0,3345:69,53,60,54
chr1	76398249	.	A	T	206.22	PASS	AC=1;AF=0.575;AN=2;DP=242;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:124,0,398:0,10,0,4
chr1	76608491	.	T	C	886.36	PASS	AC=1;AF=0.587;AN=2;DP=940;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant33-variant34-variant36-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:380,0,700:18,11,10,10
chr1	76608532	.	T	G	1060.31	PASS	AC=1;AF=0.577;AN=2;DP=824;MQ=60;set=variant2-variant6-variant9-variant12-variant15-variant17-variant23-variant26-variant27-variant33-variant34-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,47:89:99:1128,0,950:26,16,27,20
chr1	76608777	.	C	T	417.52	PASS	AC=1;AF=0.708;AN=2;DP=503;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:347,0,335:0,9,2,9
chr1	76771475	.	G	T	443.17	PASS	AC=2;AF=0.813;AN=2;DP=2667;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2654,249,0:0,0,56,27
chr1	76773440	.	T	G	100.46	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant17-variant19-variant21-variant26-variant28-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:50:330,0,50:2,1,8,4
chr1	77093010	.	C	T	1096.77	PASS	AC=1;AF=0.615;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,14:44:99:493,0,1792:22,8,12,2
chr1	77093011	.	T	G	1096.77	PASS	AC=1;AF=0.615;AN=2;DP=900;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,14:44:99:493,0,1792:22,8,12,2
chr1	77093180	.	C	A	4268.09	PASS	AC=1;AF=0.615;AN=2;DP=4192;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,90:189:99:2139,0,2454:42,57,44,46
chr1	77094242	.	G	A	79.49	PASS	AC=1;AF=0.542;AN=2;DP=91;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant20-variant22-variant26-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:71:169,0,71:2,0,5,0
chr1	77094985	.	C	G	5440.92	PASS	AC=1;AF=0.615;AN=2;DP=3698;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,82:160:99:2320,0,2045:47,31,55,27
chr1	77095009	.	C	A	2665.62	PASS	AC=1;AF=0.563;AN=2;DP=2835;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,113:215:99:2929,0,2637:64,38,73,40
chr1	77095084	.	G	A	4562.63	PASS	AC=1;AF=0.563;AN=2;DP=4442;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:188,153:341:99:3736,0,4868:105,83,83,70
chr1	77095355	.	A	G	4574.35	PASS	AC=1;AF=0.563;AN=2;DP=5148;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:214,159:373:99:3659,0,5084:102,112,75,84
chr1	77095600	.	G	A	2457.53	PASS	AC=1;AF=0.563;AN=2;DP=2474;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,84:181:99:1951,0,2694:60,37,44,40
chr1	77096622	.	C	T	5324.52	PASS	AC=1;AF=0.536;AN=2;DP=5166;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:231,207:438:99:4868,0,5620:112,119,97,110
chr1	77096987	.	CAA	C,CA,CAAA	1869.49	PASS	AC=1,0,0;AF=0.483,0.117,0.017;AN=2;DP=2054;set=variant-variant3-variant4-variant5-filterInvariant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant34-variant38-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:55:99:17,4,21,13
chr1	77097228	.	A	G	5406.71	PASS	AC=1;AF=0.563;AN=2;DP=6032;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:166,220:386:99:5377,0,3658:80,86,106,114
chr1	77097362	.	A	C	2160.9	PASS	AC=1;AF=0.563;AN=2;DP=1973;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,69:152:99:2018,0,2033:35,48,20,49
chr1	77097403	.	G	A	1671.43	PASS	AC=1;AF=0.563;AN=2;DP=1297;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,43:112:99:1628,0,2733:28,41,14,29
chr1	77097406	.	C	G	1674.44	PASS	AC=1;AF=0.563;AN=2;DP=1278;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,45:113:99:1628,0,2733:27,41,16,29
chr1	77097491	.	C	T	734.67	PASS	AC=1;AF=0.563;AN=2;DP=970;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,43:89:99:1104,0,1128:21,25,22,21
chr1	77097555	.	T	A	1348.15	PASS	AC=1;AF=0.563;AN=2;DP=1188;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,59:100:99:1622,0,1086:27,14,34,25
chr1	77097790	.	A	G	3066.33	PASS	AC=1;AF=0.615;AN=2;DP=2564;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,55:109:99:1454,0,1443:27,27,31,24
chr1	77098517	.	T	TTAA	8221.99	PASS	AC=1;AF=0.536;AN=2;DP=5524;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:204,255:459:99:10111,0,7759:105,99,138,117
chr1	77098562	.	A	G	12223.8	PASS	AC=2;AF=0.977;AN=2;DP=17186;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,464:464:99:13858,1386,0:0,0,228,236
chr1	77098710	.	T	C	2512.65	PASS	AC=1;AF=0.536;AN=2;DP=1967;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:91,65:156:99:1852,0,2511:30,61,18,47
chr1	77098729	.	G	T	3408.85	PASS	AC=1;AF=0.615;AN=2;DP=2809;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1479,0,1780:24,44,16,35
chr1	77099075	.	A	G	5237.86	PASS	AC=1;AF=0.563;AN=2;DP=5863;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:248,201:449:99:4836,0,6206:127,121,100,101
chr1	77099238	.	G	A	1908.42	PASS	AC=1;AF=0.536;AN=2;DP=1860;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:78,81:159:99:2276,0,2411:22,56,27,54
chr1	77099487	.	AT	A	3862.92	PASS	AC=1;AF=0.536;AN=2;DP=3711;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:152,104:256:99:2339,0,3664:98,54,68,36
chr1	77099691	.	G	A	20631.3	PASS	AC=1;AF=0.615;AN=2;DP=13518;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:309,297:606:99:7805,0,7979:134,175,132,165
chr1	77100189	.	G	A	3338.9	PASS	AC=1;AF=0.536;AN=2;DP=3291;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:126,133:259:99:3484,0,3370:47,79,59,74
chr1	77100207	.	G	A	3224.73	PASS	AC=1;AF=0.563;AN=2;DP=3569;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant29-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:123,132:255:99:3418,0,3223:50,73,57,75
chr1	77166140	.	A	G	1317.43	PASS	AC=1;AF=0.536;AN=2;DP=794;FractionInformativeReads=1;set=variant2-variant3-variant8-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant26-variant32-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:943,0,855:20,9,23,9
chr1	77530101	.	TAC	T	1192.19	PASS	AC=1;AF=0.706;AN=2;DP=1381;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:770,0,795:18,9,17,9
chr1	77555481	.	C	T	1094.39	PASS	AC=1;AF=0.77;AN=2;DP=4190;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,66:151:99:1629,0,2424:38,47,30,36
chr1	77556766	.	T	A	2602.95	PASS	AC=1;AF=0.589;AN=2;DP=5531;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:101,101:202:99:2044,0,2466:59,42,58,43
chr1	77620035	.	T	C	9960.51	PASS	AC=2;AF=1;AN=2;DP=13635;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,390:390:99:11387,1167,0:0,0,184,206
chr1	77627096	.	G	A	1673.78	PASS	AC=2;AF=1;AN=2;DP=2297;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2291,195,0:0,0,20,45
chr1	77634948	.	G	A	2024.33	PASS	AC=2;AF=1;AN=2;DP=3376;FS=0;MQ=60;MQRankSum=0.231;ReadPosRankSum=-0.52;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2424,237,0:0,0,50,29
chr1	77747982	.	G	A	3415.29	PASS	AC=1;AF=0.5;AN=2;DP=874;MQ=60;set=variant15-variant30-variant31	GT:AD:DP:GQ:PL:SB	0/1:176,152:328:99:3444,0,4020:93,83,83,69
chr1	77748786	.	A	G	2926.04	PASS	AC=1;AF=0.63;AN=2;DP=3110;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,58:103:99:1425,0,1000:20,25,29,29
chr1	77752549	.	A	T	97.27	PASS	AC=1;AF=0.5;AN=2;DP=24;FractionInformativeReads=1;MQ=60;set=variant15-variant31	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:126,0,195:5,1,3,2
chr1	77763071	.	A	G	575.17	PASS	AC=2;AF=0.881;AN=2;DP=1502;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1721,170,0:0,0,38,19
chr1	77763542	.	G	A	2505.3	PASS	AC=2;AF=1;AN=2;DP=3408;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,107:108:99:3342,314,0:0,1,43,64
chr1	77883412	.	C	T	380.4	PASS	AC=1;AF=0.563;AN=2;DP=931;MQ=60;set=variant2-variant8-variant9-variant10-variant13-variant15-variant19-variant21-variant24-variant25-variant28-variant29-variant33-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:763,0,1077:10,28,7,22
chr1	77948698	.	AAAAAAAAAAAAAAAAAAAAAAAAAAAAG	A	306.35	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=4.018;FractionInformativeReads=1;MQ=60;MQRankSum=0.249;QD=14.59;ReadPosRankSum=3.447;SOR=1.37;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:344,0,380:4,5,8,4
chr1	77949123	.	G	A	838.36	PASS	AC=1;AF=0.587;AN=2;DP=814;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant31-variant32-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:405,0,1407:7,18,3,9
chr1	77949129	.	A	T	838.36	PASS	AC=1;AF=0.587;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant31-variant32-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:375,0,1322:6,16,2,8
chr1	77952110	.	G	A	303.41	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.475;FractionInformativeReads=1;MQ=60;MQRankSum=0.665;QD=9.48;ReadPosRankSum=-0.817;SOR=0.412;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:332,0,469:5,13,5,9
chr1	77987814	.	G	A	143	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:105,0,234:0,6,0,3
chr1	77998084	.	G	A	118.45	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.447;QD=11.85;ReadPosRankSum=0.365;SOR=1.329;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:147,0,209:1,5,0,4
chr1	78001764	.	CT	C	36.16	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=252;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,12:72:73:73,0,1276:22,38,6,6
chr1	78001881	.	T	C	672.23	PASS	AC=2;AF=0.989;AN=2;DP=922;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.52;ReadPosRankSum=-1.283;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:674,66,0:0,0,7,15
chr1	78001947	.	A	G	367.63	PASS	AC=2;AF=0.853;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:338,27,0:0,0,2,7
chr1	78024284	.	T	C	1566.53	PASS	AC=2;AF=0.816;AN=2;DP=1570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1535,150,0:0,0,33,17
chr1	78024345	.	C	CTAT	3973.66	PASS	AC=2;AF=0.816;AN=2;DP=2848;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3084,208,0:0,0,36,32
chr1	78024602	.	A	G	3079.28	PASS	AC=2;AF=0.829;AN=2;DP=4546;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4167,371,0:0,0,69,55
chr1	78025047	.	G	A	7309.15	PASS	AC=2;AF=0.816;AN=2;DP=6517;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:9760,659,0:0,0,104,115
chr1	78025049	.	C	T	7309.15	PASS	AC=2;AF=0.816;AN=2;DP=6527;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:9760,659,0:0,0,102,113
chr1	78025230	.	GTATT	G	3492.33	PASS	AC=2;AF=0.811;AN=2;DP=3476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:5676,388,0:0,0,58,71
chr1	78025454	.	G	T	14457.7	PASS	AC=2;AF=0.816;AN=2;DP=11395;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,346:346:99:12894,1056,0:0,0,186,160
chr1	78025459	.	T	C	5214.12	PASS	AC=1;AF=0.605;AN=2;DP=5694;MQ=60;set=variant-variant3-variant5-variant12-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:184,180:364:99:4556,0,4202:94,90,100,80
chr1	78025551	.	C	T	8166.95	PASS	AC=2;AF=0.811;AN=2;DP=8440;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,252:252:99:7801,755,0:0,0,92,160
chr1	78031994	.	A	G	414.75	PASS	AC=2;AF=0.829;AN=2;DP=421;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:446,30,0:0,0,0,10
chr1	78033981	.	AAAATG	A	724.84	PASS	AC=2;AF=0.814;AN=2;DP=765;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1313,90,0:0,0,19,11
chr1	78034156	.	CAAAA	CA,CAAA,CAA,C	106.23	PASS	AC=1,0,0,0;AF=0.313,0.094,0.25,0.031;AN=2;DP=235;set=variant-variant7-variant9-variant14-variant15-variant16-variant17-variant20-variant25-variant27-variant28-variant30-variant36-variant38-variant39-variant44	GT:DP:GQ:SB	0/1:12:52:0,3,2,7
chr1	78045369	.	G	A	111.22	PASS	AC=2;AF=0.828;AN=2;DP=347;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,0,6
chr1	78148103	.	G	A	175.63	PASS	AC=1;AF=0.5;AN=2;DP=21;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:279,0,108:3,1,7,0
chr1	78163080	.	C	T	2101.2	PASS	AC=1;AF=0.5;AN=2;DP=300;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:58,70:128:99:2108,0,1477:22,36,22,48
chr1	78177213	.	TACACAC	TACAC,TAC,TACACACAC,T	1561.22	PASS	AC=1,1,0,0;AF=0.795,0.08,0.034,0.023;AN=2;DP=2458;set=Intersection	GT:DP:GQ:SB	2/1:66:99:1,2,45,18
chr1	78178976	.	T	A	772.61	PASS	AC=1;AF=0.674;AN=2;DP=1529;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,44:87:99:1005,0,1014:17,26,17,27
chr1	78179032	.	AT	A	202.96	PASS	AC=1;AF=0.611;AN=2;DP=485;MQ=60;set=variant-variant3-variant12-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:229,0,369:4,12,3,8
chr1	78183670	.	G	T	2246.73	PASS	AC=1;AF=0.5;AN=2;DP=363;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:105,68:173:99:1554,0,2479:46,59,26,42
chr1	78184345	.	A	C	420.27	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:379,0,431:7,12,7,10
chr1	78188870	.	CA	C	485.49	PASS	AC=1;AF=0.5;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:251,0,428:13,1,8,1
chr1	78196274	.	AAAG	A	539.47	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:402,0,653:11,4,10,1
chr1	78200005	.	T	C	277.1	PASS	AC=1;AF=0.708;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,19:21:29:497,0,29:2,0,11,8
chr1	78201745	.	G	T	718.14	PASS	AC=1;AF=0.667;AN=2;DP=2337;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,60:109:99:1393,0,1070:23,26,29,31
chr1	78281002	.	T	C	402.67	PASS	AC=2;AF=0.806;AN=2;DP=643;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1028,90,0:0,0,8,22
chr1	78325622	.	T	A	171.67	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:76:76,0,205:4,1,3,0
chr1	78382038	.	A	C	472.57	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:603,0,671:5,18,4,16
chr1	78383160	.	AT	A	148.75	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant21	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:49:81,0,49:2,0,3,0
chr1	78383467	.	G	A	198.37	PASS	AC=2;AF=0.869;AN=2;DP=745;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:845,81,0:0,0,10,17
chr1	78390046	.	C	CA,CAA	192.01	PASS	AC=1,0;AF=0.825,0.013;AN=2;DP=1737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:33:99:9,10,6,8
chr1	78390161	.	G	A	245.91	PASS	AC=1;AF=0.5;AN=2;DP=61;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:111,0,111:1,3,0,3
chr1	78399207	.	C	G	162.14	PASS	AC=1;AF=0.882;AN=2;DP=834;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:330,0,723:4,14,4,7
chr1	78399212	.	T	C	541.31	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:526,0,430:4,8,4,14
chr1	78414310	.	CA	C,CAA	383.11	PASS	AC=0,1;AF=0.352,0.148;AN=2;DP=9486;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/2:200:99:88,26,59,27
chr1	78426284	.	T	C	135.18	PASS	AC=1;AF=0.75;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant15-variant21-variant25-variant29-variant30-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:141,0,206:2,5,1,4
chr1	78429215	.	A	G	483.02	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:423,0,420:11,6,11,8
chr1	78430689	.	A	AG	2765.93	PASS	AC=2;AF=1;AN=2;DP=3589;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3659,303,0:0,0,58,43
chr1	78432503	.	G	C	1132.21	PASS	AC=1;AF=0.7;AN=2;DP=698;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant15-variant21-variant25-variant29-variant30-variant32-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,30:49:99:737,0,458:9,10,13,17
chr1	78433801	.	T	C	930.84	PASS	AC=1;AF=0.5;AN=2;DP=478;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,52:88:99:1352,0,806:22,14,33,19
chr1	78444734	.	C	T	1162.34	PASS	AC=1;AF=0.5;AN=2;DP=171;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1036,0,1111:18,25,19,24
chr1	78444764	.	C	CGGCCG	1063.19	PASS	AC=1;AF=0.545;AN=2;DP=664;MQ=60;set=variant-variant3-variant14-variant15-variant17-variant20-variant22-variant23-variant28-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,32:64:99:1258,0,1187:15,17,14,18
chr1	78471060	.	T	TC	258.63	PASS	AC=2;AF=0.897;AN=2;DP=342;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:370,30,0:0,0,2,8
chr1	78478675	.	G	A	642.14	PASS	AC=1;AF=0.882;AN=2;DP=1296;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,14:48:99:350,0,1016:25,9,11,3
chr1	78481640	.	G	A	642.32	PASS	AC=1;AF=0.882;AN=2;DP=1996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,31:76:99:770,0,1227:32,13,22,9
chr1	78483422	.	T	A	3114.26	PASS	AC=1;AF=0.882;AN=2;DP=8642;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,155:257:99:3783,0,2249:47,55,71,84
chr1	78483452	.	C	CT,CTT	1096.43	PASS	AC=1,0;AF=0.464,0.036;AN=2;DP=7713;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:170:99:29,48,36,57
chr1	78512053	.	CCGCCGCGCCG	C	1379.61	PASS	AC=1;AF=0.5;AN=2;DP=404;MQ=60;set=variant3-variant13-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,57:97:99:2179,0,2128:16,24,23,34
chr1	78578177	.	T	C	2425.27	PASS	AC=1;AF=0.595;AN=2;DP=3557;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant15-variant16-variant19-variant21-variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:107,113:220:99:2781,0,2462:46,61,49,64
chr1	78578266	.	C	T	1044.76	PASS	AC=1;AF=0.571;AN=2;DP=430;MQ=60;set=variant3-variant15-variant21-variant30-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:1119,0,1043:13,27,10,29
chr1	78602292	.	CTTTTT	CTTTT,CTTTTTTT,C,CT,CTTTTTT,CTTTTTTTT,CTTT,CTT	532.37	PASS	AC=0,1,0,0,0,0,0,0;AF=0.056,0.125,0.111,0.125,0.042,0.014,0.069,0.028;AN=2;DP=4313;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:60:99:11,24,9,16
chr1	78602461	.	A	T	5476.15	PASS	AC=2;AF=1;AN=2;DP=7850;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,238:238:99:7429,711,0:0,0,143,95
chr1	78603279	.	A	G	10334.3	PASS	AC=1;AF=0.73;AN=2;DP=10312;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,166:322:99:4566,0,4113:70,86,73,93
chr1	78603383	.	G	A	9199.09	PASS	AC=1;AF=0.849;AN=2;DP=10058;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,153:297:99:3707,0,3505:68,76,69,84
chr1	78603463	.	T	C	3270.62	PASS	AC=1;AF=0.648;AN=2;DP=7417;MQ=60;set=variant2-variant3-variant5-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,161:328:99:4240,0,4362:82,85,82,79
chr1	78769675	.	A	T	237.93	PASS	AC=1;AF=0.5;AN=2;DP=96;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant13-variant14-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:187,0,236:2,6,1,5
chr1	78958277	.	C	T	462.39	PASS	AC=1;AF=0.545;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant13-variant15-variant17-variant21-variant25-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:693,0,676:17,7,18,5
chr1	78963437	.	G	A	238.28	PASS	AC=1;AF=0.529;AN=2;DP=801;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant13-variant15-variant17-variant19-variant21-variant25-variant29-variant30-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:453,0,725:18,7,13,5
chr1	79001967	.	A	AC	469.67	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant38	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:507,0,429:11,2,15,0
chr1	79002544	.	C	T	5805.7	PASS	AC=2;AF=0.542;AN=2;DP=4891;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,445:445:99:13607,1330,0:0,0,221,224
chr1	79002589	.	A	G	5252.97	PASS	AC=2;AF=0.545;AN=2;DP=4821;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,472:472:99:14556,1414,0:0,0,226,246
chr1	79002962	.	C	T	3409.57	PASS	AC=2;AF=0.545;AN=2;DP=3124;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:1,310:311:99:9260,885,0:1,0,158,152
chr1	79003258	.	A	C	3442.76	PASS	AC=2;AF=0.545;AN=2;DP=3178;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,355:355:99:10720,1064,0:0,0,185,170
chr1	79003355	.	A	G	3278.83	PASS	AC=2;AF=0.542;AN=2;DP=3262;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:1,317:318:99:9785,920,0:1,0,147,170
chr1	79003523	.	C	G	3218.5	PASS	AC=2;AF=0.55;AN=2;DP=2144;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,299:299:99:9537,897,0:0,0,155,144
chr1	79004217	.	TA	TAAA,T,TAA	356.58	PASS	AC=2,0,0;AF=0.429,0.107,0.036;AN=2;DP=936;set=variant-variant3-variant7-filterInvariant12-variant13-variant15-variant17-variant18-variant25-variant29-variant31-variant32-variant33-variant38	GT:DP:GQ:SB	1/1:66:99:0,0,43,23
chr1	79004474	.	C	T	3015.09	PASS	AC=2;AF=0.545;AN=2;DP=2314;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,265:265:99:9006,793,0:0,0,153,112
chr1	79004512	.	T	G	4438.19	PASS	AC=2;AF=0.545;AN=2;DP=3075;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,361:361:99:11442,1081,0:0,0,212,149
chr1	79004748	.	A	AAGAT	6220.07	PASS	AC=2;AF=0.542;AN=2;DP=3900;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,330:330:99:15035,1012,0:0,0,175,155
chr1	79004920	.	T	C	5328.93	PASS	AC=2;AF=0.545;AN=2;DP=4157;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,505:505:99:16259,1503,0:0,0,267,238
chr1	79005484	.	G	A	363.73	PASS	AC=2;AF=0.545;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant18-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1336,111,0:0,0,6,31
chr1	79005551	.	T	C	82.24	PASS	AC=2;AF=0.6;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant13-variant15-variant17-variant25-variant29-variant32-variant33-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:428,30,0:0,0,0,10
chr1	79094593	.	A	G	1392.26	PASS	AC=2;AF=0.977;AN=2;DP=2705;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,79:80:99:2406,206,0:1,0,35,44
chr1	79106967	.	C	T	1548.59	PASS	AC=1;AF=0.675;AN=2;DP=747;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant19-variant23-variant25-variant27-variant32-variant35-variant36-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:525,0,652:4,16,3,14
chr1	79355596	.	A	G	4165.27	PASS	AC=2;AF=0.786;AN=2;DP=5121;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4717,455,0:0,0,89,63
chr1	79355911	.	A	C	832.82	PASS	AC=2;AF=1;AN=2;DP=1524;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1472,138,0:0,0,25,21
chr1	79358743	.	CA	C,CAA,CAAA,CAAAA	531.01	PASS	AC=0,1,0,0;AF=0.129,0.226,0.145,0.065;AN=2;DP=784;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant27-variant30-variant31-variant32-filterInvariant33-variant35-variant36-variant37-variant39-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:27:99:5,4,14,4
chr1	79383300	.	CA	C	469.04	PASS	AC=2;AF=0.703;AN=2;DP=1114;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1402,114,0:0,0,26,12
chr1	79383458	.	A	T	1388.73	PASS	AC=2;AF=0.743;AN=2;DP=3347;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,88:89:99:2719,256,0:0,1,44,44
chr1	79392756	.	C	A	849.37	PASS	AC=2;AF=0.743;AN=2;DP=2874;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2649,252,0:0,0,26,58
chr1	79401927	.	A	G	940.12	PASS	AC=2;AF=0.743;AN=2;DP=1790;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1513,156,0:0,0,31,21
chr1	79403751	.	T	G	1553.34	PASS	AC=2;AF=0.714;AN=2;DP=4303;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3619,374,0:0,0,57,68
chr1	79411888	.	T	C	867.81	PASS	AC=2;AF=0.726;AN=2;DP=593;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:478,36,0:0,0,11,1
chr1	81910596	.	A	G	1852.49	PASS	AC=1;AF=0.571;AN=2;DP=772;MQ=60;set=variant3-variant5-variant6-variant13-variant15-variant19-variant20-variant26-variant28-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:1023,0,959:26,2,27,6
chr1	81910642	.	T	C	1695.03	PASS	AC=1;AF=0.5;AN=2;DP=551;FractionInformativeReads=1;set=variant5-variant6-variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,80:160:99:2091,0,2146:53,27,54,26
chr1	81967495	.	A	AGC	178.56	PASS	AC=1;AF=0.5;AN=2;DP=1069;set=variant-variant4-variant5-variant6-variant11-variant13-variant15-variant22-variant24-variant26-variant29-variant31-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:1668,0,3256:20,19,24,17
chr1	81967496	.	A	AGCAGCAG,AGCAGCAGCAG,AGCAG,AG	178.56	PASS	AC=0,0,1,0;AF=0.25,0.031,0.156,0.063;AN=2;DP=1068;set=variant-variant4-variant5-variant6-variant11-variant13-variant15-variant22-variant24-variant26-variant29-variant31-variant36-variant37-variant38-variant42	GT:DP:GQ:SB	0/3:82:99:20,19,25,18
chr1	81967508	.	A	G	190.59	PASS	AC=1;AF=0.5;AN=2;DP=1163;set=variant-variant4-variant5-variant6-variant11-variant13-variant15-variant19-variant22-variant24-variant26-variant29-variant31-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,45:88:99:1721,0,3343:22,21,24,21
chr1	81969071	.	A	T	1446.26	PASS	AC=1;AF=0.5;AN=2;DP=2758;set=variant-variant2-variant4-variant5-variant6-variant11-variant13-variant15-variant19-variant22-variant24-variant26-variant29-variant31-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,96:173:99:2448,0,1989:39,38,46,50
chr1	81969284	.	G	T	576.4	PASS	AC=1;AF=0.5;AN=2;DP=751;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant11-variant13-variant15-variant19-variant22-variant24-variant26-variant29-variant31-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,36:54:99:924,0,497:6,12,13,23
chr1	81970883	.	CCACACA	CCA,CCACACACA,CCACA,C	124.73	PASS	AC=1,0,0,0;AF=0.286,0.095,0.143,0.071;AN=2;DP=205;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant31-variant35-variant37-variant39-variant41	GT:DP:GQ:SB	0/1:5:37:1,0,2,2
chr1	82302600	.	T	C	6654.63	PASS	AC=1;AF=0.726;AN=2;DP=11435;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:257,231:488:99:5247,0,6011:124,133,105,126
chr1	82402364	.	TAATC	T	502.54	PASS	AC=1;AF=0.556;AN=2;DP=916;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,25:43:99:996,0,962:15,3,17,8
chr1	82409587	.	T	C	174.83	PASS	AC=1;AF=0.5;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant-variant14-variant15-variant18-variant24-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:654,0,353:1,9,2,17
chr1	82415814	.	T	C	1316.62	PASS	AC=2;AF=1;AN=2;DP=1907;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2436,207,0:0,0,52,17
chr1	82416220	.	G	A	265.16	PASS	AC=1;AF=0.707;AN=2;DP=1181;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:758,0,532:7,14,2,21
chr1	82421596	.	C	T	2985.77	PASS	AC=2;AF=1;AN=2;DP=4861;FS=0;MQ=60;MQRankSum=-0.763;ReadPosRankSum=-0.587;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3713,351,0:0,0,69,48
chr1	82433929	.	A	T	600.35	PASS	AC=1;AF=0.5;AN=2;DP=366;MQ=60;set=variant-variant14-variant15-variant18-variant24-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,50:81:99:1170,0,826:8,23,18,32
chr1	82437670	.	ATTTGT	A	442.16	PASS	AC=1;AF=0.563;AN=2;DP=556;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:711,0,1463:3,12,5,13
chr1	82437682	.	G	A	454.14	PASS	AC=1;AF=0.563;AN=2;DP=469;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:714,0,1430:2,11,5,13
chr1	82456930	.	T	G	792.95	PASS	AC=1;AF=0.5;AN=2;DP=378;FractionInformativeReads=1;set=variant-variant14-variant15-variant18-variant24-variant28-variant30-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:653,0,1042:24,7,15,5
chr1	82457662	.	G	A	6658.85	PASS	AC=2;AF=1;AN=2;DP=8855;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:7067,687,0:0,0,110,119
chr1	82457998	.	G	T	4103.14	PASS	AC=1;AF=0.5;AN=2;DP=332;FS=4.332;FractionInformativeReads=1;MQ=60;MQRankSum=3.42;QD=12.36;ReadPosRankSum=-1.513;SOR=0.506;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:160,172:332:99:4131,0,3918:102,58,101,71
chr1	82459781	.	C	A	704.47	PASS	AC=1;AF=0.5;AN=2;DP=584;MQ=60;set=variant-variant14-variant15-variant18-variant24-variant28-variant30-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:954,0,778:15,17,12,25
chr1	84330635	.	CGTGT	CGTGTGTGT,CGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGT,C,CGTGTGTGTGTGT,CGT,CGTGTGTGTGTGTGTGT	157.51	PASS	AC=0,0,0,1,0,0,1,0,0;AF=0.163,0.063,0.013,0.113,0.138,0.038,0.163,0.05,0.05;AN=2;DP=890;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/7:19:76:0,0,17,2
chr1	84331981	.	A	G	575.49	PASS	AC=2;AF=0.649;AN=2;DP=2562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2880,284,0:0,0,52,43
chr1	84332235	.	A	G	4149.43	PASS	AC=2;AF=0.829;AN=2;DP=13511;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,411:411:99:12863,1232,0:0,0,218,193
chr1	84333213	.	T	TTG,TTGTG	2079.08	PASS	AC=1,0;AF=0.618,0.013;AN=2;DP=8077;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:161:77:10,8,53,90
chr1	84333301	.	G	A	2479.7	PASS	AC=2;AF=0.645;AN=2;DP=4601;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:7766,535,0:0,0,83,91
chr1	84333310	.	C	T	2631.03	PASS	AC=2;AF=0.645;AN=2;DP=4668;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:7960,561,0:0,0,90,95
chr1	84355734	.	AAGAACTTCAAGGAT	A	670.65	PASS	AC=2;AF=0.645;AN=2;DP=1648;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2971,199,0:0,0,27,39
chr1	84383079	.	G	A	811.73	PASS	AC=2;AF=0.65;AN=2;DP=1221;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1391,122,0:0,0,31,10
chr1	84464468	.	C	G	349.71	PASS	AC=2;AF=0.65;AN=2;DP=809;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1279,114,0:0,0,28,10
chr1	84640691	.	T	G	2281.91	PASS	AC=2;AF=0.989;AN=2;DP=2996;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:1978,226,0:0,0,37,39
chr1	84670439	.	A	AC	102.02	PASS	AC=1;AF=0.657;AN=2;DP=593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:352,0,370:3,4,5,4
chr1	84670457	.	A	G	76.67	PASS	AC=1;AF=0.662;AN=2;DP=607;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:309,0,391:4,5,5,3
chr1	84670584	.	T	A	373.02	PASS	AC=1;AF=0.657;AN=2;DP=1091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,15:45:99:362,0,796:19,11,10,5
chr1	84670816	.	A	C	4326.47	PASS	AC=1;AF=0.662;AN=2;DP=11253;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,219:406:99:5572,0,4527:99,88,121,98
chr1	84701251	.	T	C	14146.6	PASS	AC=2;AF=0.845;AN=2;DP=15778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,437:437:99:13888,1310,0:0,0,258,179
chr1	84791239	.	T	C	147.98	PASS	AC=2;AF=0.939;AN=2;DP=341;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:398,30,0:0,0,9,1
chr1	84810396	.	A	C	621.51	PASS	AC=2;AF=0.886;AN=2;DP=658;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:403,30,0:0,0,8,2
chr1	84810815	.	A	G	4618.04	PASS	AC=2;AF=0.977;AN=2;DP=5495;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4346,425,0:0,0,67,75
chr1	84816123	.	C	T	1237.72	PASS	AC=2;AF=0.966;AN=2;DP=2037;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1946,172,0:0,0,44,14
chr1	84816587	.	A	C	106.77	PASS	AC=2;AF=0.956;AN=2;DP=152;FS=0;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:82,6,0:0,0,0,2
chr1	84853957	.	A	T	941.07	PASS	AC=2;AF=0.977;AN=2;DP=2295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2149,220,0:0,0,46,28
chr1	84873835	.	A	G	1517.6	PASS	AC=1;AF=0.686;AN=2;DP=2079;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,39:68:99:997,0,804:22,7,26,13
chr1	84876711	.	C	CA	2151.3	PASS	AC=1;AF=0.686;AN=2;DP=2162;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:1151,0,911:6,21,10,23
chr1	84876731	.	T	G	1075.19	PASS	AC=1;AF=0.686;AN=2;DP=1551;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:710,0,717:3,19,3,18
chr1	84878228	.	C	T	1458.16	PASS	AC=1;AF=0.5;AN=2;DP=1015;MQ=60;set=variant2-variant5-variant6-variant7-variant13-variant15-variant23-variant25-variant30-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:62,36:98:99:871,0,1700:28,34,16,20
chr1	84878380	.	A	G	1010.64	PASS	AC=2;AF=1;AN=2;DP=2168;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1517,141,0:0,0,16,31
chr1	84880775	.	T	C	1010.5	PASS	AC=2;AF=1;AN=2;DP=1678;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1348,96,0:0,0,1,31
chr1	84944989	.	A	G	606.02	PASS	AC=1;AF=0.713;AN=2;DP=2255;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,39:76:99:875,0,892:16,21,19,20
chr1	84946486	.	G	A	100.68	PASS	AC=1;AF=0.5;AN=2;DP=125;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant16-variant28-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:372,0,472:11,6,9,3
chr1	84946745	.	C	T	904.12	PASS	AC=2;AF=0.989;AN=2;DP=1124;MQ=60;MQRankSum=-0.488;ReadPosRankSum=-0.387;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1073,90,0:0,0,6,24
chr1	84960864	.	A	G	1252.31	PASS	AC=1;AF=0.5;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant16-variant28-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:64,58:122:99:1444,0,1537:41,23,40,18
chr1	84963000	.	A	G	858.28	PASS	AC=1;AF=0.58;AN=2;DP=1121;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:633,0,954:23,8,17,7
chr1	84971926	.	G	A	3759.97	PASS	AC=1;AF=0.5;AN=2;DP=1674;MQ=60;set=variant9-variant15-variant16-variant28-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:186,126:312:99:3261,0,4959:75,111,45,81
chr1	84982259	.	T	C	475.99	PASS	AC=1;AF=0.577;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:504,0,382:7,10,7,12
chr1	84986213	.	AT	A	222.41	PASS	AC=2;AF=0.955;AN=2;DP=1071;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:860,90,0:0,0,24,6
chr1	85016177	.	A	G	808.73	PASS	AC=1;AF=0.6;AN=2;DP=1919;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:888,0,917:22,22,20,22
chr1	85031492	.	T	C	275.95	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant16-variant28-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:428,0,591:15,6,12,5
chr1	85040024	.	CAGCAGCGCT	C	1879.97	PASS	AC=1;AF=0.5;AN=2;DP=684;MQ=60;set=variant9-variant15-variant16-variant28-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:57,63:120:99:2229,0,3760:23,34,25,38
chr1	85040198	.	GGGGAGGGGC	G	41.27	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=0.8;MQ=60;MQRankSum=1.026;QD=8.25;ReadPosRankSum=1.026;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:79:79,0,140:1,1,1,1
chr1	85094292	.	TGC	T	328.42	PASS	AC=1;AF=0.674;AN=2;DP=1238;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:158,0,227:4,5,0,8
chr1	85094294	.	C	T	90.15	PASS	AC=1;AF=0.5;AN=2;DP=213;set=variant4-variant9-variant15-variant16-variant22-variant28-variant32	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:176,0,158:0,8,4,5
chr1	85109478	.	TATGA	T	3783.45	PASS	AC=1;AF=0.5;AN=2;DP=1377;MQ=60;set=variant9-variant15-variant16-variant30-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:159,131:290:99:5063,0,7739:81,78,66,65
chr1	85110325	.	C	A	1867.36	PASS	AC=2;AF=0.93;AN=2;DP=2587;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3346,276,0:0,0,62,30
chr1	85112180	.	A	G	666.79	PASS	AC=1;AF=0.5;AN=2;DP=417;MQ=60;set=variant9-variant15-variant16-variant30-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1135,0,1105:24,20,26,20
chr1	85113203	.	T	C	4118.59	PASS	AC=1;AF=0.881;AN=2;DP=5255;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,95:162:99:2728,0,1841:25,42,33,62
chr1	85113229	.	A	G	1543.68	PASS	AC=1;AF=0.688;AN=2;DP=4490;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,88:148:99:2303,0,1551:21,39,31,57
chr1	85115298	.	T	C	247.57	PASS	AC=1;AF=0.5;AN=2;DP=59;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant36	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:310,0,455:10,4,7,4
chr1	85115417	.	G	A	835.62	PASS	AC=1;AF=0.5;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant16-variant30-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:925,0,1437:33,25,28,15
chr1	85115852	.	G	T	10433.3	PASS	AC=1;AF=0.881;AN=2;DP=12804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,190:353:99:4908,0,4149:91,72,107,83
chr1	85121097	.	A	G	386.09	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:707,0,608:16,5,18,8
chr1	85121206	.	C	T	909.81	PASS	AC=1;AF=0.5;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant16-variant30-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:50,60:110:99:1422,0,1131:23,27,29,31
chr1	85121255	.	A	G	651.58	PASS	AC=1;AF=0.688;AN=2;DP=2523;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,35:91:99:853,0,1373:24,32,13,22
chr1	85128262	.	A	G	1127.31	PASS	AC=2;AF=0.774;AN=2;DP=2735;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,105:106:99:3427,276,0:1,0,29,76
chr1	85128280	.	T	C	1810.49	PASS	AC=2;AF=0.93;AN=2;DP=2175;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2818,243,0:0,0,18,63
chr1	85128305	.	G	C	582.67	PASS	AC=1;AF=0.688;AN=2;DP=1297;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:1012,0,580:3,16,5,26
chr1	85131641	.	G	C	43.71	PASS	AC=2;AF=0.803;AN=2;DP=342;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:132,9,0:0,0,3,0
chr1	85131982	.	T	G	435.13	PASS	AC=2;AF=0.93;AN=2;DP=601;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:754,69,0:0,0,6,17
chr1	85137218	.	C	G	207.73	PASS	AC=1;AF=0.5;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:236,0,431:2,12,3,7
chr1	85278106	.	CTTTTTT	CTTT,CTT,CTTTT,C	164.13	PASS	AC=0,1,0,0;AF=0.281,0.25,0.094,0.031;AN=2;DP=222;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant15-variant20-variant21-variant23-variant27-variant34-variant35-variant43	GT:DP:GQ:SB	0/2:11:99:2,4,1,4
chr1	85278665	.	A	G	772.18	PASS	AC=1;AF=0.762;AN=2;DP=1336;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:512,0,280:6,7,6,13
chr1	85278843	.	GACAC	GAC,G	348.14	PASS	AC=1,0;AF=0.733,0.017;AN=2;DP=642;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:16:99:11,0,5,0
chr1	85278952	.	T	TTAAG	9889.36	PASS	AC=1;AF=0.762;AN=2;DP=7813;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,97:217:99:3837,0,6315:79,41,62,35
chr1	85279077	.	C	T	12731.2	PASS	AC=1;AF=0.833;AN=2;DP=15838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:258,193:451:99:4391,0,6135:116,142,96,97
chr1	85331808	.	G	GAGA	2843.91	PASS	AC=2;AF=0.841;AN=2;DP=3291;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:4007,270,0:0,0,29,61
chr1	85331918	.	C	G	76.73	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;MQ=60;set=variant8-variant13-variant15-variant16-variant23	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:334,0,309:2,8,1,9
chr1	85391575	.	AT	A,ATT	36.32	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=235;set=variant-filterInvariant2-variant15-variant19-variant23-filterInvariant25-filterInvariant26-variant35-variant37-variant43	GT:DP:GQ:SB	0/2:23:99:5,10,2,6
chr1	85391899	.	A	G	1278.31	PASS	AC=2;AF=0.989;AN=2;DP=1706;FS=0;MQ=60;MQRankSum=-1.279;ReadPosRankSum=-3.767;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1167,93,0:0,0,24,7
chr1	85397286	.	G	C	849.67	PASS	AC=1;AF=0.611;AN=2;DP=1335;MQ=60;set=variant-variant3-variant6-variant9-variant15-variant20-variant21-variant24-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:947,0,1015:11,27,13,24
chr1	85412989	.	CCA	C,CCACACA,CCACA	67.91	PASS	AC=0,1,0;AF=0.318,0.136,0.091;AN=2;DP=352;MQ=60;set=variant-variant7-filterInvariant9-variant15-variant17-variant20-variant21-filterInvariant22-variant25-variant26-filterInvariant30	GT:DP:GQ:SB	0/2:30:99:7,9,5,9
chr1	85417779	.	G	A	158.16	PASS	AC=1;AF=0.719;AN=2;DP=394;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:138,0,271:6,1,4,1
chr1	85418307	.	C	G	340.83	PASS	AC=2;AF=0.719;AN=2;DP=1689;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1732,152,0:0,0,15,36
chr1	85422061	.	C	T	1894.6	PASS	AC=2;AF=0.688;AN=2;DP=4973;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5270,550,0:0,0,100,84
chr1	85424182	.	A	G	1120.24	PASS	AC=2;AF=0.646;AN=2;DP=1323;MQ=60;set=variant-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2370,224,0:0,0,46,29
chr1	85424479	.	A	G	46.72	PASS	AC=2;AF=0.711;AN=2;DP=111;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant24-variant26-variant31-variant33-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:288,21,0:0,0,0,7
chr1	85462582	.	C	G	1039.52	PASS	AC=2;AF=0.707;AN=2;DP=3153;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,143:147:99:4503,355,0:2,2,49,94
chr1	85462652	.	G	T	806.75	PASS	AC=2;AF=0.707;AN=2;DP=1621;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,70:72:99:2957,127,0:1,1,26,44
chr1	85462665	.	T	G	776.79	PASS	AC=2;AF=0.707;AN=2;DP=1440;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,65:67:99:2763,112,0:1,1,25,40
chr1	85462750	.	T	C	468.11	PASS	AC=2;AF=0.955;AN=2;DP=963;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:980,93,0:0,0,10,21
chr1	85464736	.	C	G	107.65	PASS	AC=1;AF=0.75;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant17-variant21-variant22-variant23-variant31-variant35-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:120,0,34:1,0,3,0
chr1	85464843	.	T	A	94.28	PASS	AC=2;AF=0.707;AN=2;DP=603;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:53:527,53,0:0,0,12,6
chr1	85465026	.	G	A	64.65	PASS	AC=2;AF=0.652;AN=2;DP=575;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:91:861,91,0:0,0,15,16
chr1	85484366	.	A	G	2332.16	PASS	AC=2;AF=0.83;AN=2;DP=3228;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2341,216,0:0,0,39,33
chr1	85484473	.	C	T	2514.43	PASS	AC=1;AF=0.756;AN=2;DP=4328;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,53:122:99:1196,0,1668:36,33,24,29
chr1	85488030	.	G	A	3432.72	PASS	AC=2;AF=0.83;AN=2;DP=4963;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3567,365,0:0,0,58,64
chr1	85488154	.	G	C	583.31	PASS	AC=2;AF=0.955;AN=2;DP=988;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:808,57,0:0,0,2,17
chr1	85490350	.	G	A	5364.5	PASS	AC=1;AF=0.5;AN=2;DP=2138;MQ=60;set=variant5-variant15-variant21-variant26-variant35	GT:AD:DP:GQ:PL:SB	0/1:276,246:522:99:5720,0,6675:137,139,130,116
chr1	85491062	.	T	C	2587.08	PASS	AC=1;AF=0.5;AN=2;DP=1194;MQ=60;set=variant5-variant15-variant21-variant26-variant35	GT:AD:DP:GQ:PL:SB	0/1:154,118:272:99:2866,0,3977:79,75,56,62
chr1	85491271	.	TAA	TA,TAAA,T	855.51	PASS	AC=1,0,0;AF=0.476,0.024,0.012;AN=2;DP=6130;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-filterInvariant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:167:99:71,64,19,13
chr1	85507074	.	G	T	196.77	PASS	AC=2;AF=1;AN=2;DP=430;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.666;ReadPosRankSum=1.179;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:497,39,0:0,0,2,11
chr1	85511057	.	AAAC	A	613.42	PASS	AC=1;AF=0.5;AN=2;DP=324;MQ=60;set=variant-variant15-variant23-variant24-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:1032,0,813:7,13,10,16
chr1	85514282	.	T	C	87.14	PASS	AC=1;AF=0.656;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant12-variant15-variant17-variant21-variant22-variant23-variant24-variant31-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:81:81,0,439:5,10,2,3
chr1	85527974	.	G	A	619.4	PASS	AC=1;AF=0.886;AN=2;DP=1410;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:640,0,394:9,7,14,11
chr1	85528006	.	C	A	199.69	PASS	AC=1;AF=0.625;AN=2;DP=927;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant31-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,26:42:99:638,0,392:8,8,12,14
chr1	85537502	.	T	A	376.59	PASS	AC=1;AF=0.86;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:18:210,0,18:1,0,5,2
chr1	85537522	.	T	C	713.3	PASS	AC=1;AF=0.852;AN=2;DP=826;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:64:247,0,64:2,0,6,1
chr1	85538655	.	A	G	136.08	PASS	AC=1;AF=0.881;AN=2;DP=230;FS=0;set=variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant31-variant32-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:99,0,167:5,2,3,2
chr1	85538879	.	G	A	356.14	PASS	AC=1;AF=0.633;AN=2;DP=332;MQ=60;set=variant6-variant9-variant12-variant15-variant17-variant18-variant22-variant23-variant24-variant31-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,7:27:99:146,0,595:5,15,2,5
chr1	85547270	.	A	G	314.21	PASS	AC=1;AF=0.77;AN=2;DP=938;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:195,0,530:5,13,0,7
chr1	85551468	.	A	ATCAGTTTTTCT	256.32	PASS	AC=1;AF=0.77;AN=2;DP=495;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:383,0,474:10,2,7,0
chr1	85575892	.	C	T	190.19	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=19.02;ReadPosRankSum=0;SOR=1.085;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:218,0,149:0,4,0,6
chr1	85583323	.	T	A	376.17	PASS	AC=1;AF=0.525;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant10-variant12-variant15-variant17-variant18-variant21-variant27-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:290,0,250:6,2,7,4
chr1	85589939	.	GT	G	1542.07	PASS	AC=2;AF=0.697;AN=2;DP=4780;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:6251,505,0:0,0,64,104
chr1	85592126	.	G	T	640.93	PASS	AC=2;AF=0.977;AN=2;DP=664;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:713,60,0:0,0,16,4
chr1	85595645	.	C	T	1497.69	PASS	AC=2;AF=0.684;AN=2;DP=4973;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5294,508,0:0,0,103,67
chr1	85595975	.	T	C	851.55	PASS	AC=2;AF=0.694;AN=2;DP=2461;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2544,219,0:0,0,17,56
chr1	85598527	.	TC	T	1272.66	PASS	AC=2;AF=1;AN=2;DP=2159;FS=0;MQRankSum=-0.675;ReadPosRankSum=-0.206;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1712,168,0:0,0,46,10
chr1	85624549	.	C	T	5973.41	PASS	AC=2;AF=1;AN=2;DP=6915;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:4839,499,0:0,0,88,79
chr1	85624864	.	G	A	2357.4	PASS	AC=2;AF=1;AN=2;DP=3254;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3090,311,0:0,0,44,60
chr1	85647713	.	T	C	1362.19	PASS	AC=2;AF=1;AN=2;DP=1243;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:947,87,0:0,0,21,8
chr1	85648620	.	C	T	4029.58	PASS	AC=2;AF=1;AN=2;DP=5395;FS=0;MQ=60;MQRankSum=0.243;ReadPosRankSum=0.043;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4357,428,0:0,0,72,71
chr1	85648905	.	T	C	81	PASS	AC=1;AF=0.737;AN=2;DP=798;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:588,0,248:4,7,4,14
chr1	85666156	.	T	G	2526.72	PASS	AC=1;AF=0.563;AN=2;DP=3338;MQ=60;set=variant6-variant9-variant10-variant11-variant15-variant16-variant18-variant19-variant22-variant24-variant31-variant33-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:115,94:209:99:2273,0,2902:52,63,46,48
chr1	85724328	.	C	T	2324.25	PASS	AC=1;AF=0.542;AN=2;DP=1088;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant22-variant33-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,54:112:99:1279,0,1562:25,33,20,34
chr1	85725353	.	GCCGGAAA	G	621.21	PASS	AC=1;AF=0.617;AN=2;DP=2409;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:1344,0,2115:9,20,12,23
chr1	85732065	.	A	G	1361.64	PASS	AC=1;AF=0.662;AN=2;DP=3111;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,48:99:99:1372,0,1390:34,17,30,18
chr1	85732941	.	A	C	4325.88	PASS	AC=1;AF=0.662;AN=2;DP=10466;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,171:377:99:3754,0,4684:95,111,82,89
chr1	85741684	.	T	C	162.18	PASS	AC=1;AF=0.537;AN=2;DP=563;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:290,0,301:6,5,8,2
chr1	85741921	.	G	C	3889.75	PASS	AC=1;AF=0.872;AN=2;DP=6147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,102:196:99:2497,0,2207:50,44,49,53
chr1	85742012	.	G	C	2178.77	PASS	AC=1;AF=0.537;AN=2;DP=5124;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:110,127:237:99:3075,0,2590:51,59,51,76
chr1	85742338	.	G	C	3403.36	PASS	AC=1;AF=0.872;AN=2;DP=5123;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,68:140:99:1809,0,1913:38,34,39,29
chr1	85785550	.	C	CA	6742.14	PASS	AC=2;AF=0.886;AN=2;DP=15466;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,420:420:99:17141,1284,0:0,0,214,206
chr1	85785655	.	T	C	3328.88	PASS	AC=2;AF=0.756;AN=2;DP=9419;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,304:304:99:9682,910,0:0,0,122,182
chr1	85785751	.	T	C	1400.9	PASS	AC=1;AF=0.614;AN=2;DP=2054;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,54:137:99:1601,0,2355:32,51,16,38
chr1	85786299	.	T	A	1422.51	PASS	AC=1;AF=0.568;AN=2;DP=1941;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,52:115:99:1376,0,1577:30,33,22,30
chr1	85786748	.	GAAA	GAA,G,GA,GAAAA	665.54	PASS	AC=1,0,0,0;AF=0.397,0.026,0.09,0.026;AN=2;DP=6469;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:171:99:58,46,46,21
chr1	85786957	.	T	G,C	554.47	PASS	AC=1,0;AF=0.543,0.022;AN=2;DP=898;set=variant-variant2-filterInvariant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:50:99:8,12,12,18
chr1	85786977	.	G	A	209.13	PASS	AC=1;AF=0.568;AN=2;DP=681;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:687,0,284:8,4,13,9
chr1	85787114	.	A	T	1901.62	PASS	AC=2;AF=1;AN=2;DP=2974;FS=0;MQ=60;MQRankSum=0.073;ReadPosRankSum=1.635;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2944,228,0:0,0,47,29
chr1	85787118	.	G	C	505.1	PASS	AC=1;AF=0.571;AN=2;DP=1464;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1104,0,940:25,12,26,18
chr1	85787323	.	T	A	431.04	PASS	AC=1;AF=0.571;AN=2;DP=841;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:630,0,590:7,15,5,17
chr1	85790633	.	G	A	675.29	PASS	AC=1;AF=0.571;AN=2;DP=1429;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,56:102:99:1625,0,1165:15,31,17,39
chr1	85930272	.	GACAC	G,GAC,GACACAC	821.22	PASS	AC=0,2,0;AF=0.011,0.75,0.08;AN=2;DP=2144;set=Intersection	GT:DP:GQ:SB	2/2:31:94:0,0,9,22
chr1	86044028	.	T	C	81.15	PASS	AC=1;AF=0.5;AN=2;DP=17;FractionInformativeReads=1;MQ=60;set=variant15-variant28-variant36	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:109,0,231:0,6,1,3
chr1	86046561	.	C	A	1668.37	PASS	AC=2;AF=0.722;AN=2;DP=2633;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,80:81:99:2299,228,0:0,1,53,27
chr1	86046924	.	G	A	466.77	PASS	AC=2;AF=0.676;AN=2;DP=1072;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1581,133,0:0,0,7,38
chr1	86118447	.	A	G	2691.81	PASS	AC=2;AF=0.955;AN=2;DP=2589;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2873,234,0:0,0,63,15
chr1	86119296	.	C	A	55.98	PASS	AC=2;AF=0.621;AN=2;DP=1151;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:809,74,0:0,0,14,11
chr1	86146672	.	G	A	115.17	PASS	AC=2;AF=0.641;AN=2;DP=971;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1682,135,0:0,0,9,36
chr1	86167957	.	C	T	1270.42	PASS	AC=2;AF=0.849;AN=2;DP=1521;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1352,152,0:0,0,23,28
chr1	86194997	.	C	T	1204.39	PASS	AC=2;AF=0.652;AN=2;DP=4506;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,140:142:99:4087,375,0:1,1,78,62
chr1	86195066	.	A	C	1532.54	PASS	AC=2;AF=0.643;AN=2;DP=4805;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,146:148:99:4141,353,0:1,1,70,76
chr1	86201744	.	C	T	88.95	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant11-variant15-variant23-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:175,0,157:3,2,5,0
chr1	86202016	.	C	T	4884.14	PASS	AC=2;AF=0.955;AN=2;DP=6517;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4988,464,0:0,0,83,72
chr1	86202102	.	C	A	1902.5	PASS	AC=1;AF=0.5;AN=2;DP=1260;MQ=60;set=variant-variant3-variant11-variant15-variant22-variant23-variant30-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,79:169:99:1845,0,2140:40,50,42,37
chr1	86210241	.	G	GT	386.51	PASS	AC=2;AF=0.955;AN=2;DP=520;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:710,66,0:0,0,18,4
chr1	86210546	.	G	A	668.72	PASS	AC=2;AF=0.943;AN=2;DP=898;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:735,75,0:0,0,10,15
chr1	86211325	.	G	A	625.13	PASS	AC=2;AF=0.955;AN=2;DP=1182;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1004,84,0:0,0,7,21
chr1	86246849	.	A	C	865	PASS	AC=2;AF=0.872;AN=2;DP=1515;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1019,106,0:0,0,23,13
chr1	86249063	.	C	T	1208.39	PASS	AC=2;AF=0.966;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1045,90,0:0,0,22,8
chr1	86249911	.	A	G	2278.13	PASS	AC=2;AF=0.966;AN=2;DP=3494;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2847,257,0:0,0,44,42
chr1	86252025	.	A	G	564.83	PASS	AC=1;AF=0.656;AN=2;DP=1690;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:717,0,754:17,15,12,17
chr1	86308225	.	C	A	169.07	PASS	AC=2;AF=0.694;AN=2;DP=97;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant14-variant15-variant18-variant19-variant20-variant25-variant28-variant29-variant31-variant32-variant33-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,0,2
chr1	86313536	.	G	T	123.66	PASS	AC=1;AF=0.538;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant17-variant19-variant20-variant25-variant28-variant30-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:212,0,146:1,4,2,7
chr1	86334070	.	T	A	775.41	PASS	AC=1;AF=0.641;AN=2;DP=1433;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:404,0,445:13,5,11,5
chr1	86334316	.	T	C	1373.01	PASS	AC=1;AF=0.641;AN=2;DP=2202;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,36:82:99:817,0,1091:15,31,15,21
chr1	86334675	.	T	C	286.03	PASS	AC=1;AF=0.704;AN=2;DP=182;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:344,0,293:1,8,0,9
chr1	86340193	.	G	T	43.52	PASS	AC=2;AF=0.859;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:432,39,0:0,0,10,3
chr1	86340262	.	C	A	364.05	PASS	AC=1;AF=0.596;AN=2;DP=649;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:405,0,481:12,9,12,7
chr1	86340523	.	T	C	82.7	PASS	AC=2;AF=0.863;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:324,27,0:0,0,2,7
chr1	86340524	.	G	A	82.7	PASS	AC=1;AF=0.63;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:78:78,0,159:2,4,0,3
chr1	86340794	.	T	C	669.63	PASS	AC=2;AF=0.863;AN=2;DP=478;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:766,74,0:0,0,17,8
chr1	86340880	.	A	G	478.7	PASS	AC=1;AF=0.593;AN=2;DP=1216;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:817,0,598:13,11,21,10
chr1	86340892	.	A	G	1067.11	PASS	AC=1;AF=0.641;AN=2;DP=1511;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:710,0,887:22,13,15,14
chr1	86341153	.	G	A	163.66	PASS	AC=1;AF=0.574;AN=2;DP=447;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:273,0,268:2,7,4,7
chr1	86361384	.	C	T	175.08	PASS	AC=2;AF=0.886;AN=2;DP=520;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:358,27,0:0,0,7,2
chr1	86361802	.	C	G	562	PASS	AC=1;AF=0.775;AN=2;DP=2102;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:862,0,1015:13,24,11,24
chr1	86375654	.	C	G	1134.51	PASS	AC=1;AF=0.775;AN=2;DP=3240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,51:93:99:1193,0,927:22,20,25,26
chr1	86375840	.	G	A	128.93	PASS	AC=1;AF=0.563;AN=2;DP=72;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant13-variant15-variant20-variant21-variant23	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:243,0,106:0,3,0,6
chr1	86435850	.	T	C	395.92	PASS	AC=1;AF=0.591;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant11-variant13-variant15-variant20-variant21-variant22-variant23-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,28:37:99:721,0,203:6,3,16,12
chr1	86482922	.	A	T	442.22	PASS	AC=1;AF=0.548;AN=2;DP=782;MQ=60;set=variant2-variant3-variant4-variant6-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,28:42:99:756,0,411:4,10,10,18
chr1	86487914	.	C	A	778.24	PASS	AC=1;AF=0.538;AN=2;DP=2370;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,59:112:99:1355,0,1256:27,26,30,29
chr1	86487981	.	G	A	1581.35	PASS	AC=2;AF=0.756;AN=2;DP=3059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2330,239,0:0,0,32,48
chr1	86487992	.	A	AACAG	2112.9	PASS	AC=2;AF=0.756;AN=2;DP=2761;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2732,186,0:0,0,23,37
chr1	86497769	.	C	G	53.54	PASS	AC=2;AF=0.857;AN=2;DP=80;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant10-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr1	86512536	.	C	T	1056.34	PASS	AC=1;AF=0.5;AN=2;DP=898;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant13-variant15-variant19-variant20-variant27-variant30-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,38:79:99:1020,0,1113:16,25,18,20
chr1	86557967	.	G	A	646.44	PASS	AC=2;AF=0.618;AN=2;DP=1402;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1701,186,0:0,0,32,30
chr1	86590915	.	G	A	3873.43	PASS	AC=2;AF=0.989;AN=2;DP=4577;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,120:121:99:3915,324,0:1,0,54,66
chr1	86591837	.	G	A	3808.89	PASS	AC=2;AF=0.726;AN=2;DP=5788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:5018,488,0:0,0,65,98
chr1	86621992	.	C	A	605.87	PASS	AC=1;AF=0.757;AN=2;DP=1696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:974,0,814:22,5,24,9
chr1	86622545	.	G	A	132.47	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant14-variant15-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:512,0,164:3,5,2,14
chr1	86813770	.	G	A	313.04	PASS	AC=1;AF=0.568;AN=2;DP=471;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant35-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:358,0,575:15,6,10,3
chr1	86813829	.	T	C	943.25	PASS	AC=1;AF=0.531;AN=2;DP=1083;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant15-variant17-variant20-variant21-variant22-variant25-variant27-variant31-variant33-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:887,0,973:23,17,24,14
chr1	86814688	.	C	T	958.65	PASS	AC=1;AF=0.6;AN=2;DP=1245;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:838,0,612:15,8,17,11
chr1	86814743	.	C	T	1900.13	PASS	AC=1;AF=0.603;AN=2;DP=2194;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1171,0,1232:29,20,27,15
chr1	86814920	.	CA	C	1774.73	PASS	AC=1;AF=0.6;AN=2;DP=1658;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,45:75:99:1325,0,781:13,17,19,26
chr1	86815022	.	C	G	1896.89	PASS	AC=2;AF=0.795;AN=2;DP=2221;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2354,207,0:0,0,42,27
chr1	86815303	.	T	C	1792.28	PASS	AC=1;AF=0.5;AN=2;DP=1438;MQ=60;set=variant5-variant13-variant14-variant15-variant16-variant20-variant23-variant25-variant28-variant32-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:44,70:114:99:2022,0,1157:28,16,42,28
chr1	86815319	.	A	G	3329.52	PASS	AC=2;AF=0.795;AN=2;DP=5147;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4458,408,0:0,0,85,51
chr1	86817553	.	A	C	2400.97	PASS	AC=1;AF=0.5;AN=2;DP=311;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:106,96:202:99:2429,0,2652:60,46,62,34
chr1	86818572	.	T	C	3385.97	PASS	AC=2;AF=0.795;AN=2;DP=3794;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3458,359,0:0,0,64,56
chr1	86820267	.	C	T	3625.46	PASS	AC=2;AF=0.795;AN=2;DP=4010;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4298,428,0:0,0,77,66
chr1	86821194	.	A	ACT	358.01	PASS	AC=2;AF=0.824;AN=2;DP=331;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,0,8
chr1	86821910	.	CTAAAA	C	312.98	PASS	AC=2;AF=0.63;AN=2;DP=151;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant27-variant29-variant30-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	86823286	.	GA	G,GAA	122.98	PASS	AC=2,0;AF=0.565,0.13;AN=2;DP=223;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-filterInvariant22-variant25-variant27-variant29-variant31-variant35-variant37-variant38-variant40-variant44	GT:DP:GQ:SB	1/1:6:6:1,0,3,2
chr1	86838158	.	C	T	735.25	PASS	AC=2;AF=0.795;AN=2;DP=1496;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1411,147,0:0,0,29,20
chr1	86847955	.	G	A	906.07	PASS	AC=1;AF=0.617;AN=2;DP=1085;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:378,0,530:14,6,11,8
chr1	86851420	.	A	G	364.42	PASS	AC=1;AF=0.565;AN=2;DP=930;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant35-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:616,0,742:16,8,13,7
chr1	86852042	.	A	G	963.13	PASS	AC=1;AF=0.565;AN=2;DP=947;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant35-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:1106,0,1054:5,28,7,28
chr1	86852621	.	A	G	1448.73	PASS	AC=1;AF=0.565;AN=2;DP=2704;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant35-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,68:151:99:1497,0,2033:50,33,42,26
chr1	86890931	.	T	A	241.77	PASS	AC=1;AF=0.734;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:148,0,231:6,1,4,1
chr1	86891005	.	C	A	654.91	PASS	AC=1;AF=0.657;AN=2;DP=794;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:417,0,457:12,5,10,5
chr1	86891179	.	T	C	308.26	PASS	AC=1;AF=0.556;AN=2;DP=739;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant18-variant19-variant20-variant25-variant29-variant31-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:609,0,666:10,13,10,14
chr1	86894371	.	G	T	1946.26	PASS	AC=1;AF=0.684;AN=2;DP=2429;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:1026,0,799:11,22,15,27
chr1	86894496	.	T	C	196.93	PASS	AC=1;AF=0.719;AN=2;DP=412;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:92:92,0,188:2,4,0,4
chr1	86896354	.	G	A	737.82	PASS	AC=1;AF=0.852;AN=2;DP=690;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:251,0,314:8,0,6,2
chr1	86896541	.	G	A	562.18	PASS	AC=1;AF=0.568;AN=2;DP=2367;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant35-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,69:131:99:1597,0,1443:34,28,34,35
chr1	86897973	.	T	C	945.01	PASS	AC=1;AF=0.852;AN=2;DP=659;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:197,0,395:9,1,6,2
chr1	86898315	.	T	C	478.73	PASS	AC=1;AF=0.559;AN=2;DP=308;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant19-variant20-variant25-variant29-variant31-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:262,0,395:2,10,3,7
chr1	86911543	.	C	T	591.98	PASS	AC=1;AF=0.872;AN=2;DP=501;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:137,0,278:2,7,0,4
chr1	86913265	.	C	T	1126.8	PASS	AC=1;AF=0.563;AN=2;DP=1713;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant19-variant25-variant29-variant31-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,58:126:99:1361,0,1753:36,32,32,26
chr1	86920904	.	A	G	1812.81	PASS	AC=1;AF=0.55;AN=2;DP=3388;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant17-variant18-variant19-variant25-variant29-variant31-variant34-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,110:205:99:2733,0,2204:51,44,59,51
chr1	86934176	.	T	G	6450.4	PASS	AC=1;AF=0.703;AN=2;DP=6545;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,114:213:99:3044,0,2532:46,53,56,58
chr1	86939130	.	C	T	3048.82	PASS	AC=2;AF=0.955;AN=2;DP=3948;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2974,285,0:0,0,44,51
chr1	86939390	.	G	A	2203.56	PASS	AC=2;AF=0.966;AN=2;DP=3089;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2312,197,0:0,0,48,18
chr1	86947975	.	A	T	898.79	PASS	AC=1;AF=0.604;AN=2;DP=1699;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant25-variant29-variant31-variant34-variant35-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,35:87:99:792,0,1312:28,24,22,13
chr1	86952324	.	A	G	694.29	PASS	AC=1;AF=0.814;AN=2;DP=3986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,56:108:99:1484,0,1360:27,25,29,27
chr1	86956772	.	G	A	88.71	PASS	AC=1;AF=0.629;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:185,0,149:4,0,5,1
chr1	86956785	.	C	G	160.46	PASS	AC=1;AF=0.869;AN=2;DP=569;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:232,0,235:6,1,6,1
chr1	86959173	.	T	C	1102.52	PASS	AC=1;AF=0.826;AN=2;DP=4488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:1468,0,1729:41,27,38,26
chr1	86959796	.	C	T	416.88	PASS	AC=1;AF=0.813;AN=2;DP=1839;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:907,0,840:22,8,25,5
chr1	86964185	.	AAGAAAAC	A	529.59	PASS	AC=1;AF=0.5;AN=2;DP=410;MQ=60;set=variant5-variant8-variant9-variant10-variant14-variant15-variant17-variant21-variant24-variant29-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:1180,0,1039:17,6,23,7
chr1	87036746	.	C	A	2167.4	PASS	AC=1;AF=0.813;AN=2;DP=7311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,112:211:99:2710,0,2359:61,38,61,51
chr1	87045896	.	TCCTACA	T	3702.44	PASS	AC=1;AF=0.769;AN=2;DP=7723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,111:230:99:4102,0,6585:59,60,59,52
chr1	87046169	.	G	A	569.23	PASS	AC=1;AF=0.55;AN=2;DP=405;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant12-variant13-variant15-variant18-variant24-variant30-variant33-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,22:62:99:491,0,976:17,23,11,11
chr1	87099909	.	A	G	828.19	PASS	AC=1;AF=0.625;AN=2;DP=949;MQ=60;set=variant-variant5-variant9-variant12-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant26-variant30-variant33-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:643,0,680:18,7,14,8
chr1	87101245	.	A	G	467.54	PASS	AC=1;AF=0.717;AN=2;DP=1367;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:888,0,1095:29,10,23,13
chr1	87101375	.	C	G	893.64	PASS	AC=1;AF=0.717;AN=2;DP=3171;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:94,74:168:99:1658,0,2163:42,52,32,42
chr1	87170493	.	T	G	3239.62	PASS	AC=1;AF=0.545;AN=2;DP=1796;MQ=60;set=variant3-variant9-variant13-variant15-variant19-variant24-variant25-variant29-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,101:171:99:2687,0,1719:34,36,51,50
chr1	87185449	.	T	G,C	376.58	PASS	AC=1,0;AF=0.632,0.026;AN=2;DP=305;FractionInformativeReads=1;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:20:99:0,10,1,9
chr1	87189896	.	G	T	51.2	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,195:5,2,3,1
chr1	87200729	.	C	G	4877.75	PASS	AC=1;AF=0.679;AN=2;DP=4195;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:123,100:223:99:2306,0,2931:56,67,50,50
chr1	87207800	.	G	T	354.36	PASS	AC=1;AF=0.658;AN=2;DP=224;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant29-variant30-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:354,0,380:10,1,10,3
chr1	87207872	.	G	T	928.6	PASS	AC=1;AF=0.545;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant13-variant15-variant19-variant24-variant25-variant29-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:1018,0,842:22,10,26,12
chr1	87208953	.	T	A	3511.15	PASS	AC=1;AF=0.65;AN=2;DP=3410;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,93:173:99:2628,0,2228:40,40,47,46
chr1	87209658	.	G	A	3028.05	PASS	AC=1;AF=0.65;AN=2;DP=2822;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:96,84:180:99:2087,0,2393:51,45,53,31
chr1	87212999	.	A	G	1766.74	PASS	AC=1;AF=0.667;AN=2;DP=2343;MQ=60;set=variant3-variant7-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:83,72:155:99:1728,0,2192:31,52,30,42
chr1	87213181	.	TA	T	921.81	PASS	AC=1;AF=0.667;AN=2;DP=1042;MQ=60;set=variant3-variant7-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:990,0,1130:21,15,18,14
chr1	87328308	.	C	T	845.78	PASS	AC=1;AF=0.538;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant25-variant28-variant30-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:37,42:79:99:976,0,828:20,17,23,19
chr1	87328525	.	C	T	2749.54	PASS	AC=1;AF=0.567;AN=2;DP=2641;MQ=60;set=variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant25-variant28-variant30-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:103,118:221:99:2959,0,2422:54,49,59,59
chr1	87328839	.	G	A	3478.14	PASS	AC=1;AF=0.567;AN=2;DP=4196;MQ=60;set=variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant25-variant28-variant30-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:169,192:361:99:4894,0,4451:98,71,108,84
chr1	87368917	.	A	G	154.68	PASS	AC=1;AF=0.538;AN=2;DP=379;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant25-variant28-variant30-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:438,0,555:11,9,12,4
chr1	87369176	.	C	T	83.96	PASS	AC=1;AF=0.545;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant13-variant15-variant17-variant20-variant25-variant28-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:413,0,265:2,7,1,11
chr1	87379986	.	T	C	575.7	PASS	AC=1;AF=0.5;AN=2;DP=289;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant12-variant15-variant17-variant25-variant28	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:814,0,1047:8,12,9,12
chr1	87379996	.	G	T	585.15	PASS	AC=1;AF=0.538;AN=2;DP=473;FractionInformativeReads=1;set=variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant25-variant28-variant30-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:751,0,1021:8,11,10,9
chr1	87458695	.	G	A	1852.51	PASS	AC=1;AF=0.849;AN=2;DP=3220;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,53:92:99:1373,0,940:26,13,36,17
chr1	87458742	.	A	G	1214.78	PASS	AC=1;AF=0.5;AN=2;DP=516;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant15-variant25-variant28	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:1216,0,1869:44,36,31,25
chr1	87538182	.	TTG	T	4143.25	PASS	AC=1;AF=0.833;AN=2;DP=4193;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,62:144:99:2340,0,5220:40,42,33,29
chr1	87538200	.	G	A	4467.46	PASS	AC=1;AF=0.869;AN=2;DP=4499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,66:153:99:2409,0,5289:42,45,35,31
chr1	87549858	.	A	G	1652.72	PASS	AC=2;AF=0.977;AN=2;DP=1503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1293,135,0:0,0,27,18
chr1	87558066	.	CCACATA	C	232.96	PASS	AC=2;AF=0.977;AN=2;DP=359;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:720,48,0:0,0,15,1
chr1	87563668	.	G	A	5792.32	PASS	AC=2;AF=0.977;AN=2;DP=6951;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:6259,558,0:0,0,103,83
chr1	87563921	.	T	G	3950.02	PASS	AC=1;AF=0.93;AN=2;DP=4163;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,57:135:99:1277,0,2059:54,24,41,16
chr1	87564110	.	G	A	2407.57	PASS	AC=2;AF=1;AN=2;DP=2687;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2428,221,0:0,0,22,52
chr1	87570398	.	G	A	3460.82	PASS	AC=1;AF=0.833;AN=2;DP=4279;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,60:119:99:1637,0,1473:29,30,27,33
chr1	87572817	.	C	T	6264.43	PASS	AC=1;AF=0.93;AN=2;DP=6954;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,104:175:99:2703,0,1892:50,21,68,36
chr1	87573325	.	CAT	C	165.97	PASS	AC=1;AF=0.567;AN=2;DP=400;MQ=60;set=variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant25-variant28-variant34-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:538,0,369:6,3,10,7
chr1	87573336	.	ATATGTT	A	779.4	PASS	AC=1;AF=0.805;AN=2;DP=1124;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:453,0,859:15,7,9,5
chr1	87573963	.	T	C	2039.8	PASS	AC=1;AF=0.833;AN=2;DP=3077;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,23:82:99:654,0,1524:29,30,8,15
chr1	87573988	.	T	C	1688.89	PASS	AC=1;AF=0.93;AN=2;DP=2911;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,22:77:99:592,0,1380:24,31,7,15
chr1	87574217	.	A	G	3812.87	PASS	AC=1;AF=0.833;AN=2;DP=4039;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,66:122:99:1974,0,1685:45,11,49,17
chr1	87598117	.	T	G	5674.04	PASS	AC=2;AF=0.8;AN=2;DP=4608;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5184,470,0:0,0,96,61
chr1	87599697	.	G	A	5011.79	PASS	AC=2;AF=0.9;AN=2;DP=4501;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3516,338,0:0,0,47,66
chr1	87633761	.	C	T	151.4	PASS	AC=2;AF=0.886;AN=2;DP=1099;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1155,114,0:0,0,25,13
chr1	87794519	.	C	G	2281.72	PASS	AC=2;AF=1;AN=2;DP=2488;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1678,159,0:0,0,39,14
chr1	87811314	.	G	A	1726.34	PASS	AC=1;AF=0.5;AN=2;DP=624;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant30-variant32-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:61,55:116:99:1597,0,1433:32,29,36,19
chr1	87811835	.	G	A	2065.13	PASS	AC=1;AF=0.5;AN=2;DP=1182;MQ=60;set=variant4-variant11-variant15-variant30-variant32-variant33-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,73:163:99:1945,0,2753:30,60,25,48
chr1	87812402	.	G	A	1454.83	PASS	AC=1;AF=0.5;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant15-variant30-variant32-variant33-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,55:98:99:1456,0,1254:34,9,35,20
chr1	87812842	.	C	G	1241.43	PASS	AC=1;AF=0.5;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant30-variant32-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:2068,0,2027:20,50,18,55
chr1	89225976	.	T	C	448.14	PASS	AC=1;AF=0.711;AN=2;DP=2074;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:661,0,776:18,16,14,15
chr1	89236029	.	T	A	494.97	PASS	AC=1;AF=0.671;AN=2;DP=1644;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:878,0,1152:30,13,25,7
chr1	89236260	.	CT	CTT,C	42.03	PASS	AC=0,1;AF=0.45,0.05;AN=2;DP=362;set=filterInvariant4-variant5-variant10-variant13-variant15-filterInvariant24-variant30-variant34-variant37-variant41	GT:DP:GQ:SB	0/2:39:99:9,17,3,10
chr1	89271574	.	T	C	2228.04	PASS	AC=1;AF=0.671;AN=2;DP=3857;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,68:133:99:1795,0,1942:42,23,40,28
chr1	89280965	.	A	G	652.41	PASS	AC=1;AF=0.671;AN=2;DP=1532;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:565,0,679:17,9,15,9
chr1	89281025	.	C	T	1164.61	PASS	AC=1;AF=0.5;AN=2;DP=172;FractionInformativeReads=1;MQ=60;set=variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:35,55:90:99:1193,0,816:16,19,30,25
chr1	89301123	.	C	T	3017.96	PASS	AC=1;AF=0.711;AN=2;DP=8158;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,132:277:99:3238,0,3572:48,97,50,82
chr1	89322982	.	G	A	4460.96	PASS	AC=2;AF=1;AN=2;DP=6386;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4090,402,0:0,0,62,73
chr1	89426902	.	G	A	3248.64	PASS	AC=1;AF=0.645;AN=2;DP=3693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,80:175:99:1921,0,2451:51,44,48,32
chr1	89427252	.	G	A	472.34	PASS	AC=1;AF=0.62;AN=2;DP=298;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant27-variant28-variant31-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:348,0,176:2,5,1,9
chr1	89430420	.	A	G	1399.15	PASS	AC=1;AF=0.645;AN=2;DP=1563;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,38:62:99:935,0,560:16,8,23,15
chr1	89430492	.	G	A	1191.09	PASS	AC=1;AF=0.5;AN=2;DP=202;MQ=60;set=variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:59,50:109:99:1219,0,1563:36,23,30,20
chr1	89449278	.	C	T	104.07	PASS	AC=1;AF=0.5;AN=2;DP=1910;set=filterInvariant-variant2-variant3-variant4-variant5-variant9-filterInvariant11-variant15-variant16-variant18-variant20-filterInvariant21-variant22-variant23-variant26-variant28-variant29-filterInvariant32-variant34-variant37-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,26:87:99:572,0,1917:24,37,20,6
chr1	89449298	.	C	G	168	PASS	AC=1;AF=0.5;AN=2;DP=2538;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant7-filterInvariant8-variant9-variant11-filterInvariant12-variant15-variant16-variant18-filterInvariant19-variant20-variant21-variant22-variant23-filterInvariant24-variant26-variant28-variant29-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,36:98:99:818,0,1912:29,33,25,11
chr1	89449390	.	T	C	734.59	PASS	AC=1;AF=0.5;AN=2;DP=3980;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,67:158:99:2456,0,3610:53,38,32,35
chr1	89449399	.	T	C	746.58	PASS	AC=1;AF=0.5;AN=2;DP=3913;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,64:161:99:2382,0,3705:55,42,30,34
chr1	89449434	.	T	C	280.25	PASS	AC=1;AF=0.5;AN=2;DP=3278;set=variant-filterInvariant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-filterInvariant25-variant26-variant28-variant29-variant34-variant37-filterInvariant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,45:168:99:849,0,3328:66,57,18,27
chr1	89449483	.	C	G	150.45	PASS	AC=1;AF=0.5;AN=2;DP=2094;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant7-variant9-filterInvariant11-filterInvariant15-filterInvariant17-filterInvariant19-filterInvariant22-variant26-filterInvariant28-filterInvariant29-filterInvariant34-filterInvariant37-variant40-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:140,19:159:99:151,0,4022:77,63,6,13
chr1	89478854	.	C	G	1106.18	PASS	AC=1;AF=0.817;AN=2;DP=833;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:314,0,536:14,2,10,1
chr1	89478868	.	G	A	1045.19	PASS	AC=1;AF=0.542;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant15-variant22-variant30-variant31-variant33-variant34-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:589,0,661:18,2,16,2
chr1	89479063	.	G	A	1861.69	PASS	AC=1;AF=0.625;AN=2;DP=3331;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,52:127:99:1384,0,1793:35,40,19,33
chr1	89479074	.	C	T	1715.66	PASS	AC=1;AF=0.625;AN=2;DP=3036;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,47:118:99:1200,0,1686:32,39,17,30
chr1	89479758	.	T	C	3665.2	PASS	AC=1;AF=0.829;AN=2;DP=4213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,67:128:99:1565,0,1666:37,24,36,31
chr1	89486037	.	C	T	2180.33	PASS	AC=2;AF=0.826;AN=2;DP=3851;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3778,325,0:0,0,77,32
chr1	89517918	.	C	T	269.73	PASS	AC=2;AF=0.837;AN=2;DP=535;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:621,45,0:0,0,14,1
chr1	89518065	.	C	G	1702.61	PASS	AC=2;AF=0.837;AN=2;DP=7166;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6063,619,0:0,0,117,90
chr1	89518120	.	A	G	1893.05	PASS	AC=1;AF=0.607;AN=2;DP=4833;set=variant2-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,96:209:99:2170,0,2884:52,61,46,50
chr1	89518173	.	T	A	1232.25	PASS	AC=2;AF=0.837;AN=2;DP=5742;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:6873,490,0:0,0,68,92
chr1	89518195	.	G	A	1285.72	PASS	AC=2;AF=0.837;AN=2;DP=4864;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:6373,454,0:0,0,65,83
chr1	89520329	.	GAAAAAC	G	410.86	PASS	AC=1;AF=0.641;AN=2;DP=1316;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,21:56:99:777,0,2714:23,12,18,3
chr1	89520574	.	C	A	780.66	PASS	AC=1;AF=0.829;AN=2;DP=3219;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,40:81:99:1024,0,993:16,25,14,26
chr1	89520636	.	G	A	344.06	PASS	AC=1;AF=0.829;AN=2;DP=1406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:803,0,1216:5,18,8,14
chr1	89520643	.	C	T	310.54	PASS	AC=1;AF=0.829;AN=2;DP=1278;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:769,0,1140:3,15,6,14
chr1	89522512	.	C	T	1958.88	PASS	AC=1;AF=0.609;AN=2;DP=5268;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,88:161:99:2119,0,1839:51,22,53,35
chr1	89522646	.	G	C	2129.28	PASS	AC=1;AF=0.829;AN=2;DP=8201;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,110:235:99:2924,0,3150:61,64,53,57
chr1	89574026	.	G	A	2249.91	PASS	AC=1;AF=0.743;AN=2;DP=3027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1104,0,1117:19,29,17,28
chr1	89575677	.	T	C	126.78	PASS	AC=1;AF=0.75;AN=2;DP=297;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:239,0,153:4,1,2,5
chr1	89579941	.	T	C	4046.9	PASS	AC=1;AF=0.73;AN=2;DP=6028;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,90:185:99:2113,0,2249:47,48,44,46
chr1	89582690	.	G	C	2703.63	PASS	AC=1;AF=0.73;AN=2;DP=3927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:1297,0,1609:38,28,31,23
chr1	89583544	.	T	C	286.76	PASS	AC=1;AF=0.736;AN=2;DP=362;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:311,0,135:0,4,0,9
chr1	89597755	.	T	C	2223.05	PASS	AC=1;AF=0.716;AN=2;DP=2356;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1056,0,1250:22,27,22,20
chr1	89607479	.	G	T	2770.83	PASS	AC=1;AF=0.716;AN=2;DP=3015;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,49:85:99:1848,0,2250:6,30,16,33
chr1	89607486	.	T	C	2721.22	PASS	AC=1;AF=0.743;AN=2;DP=2704;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:1792,0,2171:6,26,13,29
chr1	89615979	.	C	T	1021.21	PASS	AC=1;AF=0.716;AN=2;DP=976;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:185,0,856:21,7,7,6
chr1	89618472	.	GA	G,GAA	553.25	PASS	AC=1,0;AF=0.56,0.036;AN=2;DP=2880;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:70:99:20,20,16,14
chr1	89618503	.	T	C	1088.18	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:46,32:78:99:636,0,1179:19,27,17,15
chr1	89637578	.	G	A	9008.28	PASS	AC=1;AF=0.743;AN=2;DP=13315;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:206,217:423:99:5135,0,4929:98,108,103,114
chr1	89647386	.	G	A	3838.67	PASS	AC=1;AF=0.744;AN=2;DP=4531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1467,0,1146:31,19,37,25
chr1	89647546	.	T	TC	912.44	PASS	AC=1;AF=0.744;AN=2;DP=1242;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:625,0,470:2,12,2,16
chr1	89650850	.	A	T	588.02	PASS	AC=1;AF=0.588;AN=2;DP=2526;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,64:107:99:1559,0,1129:14,29,34,30
chr1	89652071	.	T	C	672.78	PASS	AC=1;AF=0.574;AN=2;DP=3065;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,46:107:99:1745,0,14999:32,29,23,23
chr1	89652072	.	C	T	672.78	PASS	AC=1;AF=0.574;AN=2;DP=3054;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,46:108:99:1745,0,14999:33,29,23,23
chr1	89652078	.	A	T	708.75	PASS	AC=1;AF=0.574;AN=2;DP=3065;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,45:107:99:1703,0,15464:30,32,23,22
chr1	89652087	.	C	T	795.74	PASS	AC=1;AF=0.574;AN=2;DP=3040;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,44:108:99:1655,0,15891:29,35,22,22
chr1	89652088	.	C	G	795.74	PASS	AC=1;AF=0.574;AN=2;DP=3012;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,44:108:99:1655,0,15891:29,35,22,22
chr1	89652090	.	T	G	753.75	PASS	AC=1;AF=0.574;AN=2;DP=3002;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,43:106:99:1655,0,15891:29,34,22,21
chr1	89652094	.	G	A	711.76	PASS	AC=1;AF=0.574;AN=2;DP=2965;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,43:107:99:1655,0,15811:29,35,22,21
chr1	89652097	.	C	T	714.77	PASS	AC=1;AF=0.574;AN=2;DP=2971;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,42:105:99:1616,0,15662:28,35,22,20
chr1	89652102	.	A	T	720.81	PASS	AC=1;AF=0.574;AN=2;DP=2974;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:1577,0,15428:28,34,22,20
chr1	89661228	.	T	G	2628.11	PASS	AC=1;AF=0.731;AN=2;DP=5006;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,80:154:99:2064,0,1750:31,43,30,50
chr1	89664276	.	T	C	523.83	PASS	AC=1;AF=0.75;AN=2;DP=484;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:220,0,328:8,3,6,1
chr1	89726592	.	G	A	543.94	PASS	AC=2;AF=0.795;AN=2;DP=1135;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1170,84,0:0,0,2,26
chr1	89727870	.	A	T	501.16	PASS	AC=2;AF=0.607;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant13-variant15-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1587,144,0:0,0,31,17
chr1	89732237	.	G	A	901.73	PASS	AC=2;AF=0.607;AN=2;DP=1264;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant13-variant15-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3312,305,0:0,0,30,72
chr1	89735314	.	G	A	4552.23	PASS	AC=2;AF=0.65;AN=2;DP=1066;MQ=60;set=variant3-variant5-variant6-variant13-variant15-variant34-variant35-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4384,378,0:0,0,57,69
chr1	89737152	.	GA	G	15431.5	PASS	AC=2;AF=0.65;AN=2;DP=3045;MQ=60;set=variant3-variant5-variant6-variant13-variant15-variant34-variant35-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,354:354:99:12112,1065,0:0,0,204,150
chr1	89737161	.	CA	C	3772.57	PASS	AC=2;AF=0.767;AN=2;DP=13137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,381:381:99:11308,1143,0:0,0,225,156
chr1	89845926	.	GT	G	1404.85	PASS	AC=2;AF=0.92;AN=2;DP=2639;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2229,225,0:0,0,49,26
chr1	89847153	.	G	A	344.27	PASS	AC=1;AF=0.567;AN=2;DP=704;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant33-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:700,0,644:17,12,21,7
chr1	89847372	.	G	T	1246.92	PASS	AC=2;AF=0.791;AN=2;DP=6303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5241,507,0:0,0,92,77
chr1	89847411	.	C	T	1318.78	PASS	AC=2;AF=0.791;AN=2;DP=6406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5872,556,0:0,0,99,87
chr1	89847444	.	A	G	1338.45	PASS	AC=2;AF=0.791;AN=2;DP=6234;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5861,554,0:0,0,91,94
chr1	89849201	.	C	G	3125.44	PASS	AC=2;AF=0.92;AN=2;DP=4350;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2790,289,0:0,0,47,50
chr1	89849350	.	G	A	2628.18	PASS	AC=2;AF=0.92;AN=2;DP=3295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2864,263,0:0,0,51,37
chr1	89849441	.	T	G	2189.15	PASS	AC=2;AF=0.92;AN=2;DP=3720;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3012,288,0:0,0,44,52
chr1	89849574	.	G	A	1294.23	PASS	AC=2;AF=0.859;AN=2;DP=1854;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1463,117,0:0,0,15,24
chr1	89849742	.	A	T	840.11	PASS	AC=2;AF=0.92;AN=2;DP=2217;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1672,181,0:0,0,28,33
chr1	89851100	.	G	GT	46.7	PASS	AC=2;AF=0.907;AN=2;DP=276;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant35-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,8:9:1:158,1,0:0,1,2,6
chr1	89851522	.	T	G	5848.72	PASS	AC=1;AF=0.5;AN=2;DP=458;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.604;QD=12.77;ReadPosRankSum=3.622;SOR=0.662;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:218,240:458:99:5877,0,5396:118,100,128,112
chr1	89885854	.	G	A	883.42	PASS	AC=2;AF=0.92;AN=2;DP=2484;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2008,195,0:0,0,24,41
chr1	89888530	.	C	T	3329.3	PASS	AC=2;AF=0.92;AN=2;DP=5591;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4834,445,0:0,0,106,43
chr1	89888552	.	T	A	4753.13	PASS	AC=2;AF=0.92;AN=2;DP=7437;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6552,621,0:0,0,136,71
chr1	89888585	.	C	G	8758.22	PASS	AC=2;AF=0.92;AN=2;DP=9590;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,269:269:99:12087,827,0:0,0,161,108
chr1	89888588	.	G	T	8709.61	PASS	AC=2;AF=0.92;AN=2;DP=9715;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,273:273:99:12063,824,0:0,0,160,113
chr1	90048132	.	T	C	2315.81	PASS	AC=1;AF=0.594;AN=2;DP=4284;MQ=60;set=variant5-variant6-variant11-variant15-variant17-variant19-variant21-variant24-variant26-variant29-variant32-variant33-variant36-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:148,175:323:99:4287,0,3629:74,74,79,96
chr1	90049040	.	A	G	1933.11	PASS	AC=1;AF=0.588;AN=2;DP=2633;MQ=60;set=variant5-variant6-variant11-variant15-variant17-variant19-variant21-variant24-variant26-variant29-variant30-variant32-variant33-variant36-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:85,93:178:99:2285,0,2210:42,43,50,43
chr1	90058242	.	GT	GTT,G	1168.65	PASS	AC=1,0;AF=0.6,0.033;AN=2;DP=1674;set=variant3-variant4-variant5-variant6-filterInvariant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:53:99:23,15,11,4
chr1	90058885	.	G	A	429.45	PASS	AC=1;AF=0.556;AN=2;DP=302;FractionInformativeReads=1;set=variant-variant7-variant8-variant10-variant12-variant15-variant19-variant22-variant23-variant25-variant26-variant28-variant31-variant33-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:274,0,465:12,1,8,1
chr1	90058936	.	CAA	CA,C,CAAA	336.11	PASS	AC=1,0,0;AF=0.5,0.116,0.012;AN=2;DP=2533;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:61:99:17,13,27,4
chr1	90059575	.	G	T	2373.23	PASS	AC=2;AF=0.694;AN=2;DP=5160;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6648,613,0:0,0,67,138
chr1	90060824	.	C	T	8606.3	PASS	AC=2;AF=0.966;AN=2;DP=9805;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,258:258:99:8288,774,0:0,0,101,157
chr1	90061014	.	C	T	2746.11	PASS	AC=1;AF=0.55;AN=2;DP=3455;MQ=60;set=variant-variant7-variant8-variant10-variant12-variant15-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,83:188:99:2100,0,2820:58,47,44,39
chr1	90063180	.	C	G	6590.93	PASS	AC=1;AF=0.55;AN=2;DP=11724;set=variant-variant7-variant8-variant10-variant12-variant15-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:358,403:761:99:9797,0,8745:208,150,209,194
chr1	90098715	.	G	C	473.69	PASS	AC=1;AF=0.657;AN=2;DP=2222;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,32:89:99:798,0,1412:31,26,14,18
chr1	90171835	.	C	T	3105.3	PASS	AC=2;AF=1;AN=2;DP=3488;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3171,305,0:0,0,66,36
chr1	90178743	.	A	G	1919.41	PASS	AC=2;AF=1;AN=2;DP=4181;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,103:104:99:3236,281,0:1,0,49,54
chr1	90182591	.	A	G	4290.72	PASS	AC=1;AF=0.5;AN=2;DP=5699;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant15-variant18-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:232,185:417:99:4889,0,6219:103,129,81,104
chr1	90185106	.	C	G	816.84	PASS	AC=1;AF=0.603;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,31:54:99:1111,0,790:1,22,2,29
chr1	90286636	.	TGCTGCC	T	26183.2	PASS	AC=2;AF=0.977;AN=2;DP=25638;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,627:627:99:27677,1895,0:0,0,279,348
chr1	90459744	.	A	G	1629.27	PASS	AC=2;AF=0.966;AN=2;DP=2868;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2556,254,0:0,0,48,37
chr1	90470915	.	T	A	856.7	PASS	AC=2;AF=0.73;AN=2;DP=2870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3241,306,0:0,0,46,56
chr1	90486412	.	T	G	1806.11	PASS	AC=2;AF=0.757;AN=2;DP=5789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:5715,587,0:0,0,104,92
chr1	90493026	.	G	A	665.68	PASS	AC=2;AF=0.73;AN=2;DP=3221;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3630,309,0:0,0,44,59
chr1	90493918	.	G	GA	556.2	PASS	AC=2;AF=0.757;AN=2;DP=1631;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1605,171,0:0,0,23,32
chr1	91177462	.	T	A	1551.3	PASS	AC=1;AF=0.5;AN=2;DP=536;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant19-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,72:115:99:2199,0,1109:14,29,22,50
chr1	91177647	.	A	C	411.41	PASS	AC=1;AF=0.667;AN=2;DP=1797;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:1024,0,677:18,13,23,15
chr1	91381105	.	T	A	1396.77	PASS	AC=1;AF=0.5;AN=2;DP=632;FractionInformativeReads=1;MQ=60;set=variant-variant13-variant15-variant16-variant26-variant29	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1669,0,1399:29,26,33,30
chr1	91447985	.	C	T	3650.43	PASS	AC=2;AF=0.932;AN=2;DP=4190;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3426,353,0:0,0,46,72
chr1	91728053	.	G	A	2749.48	PASS	AC=2;AF=1;AN=2;DP=4134;FS=0;MQ=60;MQRankSum=-0.942;ReadPosRankSum=1.428;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3779,376,0:0,0,54,72
chr1	91728202	.	T	C	431.9	PASS	AC=2;AF=1;AN=2;DP=550;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:672,51,0:0,0,2,15
chr1	91739208	.	C	T	1111.35	PASS	AC=2;AF=1;AN=2;DP=1414;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1220,105,0:0,0,23,12
chr1	91739414	.	G	A	1334.73	PASS	AC=2;AF=1;AN=2;DP=1151;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1017,90,0:0,0,9,21
chr1	91740105	.	T	G	2313.23	PASS	AC=2;AF=1;AN=2;DP=3132;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.253;ReadPosRankSum=-0.506;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2128,201,0:0,0,44,23
chr1	91781304	.	T	C	868.94	PASS	AC=2;AF=1;AN=2;DP=617;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:985,75,0:0,0,22,3
chr1	91781413	.	T	G	945.9	PASS	AC=2;AF=0.782;AN=2;DP=2365;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,87:88:99:2791,254,0:1,0,43,44
chr1	91813184	.	C	T	793.44	PASS	AC=2;AF=1;AN=2;DP=1019;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:737,60,0:0,0,4,16
chr1	91841301	.	T	C	864.65	PASS	AC=2;AF=1;AN=2;DP=1520;FS=0;MQ=60;MQRankSum=-0.289;ReadPosRankSum=-0.144;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1392,117,0:0,0,9,30
chr1	91846374	.	C	A	2901.57	PASS	AC=2;AF=1;AN=2;DP=4109;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3443,350,0:0,0,50,67
chr1	91846595	.	T	TA	220.74	PASS	AC=2;AF=1;AN=2;DP=711;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:904,75,0:0,0,10,15
chr1	91846654	.	A	T	196.77	PASS	AC=2;AF=1;AN=2;DP=161;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:222,15,0:0,0,0,5
chr1	91851253	.	T	C	2751.93	PASS	AC=2;AF=1;AN=2;DP=3664;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3617,336,0:0,0,52,60
chr1	91859795	.	T	C	6540.7	PASS	AC=2;AF=1;AN=2;DP=6846;FS=0;MQ=60;MQRankSum=0.152;ReadPosRankSum=0.59;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5218,552,0:0,0,93,91
chr1	91870410	.	G	C	3112.18	PASS	AC=1;AF=0.594;AN=2;DP=3218;MQ=60;set=variant3-variant5-variant11-variant15-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,99:218:99:2240,0,2789:57,62,57,42
chr1	91966445	.	A	G	2000.83	PASS	AC=1;AF=0.537;AN=2;DP=2374;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:56,37:93:99:914,0,1275:32,24,25,12
chr1	91967454	.	A	G	390.33	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.799;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;QD=15.61;ReadPosRankSum=1.67;SOR=0.362;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:419,0,306:2,9,4,10
chr1	91973557	.	T	G	1416.26	PASS	AC=2;AF=1;AN=2;DP=2427;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1821,165,0:0,0,18,37
chr1	91978963	.	T	TAA	61.16	PASS	AC=1;AF=0.614;AN=2;DP=165;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant17-variant19-variant21-variant22-variant24-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:94:244,0,94:0,3,1,6
chr1	91980447	.	A	G	3854.16	PASS	AC=2;AF=0.817;AN=2;DP=4743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4909,461,0:0,0,99,55
chr1	91989572	.	T	G	1373.56	PASS	AC=2;AF=0.955;AN=2;DP=1530;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1866,170,0:0,0,43,14
chr1	91989707	.	A	G	1538.88	PASS	AC=1;AF=0.5;AN=2;DP=146;FS=7.469;FractionInformativeReads=1;MQ=60;MQRankSum=-0.415;QD=10.54;ReadPosRankSum=-0.849;SOR=1.257;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:83,63:146:99:1567,0,2225:41,42,39,24
chr1	91990487	.	T	C	9548.47	PASS	AC=1;AF=0.594;AN=2;DP=9977;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,178:384:99:4186,0,5014:103,103,85,93
chr1	91991268	.	T	A	2034.93	PASS	AC=2;AF=0.943;AN=2;DP=3088;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2048,228,0:0,0,17,59
chr1	92101035	.	A	G	358.74	PASS	AC=1;AF=0.625;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant10-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant33-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:251,0,302:2,8,1,7
chr1	92108899	.	C	T	2668.59	PASS	AC=1;AF=0.81;AN=2;DP=9765;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,143:291:99:3495,0,3833:70,78,67,76
chr1	92147961	.	CTT	CT,CTTT,CTTTTT,C,CTTTT	354.5	PASS	AC=0,0,0,1,0;AF=0.212,0.227,0.076,0.015,0.03;AN=2;DP=1913;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-filterInvariant35-filterInvariant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:76:99:30,22,15,9
chr1	92148227	.	C	G	5403.88	PASS	AC=2;AF=0.767;AN=2;DP=5251;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4183,386,0:0,0,62,67
chr1	92148839	.	T	C	803.55	PASS	AC=2;AF=0.583;AN=2;DP=515;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant15-variant18-variant28-variant29-variant31-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1396,117,0:0,0,20,19
chr1	92149096	.	C	T	722.95	PASS	AC=2;AF=0.591;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant15-variant18-variant28-variant29-variant31-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1101,93,0:0,0,19,12
chr1	92149139	.	C	T	724.64	PASS	AC=2;AF=0.591;AN=2;DP=410;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant15-variant18-variant28-variant29-variant31-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:924,93,0:0,0,15,16
chr1	92149277	.	C	T	703.61	PASS	AC=2;AF=0.577;AN=2;DP=305;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant15-variant18-variant28-variant29-variant31-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:58:635,58,0:0,0,14,4
chr1	92163786	.	G	T	568.33	PASS	AC=2;AF=0.607;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant15-variant17-variant18-variant28-variant29-variant31-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,2,7
chr1	92174260	.	A	G	6407.95	PASS	AC=2;AF=0.898;AN=2;DP=8474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,204:205:99:6398,577,0:1,0,94,110
chr1	92177938	.	A	G	2822.11	PASS	AC=2;AF=0.607;AN=2;DP=3359;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4292,426,0:0,0,77,65
chr1	92181557	.	G	T	278.52	PASS	AC=2;AF=0.667;AN=2;DP=105;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant14-variant15-variant18-variant20-variant26-variant27-variant33-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:231,18,0:0,0,6,0
chr1	92184814	.	G	T	1963.36	PASS	AC=2;AF=0.614;AN=2;DP=1810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant15-variant17-variant18-variant22-variant25-variant26-variant28-variant29-variant31-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3348,337,0:0,0,67,46
chr1	92185185	.	T	C	142.99	PASS	AC=2;AF=0.729;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:430,39,0:0,0,7,6
chr1	92185657	.	C	T	2081.28	PASS	AC=2;AF=0.671;AN=2;DP=2448;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2467,212,0:0,0,24,47
chr1	92200597	.	G	A	1163.5	PASS	AC=2;AF=0.611;AN=2;DP=1093;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1145,93,0:0,0,7,24
chr1	92200627	.	T	C	636.52	PASS	AC=2;AF=0.977;AN=2;DP=1082;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:591,51,0:0,0,4,13
chr1	92224067	.	C	T	465.64	PASS	AC=1;AF=0.524;AN=2;DP=737;MQ=60;set=variant2-variant3-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant30-variant31-variant32-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:358,0,748:18,9,11,4
chr1	92224347	.	G	A	633.09	PASS	AC=1;AF=0.5;AN=2;DP=921;MQ=60;set=variant2-variant15-variant16-variant19-variant24-variant30-variant31-variant32-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:931,0,1335:30,26,19,22
chr1	92414916	.	C	T	77.94	PASS	AC=2;AF=0.672;AN=2;DP=409;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:493,48,0:0,0,11,5
chr1	92414993	.	T	C	772.68	PASS	AC=2;AF=0.829;AN=2;DP=1335;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1480,132,0:0,0,30,14
chr1	92415118	.	C	A	1727.51	PASS	AC=2;AF=0.829;AN=2;DP=2881;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2350,223,0:0,0,38,37
chr1	92428495	.	C	A	1249.44	PASS	AC=2;AF=0.895;AN=2;DP=1350;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:998,95,0:0,0,11,21
chr1	92446112	.	T	C	436.35	PASS	AC=2;AF=0.826;AN=2;DP=554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:424,42,0:0,0,9,5
chr1	92446398	.	T	A	3255.89	PASS	AC=2;AF=0.833;AN=2;DP=3401;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3388,339,0:0,0,64,49
chr1	92447004	.	A	G	669.12	PASS	AC=2;AF=0.837;AN=2;DP=799;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:971,75,0:0,0,11,14
chr1	92457843	.	C	T	1518.79	PASS	AC=2;AF=0.837;AN=2;DP=1919;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1832,188,0:0,0,39,24
chr1	92457969	.	CAAA	CAA,CA,C	250.7	PASS	AC=1,0,0;AF=0.415,0.171,0.073;AN=2;DP=1726;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:43:99:5,8,14,16
chr1	92508281	.	CAA	CAAA,CA,C	33.75	PASS	AC=0,1,0;AF=0.182,0.273,0.045;AN=2;DP=106;set=variant8-variant11-variant12-variant15-variant16-variant24-variant27-variant28-variant29-variant32-variant33	GT:DP:GQ:SB	0/2:6:24:2,1,3,0
chr1	92568263	.	A	G	600.67	PASS	AC=2;AF=0.821;AN=2;DP=1478;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1962,192,0:0,0,22,42
chr1	92573670	.	G	A	923.61	PASS	AC=1;AF=0.591;AN=2;DP=1028;MQ=60;set=variant-variant6-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant24-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,41:73:99:931,0,770:12,20,14,27
chr1	92605215	.	CTT	C	331.52	PASS	AC=2;AF=0.821;AN=2;DP=1113;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1285,87,0:0,0,12,17
chr1	92605350	.	G	T	157.4	PASS	AC=2;AF=0.986;AN=2;DP=204;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;ReadPosRankSum=-1.517;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:285,30,0:0,0,4,6
chr1	92646021	.	G	A	1277.57	PASS	AC=2;AF=0.821;AN=2;DP=3259;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2887,273,0:0,0,47,44
chr1	92647223	.	A	G	770.78	PASS	AC=2;AF=0.859;AN=2;DP=1976;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2278,207,0:0,0,40,29
chr1	92647516	.	C	T	1199.06	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.967;QD=10.9;ReadPosRankSum=-1.039;SOR=0.716;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:64,46:110:99:1227,0,1482:33,31,24,22
chr1	92647532	.	C	A	3328.25	PASS	AC=2;AF=0.977;AN=2;DP=4440;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3325,332,0:0,0,61,50
chr1	92649292	.	A	T	399.36	PASS	AC=2;AF=0.859;AN=2;DP=504;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:621,45,0:0,0,14,1
chr1	92649312	.	G	GTT,GT	257.65	PASS	AC=1,0;AF=0.457,0.3;AN=2;DP=647;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:17:52:2,1,12,2
chr1	92649335	.	A	G	462.7	PASS	AC=2;AF=0.859;AN=2;DP=1202;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1458,122,0:0,0,28,12
chr1	92650349	.	C	T	1792.76	PASS	AC=2;AF=0.859;AN=2;DP=2924;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3790,326,0:0,0,23,86
chr1	92711067	.	A	T	653.43	PASS	AC=1;AF=0.697;AN=2;DP=1535;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1009,0,839:21,11,25,15
chr1	92711972	.	C	G	197.8	PASS	AC=1;AF=0.692;AN=2;DP=299;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant27-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:93:93,0,242:6,4,3,0
chr1	92712266	.	C	T	2020.3	PASS	AC=2;AF=1;AN=2;DP=2533;FS=0;MQRankSum=-0.65;ReadPosRankSum=1.66;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1918,192,0:0,0,31,33
chr1	92712598	.	GAA	G	1128.69	PASS	AC=1;AF=0.682;AN=2;DP=2957;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,60:115:99:2341,0,2085:28,27,34,26
chr1	92735359	.	T	C	496.3	PASS	AC=1;AF=0.682;AN=2;DP=1985;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,36:93:99:810,0,1315:25,32,13,23
chr1	92755943	.	G	A	181.76	PASS	AC=1;AF=0.721;AN=2;DP=414;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:348,0,172:0,5,2,9
chr1	92764828	.	T	A	576.54	PASS	AC=2;AF=1;AN=2;DP=1315;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1295,114,0:0,0,12,26
chr1	92765848	.	A	T	907.3	PASS	AC=1;AF=0.682;AN=2;DP=2473;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,62:118:99:1659,0,1321:22,34,25,37
chr1	92799151	.	C	T	892.82	PASS	AC=1;AF=0.866;AN=2;DP=626;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:405,0,166:0,5,0,10
chr1	92852504	.	A	G	1851.13	PASS	AC=1;AF=0.866;AN=2;DP=1923;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:749,0,635:17,10,18,11
chr1	92940850	.	G	T	719.12	PASS	AC=1;AF=0.708;AN=2;DP=534;MQ=60;set=variant-variant4-variant6-variant11-variant12-variant15-variant18-variant19-variant27-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,13:43:99:363,0,744:15,15,6,7
chr1	92941357	.	A	G	1676.83	PASS	AC=1;AF=0.803;AN=2;DP=2073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:641,0,920:20,17,15,8
chr1	92944314	.	CAGAGAGAGAG	CAGAGAGAGAGAGAGAG,CAGAG,CAGAGAGAGAGAGAGAGAGAG,CAGAGAGAG,CAGAGAGAGAGAGAG,C,CAGAGAG,CAGAGAGAGAGAG,CAGAGAGAGAGAGAGAGAGAGAG	433.03	PASS	AC=1,0,0,0,0,0,0,0,0;AF=0.244,0.037,0.037,0.207,0.085,0.024,0.037,0.049,0.024;AN=2;DP=1845;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:15:99:0,5,1,9
chr1	92946479	.	G	A	2506.75	PASS	AC=1;AF=0.829;AN=2;DP=3915;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,37:102:99:903,0,1717:39,26,22,15
chr1	92952217	.	CA	C	740.54	PASS	AC=2;AF=1;AN=2;DP=1214;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:816,63,0:0,0,15,6
chr1	92974595	.	G	A	4722.73	PASS	AC=1;AF=0.829;AN=2;DP=5738;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,91:199:99:2391,0,2572:54,54,43,48
chr1	92975050	.	A	AT	496.42	PASS	AC=1;AF=0.586;AN=2;DP=1225;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:217,0,414:5,17,5,8
chr1	92975244	.	T	A	3311.87	PASS	AC=1;AF=0.784;AN=2;DP=3192;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,52:103:99:1365,0,1259:25,26,28,24
chr1	92975262	.	C	A	3391.2	PASS	AC=1;AF=0.784;AN=2;DP=3355;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,57:109:99:1549,0,1221:23,29,31,26
chr1	92975493	.	A	G	5741.01	PASS	AC=1;AF=0.795;AN=2;DP=5927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,104:194:99:2610,0,2374:53,37,60,44
chr1	92975938	.	T	C	12963.7	PASS	AC=1;AF=0.784;AN=2;DP=12412;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:223,193:416:99:4920,0,5778:118,105,95,98
chr1	92976023	.	T	G	13045.3	PASS	AC=1;AF=0.829;AN=2;DP=14186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:258,200:458:99:5110,0,6442:130,128,99,101
chr1	92976590	.	G	A	1497.69	PASS	AC=1;AF=0.829;AN=2;DP=2300;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,36:70:99:921,0,813:19,15,23,13
chr1	92977275	.	A	G	1616.84	PASS	AC=1;AF=0.829;AN=2;DP=1602;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:679,0,509:15,3,18,5
chr1	92978722	.	TA	T	3169.12	PASS	AC=1;AF=0.792;AN=2;DP=3418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,47:102:99:999,0,1224:40,15,33,14
chr1	92979124	.	G	A	99.47	PASS	AC=1;AF=0.854;AN=2;DP=165;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:62:62,0,117:4,0,2,0
chr1	92979354	.	A	G	3584.46	PASS	AC=1;AF=0.829;AN=2;DP=6177;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,65:176:99:1591,0,2722:50,61,27,38
chr1	92979681	.	TTA	T	130.95	PASS	AC=1;AF=0.846;AN=2;DP=407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:280,0,165:1,4,3,5
chr1	93029453	.	A	G	546.35	PASS	AC=1;AF=0.829;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:321,0,255:0,7,4,8
chr1	93029479	.	A	T	178.71	PASS	AC=1;AF=0.6;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant10-variant15-variant23	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:151,0,28:0,1,1,4
chr1	93071048	.	G	T	1391.68	PASS	AC=1;AF=0.884;AN=2;DP=1428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:317,0,602:6,14,4,9
chr1	93089823	.	T	C	2648.6	PASS	AC=1;AF=0.884;AN=2;DP=2892;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1197,0,1087:19,24,20,30
chr1	93128854	.	A	G	1035.94	PASS	AC=1;AF=0.884;AN=2;DP=1329;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:532,0,472:12,10,13,10
chr1	93160902	.	T	C	4266.85	PASS	AC=1;AF=0.884;AN=2;DP=4836;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,70:153:99:1669,0,1956:32,51,29,41
chr1	93163385	.	A	G	2269.55	PASS	AC=1;AF=0.784;AN=2;DP=2057;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1012,0,1227:28,17,23,21
chr1	93163633	.	C	T	773.56	PASS	AC=1;AF=0.893;AN=2;DP=580;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:225,0,160:0,6,1,6
chr1	93167610	.	C	T	106.77	PASS	AC=1;AF=0.902;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:284,0,396:10,0,8,1
chr1	93167854	.	A	G	1320.16	PASS	AC=2;AF=0.895;AN=2;DP=1552;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:995,90,0:0,0,8,22
chr1	93306317	.	G	A	1665.5	PASS	AC=1;AF=0.731;AN=2;DP=6441;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,91:236:99:2021,0,3593:71,74,44,47
chr1	93307908	.	T	A	10364.8	PASS	AC=1;AF=0.878;AN=2;DP=11874;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,152:347:99:3718,0,5028:96,99,75,77
chr1	93308168	.	T	TA	2521.14	PASS	AC=1;AF=0.75;AN=2;DP=7769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,102:221:99:3142,0,3731:56,63,51,51
chr1	93308798	.	G	A	1984.78	PASS	AC=1;AF=0.886;AN=2;DP=2915;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,52:99:99:1476,0,1232:17,30,19,33
chr1	93308853	.	C	A	1291.37	PASS	AC=1;AF=0.884;AN=2;DP=1660;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,38:63:99:1078,0,703:4,21,12,26
chr1	93311065	.	GAAAA	GAA,GA,GAAA,G	132.86	PASS	AC=1,0,0,0;AF=0.309,0.118,0.088,0.059;AN=2;DP=657;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:9:61:0,4,4,1
chr1	93426866	.	T	C	2951.9	PASS	AC=2;AF=1;AN=2;DP=4185;FS=0;MQ=60;MQRankSum=-1.022;ReadPosRankSum=1.89;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:5093,417,0:0,0,83,53
chr1	93426869	.	G	C	1854.4	PASS	AC=1;AF=0.878;AN=2;DP=4138;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,77:143:99:1855,0,1450:39,27,47,30
chr1	93545157	.	G	A	2958.15	PASS	AC=2;AF=0.966;AN=2;DP=4527;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3924,317,0:0,0,67,40
chr1	93580581	.	G	C	4494.87	PASS	AC=2;AF=1;AN=2;DP=5718;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4222,451,0:0,0,85,66
chr1	93580992	.	C	T	1810.69	PASS	AC=2;AF=0.857;AN=2;DP=3198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2652,246,0:0,0,56,26
chr1	93581024	.	T	C	926.9	PASS	AC=2;AF=0.713;AN=2;DP=4637;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4211,409,0:0,0,87,50
chr1	93583818	.	CTT	CT,C,CTTTTT	144.68	PASS	AC=2,0,0;AF=0.636,0.045,0.015;AN=2;DP=402;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:6:17:0,0,6,0
chr1	93602194	.	C	T	994.85	PASS	AC=2;AF=0.905;AN=2;DP=4249;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3975,395,0:0,0,81,51
chr1	93602814	.	A	G	2034.59	PASS	AC=1;AF=0.5;AN=2;DP=1437;MQ=60;set=variant-variant3-variant5-variant6-variant15-variant23-variant29-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:105,109:214:99:2811,0,2765:70,35,70,39
chr1	93603183	.	C	CAT,CATGTGTATATATATACACACAT	5183.81	PASS	AC=2,0;AF=0.893,0.012;AN=2;DP=10546;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:308:99:0,0,160,148
chr1	93616202	.	T	C	8289.29	PASS	AC=2;AF=0.75;AN=2;DP=24902;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,764:765:99:24039,2248,0:1,0,366,398
chr1	93617403	.	T	G	2444.27	PASS	AC=2;AF=0.775;AN=2;DP=9739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,283:283:99:8821,847,0:0,0,129,154
chr1	93617546	.	T	C	6700.16	PASS	AC=2;AF=0.881;AN=2;DP=7640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:7181,692,0:0,0,116,115
chr1	93620393	.	G	A	2481.89	PASS	AC=2;AF=0.713;AN=2;DP=7273;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,235:237:99:7814,662,0:1,1,71,164
chr1	93621483	.	A	G	272.85	PASS	AC=2;AF=0.75;AN=2;DP=1023;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1429,126,0:0,0,29,13
chr1	93646207	.	T	C	4171.66	PASS	AC=2;AF=0.75;AN=2;DP=11363;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,315:315:99:10031,941,0:0,0,174,141
chr1	93646418	.	C	T	3003.28	PASS	AC=1;AF=0.569;AN=2;DP=10421;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant33-variant35-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:221,201:422:99:4621,0,4992:94,127,84,117
chr1	93648810	.	A	G	718.93	PASS	AC=1;AF=0.5;AN=2;DP=189;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant25-variant26-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:747,0,599:16,5,21,3
chr1	93648816	.	A	G	1565.08	PASS	AC=2;AF=0.881;AN=2;DP=1873;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1994,150,0:0,0,41,9
chr1	93649732	.	A	G	484.29	PASS	AC=2;AF=0.763;AN=2;DP=804;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1555,123,0:0,0,6,35
chr1	93659350	.	A	T	1043.39	PASS	AC=2;AF=0.89;AN=2;DP=1006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1244,114,0:0,0,11,27
chr1	93672723	.	A	C	1818.47	PASS	AC=2;AF=0.857;AN=2;DP=2385;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2554,258,0:0,0,51,35
chr1	93676314	.	A	G	303.31	PASS	AC=2;AF=0.75;AN=2;DP=1072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:848,69,0:0,0,19,4
chr1	93676522	.	GT	G	298.59	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=1.264;FractionInformativeReads=0.86;MQ=60;MQRankSum=0.267;QD=5.24;ReadPosRankSum=0.245;SOR=0.418;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:33,16:49:99:336,0,899:10,23,6,10
chr1	93676578	.	A	G	398.69	PASS	AC=2;AF=0.713;AN=2;DP=963;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:599,42,0:0,0,2,12
chr1	93711782	.	T	A	1084.44	PASS	AC=1;AF=0.653;AN=2;DP=2680;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:853,0,1035:19,25,15,21
chr1	93811569	.	A	G	1682.11	PASS	AC=2;AF=0.775;AN=2;DP=5999;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5004,493,0:0,0,93,72
chr1	93826600	.	A	AGGG,AGG,AGGGG	2132.74	PASS	AC=1,1,0;AF=0.613,0.088,0.05;AN=2;DP=5808;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:122:99:0,0,87,35
chr1	93827456	.	T	A	8583.64	PASS	AC=2;AF=0.881;AN=2;DP=9354;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,247:249:99:8061,696,0:1,1,92,155
chr1	93827995	.	C	CT,CTT	908.7	PASS	AC=2,0;AF=0.714,0.024;AN=2;DP=2007;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:58:48:2,4,25,27
chr1	93998640	.	AT	A	1364.17	PASS	AC=1;AF=0.684;AN=2;DP=2811;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1370,0,966:6,26,16,27
chr1	94012287	.	G	A	462.99	PASS	AC=1;AF=0.85;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:262,0,151:4,1,7,0
chr1	94041787	.	G	GAC	3454.94	PASS	AC=2;AF=0.909;AN=2;DP=3792;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:4332,304,0:0,0,39,62
chr1	94054382	.	T	C	376.29	PASS	AC=2;AF=0.73;AN=2;DP=1196;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1210,117,0:0,0,24,15
chr1	94057720	.	T	A	223.42	PASS	AC=2;AF=0.684;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant12-variant13-variant15-variant18-variant19-variant20-variant23-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:496,36,0:0,0,10,2
chr1	94146773	.	G	A	943.89	PASS	AC=1;AF=0.563;AN=2;DP=1033;MQ=60;set=variant2-variant9-variant12-variant13-variant15-variant19-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,39:59:99:1005,0,507:10,10,17,22
chr1	94147019	.	A	G	153.74	PASS	AC=1;AF=0.607;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant12-variant13-variant15-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:128,0,301:4,7,2,3
chr1	94312482	.	T	TC	1637.7	PASS	AC=2;AF=1;AN=2;DP=5512;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:4561,367,0:0,0,58,64
chr1	94312528	.	G	GC	1548.51	PASS	AC=2;AF=1;AN=2;DP=4706;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3504,258,0:0,0,33,53
chr1	94312533	.	G	GC	1387.08	PASS	AC=2;AF=1;AN=2;DP=3709;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3193,217,0:0,0,19,49
chr1	94312542	.	G	GC	1267.73	PASS	AC=2;AF=1;AN=2;DP=3320;FS=0;MQ=60;MQRankSum=-1.091;ReadPosRankSum=-1.561;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2655,178,0:0,0,16,37
chr1	94312544	.	G	GC	1267.73	PASS	AC=2;AF=1;AN=2;DP=3156;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:2430,163,0:0,0,13,32
chr1	94312554	.	A	AG	1087.73	PASS	AC=2;AF=1;AN=2;DP=2896;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1845,123,0:0,0,14,27
chr1	94312558	.	G	GC	952.73	PASS	AC=2;AF=0.716;AN=2;DP=2201;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1845,123,0:0,0,14,26
chr1	94312566	.	G	T	916.77	PASS	AC=2;AF=0.716;AN=2;DP=2098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1665,111,0:0,0,14,22
chr1	94312567	.	T	C	916.77	PASS	AC=2;AF=0.716;AN=2;DP=2091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1665,111,0:0,0,14,23
chr1	94312571	.	G	GC	952.73	PASS	AC=2;AF=0.716;AN=2;DP=2044;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1620,108,0:0,0,13,21
chr1	94312573	.	G	GC	907.73	PASS	AC=2;AF=0.716;AN=2;DP=2000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1575,105,0:0,0,13,20
chr1	94312576	.	G	GC	817.73	PASS	AC=2;AF=1;AN=2;DP=2478;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1575,105,0:0,0,14,20
chr1	94312579	.	G	GC,GT	817.73	PASS	AC=2,0;AF=0.602,0.398;AN=2;DP=2357;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:34:99:0,0,15,19
chr1	94312584	.	G	GC	582.7	PASS	AC=2;AF=1;AN=2;DP=2235;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:96:1439,96,0:0,0,14,17
chr1	94334766	.	T	TA	367.21	PASS	AC=1;AF=0.775;AN=2;DP=2025;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:562,0,754:11,15,9,12
chr1	94343233	.	T	C	2428.49	PASS	AC=1;AF=0.776;AN=2;DP=5899;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,100:193:99:2546,0,2448:44,49,48,52
chr1	94344580	.	C	A	1211.26	PASS	AC=1;AF=0.548;AN=2;DP=4406;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,71:172:99:1947,0,2837:73,28,52,19
chr1	94344840	.	A	C	1870.96	PASS	AC=1;AF=0.542;AN=2;DP=3565;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,89:177:99:2652,0,2676:14,74,19,70
chr1	94351062	.	TAA	T	1918.38	PASS	AC=1;AF=0.542;AN=2;DP=1563;set=variant-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,36:82:99:1329,0,1926:32,14,26,10
chr1	94351328	.	C	T	5648.77	PASS	AC=1;AF=0.569;AN=2;DP=12384;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:267,263:530:99:6402,0,6998:133,134,125,138
chr1	94351768	.	CT	CTT,C,CTTT	3340.2	PASS	AC=1,0,0;AF=0.483,0.069,0.017;AN=2;DP=9800;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:368:99:91,116,63,98
chr1	94352237	.	G	GT	2103.37	PASS	AC=1;AF=0.578;AN=2;DP=7699;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:139,128:267:99:2823,0,3133:72,67,56,72
chr1	94352553	.	C	CTTTT,CTT,CTTT,CTTTTT	59.5	PASS	AC=0,0,1,0;AF=0.125,0.25,0.125,0.125;AN=2;DP=38;set=variant2-variant8-variant15-variant41	GT:DP:GQ:SB	0/3:10:66:1,3,2,4
chr1	94353029	.	G	GT,GTT	276.29	PASS	AC=1,0;AF=0.577,0.051;AN=2;DP=2677;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:47:99:4,18,7,18
chr1	94353449	.	G	T	1763.29	PASS	AC=1;AF=0.569;AN=2;DP=4596;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:114,72:186:99:1791,0,3199:67,47,44,28
chr1	94353573	.	C	T	4647.45	PASS	AC=1;AF=0.569;AN=2;DP=12112;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:254,236:490:99:5542,0,6246:129,125,127,109
chr1	94360107	.	C	A	397.4	PASS	AC=1;AF=0.542;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:644,0,792:21,6,16,9
chr1	94367097	.	G	A	644.78	PASS	AC=1;AF=0.571;AN=2;DP=1089;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:517,0,371:10,9,10,11
chr1	94374576	.	G	A	1112.09	PASS	AC=1;AF=0.5;AN=2;DP=1413;MQ=60;set=variant4-variant6-variant8-variant10-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,44:94:99:1055,0,1141:28,22,25,19
chr1	94374742	.	C	A	1595.69	PASS	AC=1;AF=0.5;AN=2;DP=1554;MQ=60;set=variant4-variant6-variant8-variant10-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,59:99:99:1265,0,956:17,23,27,32
chr1	94471075	.	A	G	4479.85	PASS	AC=2;AF=0.915;AN=2;DP=5345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5774,563,0:0,0,85,103
chr1	94476555	.	G	A	109.23	PASS	AC=2;AF=0.819;AN=2;DP=590;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:613,45,0:0,0,1,14
chr1	94480037	.	C	T	371.57	PASS	AC=1;AF=0.594;AN=2;DP=1754;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:770,0,888:20,13,17,13
chr1	94487354	.	G	A	2004.63	PASS	AC=1;AF=0.706;AN=2;DP=4669;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,78:159:99:1974,0,1857:44,37,46,32
chr1	94495407	.	C	T	491.68	PASS	AC=1;AF=0.603;AN=2;DP=1403;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,25:38:99:937,0,419:6,7,9,16
chr1	94495417	.	C	T	403.42	PASS	AC=1;AF=0.603;AN=2;DP=1260;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:917,0,357:5,5,8,13
chr1	94495487	.	G	A	73.33	PASS	AC=1;AF=0.609;AN=2;DP=410;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:231,0,109:0,3,1,5
chr1	94495930	.	T	C	310.28	PASS	AC=2;AF=0.977;AN=2;DP=1584;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1667,132,0:0,0,36,8
chr1	94496253	.	G	A	673.91	PASS	AC=1;AF=0.618;AN=2;DP=1924;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,33:73:99:790,0,1132:10,30,7,26
chr1	94497178	.	G	A	482.4	PASS	AC=1;AF=0.692;AN=2;DP=1899;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:636,0,908:21,12,17,9
chr1	94511533	.	G	A	952.23	PASS	AC=1;AF=0.713;AN=2;DP=3046;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,49:105:99:1334,0,1609:15,41,11,38
chr1	94528363	.	C	T	268.06	PASS	AC=1;AF=0.575;AN=2;DP=1190;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant11-variant15-variant16-variant23-variant27-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:974,0,844:13,21,12,21
chr1	94544117	.	T	C	157.29	PASS	AC=1;AF=0.5;AN=2;DP=36;MQ=60;set=variant8-variant15	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:65:65,0,69:1,2,3,0
chr1	94544122	.	T	C	157.3	PASS	AC=1;AF=0.5;AN=2;DP=40;MQ=60;set=variant8-variant15	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:59:59,0,134:3,2,3,0
chr1	94544135	.	A	AC	259.88	PASS	AC=2;AF=0.803;AN=2;DP=933;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:371,36,0:0,0,7,5
chr1	94544276	.	G	A	709.48	PASS	AC=2;AF=0.654;AN=2;DP=2299;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2505,257,0:0,0,42,44
chr1	94544326	.	GT	G	615.63	PASS	AC=2;AF=0.654;AN=2;DP=1588;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1987,164,0:0,0,22,33
chr1	94545160	.	C	T	431.31	PASS	AC=1;AF=0.568;AN=2;DP=909;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant18-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:639,0,553:11,10,10,15
chr1	94549083	.	T	C	507.26	PASS	AC=2;AF=0.782;AN=2;DP=1780;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1289,120,0:0,0,17,23
chr1	94568491	.	A	G	164.46	PASS	AC=1;AF=0.591;AN=2;DP=846;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant29-variant32-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:487,0,633:18,4,13,4
chr1	94568822	.	T	C	412.67	PASS	AC=1;AF=0.607;AN=2;DP=2295;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:935,0,976:14,25,12,23
chr1	94578548	.	T	C	1516.64	PASS	AC=2;AF=0.989;AN=2;DP=2134;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,66:67:99:2125,190,0:1,0,44,22
chr1	94638168	.	GAT	GATAT,GATATAT,GATATATAT,G,GATATATATAT	444.91	PASS	AC=1,0,0,0,0;AF=0.464,0.214,0.036,0.012,0.024;AN=2;DP=2286;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:99:4,3,6,13
chr1	94639337	.	A	G	8972.4	PASS	AC=2;AF=0.989;AN=2;DP=11704;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,342:343:99:10533,988,0:1,0,165,177
chr1	94639447	.	C	T	6647.57	PASS	AC=2;AF=0.966;AN=2;DP=8763;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:8131,715,0:0,0,114,125
chr1	94643531	.	T	C	1592.9	PASS	AC=1;AF=0.575;AN=2;DP=2739;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant26-variant27-variant30-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:68,87:155:99:2198,0,1569:37,31,47,40
chr1	94667430	.	G	GA	304.72	PASS	AC=2;AF=0.965;AN=2;DP=881;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:96:901,96,0:0,0,11,18
chr1	94668046	.	C	T	3666.02	PASS	AC=2;AF=0.966;AN=2;DP=5264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4011,373,0:0,0,58,67
chr1	94674723	.	G	A	1529.26	PASS	AC=2;AF=0.989;AN=2;DP=2119;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2698,213,0:0,0,42,28
chr1	94674726	.	T	C	570.55	PASS	AC=1;AF=0.55;AN=2;DP=1042;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant33-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,41:73:99:936,0,687:20,12,23,18
chr1	94883977	.	AGCC	A,AGCCGCCGCCGCCGCC,AGCCGCCGCC	40.27	PASS	AC=1,0,0;AF=0.469,0.016,0.016;AN=2;DP=2966;MQ=60;set=filterInvariant-filterInvariant4-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-variant12-filterInvariant13-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-variant32-variant35-variant37-variant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:133:99:63,40,16,14
chr1	94924046	.	A	G	252.34	PASS	AC=1;AF=0.621;AN=2;DP=695;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:275,0,591:14,6,7,5
chr1	94930345	.	G	A	1180.53	PASS	AC=1;AF=0.621;AN=2;DP=3375;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1217,0,1488:28,32,27,31
chr1	94941376	.	G	A	241.6	PASS	AC=1;AF=0.868;AN=2;DP=399;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,308:0,8,0,3
chr1	94980671	.	C	G	3614.65	PASS	AC=2;AF=1;AN=2;DP=4755;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4138,425,0:0,0,71,71
chr1	94982785	.	A	T	786.39	PASS	AC=1;AF=0.6;AN=2;DP=580;MQ=60;set=variant-variant4-variant7-variant15-variant19-variant22-variant23-variant27-variant30-variant32-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:799,0,845:11,17,13,16
chr1	94983203	.	C	T	3313.7	PASS	AC=1;AF=0.611;AN=2;DP=3626;MQ=60;set=variant-variant4-variant7-variant10-variant15-variant19-variant22-variant23-variant27-variant30-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:120,142:262:99:3282,0,3052:51,69,67,75
chr1	94984052	.	TAA	TA,TAAA,T	789.96	PASS	AC=1,0,0;AF=0.489,0.023,0.068;AN=2;DP=5960;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:137:99:20,36,27,54
chr1	94995411	.	C	A	1207.81	PASS	AC=1;AF=0.575;AN=2;DP=1546;set=variant-variant4-variant7-variant15-variant18-variant19-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,44:69:99:1440,0,743:6,19,9,35
chr1	94995616	.	C	T	1334.42	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=0;set=variant15-variant20-variant38	GT:AD:DP:GQ:PL:SB	0/1:17,37:54:99:1363,0,591:17,0,37,0
chr1	94995629	.	CAAAAA	CAA,CA,CAAA,C	1218.1	PASS	AC=1,0,0,0;AF=0.295,0.321,0.064,0.026;AN=2;DP=4254;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:74:99:3,9,59,3
chr1	94995819	.	C	T	6410.1	PASS	AC=1;AF=0.579;AN=2;DP=8911;MQ=60;set=variant-variant4-variant7-variant15-variant18-variant19-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:271,278:549:99:6782,0,6880:126,145,135,143
chr1	95001600	.	A	C	4122.38	PASS	AC=2;AF=1;AN=2;DP=4923;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4194,422,0:0,0,77,64
chr1	95211285	.	C	T	43.51	PASS	AC=1;AF=0.581;AN=2;DP=536;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:352,0,307:7,3,9,3
chr1	95211525	.	G	A	732.89	PASS	AC=2;AF=0.8;AN=2;DP=3207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2687,275,0:0,0,42,50
chr1	95285887	.	C	G	412.62	PASS	AC=1;AF=0.553;AN=2;DP=296;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:150,0,252:5,2,4,2
chr1	95286094	.	G	T	3039.37	PASS	AC=2;AF=1;AN=2;DP=4872;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:3809,426,0:0,0,75,69
chr1	95286658	.	C	A	2370.54	PASS	AC=2;AF=0.811;AN=2;DP=3063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3258,302,0:0,0,44,57
chr1	95286675	.	GTCCCAAATGTAAA	G	3070.16	PASS	AC=2;AF=0.811;AN=2;DP=2936;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:4050,272,0:0,0,39,51
chr1	95290003	.	C	T	1831.44	PASS	AC=2;AF=0.811;AN=2;DP=2044;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2254,213,0:0,0,47,24
chr1	95290305	.	T	C	693.43	PASS	AC=2;AF=1;AN=2;DP=956;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.538;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1265,108,0:0,0,8,28
chr1	95291366	.	A	G	3052.93	PASS	AC=2;AF=0.989;AN=2;DP=3859;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3403,341,0:0,0,62,52
chr1	95291479	.	A	C	1351.66	PASS	AC=1;AF=0.5;AN=2;DP=1867;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,53:106:99:1367,0,1416:20,33,19,34
chr1	95293005	.	A	G	3430.09	PASS	AC=1;AF=0.5;AN=2;DP=3635;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:136,87:223:99:2063,0,3468:83,53,46,41
chr1	95294089	.	T	C	2076.06	PASS	AC=1;AF=0.5;AN=2;DP=2756;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,71:144:99:1603,0,1857:35,38,34,37
chr1	95305440	.	A	G	5763.57	PASS	AC=1;AF=0.682;AN=2;DP=5155;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,121:204:99:2824,0,2036:56,27,64,57
chr1	95330372	.	G	A	2928.94	PASS	AC=2;AF=0.732;AN=2;DP=4080;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,135:136:99:4035,397,0:0,1,77,58
chr1	95332814	.	C	T	462.72	PASS	AC=1;AF=0.528;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant22-variant34-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,15:44:99:361,0,785:20,9,11,4
chr1	95333068	.	G	T	1286.98	PASS	AC=1;AF=0.732;AN=2;DP=1850;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:636,0,924:12,21,9,17
chr1	95358096	.	A	G	3071.2	PASS	AC=1;AF=0.721;AN=2;DP=2913;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1349,0,1380:22,33,15,35
chr1	95360309	.	C	T	606.45	PASS	AC=1;AF=0.5;AN=2;DP=153;MQ=60;set=variant5-variant11-variant15-variant22-variant24-variant33	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:479,0,463:12,1,12,2
chr1	95360825	.	A	AT	2117.54	PASS	AC=2;AF=0.989;AN=2;DP=4137;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,87:90:99:2246,208,0:1,2,31,56
chr1	95362927	.	TAAAAA	T,TA,TAAAAAA,TAAA,TAAAA,TAA	3416.45	PASS	AC=1,0,0,0,0,1;AF=0.209,0.302,0.07,0.174,0.035,0.023;AN=2;DP=5420;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/6:78:99:5,6,37,30
chr1	95363698	.	A	G	373.61	PASS	AC=1;AF=0.5;AN=2;DP=140;MQ=60;set=variant5-variant11-variant15-variant22-variant24-variant33	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:273,0,184:2,4,1,6
chr1	95365257	.	AT	A	225.4	PASS	AC=1;AF=0.721;AN=2;DP=759;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:341,0,294:2,9,5,8
chr1	95367108	.	ACC	A,AC	353.37	PASS	AC=1,0;AF=0.598,0.232;AN=2;DP=439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:13:0:1,0,9,3
chr1	95367136	.	G	A	794.03	PASS	AC=2;AF=1;AN=2;DP=930;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:735,63,0:0,0,16,5
chr1	95367649	.	T	C	2740.86	PASS	AC=1;AF=0.721;AN=2;DP=3286;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,75:123:99:1869,0,1223:26,22,37,38
chr1	95367894	.	A	C	1601.44	PASS	AC=2;AF=0.893;AN=2;DP=1635;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1607,153,0:0,0,17,34
chr1	95368998	.	T	C	1295.97	PASS	AC=1;AF=0.5;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,52:116:99:1324,0,1703:43,21,35,17
chr1	95369211	.	T	G	2421.36	PASS	AC=2;AF=0.93;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2928,274,0:0,0,33,59
chr1	95428455	.	CT	C,CTT	130.61	PASS	AC=0,1;AF=0.044,0.471;AN=2;DP=2041;set=filterInvariant-filterInvariant2-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant13-variant14-filterInvariant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:66:86:34,20,9,3
chr1	95448255	.	C	CAA,CA	61.79	PASS	AC=1,0;AF=0.25,0.292;AN=2;DP=120;set=variant3-variant7-variant9-variant11-variant15-variant20-variant24-variant25-variant31-variant33-variant39-variant43	GT:DP:GQ:SB	0/1:6:39:2,0,3,1
chr1	95583090	.	G	C	968.05	PASS	AC=2;AF=1;AN=2;DP=1897;FS=0;MQ=60;MQRankSum=-0.657;ReadPosRankSum=1.614;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1387,138,0:0,0,22,24
chr1	95583394	.	A	C	152.99	PASS	AC=2;AF=1;AN=2;DP=488;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:366,30,0:0,0,7,3
chr1	95583772	.	T	G	118.69	PASS	AC=2;AF=0.595;AN=2;DP=275;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:686,57,0:0,0,5,14
chr1	95658345	.	AT	A	3474.27	PASS	AC=2;AF=1;AN=2;DP=6724;MQ=60;MQRankSum=-1.635;ReadPosRankSum=2.418;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5945,562,0:0,0,76,111
chr1	95658500	.	C	T	4133.04	PASS	AC=1;AF=0.55;AN=2;DP=6069;MQ=60;set=variant5-variant8-variant11-variant12-variant15-variant16-variant19-variant23-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,182:353:99:4743,0,4560:99,72,110,72
chr1	95658770	.	T	C	3052.01	PASS	AC=1;AF=0.604;AN=2;DP=5921;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant11-variant12-variant15-variant16-variant19-variant22-variant23-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,117:274:99:3035,0,4263:65,92,41,76
chr1	95660024	.	AC	A	1798.99	PASS	AC=1;AF=0.55;AN=2;DP=1861;MQ=60;set=variant5-variant8-variant11-variant12-variant15-variant16-variant19-variant23-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,42:107:99:1377,0,2231:16,49,12,30
chr1	95663066	.	C	A	1821.13	PASS	AC=1;AF=0.5;AN=2;DP=340;MQ=60;set=variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:99,77:176:99:1849,0,2333:40,59,27,50
chr1	95696612	.	C	T	719.18	PASS	AC=1;AF=0.619;AN=2;DP=1427;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant11-variant15-variant16-variant19-variant20-variant23-variant27-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1111,0,1231:12,30,10,30
chr1	95699594	.	A	G	106.77	PASS	AC=2;AF=0.898;AN=2;DP=894;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1694,117,0:0,0,22,17
chr1	95699604	.	G	C	106.77	PASS	AC=2;AF=0.909;AN=2;DP=974;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1844,129,0:0,0,26,16
chr1	95700044	.	G	C	115.68	PASS	AC=1;AF=0.594;AN=2;DP=287;MQ=60;set=variant-variant5-variant8-variant11-variant15-variant16-variant19-variant23-variant27-variant31-variant33-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:206,0,383:3,10,1,6
chr1	95705615	.	G	A	1390.44	PASS	AC=2;AF=0.943;AN=2;DP=1679;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1247,107,0:0,0,9,27
chr1	95709821	.	T	C	5035.81	PASS	AC=2;AF=1;AN=2;DP=6731;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,181:181:99:5351,541,0:0,0,89,92
chr1	95709939	.	T	G	4372.54	PASS	AC=2;AF=0.909;AN=2;DP=5318;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4935,471,0:0,0,78,79
chr1	95712797	.	G	A	514.8	PASS	AC=2;AF=0.898;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1058,87,0:0,0,5,24
chr1	96457465	.	C	T	192.31	PASS	AC=2;AF=0.81;AN=2;DP=570;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:756,69,0:0,0,17,6
chr1	96457579	.	T	C	1625.38	PASS	AC=2;AF=0.606;AN=2;DP=2021;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2897,249,0:0,0,59,24
chr1	96457634	.	G	C	2683.05	PASS	AC=1;AF=0.5;AN=2;DP=1092;MQ=60;set=variant3-variant9-variant15-variant16-variant17-variant29	GT:AD:DP:GQ:PL:SB	0/1:109,100:209:99:2818,0,2999:74,35,72,28
chr1	96488081	.	T	C	2790.31	PASS	AC=2;AF=0.614;AN=2;DP=3135;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3857,333,0:0,0,83,28
chr1	96488261	.	A	T	8830.38	PASS	AC=2;AF=0.943;AN=2;DP=10501;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,255:255:99:8002,765,0:0,0,126,129
chr1	96488272	.	C	A	8693.69	PASS	AC=2;AF=0.614;AN=2;DP=8546;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,270:270:99:8218,807,0:0,0,135,135
chr1	96488283	.	T	C	8993.11	PASS	AC=2;AF=1;AN=2;DP=11077;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,283:283:99:8752,848,0:0,0,144,139
chr1	97189091	.	G	A	1821.83	PASS	AC=2;AF=0.765;AN=2;DP=4769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5211,533,0:0,0,91,87
chr1	97189288	.	T	A	117.12	PASS	AC=2;AF=0.604;AN=2;DP=449;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant30-variant32-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:671,48,0:0,0,0,16
chr1	97236130	.	G	A	84.41	PASS	AC=2;AF=0.848;AN=2;DP=136;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant31-variant32-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,3,1
chr1	97243023	.	A	G	233.14	PASS	AC=1;AF=0.5;AN=2;DP=116;MQ=60;set=variant8-variant9-variant15-variant17-variant19-variant23-variant32	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:421,0,368:10,1,10,3
chr1	97278804	.	G	A	358.52	PASS	AC=2;AF=0.765;AN=2;DP=1189;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1430,123,0:0,0,24,17
chr1	97279217	.	CTTTTTTTTTTT	CTTTTTTTTTT,CTTTTTT,C,CTTTTTTTTTTTT,CTTTTT,CTTTTTTTTTTTTTTTTTTTTT,CTTTT,CTTTTTTTTTTTTT,CTTTTTTTTT	163.08	PASS	AC=0,1,0,0,1,0,0,0,0;AF=0.063,0.3,0.013,0.075,0.05,0.013,0.013,0.013,0.013;AN=2;DP=7235;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	5/2:203:99:25,8,74,96
chr1	97279692	.	C	T	7170.28	PASS	AC=2;AF=0.765;AN=2;DP=19316;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,669:669:99:20906,2003,0:0,0,323,346
chr1	97280132	.	A	T	1266.14	PASS	AC=1;AF=0.5;AN=2;DP=741;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant15-variant17-variant19-variant23-variant32	GT:AD:DP:GQ:PL:SB	0/1:58,65:123:99:1614,0,1523:26,32,35,30
chr1	97543470	.	T	C	407.52	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:713,0,317:7,10,10,17
chr1	97547831	.	G	A	2073.89	PASS	AC=2;AF=1;AN=2;DP=1848;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.034;ReadPosRankSum=-1.152;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1633,144,0:0,0,35,13
chr1	97771947	.	C	A	222.1	PASS	AC=1;AF=0.54;AN=2;DP=580;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:329,0,346:3,10,1,9
chr1	97981242	.	T	C	106.77	PASS	AC=1;AF=0.74;AN=2;DP=150;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant15-variant16-variant17-variant21-variant22-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,122:3,0,2,0
chr1	98185527	.	A	G	9765.81	PASS	AC=2;AF=1;AN=2;DP=13996;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,406:406:99:11868,1214,0:0,0,197,209
chr1	98185720	.	TCA	TCACA,T	650.31	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=200;set=variant15-variant22-variant30	GT:DP:GQ:SB	0/1:67:99:17,18,13,19
chr1	98186077	.	T	C	11197.5	PASS	AC=2;AF=1;AN=2;DP=14686;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,407:407:99:12382,1220,0:0,0,232,175
chr1	98348885	.	G	A	2346.7	PASS	AC=1;AF=0.875;AN=2;DP=3429;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,48:100:99:1107,0,1238:21,31,20,28
chr1	98349390	.	C	CA,CAA	458.52	PASS	AC=2,0;AF=0.864,0.045;AN=2;DP=1432;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:35:99:0,0,18,17
chr1	98511733	.	G	GCCGCTGCCGCTGCTACCGCTGCCGCTGCTACCGCTGCCGCTGCTA,GCCGCTGCCGCTGCTACCGCTGCCGCTGCTA,GCCGCTGCCGCTGCTA,GCCGCTGCCGCTGCTACCGCTGCCGCTGCTACCGCTGCCGCTGCTACCGCTGCCGCTGCTA	434.47	PASS	AC=0,1,0,0;AF=0.067,0.167,0.267,0.067;AN=2;DP=1435;set=variant-variant3-variant5-variant7-variant8-variant15-variant16-variant19-variant21-variant25-variant27-variant30-variant32-variant35-variant37	GT:DP:GQ:SB	0/2:69:99:24,22,7,16
chr1	99127205	.	A	G	247.45	PASS	AC=2;AF=0.942;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:729,72,0:0,0,16,8
chr1	99127392	.	T	C	2891.74	PASS	AC=2;AF=1;AN=2;DP=4498;FS=0;FractionInformativeReads=1;MQRankSum=1.447;ReadPosRankSum=0.688;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3048,317,0:0,0,59,47
chr1	99150635	.	G	A	2324.93	PASS	AC=2;AF=0.93;AN=2;DP=3443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2846,261,0:0,0,36,51
chr1	99161184	.	C	A	1688.61	PASS	AC=2;AF=0.75;AN=2;DP=107;FS=0;MQ=60;MQRankSum=1.44;ReadPosRankSum=-0.431;set=variant15-variant31	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1717,159,0:0,0,29,24
chr1	99225627	.	G	A	3372.65	PASS	AC=2;AF=0.989;AN=2;DP=4857;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4061,391,0:0,0,68,63
chr1	99356958	.	A	G	9680.75	PASS	AC=2;AF=0.854;AN=2;DP=9636;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,293:293:99:9242,877,0:0,0,132,161
chr1	99358358	.	G	T	968.14	PASS	AC=2;AF=0.7;AN=2;DP=4593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3897,386,0:0,0,67,62
chr1	99418647	.	G	C	821.8	PASS	AC=2;AF=0.595;AN=2;DP=1778;MQ=60;set=variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant18-variant19-variant21-variant24-variant26-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3609,321,0:0,0,70,37
chr1	99418948	.	T	TGTGTGA,TGTGA,TGTGTGTGA,TGA	362.04	PASS	AC=0,2,0,0;AF=0.38,0.2,0.02,0.1;AN=2;DP=599;set=variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant42	GT:DP:GQ:SB	2/2:19:57:0,0,2,17
chr1	99470236	.	C	T	2179.68	PASS	AC=1;AF=0.5;AN=2;DP=167;FS=1.995;FractionInformativeReads=1;MQ=60;MQRankSum=-0.307;QD=13.05;ReadPosRankSum=2.26;SOR=0.904;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:69,98:167:99:2208,0,1576:30,39,38,60
chr1	99753631	.	G	A	2446.14	PASS	AC=2;AF=0.667;AN=2;DP=547;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6672,640,0:0,0,119,95
chr1	99764303	.	T	C	1074.6	PASS	AC=2;AF=0.721;AN=2;DP=1491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1877,153,0:0,0,40,11
chr1	100111956	.	A	G	1082.62	PASS	AC=1;AF=0.545;AN=2;DP=1628;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:1074,0,1146:18,28,18,27
chr1	100152443	.	T	C	1131.61	PASS	AC=1;AF=0.656;AN=2;DP=2544;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1007,0,1065:19,22,22,19
chr1	100154554	.	C	A	1904.83	PASS	AC=1;AF=0.6;AN=2;DP=671;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant15-variant19-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,76:146:99:1962,0,1754:34,36,36,40
chr1	100160177	.	A	T	1646.34	PASS	AC=1;AF=0.676;AN=2;DP=5307;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,88:183:99:2216,0,2535:34,61,27,61
chr1	100181113	.	A	T	942.19	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=1.046;FractionInformativeReads=1;MQ=60;MQRankSum=3.012;QD=15.45;ReadPosRankSum=-3.362;SOR=0.473;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:970,0,602:18,8,22,13
chr1	100181124	.	T	A	826.99	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant4-variant15	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:704,0,1040:24,14,20,9
chr1	100182884	.	C	T	2070.9	PASS	AC=1;AF=0.559;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant27-variant28-variant29-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,24:60:99:687,0,1038:27,9,20,4
chr1	100185282	.	G	T	555.98	PASS	AC=1;AF=0.567;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant11-variant15-variant17-variant19-variant27-variant28-variant29-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:314,0,143:0,4,0,8
chr1	100194305	.	C	G	2592.48	PASS	AC=1;AF=0.614;AN=2;DP=1417;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1030,0,1113:14,30,15,27
chr1	100203501	.	C	T	554.21	PASS	AC=1;AF=0.6;AN=2;DP=323;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:287,0,433:11,2,8,0
chr1	100203571	.	A	G	1750.63	PASS	AC=1;AF=0.625;AN=2;DP=1009;FractionInformativeReads=1;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:637,0,982:24,15,17,9
chr1	100203597	.	G	A	2208.45	PASS	AC=1;AF=0.625;AN=2;DP=1366;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,31:78:99:688,0,1220:27,20,20,11
chr1	100203648	.	C	T	3169.78	PASS	AC=1;AF=0.625;AN=2;DP=1887;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,43:104:99:1120,0,1561:29,32,26,17
chr1	100203693	.	G	A	3254.98	PASS	AC=1;AF=0.625;AN=2;DP=2009;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,49:111:99:1145,0,1542:29,33,29,20
chr1	100212662	.	AAC	A	352.58	PASS	AC=1;AF=0.727;AN=2;DP=59;FS=0;MQ=60;set=variant7-variant10-variant13-variant15-variant17-variant19-variant29-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:187,0,108:3,0,4,1
chr1	100214391	.	T	A	5526.17	PASS	AC=1;AF=0.625;AN=2;DP=2602;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,90:159:99:2514,0,1949:53,16,55,35
chr1	100214487	.	C	T	10967	PASS	AC=1;AF=0.625;AN=2;DP=7374;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:226,202:428:99:4326,0,5156:125,101,106,96
chr1	100214578	.	G	A	6646.75	PASS	AC=1;AF=0.563;AN=2;DP=1892;set=variant4-variant7-variant15-variant17-variant19-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,109:273:99:2622,0,4166:64,100,40,69
chr1	100316589	.	A	G	2000.36	PASS	AC=1;AF=0.621;AN=2;DP=5003;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,84:180:99:1989,0,2611:43,53,40,44
chr1	100316765	.	C	T	1140.97	PASS	AC=2;AF=0.817;AN=2;DP=1867;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1804,159,0:0,0,13,40
chr1	100327026	.	C	T	1385.53	PASS	AC=1;AF=0.588;AN=2;DP=1875;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant15-variant18-variant21-variant22-variant27-variant30-variant32-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:66,76:142:99:1929,0,1695:35,31,37,39
chr1	100329889	.	G	C	3488.97	PASS	AC=2;AF=0.813;AN=2;DP=3360;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2713,270,0:0,0,57,33
chr1	100335883	.	A	G	341.62	PASS	AC=1;AF=0.594;AN=2;DP=941;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:496,0,369:11,1,14,2
chr1	100336361	.	C	T	1972.52	PASS	AC=2;AF=0.817;AN=2;DP=2489;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1547,153,0:0,0,30,21
chr1	100340225	.	G	A	1813.63	PASS	AC=2;AF=0.817;AN=2;DP=2967;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3436,338,0:0,0,71,42
chr1	100342227	.	C	T	732.03	PASS	AC=1;AF=0.657;AN=2;DP=1651;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,30:49:99:828,0,504:5,14,9,21
chr1	100345409	.	C	G	238.16	PASS	AC=1;AF=0.657;AN=2;DP=863;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:336,0,561:12,6,10,2
chr1	100346741	.	T	C	1368.33	PASS	AC=1;AF=0.657;AN=2;DP=2854;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,48:108:99:1243,0,1738:30,30,24,24
chr1	100350383	.	G	A	431.14	PASS	AC=1;AF=0.662;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:420,0,178:1,5,1,11
chr1	100353675	.	G	A	5773.43	PASS	AC=2;AF=0.775;AN=2;DP=7653;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,235:236:99:7211,669,0:1,0,105,130
chr1	100357141	.	T	A	637.43	PASS	AC=1;AF=0.657;AN=2;DP=1194;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:432,0,701:17,8,13,4
chr1	100358103	.	C	T	1355.67	PASS	AC=1;AF=0.571;AN=2;DP=1487;set=variant-variant2-variant5-variant6-variant8-variant9-variant15-variant18-variant21-variant27-variant30-variant32-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1364,0,1646:32,40,26,32
chr1	100358200	.	G	A	1269.9	PASS	AC=2;AF=0.775;AN=2;DP=1259;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1546,119,0:0,0,6,34
chr1	100366446	.	GTT	G,GTTT,GTTTT,GT	1463.34	PASS	AC=2,0,0,0;AF=0.659,0.037,0.012,0.024;AN=2;DP=2606;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:74:99:1,0,24,49
chr1	100376448	.	G	A	433.99	PASS	AC=1;AF=0.606;AN=2;DP=1683;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:946,0,1692:11,20,9,17
chr1	100376456	.	T	A	421.46	PASS	AC=1;AF=0.606;AN=2;DP=1558;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:931,0,1618:8,19,8,15
chr1	100381109	.	A	AT,ATT	54.15	PASS	AC=1,0;AF=0.6,0.02;AN=2;DP=386;MQ=60;set=variant2-variant3-variant6-variant7-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-filterInvariant28-variant29-variant31-variant34-variant36-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:13:99:1,6,2,4
chr1	100381869	.	G	A	88.49	PASS	AC=1;AF=0.62;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant9-variant12-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:356,0,177:5,0,9,2
chr1	100387939	.	C	T	1870.73	PASS	AC=2;AF=0.731;AN=2;DP=2170;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2592,234,0:0,0,33,45
chr1	100388235	.	C	T	724.1	PASS	AC=1;AF=0.606;AN=2;DP=2055;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:846,0,904:16,16,18,16
chr1	100388503	.	A	C	3284.57	PASS	AC=1;AF=0.594;AN=2;DP=8111;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,158:306:99:3995,0,3466:82,66,95,63
chr1	100388748	.	T	C	6176.29	PASS	AC=1;AF=0.591;AN=2;DP=13377;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:246,211:457:99:5277,0,6544:112,134,97,114
chr1	100435320	.	C	T	533.12	PASS	AC=1;AF=0.607;AN=2;DP=787;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant15-variant18-variant21-variant22-variant27-variant30-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1215,0,951:22,15,26,18
chr1	100472604	.	A	G	713.22	PASS	AC=1;AF=0.5;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,47:107:99:1033,0,1495:36,24,27,20
chr1	100481062	.	AG	A	116.95	PASS	AC=1;AF=0.5;AN=2;DP=166;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:264,0,546:4,16,1,10
chr1	100483009	.	C	A	216.15	PASS	AC=1;AF=0.5;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:292,0,354:9,5,7,3
chr1	100483213	.	A	G	701.42	PASS	AC=1;AF=0.5;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:38,33:71:99:807,0,949:19,19,16,17
chr1	100488177	.	C	T	2649.56	PASS	AC=1;AF=0.563;AN=2;DP=1904;FractionInformativeReads=1;set=variant7-variant13-variant15-variant16-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,151:296:99:3586,0,3498:71,74,67,84
chr1	100503564	.	T	C	453.31	PASS	AC=1;AF=0.5;AN=2;DP=174;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:397,0,735:22,6,10,4
chr1	100503993	.	A	C	779.85	PASS	AC=1;AF=0.5;AN=2;DP=294;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:1078,0,522:7,16,4,28
chr1	100543962	.	A	G	1105.8	PASS	AC=1;AF=0.5;AN=2;DP=444;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,47:102:99:1165,0,1465:35,20,25,22
chr1	100549698	.	TA	T,TAA	261.7	PASS	AC=1,0;AF=0.474,0.026;AN=2;DP=7053;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant29-filterInvariant31-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/1:178:99:67,69,21,21
chr1	100587146	.	T	C	186.35	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:303,0,186:3,5,3,7
chr1	100598866	.	G	A	3559.77	PASS	AC=1;AF=0.919;AN=2;DP=5812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,68:139:99:2547,0,3839:26,45,24,44
chr1	100598867	.	C	T	3559.77	PASS	AC=1;AF=0.919;AN=2;DP=5711;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:2547,0,3839:25,43,22,44
chr1	100614419	.	A	T	188.45	PASS	AC=1;AF=0.567;AN=2;DP=456;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant15-variant21-variant22-variant27-variant30-variant32-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:136,0,621:5,14,2,6
chr1	100617887	.	C	T	758.58	PASS	AC=1;AF=0.955;AN=2;DP=1295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:503,0,404:11,7,13,8
chr1	100638801	.	A	C	382.42	PASS	AC=1;AF=0.5;AN=2;DP=83;MQ=60;set=variant7-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:267,0,396:10,9,7,5
chr1	100643910	.	G	A	1982.22	PASS	AC=1;AF=0.932;AN=2;DP=2542;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,40:63:99:1444,0,837:0,23,3,37
chr1	100671755	.	A	C	1051.01	PASS	AC=1;AF=0.5;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:52,36:88:99:845,0,1265:31,21,21,15
chr1	100672060	.	T	C	3056.75	PASS	AC=1;AF=0.92;AN=2;DP=4885;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,74:149:99:1936,0,1893:38,37,39,35
chr1	100680593	.	C	CT	68.81	PASS	AC=1;AF=0.649;AN=2;DP=618;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:93:93,0,146:1,7,0,6
chr1	100715454	.	G	A	168.68	PASS	AC=1;AF=0.872;AN=2;DP=2467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:839,0,808:11,22,9,24
chr1	100731819	.	C	CA	1087.73	PASS	AC=1;AF=0.907;AN=2;DP=1701;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:677,0,1565:16,8,9,9
chr1	100731820	.	G	A	1096.77	PASS	AC=1;AF=0.907;AN=2;DP=1724;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:677,0,1565:18,8,9,9
chr1	100732450	.	T	C	1160.03	PASS	AC=1;AF=0.907;AN=2;DP=2046;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,35:58:99:993,0,530:11,12,12,23
chr1	100732526	.	C	G	554.22	PASS	AC=1;AF=0.907;AN=2;DP=989;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:478,0,376:6,9,5,12
chr1	100733207	.	G	GT,GTT	1677.46	PASS	AC=1,1;AF=0.761,0.193;AN=2;DP=3656;set=Intersection	GT:DP:GQ:SB	1/2:54:99:5,3,14,32
chr1	100733552	.	T	C	722.08	PASS	AC=1;AF=0.907;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:451,0,495:13,2,12,3
chr1	100742670	.	A	G	645.73	PASS	AC=1;AF=0.907;AN=2;DP=693;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:427,0,497:13,0,12,2
chr1	100750733	.	AGTTTT	A	4442.73	PASS	AC=1;AF=0.907;AN=2;DP=4370;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,68:130:99:2629,0,3272:41,21,46,22
chr1	100757485	.	CTTTTTTTTTT	CTTTTTTTTT,C,CTTTTTTTTTTT,CTTTTTTTTTTTT	110.37	PASS	AC=0,1,0,0;AF=0.304,0.087,0.087,0.022;AN=2;DP=894;set=variant2-variant3-variant4-variant5-variant7-variant9-variant12-filterInvariant13-variant15-variant16-filterInvariant18-filterInvariant20-variant22-filterInvariant25-variant26-variant27-filterInvariant30-filterInvariant31-variant32-variant33-filterInvariant36-filterInvariant37-variant44	GT:DP:GQ:SB	0/2:31:99:3,8,4,16
chr1	100758155	.	T	C	5671.07	PASS	AC=1;AF=0.907;AN=2;DP=6637;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,99:216:99:2353,0,3265:73,44,67,32
chr1	100817529	.	AGTGTGTGTGTGTGT	AGTGTGTGTGTGT,AGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGTGT,AGTGT,AGTGTGTGT,AGTGTGTGTGT	73.55	PASS	AC=2,0,0,0,0,0,0;AF=0.333,0.2,0.05,0.033,0.017,0.017,0.017;AN=2;DP=550;set=variant-variant3-variant4-variant5-filterInvariant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant25-filterInvariant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:13:39:0,0,0,13
chr1	100818178	.	G	C	845.2	PASS	AC=2;AF=0.6;AN=2;DP=2025;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant27-variant28-variant29-variant30-variant33-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,86:87:99:2618,215,0:0,1,40,46
chr1	100818286	.	A	T	4050.45	PASS	AC=2;AF=0.932;AN=2;DP=4270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2944,280,0:0,0,53,41
chr1	100818464	.	T	C	5085.1	PASS	AC=2;AF=0.989;AN=2;DP=7771;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:6947,674,0:0,0,96,129
chr1	100908324	.	A	G	377.99	PASS	AC=2;AF=0.788;AN=2;DP=226;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:169,12,0:0,0,4,0
chr1	100950183	.	TA	T,TAA	517.98	PASS	AC=1,0;AF=0.375,0.125;AN=2;DP=186;MQ=60;set=variant15-variant24-variant34-variant37	GT:DP:GQ:SB	0/1:50:99:12,12,13,13
chr1	100961779	.	ATTT	AT,ATT,A	304.03	PASS	AC=2,0,0;AF=0.886,0.011,0.045;AN=2;DP=944;FS=0;set=Intersection	GT:DP:GQ:SB	1/1:16:48:0,0,2,14
chr1	100963418	.	T	G	269.73	PASS	AC=2;AF=0.976;AN=2;DP=635;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:659,57,0:0,0,15,4
chr1	100963479	.	CAG	C	1208.82	PASS	AC=2;AF=0.6;AN=2;DP=799;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1800,120,0:0,0,31,9
chr1	100984092	.	T	C	4008.71	PASS	AC=2;AF=0.942;AN=2;DP=4552;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,129:130:99:3991,347,0:0,1,43,86
chr1	100984519	.	T	C	14096	PASS	AC=2;AF=0.942;AN=2;DP=16396;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,426:426:99:13394,1274,0:0,0,200,226
chr1	101003659	.	A	G	512.99	PASS	AC=2;AF=0.977;AN=2;DP=565;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:550,48,0:0,0,12,4
chr1	101003762	.	C	A	1359.3	PASS	AC=2;AF=0.682;AN=2;DP=1541;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1650,159,0:0,0,26,27
chr1	101004010	.	C	T	1481.58	PASS	AC=2;AF=1;AN=2;DP=3287;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2401,231,0:0,0,35,42
chr1	101004145	.	A	C	121.22	PASS	AC=1;AF=0.542;AN=2;DP=184;set=variant2-variant7-variant8-variant11-variant13-variant15-variant19-variant27-variant30-variant32-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:335,0,492:4,11,2,9
chr1	101005090	.	G	A	4323.34	PASS	AC=2;AF=0.662;AN=2;DP=5122;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,184:185:99:5760,516,0:1,0,98,86
chr1	101005855	.	T	C	3493.63	PASS	AC=2;AF=0.917;AN=2;DP=4555;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4394,395,0:0,0,84,48
chr1	101006240	.	C	T	2767.93	PASS	AC=1;AF=0.538;AN=2;DP=3020;MQ=60;set=variant6-variant7-variant8-variant12-variant15-variant16-variant19-variant30-variant32-variant33-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:140,132:272:99:3537,0,3817:66,74,62,70
chr1	101006577	.	A	G	16063.2	PASS	AC=1;AF=0.58;AN=2;DP=11294;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:320,295:615:99:7463,0,8338:149,171,135,160
chr1	101007036	.	T	C	2984.85	PASS	AC=1;AF=0.583;AN=2;DP=3661;MQ=60;set=variant-variant4-variant6-variant7-variant11-variant13-variant14-variant15-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,104:235:99:2581,0,3244:66,65,48,56
chr1	101007055	.	C	T	6699.73	PASS	AC=2;AF=0.917;AN=2;DP=8432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:6658,656,0:0,0,105,114
chr1	101007459	.	C	T	1520.94	PASS	AC=1;AF=0.538;AN=2;DP=1747;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant12-variant15-variant16-variant19-variant30-variant32-variant33-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:94,92:186:99:2029,0,2420:49,45,48,44
chr1	101189027	.	C	G	401.11	PASS	AC=2;AF=1;AN=2;DP=612;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:886,72,0:0,0,4,20
chr1	101190173	.	C	T	576.56	PASS	AC=1;AF=0.538;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant12-variant15-variant18-variant22-variant27-variant29-variant32-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:827,0,1113:28,15,22,12
chr1	101199979	.	A	G	190.31	PASS	AC=2;AF=0.977;AN=2;DP=289;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,6,0
chr1	101203827	.	G	A	4164.88	PASS	AC=2;AF=0.932;AN=2;DP=5866;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4859,488,0:0,0,77,86
chr1	101338324	.	T	C	9125.19	PASS	AC=2;AF=0.692;AN=2;DP=12770;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,393:393:99:12605,1178,0:0,0,207,186
chr1	101338482	.	A	G	13209.6	PASS	AC=2;AF=0.684;AN=2;DP=13819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,379:379:99:12243,1135,0:0,0,179,200
chr1	101340134	.	C	T	406.78	PASS	AC=2;AF=0.617;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:400,30,0:0,0,0,10
chr1	101342497	.	T	C	510.99	PASS	AC=1;AF=0.632;AN=2;DP=713;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:429,0,432:1,11,2,11
chr1	101360215	.	C	T	414.34	PASS	AC=1;AF=0.5;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant17-variant27-variant28	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:142,0,324:8,5,5,4
chr1	101360684	.	G	C	1257.14	PASS	AC=1;AF=0.714;AN=2;DP=2437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,47:79:99:1202,0,698:15,17,25,22
chr1	101361178	.	C	T	690.21	PASS	AC=1;AF=0.583;AN=2;DP=789;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant17-variant20-variant27-variant28-variant33-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,52:98:99:1373,0,1029:25,21,30,22
chr1	101372607	.	C	A	320.22	PASS	AC=2;AF=1;AN=2;DP=371;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:357,24,0:0,0,0,8
chr1	101441384	.	GTTTTTT	GTTT,GTT,GT,GTTTT,GTTTTT,G	455.21	PASS	AC=0,2,0,0,0,0;AF=0.237,0.421,0.158,0.053,0.013,0.013;AN=2;DP=443;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:7:3:0,1,2,4
chr1	101444992	.	CAAAAAA	CAAAAA,CAAAA,C,CA,CAAAAAAA	452.53	PASS	AC=1,0,0,0,0;AF=0.238,0.107,0.012,0.167,0.036;AN=2;DP=8564;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:162:99:69,47,34,12
chr1	101476712	.	G	C	314.57	PASS	AC=1;AF=0.5;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant17-variant27-variant28	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:66:66,0,245:5,2,2,2
chr1	101487373	.	AACACACAC	AACACACACACACAC,AACACACACAC,AACACACACACAC,AAC,A,AACAC	212.43	PASS	AC=1,0,1,0,0,0;AF=0.054,0.162,0.284,0.257,0.014,0.014;AN=2;DP=718;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	3/1:16:99:0,0,1,15
chr1	101704233	.	T	TA	164.78	PASS	AC=1;AF=0.9;AN=2;DP=78;FS=0;MQ=60;set=variant2-variant6-variant7-variant12-variant14-variant15-variant24-variant25-variant26-variant27-variant32-variant33-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:39:124,0,39:2,0,4,1
chr1	101706246	.	T	C	1033.98	PASS	AC=1;AF=0.5;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant21-variant26-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,38:84:99:1129,0,1430:23,23,21,17
chr1	102268924	.	T	C	1723.14	PASS	AC=1;AF=0.5;AN=2;DP=759;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant30-variant31-variant35	GT:AD:DP:GQ:PL:SB	0/1:92,67:159:99:1679,0,2490:53,39,40,27
chr1	102271774	.	G	A	4761.87	PASS	AC=1;AF=0.617;AN=2;DP=4830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,82:173:99:1818,0,3567:39,52,34,48
chr1	102271775	.	C	T	2011.68	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:82,91:173:99:2040,0,3128:34,48,39,52
chr1	102296144	.	T	G	395.78	PASS	AC=1;AF=0.531;AN=2;DP=523;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant11-variant14-variant15-variant18-variant19-variant28-variant33-variant34-variant35-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:666,0,558:16,9,17,9
chr1	102296279	.	T	C	1613.81	PASS	AC=1;AF=0.531;AN=2;DP=1565;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant11-variant14-variant15-variant18-variant19-variant28-variant33-variant34-variant35-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,60:112:99:1420,0,1266:25,27,31,29
chr1	102462446	.	GTCAGT	G	3952.57	PASS	AC=1;AF=0.587;AN=2;DP=3916;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,79:200:99:2924,0,5849:51,70,35,44
chr1	103352451	.	A	G	1250.73	PASS	AC=2;AF=0.743;AN=2;DP=4226;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4736,458,0:0,0,72,81
chr1	103354138	.	A	G	1371.61	PASS	AC=2;AF=0.884;AN=2;DP=2337;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2139,219,0:0,0,40,33
chr1	103354428	.	A	G	1759.29	PASS	AC=2;AF=0.845;AN=2;DP=3598;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3382,339,0:0,0,54,59
chr1	103354939	.	CTG	CTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG,CTGTG,CTGTGTGTGTG,C,CTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTG	1303.42	PASS	AC=2,0,0,0,0,0,0;AF=0.646,0.073,0.061,0.024,0.024,0.012,0.012;AN=2;DP=1457;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:31:99:0,0,23,8
chr1	103356168	.	A	C	61.77	PASS	AC=2;AF=0.889;AN=2;DP=262;FS=0;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,13:14:32:532,32,0:1,0,1,12
chr1	103379918	.	G	A	598.41	PASS	AC=2;AF=0.724;AN=2;DP=1565;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1199,131,0:0,0,18,26
chr1	103380379	.	TA	TAA,T,TAAA	131.63	PASS	AC=2,0,0;AF=0.817,0.037,0.012;AN=2;DP=965;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:20:34:0,1,6,13
chr1	103400491	.	G	A	859.25	PASS	AC=2;AF=0.907;AN=2;DP=1070;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1350,90,0:0,0,21,9
chr1	103400492	.	A	T	859.25	PASS	AC=2;AF=0.907;AN=2;DP=1090;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1350,90,0:0,0,21,9
chr1	103428389	.	G	A	885.57	PASS	AC=2;AF=0.932;AN=2;DP=1692;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1597,144,0:0,0,15,33
chr1	103435626	.	G	A	64.18	PASS	AC=2;AF=0.974;AN=2;DP=72;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;ReadPosRankSum=-0.198;set=variant2-variant3-variant6-variant7-variant8-variant13-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant31-variant32-variant33-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:130,12,0:0,0,3,1
chr1	103444679	.	T	G	514.67	PASS	AC=2;AF=0.788;AN=2;DP=2172;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1566,159,0:0,0,28,25
chr1	103449598	.	G	C	520.72	PASS	AC=2;AF=0.932;AN=2;DP=675;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:456,42,0:0,0,10,4
chr1	103455217	.	C	T	626.36	PASS	AC=2;AF=0.886;AN=2;DP=1689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1702,156,0:0,0,16,36
chr1	103461508	.	T	A	908.01	PASS	AC=2;AF=0.92;AN=2;DP=1651;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1217,123,0:0,0,23,18
chr1	103462473	.	A	G	58.54	PASS	AC=2;AF=0.932;AN=2;DP=183;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:399,27,0:0,0,9,0
chr1	103463976	.	G	T	41.49	PASS	AC=2;AF=0.952;AN=2;DP=164;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:274,21,0:0,0,1,6
chr1	103467615	.	C	T	508.82	PASS	AC=2;AF=0.92;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:857,63,0:0,0,1,20
chr1	103468609	.	A	G	1912.5	PASS	AC=2;AF=0.92;AN=2;DP=2534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2217,216,0:0,0,47,25
chr1	103471456	.	CCAT	C	837.72	PASS	AC=2;AF=0.86;AN=2;DP=3705;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:3055,212,0:0,0,30,40
chr1	103471734	.	AAAATAAAT	AAAATAAATAAATAAATAAAT,AAAATAAATAAAT,AAAATAAATAAATAAATAAATAAAT,AAAATAAATAAATAAAT,A	150.96	PASS	AC=2,0,0,0,0;AF=0.6,0.06,0.16,0.08,0.04;AN=2;DP=312;FS=0;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant42-variant43	GT:DP:GQ:SB	1/1:2:3:0,0,0,2
chr1	103483514	.	C	T	354.05	PASS	AC=2;AF=0.775;AN=2;DP=1521;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1426,120,0:0,0,9,31
chr1	103487394	.	CT	C	434.22	PASS	AC=2;AF=0.932;AN=2;DP=1460;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:756,83,0:0,0,3,25
chr1	103496620	.	G	T	4430.2	PASS	AC=2;AF=0.932;AN=2;DP=7047;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5364,522,0:0,0,88,86
chr1	103496805	.	GAA	GA,GAAA,GAAAAA,G	493.06	PASS	AC=2,0,0,0;AF=0.837,0.058,0.012,0.012;AN=2;DP=1618;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:20:24:0,2,4,14
chr1	103548319	.	C	G	571.35	PASS	AC=2;AF=0.75;AN=2;DP=326;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:437,36,0:0,0,10,2
chr1	103573547	.	G	A	1875.83	PASS	AC=2;AF=0.966;AN=2;DP=3369;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2704,242,0:0,0,50,31
chr1	104076462	.	C	T	87.49	PASS	AC=1;AF=0.8;AN=2;DP=1583;MQ=60;set=filterInvariant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:805,0,698:16,11,19,10
chr1	104076495	.	A	G	66.73	PASS	AC=1;AF=0.8;AN=2;DP=1614;MQ=60;set=filterInvariant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:756,0,796:12,17,17,15
chr1	104076537	.	A	T	85.73	PASS	AC=1;AF=0.8;AN=2;DP=1244;MQ=60;set=filterInvariant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:572,0,513:8,14,11,13
chr1	104077271	.	GT	GTT,G	68.17	PASS	AC=0,1;AF=0.109,0.457;AN=2;DP=1042;set=filterInvariant-filterInvariant3-variant4-filterInvariant7-variant12-variant13-variant15-variant17-filterInvariant19-variant20-variant22-variant23-filterInvariant26-variant28-variant30-variant31-filterInvariant32-variant35-variant37-variant40-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:63:99:21,9,21,12
chr1	104080169	.	G	C	269.9	PASS	AC=1;AF=0.8;AN=2;DP=1810;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:689,0,904:19,21,15,14
chr1	104084226	.	A	G	698.02	PASS	AC=1;AF=0.8;AN=2;DP=1442;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:722,0,980:10,24,8,19
chr1	104086145	.	A	G	1442.86	PASS	AC=2;AF=1;AN=2;DP=2833;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2596,258,0:0,0,31,55
chr1	104089773	.	C	G	241.62	PASS	AC=1;AF=0.818;AN=2;DP=476;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:98:261,0,98:1,3,3,6
chr1	104094237	.	T	TAAATTAAAAAACCATACTCCCA	510.16	PASS	AC=1;AF=0.5;AN=2;DP=135;MQ=60;set=variant12-variant13-variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:638,0,5178:15,10,9,4
chr1	104096692	.	T	C	257.84	PASS	AC=1;AF=0.8;AN=2;DP=895;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:178,0,347:3,8,1,5
chr1	104108280	.	CCAGT	C	484.39	PASS	AC=1;AF=0.625;AN=2;DP=139;MQ=60;set=variant12-variant13-variant15-variant23-variant28-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:303,0,661:1,10,3,5
chr1	104116312	.	A	G	812.48	PASS	AC=1;AF=0.607;AN=2;DP=1180;set=variant4-variant12-variant13-variant15-variant17-variant20-variant22-variant23-variant28-variant31-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,44:106:99:1069,0,1607:36,26,24,20
chr1	104166496	.	T	C	801.27	DRAGENHardSNP	AC=1;AF=0.543;AN=2;DP=4857;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:81,37:118:99:658,0,1851:50,31,25,12
chr1	107946262	.	G	A	1083.74	PASS	AC=1;AF=0.588;AN=2;DP=851;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:566,0,304:9,4,15,1
chr1	107946324	.	CA	C,CAA,CAAA	41.34	PASS	AC=1,0,0;AF=0.4,0.138,0.013;AN=2;DP=3092;set=filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:94:99:31,21,29,13
chr1	107951101	.	A	G	5790.35	PASS	AC=2;AF=1;AN=2;DP=5821;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:5099,467,0:0,0,95,61
chr1	107951247	.	A	AT	2502.27	PASS	AC=1;AF=0.556;AN=2;DP=6540;set=variant2-variant3-variant5-variant6-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,126:268:99:2449,0,3252:75,67,56,70
chr1	107951532	.	A	G	7895.03	PASS	AC=2;AF=0.989;AN=2;DP=9001;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:7610,678,0:0,0,127,99
chr1	107952605	.	T	G	1963.92	PASS	AC=2;AF=0.966;AN=2;DP=2518;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2693,253,0:0,0,50,35
chr1	107952914	.	G	A	8488.71	PASS	AC=2;AF=0.989;AN=2;DP=10125;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,282:283:99:9034,837,0:1,0,139,143
chr1	107961159	.	A	G	1043.56	PASS	AC=1;AF=0.536;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant13-variant14-variant15-variant19-variant22-variant24-variant27-variant29-variant30-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,47:71:99:1311,0,627:17,7,32,15
chr1	107961196	.	G	A	1586.2	PASS	AC=1;AF=0.5;AN=2;DP=790;MQ=60;set=variant4-variant9-variant13-variant14-variant15-variant19-variant22-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:39,62:101:99:1655,0,817:21,18,36,26
chr1	107979396	.	A	C	2480.5	PASS	AC=2;AF=1;AN=2;DP=3812;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3431,324,0:0,0,34,74
chr1	108024677	.	CAAAAAAAAAAAAA	C,CA,CAA,CAAA,CAAAAAA,CAAAAAAAA,CAAAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAAA,CAAAAA,CAAAA,CAAAAAAAAAAAAAA	1320.38	PASS	AC=0,0,0,1,0,0,0,0,0,0,0;AF=0.025,0.1,0.063,0.275,0.05,0.013,0.075,0.013,0.013,0.013,0.013;AN=2;DP=2097;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:47:99:8,7,25,7
chr1	108024868	.	C	T	4104.04	PASS	AC=1;AF=0.587;AN=2;DP=3456;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,78:180:99:2116,0,2742:46,56,30,48
chr1	108113702	.	A	G	366.53	PASS	AC=2;AF=0.909;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:886,75,0:0,0,19,6
chr1	108113856	.	G	A	1990.98	PASS	AC=1;AF=0.714;AN=2;DP=3551;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,46:121:99:1710,0,3363:39,36,25,21
chr1	108113865	.	G	A	2033.98	PASS	AC=1;AF=0.714;AN=2;DP=3671;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,50:124:99:1756,0,3336:38,36,25,25
chr1	108115145	.	T	C	12389.6	PASS	AC=2;AF=0.919;AN=2;DP=13703;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,374:374:99:11330,1121,0:0,0,217,157
chr1	108152630	.	G	T	661.75	PASS	AC=1;AF=0.591;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant10-variant15-variant18-variant23-variant29-variant30-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:544,0,538:1,14,7,12
chr1	108292260	.	A	G	2358.08	PASS	AC=1;AF=0.722;AN=2;DP=2427;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,50:100:99:1296,0,1429:15,35,18,32
chr1	108293874	.	A	G	573.02	PASS	AC=1;AF=0.5;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant23-variant26-variant28-variant29-variant31-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,43:68:99:1034,0,539:9,16,16,27
chr1	108293899	.	T	A	434.94	PASS	AC=1;AF=0.5;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant23-variant26-variant28-variant29-variant31-variant36-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:782,0,482:6,13,6,20
chr1	108299775	.	ATGTGTGTGTG	ATGTGTGTG,ATGTGTG,ATG,ATGTGTGTGTGTG,A	1047.28	PASS	AC=1,0,0,0,0;AF=0.6,0.125,0.025,0.013,0.013;AN=2;DP=1734;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:54:99:25,4,18,7
chr1	108299807	.	G	GTA	413.57	PASS	AC=1;AF=0.556;AN=2;DP=549;set=variant13-variant14-variant15-variant19-variant26-variant30-filterInvariant31-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:430,0,1337:28,11,24,2
chr1	108299809	.	G	A	3234.41	PASS	AC=2;AF=0.75;AN=2;DP=555;set=variant4-variant10-variant12-variant13-variant14-variant15-variant2-variant19	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3311,258,0:0,0,63,23
chr1	108307642	.	C	T	495.3	PASS	AC=2;AF=0.863;AN=2;DP=678;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:768,63,0:0,0,17,4
chr1	108307727	.	T	A	1741.59	PASS	AC=2;AF=0.847;AN=2;DP=2390;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2095,198,0:0,0,44,22
chr1	108313258	.	C	T	2058.87	PASS	AC=1;AF=0.85;AN=2;DP=2708;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,52:83:99:1165,0,610:16,15,29,23
chr1	108315256	.	G	C	190.38	PASS	AC=1;AF=0.643;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant24-variant26-variant30-variant31-variant32-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:96:96,0,367:9,1,3,0
chr1	108315305	.	C	T	1780.01	PASS	AC=2;AF=1;AN=2;DP=1875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1715,108,0:1,0,39,11
chr1	108507541	.	GGCCGCC	GGCC,G	437.99	PASS	AC=1,0;AF=0.775,0.038;AN=2;DP=2135;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:39:99:2,15,3,19
chr1	108507636	.	G	A	138.41	PASS	AC=1;AF=0.77;AN=2;DP=560;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:323,0,132:1,4,6,6
chr1	108676624	.	A	C	5597.89	PASS	AC=2;AF=1;AN=2;DP=6698;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,181:182:99:5250,535,0:1,0,105,76
chr1	108703834	.	C	T	2479.11	PASS	AC=1;AF=0.583;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant16-variant20-variant37	GT:AD:DP:GQ:PL:SB	0/1:25,61:86:99:1485,0,575:13,12,31,30
chr1	108724541	.	T	C	1401.72	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=1.396;FractionInformativeReads=1;MQ=60;MQRankSum=0.385;QD=11.12;ReadPosRankSum=-2.967;SOR=0.825;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:63,63:126:99:1430,0,1430:33,30,35,28
chr1	108741228	.	G	A	5299.32	PASS	AC=1;AF=0.538;AN=2;DP=2315;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant13-variant15-variant16-variant18-variant20-variant26-variant30-variant31-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,101:204:99:2648,0,2674:66,37,58,43
chr1	108741774	.	T	A	2552.76	PASS	AC=2;AF=0.563;AN=2;DP=2799;MQ=60;set=variant2-variant4-variant12-variant13-variant15-variant16-variant18-variant20-variant26-variant28-variant30-variant31-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,233:233:99:7295,698,0:0,0,100,133
chr1	108742123	.	C	G	181.56	PASS	AC=2;AF=0.65;AN=2;DP=1015;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:75:1117,75,0:0,0,15,9
chr1	108742130	.	T	C	181.58	PASS	AC=2;AF=0.563;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant12-variant13-variant15-variant16-variant18-variant20-variant26-variant28-variant30-variant31-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1200,81,0:0,0,17,10
chr1	108742952	.	G	T	776.78	PASS	AC=2;AF=0.595;AN=2;DP=1093;MQ=60;set=variant2-variant4-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2003,168,0:0,0,37,19
chr1	108743059	.	G	C	778.36	PASS	AC=2;AF=0.676;AN=2;DP=2841;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3226,306,0:0,0,54,48
chr1	108766133	.	A	G	575.22	PASS	AC=2;AF=0.581;AN=2;DP=581;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,24:25:50:840,50,0:0,1,19,5
chr1	108766424	.	A	G	2920.4	PASS	AC=2;AF=0.641;AN=2;DP=2390;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2871,267,0:0,0,29,60
chr1	108771524	.	C	T	306.55	PASS	AC=1;AF=0.531;AN=2;DP=841;FS=0;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,24:28:48:903,0,48:4,0,24,0
chr1	108771721	.	T	C	2647.26	PASS	AC=1;AF=0.5;AN=2;DP=5759;set=variant2-variant5-filterInvariant6-filterInvariant8-variant15-variant16-filterInvariant17-variant19-variant21-variant22-variant23-variant28-filterInvariant29-variant33-variant34-variant35-variant39-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:213,83:296:99:1272,0,5340:90,123,38,45
chr1	108994925	.	A	G	169.59	DRAGENHardSNP	AC=2;AF=0.84;AN=2;DP=606;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:544,66,0:0,0,11,11
chr1	108994952	.	G	T	70.4	DRAGENHardSNP	AC=2;AF=0.796;AN=2;DP=601;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:390,48,0:0,0,7,9
chr1	109010230	.	G	A	734.92	PASS	AC=1;AF=0.5;AN=2;DP=635;FractionInformativeReads=1;set=variant2-variant15-variant28-variant43	GT:AD:DP:GQ:PL:SB	0/1:168,54:222:99:838,0,4001:91,77,29,25
chr1	109013458	.	C	T	315.69	PASS	AC=2;AF=0.927;AN=2;DP=323;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:234,18,0:0,0,1,5
chr1	109170746	.	C	T	588.81	PASS	AC=2;AF=0.841;AN=2;DP=2148;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2619,219,0:0,0,58,15
chr1	109181309	.	C	CAT	16504.8	PASS	AC=2;AF=1;AN=2;DP=13849;FS=0;MQ=60;MQRankSum=2.088;ReadPosRankSum=1.156;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,365:365:99:16346,1107,0:0,0,187,178
chr1	109202283	.	C	A	300.6	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant18	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:329,0,681:17,5,10,2
chr1	109240063	.	A	G	3779.31	PASS	AC=1;AF=0.5;AN=2;DP=461;FractionInformativeReads=1;MQ=60;set=variant15-variant18	GT:AD:DP:GQ:PL:SB	0/1:116,139:255:99:3808,0,3283:34,82,47,92
chr1	109240160	.	CTTTTTTTTTTTT	C	1539.87	PASS	AC=2;AF=0.989;AN=2;DP=1437;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1553,109,0:0,0,1,34
chr1	109241669	.	G	A	518.67	PASS	AC=1;AF=0.605;AN=2;DP=214;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:144,0,307:8,0,4,0
chr1	109255513	.	G	T	3254.12	PASS	AC=2;AF=0.932;AN=2;DP=3958;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2812,286,0:0,0,49,47
chr1	109260357	.	G	A	1441.06	PASS	AC=1;AF=0.784;AN=2;DP=2967;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1367,0,1484:38,29,35,23
chr1	109260477	.	G	C	2461.75	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=1.163;FractionInformativeReads=1;MQ=60;MQRankSum=1.153;QD=13.68;ReadPosRankSum=2.218;SOR=0.598;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:78,102:180:99:2490,0,1920:37,41,51,51
chr1	109261509	.	A	G	2279.73	PASS	AC=1;AF=0.5;AN=2;DP=849;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant15-variant18-variant26	GT:AD:DP:GQ:PL:SB	0/1:81,80:161:99:2021,0,1924:43,38,44,36
chr1	109265029	.	G	T	1129.25	PASS	AC=1;AF=0.764;AN=2;DP=3589;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,56:113:99:1342,0,1479:28,29,27,29
chr1	109265326	.	G	C	127.38	PASS	AC=1;AF=0.784;AN=2;DP=807;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:693,0,471:4,13,6,18
chr1	109268573	.	T	C	3889.99	PASS	AC=2;AF=0.821;AN=2;DP=5010;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4412,410,0:0,0,65,72
chr1	109270402	.	G	A	2417.25	PASS	AC=1;AF=0.689;AN=2;DP=2601;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1073,0,843:23,9,28,15
chr1	109270563	.	T	C	2963.59	PASS	AC=1;AF=0.5;AN=2;DP=215;FS=1.666;FractionInformativeReads=1;MQ=60;MQRankSum=-0.202;QD=13.78;ReadPosRankSum=3.302;SOR=0.67;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:96,119:215:99:2992,0,2339:46,50,61,58
chr1	109273456	.	A	G	3296.02	PASS	AC=2;AF=0.707;AN=2;DP=4093;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4574,418,0:0,0,52,88
chr1	109273610	.	G	A	637.41	PASS	AC=2;AF=0.695;AN=2;DP=916;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:906,87,0:0,0,9,20
chr1	109284633	.	T	C	497.83	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=2.814;FractionInformativeReads=1;MQ=60;MQRankSum=1.11;QD=12.76;ReadPosRankSum=1.503;SOR=1.262;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:526,0,458:10,9,13,7
chr1	109289236	.	C	A	693.35	PASS	AC=1;AF=0.818;AN=2;DP=1625;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:432,0,666:17,4,15,4
chr1	109289353	.	C	G	3730.71	PASS	AC=1;AF=0.818;AN=2;DP=6147;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,77:161:99:1825,0,2129:48,36,44,33
chr1	109289487	.	C	T	3506.18	PASS	AC=1;AF=0.818;AN=2;DP=5136;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:82,57:139:99:1386,0,2161:42,40,22,35
chr1	109299453	.	C	G	902.1	PASS	AC=1;AF=0.826;AN=2;DP=1254;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:427,0,402:7,8,7,11
chr1	109301019	.	GC	G	150.1	PASS	AC=2;AF=0.864;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant15-variant19-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:187,15,0:0,0,4,1
chr1	109301250	.	G	C	1527.8	PASS	AC=1;AF=0.818;AN=2;DP=3048;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,49:76:99:1195,0,562:11,16,21,28
chr1	109321824	.	G	T	2029.55	PASS	AC=1;AF=0.818;AN=2;DP=2133;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:810,0,839:23,5,23,3
chr1	109337572	.	A	C	866.68	PASS	AC=1;AF=0.5;AN=2;DP=1069;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant32-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,36:94:99:852,0,1481:33,25,16,20
chr1	109338861	.	G	C	1915.94	PASS	AC=1;AF=0.658;AN=2;DP=3089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,37:81:99:887,0,1064:25,19,20,17
chr1	109339414	.	GT	G,GTT	184.36	PASS	AC=1,0;AF=0.471,0.059;AN=2;DP=265;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant36-variant37-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:14:65:1,3,2,8
chr1	109342716	.	A	G	552.32	PASS	AC=1;AF=0.5;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant32-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:786,0,318:10,7,18,11
chr1	109350198	.	GT	G,GTT	216.77	PASS	AC=0,1;AF=0.382,0.118;AN=2;DP=2387;MQ=60;set=variant-variant2-filterInvariant3-filterInvariant4-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant20-variant21-variant23-variant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-variant31-filterInvariant32-filterInvariant34-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:39:99:1,26,3,9
chr1	109351501	.	A	G	1200.28	PASS	AC=1;AF=0.5;AN=2;DP=1536;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant32-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,53:109:99:1516,0,1434:31,25,23,30
chr1	109358755	.	A	AT	8409.33	PASS	AC=1;AF=0.645;AN=2;DP=9190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,149:320:99:3595,0,4251:89,82,77,72
chr1	109363075	.	T	C	742.54	PASS	AC=1;AF=0.5;AN=2;DP=1032;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant32-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,53:106:99:1409,0,1222:30,23,34,19
chr1	109363140	.	T	C	986.52	PASS	AC=1;AF=0.5;AN=2;DP=1427;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant32-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,66:121:99:1608,0,1251:26,29,31,35
chr1	109363232	.	T	C	819.7	PASS	AC=1;AF=0.5;AN=2;DP=928;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant32-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,33:69:99:891,0,888:12,24,8,25
chr1	109366370	.	C	T	2462.52	PASS	AC=1;AF=0.744;AN=2;DP=3898;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,79:147:99:1986,0,1606:28,40,29,50
chr1	109369797	.	T	G	240.81	PASS	AC=1;AF=0.657;AN=2;DP=995;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:412,0,569:14,4,10,6
chr1	109369915	.	G	T	986.6	PASS	AC=1;AF=0.643;AN=2;DP=2167;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,40:96:99:968,0,1329:26,30,22,18
chr1	109372876	.	G	A	205.04	PASS	AC=1;AF=0.803;AN=2;DP=637;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:257,0,214:5,3,7,1
chr1	109372968	.	T	G	591.42	PASS	AC=1;AF=0.795;AN=2;DP=1844;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:808,0,652:16,9,20,9
chr1	109377157	.	TA	T,TAA	1312.12	PASS	AC=2,0;AF=0.907,0.07;AN=2;DP=1988;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:42:99:1,0,25,16
chr1	109391486	.	G	A	2670.67	PASS	AC=2;AF=1;AN=2;DP=2802;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2756,261,0:0,0,50,37
chr1	109394978	.	G	A	1108.67	PASS	AC=1;AF=0.542;AN=2;DP=1038;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant13-variant15-variant16-variant22-variant27-variant33-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:66,51:117:99:1261,0,1676:39,27,30,21
chr1	109395105	.	C	T	1533.14	PASS	AC=2;AF=0.857;AN=2;DP=5950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5673,543,0:0,0,95,87
chr1	109457151	.	C	T	275.3	PASS	AC=2;AF=1;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant23	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:304,21,0:0,0,0,7
chr1	109472024	.	G	C	180.64	PASS	AC=1;AF=0.5;AN=2;DP=34;MQ=60;set=variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:209,0,317:8,0,6,1
chr1	109472773	.	G	A	2110.52	PASS	AC=2;AF=0.6;AN=2;DP=1495;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant34-variant35-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2053,189,0:0,0,31,32
chr1	109472813	.	T	C	1540.18	PASS	AC=2;AF=0.594;AN=2;DP=1106;MQ=60;set=variant3-variant5-variant6-variant7-variant11-variant13-variant15-variant20-variant22-variant23-variant24-variant25-variant27-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2435,216,0:0,0,37,35
chr1	109474250	.	TA	TAAA,TAA,TAAAA,T	1116.05	PASS	AC=0,0,0,1;AF=0.218,0.141,0.013,0.218;AN=2;DP=7731;set=variant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-variant10-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-filterInvariant24-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-filterInvariant42-variant44	GT:DP:GQ:SB	0/4:239:99:116,84,25,14
chr1	109486196	.	A	G	1414.81	PASS	AC=2;AF=0.676;AN=2;DP=6804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4855,486,0:0,0,89,74
chr1	109486240	.	TA	T	1587.68	PASS	AC=2;AF=0.636;AN=2;DP=5696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:6003,527,0:0,0,80,95
chr1	109490457	.	T	C	631.53	PASS	AC=2;AF=0.676;AN=2;DP=2015;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1577,156,0:0,0,20,32
chr1	109493134	.	G	GTTA	127.38	PASS	AC=2;AF=0.667;AN=2;DP=86;FS=0;set=variant2-variant6-variant7-variant15-variant21-variant23-variant24-variant35-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:83,6,0:0,0,0,2
chr1	109524584	.	C	A	408.8	PASS	AC=2;AF=0.531;AN=2;DP=388;FractionInformativeReads=1;set=variant3-variant5-variant6-variant7-variant11-variant15-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant33-variant35-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1074,96,0:0,0,8,24
chr1	109529322	.	T	TAA	1562.01	PASS	AC=2;AF=0.989;AN=2;DP=1314;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1586,111,0:0,0,8,29
chr1	109534940	.	G	A	1338.7	PASS	AC=2;AF=0.989;AN=2;DP=1645;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1050,102,0:0,0,22,12
chr1	109538262	.	CGAG	C	1791.72	PASS	AC=1;AF=0.5;AN=2;DP=197;MQ=60;set=variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:76,49:125:99:1829,0,3503:45,31,24,25
chr1	109545046	.	C	T	492.87	PASS	AC=2;AF=0.989;AN=2;DP=675;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.424;ReadPosRankSum=-0.193;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:545,48,0:0,0,4,12
chr1	109618257	.	C	T	1462.45	PASS	AC=2;AF=0.989;AN=2;DP=1828;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1795,187,0:0,0,40,23
chr1	109618308	.	G	A	2126.95	PASS	AC=2;AF=0.71;AN=2;DP=2113;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3258,284,0:0,0,62,33
chr1	109633256	.	C	G	3188.4	PASS	AC=2;AF=0.661;AN=2;DP=4495;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5508,500,0:0,0,111,56
chr1	109635398	.	A	G	574.6	PASS	AC=2;AF=0.611;AN=2;DP=878;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1426,111,0:0,0,30,7
chr1	109637229	.	C	G	1047.64	PASS	AC=1;AF=0.538;AN=2;DP=735;MQ=60;set=variant3-variant6-variant9-variant10-variant15-variant18-variant24-variant29-variant32-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:788,0,788:19,12,18,14
chr1	109637882	.	A	T	2666.21	PASS	AC=1;AF=0.556;AN=2;DP=1413;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant10-variant15-variant18-variant24-variant29-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:114,112:226:99:2737,0,2779:48,66,46,66
chr1	109639190	.	G	T	3027.87	PASS	AC=1;AF=0.538;AN=2;DP=2321;MQ=60;set=variant3-variant6-variant9-variant10-variant15-variant18-variant24-variant29-variant32-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,109:218:99:2905,0,2981:59,50,53,56
chr1	109648794	.	A	G	551.46	PASS	AC=1;AF=0.55;AN=2;DP=454;MQ=60;set=variant3-variant9-variant10-variant15-variant18-variant24-variant29-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:702,0,830:12,21,13,16
chr1	109648870	.	C	G	114.2	PASS	AC=2;AF=0.563;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant14-variant15-variant18-variant25-variant27-variant29-variant32-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:705,51,0:0,0,2,15
chr1	109649764	.	C	G	1301.24	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:33,48:81:99:1329,0,775:10,23,14,34
chr1	109650386	.	T	C	188.88	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant14-variant15-variant17-variant25-variant27-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:320,0,172:5,2,9,1
chr1	109650484	.	GA	G,GAA	146.43	PASS	AC=0,1;AF=0.261,0.239;AN=2;DP=998;MQ=60;set=variant-filterInvariant4-variant5-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-variant12-variant14-variant15-variant17-filterInvariant18-filterInvariant20-variant24-variant25-variant27-variant33-variant34-variant35-variant40-variant43-variant44	GT:DP:GQ:SB	0/2:53:99:16,10,18,9
chr1	109656034	.	G	GAA	201.86	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=2.993;FractionInformativeReads=0.885;MQ=59.03;MQRankSum=-0.535;QD=7.76;ReadPosRankSum=2.488;SOR=1.845;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:239,0,653:12,2,9,0
chr1	109656038	.	A	G	210.89	PASS	AC=1;AF=0.625;AN=2;DP=69;set=variant15-variant27-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:239,0,653:14,3,9,0
chr1	109656043	.	AG	A	304.66	PASS	AC=1;AF=0.5;AN=2;DP=121;set=variant3-variant15-variant24-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:699,0,488:13,0,15,3
chr1	109656045	.	AGAGAGAGAGAGAGAGAG	A	280.58	PASS	AC=1;AF=0.5;AN=2;DP=162;set=variant3-variant15-variant24-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:672,0,831:16,4,16,3
chr1	109656073	.	A	AGGGAGT	944.54	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;set=variant11-variant15-variant17-variant25-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:1053,0,879:19,5,23,6
chr1	109656420	.	T	C	4627.67	PASS	AC=2;AF=0.672;AN=2;DP=4729;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant29-variant32-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4753,471,0:0,0,75,82
chr1	109656946	.	T	C	2620.85	PASS	AC=2;AF=0.672;AN=2;DP=3881;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant29-variant32-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4963,473,0:0,0,74,84
chr1	109656981	.	T	C	1812.24	PASS	AC=1;AF=0.571;AN=2;DP=1689;MQ=60;set=variant5-variant6-variant11-variant13-variant14-variant15-variant17-variant25-variant27-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,68:133:99:1724,0,1754:30,35,33,35
chr1	109704390	.	C	G	2226.07	PASS	AC=2;AF=0.989;AN=2;DP=3139;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3254,262,0:0,0,75,12
chr1	109704618	.	A	G	5408.79	PASS	AC=2;AF=1;AN=2;DP=7181;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5230,486,0:0,0,54,108
chr1	109714750	.	T	C	254.34	PASS	AC=1;AF=0.639;AN=2;DP=1217;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:533,0,515:4,13,8,13
chr1	109714919	.	A	G	73.25	PASS	AC=1;AF=0.643;AN=2;DP=399;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:208,0,201:6,2,5,2
chr1	109727475	.	T	C	323.3	PASS	AC=2;AF=0.953;AN=2;DP=567;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:595,51,0:0,0,12,5
chr1	109727653	.	CT	C	626.92	PASS	AC=1;AF=0.563;AN=2;DP=988;MQ=60;set=variant7-variant11-variant12-variant14-variant15-variant17-variant19-variant22-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1504,0,1572:29,25,25,26
chr1	109727832	.	A	G	294.12	PASS	AC=2;AF=0.575;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant24-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:761,57,0:0,0,3,16
chr1	109732387	.	G	C	230.85	PASS	AC=1;AF=0.531;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant12-variant14-variant15-variant17-variant19-variant22-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:500,0,533:5,13,9,12
chr1	109734541	.	C	T	1434.12	PASS	AC=1;AF=0.814;AN=2;DP=2416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:655,0,782:12,19,7,18
chr1	109740306	.	T	TGAGAGA,TGA,TGAGA	293.51	PASS	AC=0,1,0;AF=0.071,0.357,0.071;AN=2;DP=160;set=variant5-variant10-variant15-variant24-variant33-variant38-variant39	GT:DP:GQ:SB	0/2:26:99:3,10,1,12
chr1	109740312	.	T	A	134.83	PASS	AC=1;AF=0.5;AN=2;DP=70;set=variant15-variant24-variant39	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:163,0,701:4,10,1,6
chr1	109741516	.	A	C	542.07	PASS	AC=2;AF=0.898;AN=2;DP=677;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:835,66,0:0,0,4,18
chr1	109741530	.	T	C	94.17	PASS	AC=2;AF=0.591;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant15-variant17-variant19-variant24-variant28-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:612,48,0:0,0,3,13
chr1	109745618	.	T	C	2059.21	PASS	AC=2;AF=0.898;AN=2;DP=2583;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2179,180,0:0,0,23,37
chr1	109771063	.	T	C	4837.82	PASS	AC=2;AF=0.738;AN=2;DP=5683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4474,449,0:0,0,57,93
chr1	109771881	.	G	T	755.12	PASS	AC=2;AF=1;AN=2;DP=715;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:440,33,0:0,0,10,1
chr1	109773705	.	ATT	A	44.82	PASS	AC=2;AF=0.929;AN=2;DP=38;FS=0;MQ=60;MQRankSum=-0.55;ReadPosRankSum=0.937;set=variant7-variant8-variant12-variant15-variant23-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:107,9,0:0,0,0,3
chr1	109778577	.	T	C	3158.67	PASS	AC=2;AF=0.738;AN=2;DP=3725;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2536,254,0:0,0,49,36
chr1	109779556	.	T	A	3082.84	PASS	AC=2;AF=1;AN=2;DP=4031;FS=0;MQ=60;MQRankSum=-0.258;ReadPosRankSum=-0.258;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2386,239,0:0,0,35,45
chr1	109779621	.	T	TC	2449.43	PASS	AC=2;AF=0.779;AN=2;DP=2442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1794,144,0:0,0,15,33
chr1	109792735	.	A	ACGC	901.58	PASS	AC=2;AF=0.738;AN=2;DP=4781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:6446,450,0:0,0,85,55
chr1	109794252	.	T	C	2720.95	PASS	AC=2;AF=0.955;AN=2;DP=9677;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,237:237:99:7624,710,0:0,0,101,136
chr1	109795026	.	T	C	3965.83	PASS	AC=2;AF=0.955;AN=2;DP=6691;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,177:178:99:5857,488,0:1,0,94,83
chr1	109795608	.	T	C	5077.79	PASS	AC=2;AF=0.966;AN=2;DP=8514;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6490,623,0:0,0,95,113
chr1	109804646	.	G	A	130.23	PASS	AC=1;AF=0.625;AN=2;DP=624;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:252,0,403:3,11,0,7
chr1	109806442	.	C	A	2052.83	PASS	AC=2;AF=0.676;AN=2;DP=2611;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2867,242,0:0,0,13,68
chr1	109806834	.	C	T	3060.93	PASS	AC=1;AF=0.625;AN=2;DP=8327;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,187:328:99:4338,0,3296:76,65,98,89
chr1	109807099	.	G	A	1068.95	PASS	AC=1;AF=0.625;AN=2;DP=4159;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,81:157:99:2182,0,2105:39,37,37,44
chr1	109813020	.	G	A	205.43	PASS	AC=1;AF=0.706;AN=2;DP=1426;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:565,0,803:19,11,11,11
chr1	109813236	.	TTCCCAGTCTTGGGG	T	905.95	PASS	AC=1;AF=0.697;AN=2;DP=3725;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,44:130:99:1561,0,12981:41,45,22,22
chr1	109813510	.	A	T	284.84	PASS	AC=1;AF=0.5;AN=2;DP=663;MQ=60;set=variant-variant4-variant5-variant15-variant17-variant19-variant25-variant31-variant34-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,47:74:99:1252,0,707:20,7,28,19
chr1	109813719	.	C	T	2141.21	PASS	AC=1;AF=0.5;AN=2;DP=2125;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant17-variant19-variant25-variant31-variant34-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:126,108:234:99:2688,0,3026:57,69,51,57
chr1	109816176	.	A	C	5403.31	PASS	AC=2;AF=1;AN=2;DP=8342;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,211:213:99:6556,617,0:2,0,79,132
chr1	109817245	.	C	T	3238.47	PASS	AC=2;AF=0.763;AN=2;DP=4905;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,172:173:99:5165,470,0:0,1,85,87
chr1	109817838	.	T	C	616.36	PASS	AC=2;AF=0.845;AN=2;DP=1360;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1900,164,0:0,0,32,23
chr1	109818158	.	C	CT	5905	PASS	AC=2;AF=0.845;AN=2;DP=5974;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:6830,521,0:0,0,97,76
chr1	109818263	.	G	A	3778.69	PASS	AC=2;AF=1;AN=2;DP=4873;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4628,458,0:0,0,57,96
chr1	109818306	.	G	T	2623.24	PASS	AC=2;AF=0.833;AN=2;DP=3009;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2913,242,0:0,0,17,64
chr1	109822143	.	G	A	1926.43	PASS	AC=2;AF=0.81;AN=2;DP=1494;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1676,153,0:0,0,37,14
chr1	109822166	.	G	A	2741.34	PASS	AC=2;AF=0.81;AN=2;DP=2639;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2484,246,0:0,0,52,30
chr1	109825360	.	C	T	942.79	PASS	AC=2;AF=1;AN=2;DP=1851;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1236,105,0:0,0,14,21
chr1	109825591	.	C	T	1546.82	PASS	AC=1;AF=0.587;AN=2;DP=3384;MQ=60;set=variant2-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,79:155:99:2128,0,1976:42,34,45,34
chr1	109836835	.	A	G	1426.86	PASS	AC=1;AF=0.609;AN=2;DP=3969;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:123,93:216:99:2226,0,4787:55,68,42,51
chr1	109836842	.	C	G	5697.38	PASS	AC=1;AF=0.722;AN=2;DP=5934;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,115:202:99:2948,0,3322:41,46,52,63
chr1	109838116	.	C	T	273.85	PASS	AC=2;AF=1;AN=2;DP=603;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:809,69,0:0,0,5,18
chr1	109838833	.	T	C	660.75	PASS	AC=2;AF=1;AN=2;DP=1224;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:875,78,0:0,0,19,7
chr1	109838918	.	C	T	2531.13	PASS	AC=2;AF=0.943;AN=2;DP=4861;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3749,377,0:0,0,75,51
chr1	109839063	.	AT	A,ATT	332.92	PASS	AC=1,0;AF=0.386,0.136;AN=2;DP=1044;set=variant2-variant4-variant5-filterInvariant7-variant10-variant11-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant19-variant23-variant25-variant26-variant27-variant29-variant30-filterInvariant35-variant36-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:35:99:4,17,5,9
chr1	109839392	.	A	G	975.91	PASS	AC=2;AF=0.864;AN=2;DP=2844;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2280,225,0:0,0,44,31
chr1	109839433	.	A	G	1151.54	PASS	AC=2;AF=1;AN=2;DP=4179;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3273,334,0:0,0,61,51
chr1	109839738	.	C	A	1781.64	PASS	AC=1;AF=0.5;AN=2;DP=1330;MQ=60;set=variant15-variant18-variant21-variant34-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,78:175:99:1810,0,2453:51,46,39,39
chr1	109839896	.	C	T	486.45	PASS	AC=1;AF=0.5;AN=2;DP=816;MQ=60;set=variant2-variant5-variant6-variant13-variant15-variant18-variant21-variant23-variant34-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,38:84:99:934,0,1274:14,32,12,26
chr1	109839954	.	G	C	247.98	PASS	AC=2;AF=0.907;AN=2;DP=1063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1380,117,0:0,0,12,27
chr1	109855135	.	TAA	TA,T,TAAA,TAAAA	2159.05	PASS	AC=1,0,1,0;AF=0.636,0.045,0.125,0.011;AN=2;DP=4447;set=Intersection	GT:DP:GQ:SB	1/3:111:99:8,10,44,49
chr1	109855404	.	G	A	9147.68	PASS	AC=1;AF=0.821;AN=2;DP=11589;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:178,171:349:99:4213,0,4177:89,89,87,84
chr1	109856306	.	G	A	3944.01	PASS	AC=1;AF=0.697;AN=2;DP=3783;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,76:145:99:1775,0,1723:41,28,42,34
chr1	109856384	.	CAA	C	6252.42	PASS	AC=1;AF=0.821;AN=2;DP=5974;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,94:189:99:3424,0,3399:48,47,41,53
chr1	109883576	.	C	CAT	2347.54	PASS	AC=1;AF=0.821;AN=2;DP=3391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,49:106:99:1896,0,2425:16,41,20,29
chr1	109884775	.	T	G	2120.88	PASS	AC=1;AF=0.793;AN=2;DP=2531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:802,0,973:16,22,13,19
chr1	109897103	.	A	G	3472.46	PASS	AC=1;AF=0.814;AN=2;DP=6288;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,96:179:99:2319,0,2006:49,34,53,43
chr1	109898263	.	A	ACC,C	461.51	PASS	AC=1,0;AF=0.703,0.095;AN=2;DP=705;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant2-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:17:99:2,10,0,5
chr1	109898267	.	GC	GCC,G,GCCC	569.21	PASS	AC=1,1,0;AF=0.534,0.155,0.052;AN=2;DP=443;set=variant-variant2-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant3-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/1:12:99:0,0,1,11
chr1	109940503	.	G	C	1385.8	PASS	AC=1;AF=0.538;AN=2;DP=766;MQ=60;set=variant9-variant13-variant15-variant16-variant18-variant21-variant27-variant32-variant34-variant35-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,27:68:99:627,0,905:20,21,11,16
chr1	109943893	.	C	T	5712.37	PASS	AC=1;AF=0.793;AN=2;DP=5329;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,80:165:99:2252,0,2414:24,61,19,61
chr1	109944078	.	T	C	4468.35	PASS	AC=1;AF=0.821;AN=2;DP=4038;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,59:112:99:1775,0,1501:37,16,43,16
chr1	109955010	.	C	A	306.83	PASS	AC=1;AF=0.868;AN=2;DP=363;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:222,0,374:0,10,0,6
chr1	109958035	.	T	C	994.84	PASS	AC=1;AF=0.821;AN=2;DP=1648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:715,0,716:8,19,8,18
chr1	110009171	.	C	T	148.54	PASS	AC=1;AF=0.833;AN=2;DP=537;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:172,0,232:5,2,5,2
chr1	110009434	.	A	C	1710.74	PASS	AC=1;AF=0.817;AN=2;DP=3173;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,37:80:99:1048,0,1407:27,16,24,13
chr1	110009654	.	AC	A	3479.38	PASS	AC=1;AF=0.788;AN=2;DP=6355;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,72:157:99:1819,0,2232:36,49,32,40
chr1	110018148	.	C	T	640.43	PASS	AC=2;AF=0.966;AN=2;DP=1921;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1096,93,0:0,0,22,9
chr1	110022896	.	A	C	475.05	PASS	AC=1;AF=0.567;AN=2;DP=648;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant21-variant27-variant32-variant34-variant35-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:654,0,682:14,11,13,8
chr1	110023144	.	T	G	1034.31	PASS	AC=1;AF=0.5;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:1063,0,816:15,18,19,21
chr1	110023432	.	G	A	741.96	PASS	AC=1;AF=0.567;AN=2;DP=914;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant21-variant27-variant32-variant34-variant35-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:833,0,750:9,15,14,16
chr1	110023610	.	G	A	1652.32	PASS	AC=1;AF=0.619;AN=2;DP=1244;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant21-variant23-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:911,0,1058:23,19,18,20
chr1	110030895	.	GTC	G	950.37	PASS	AC=1;AF=0.556;AN=2;DP=1021;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant27-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,34:80:99:1224,0,1792:29,17,24,10
chr1	110030945	.	A	G	2546.63	PASS	AC=1;AF=0.591;AN=2;DP=1957;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,45:112:99:1005,0,1675:39,28,23,22
chr1	110035159	.	T	C	789.89	PASS	AC=1;AF=0.553;AN=2;DP=1437;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant27-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:964,0,1065:22,25,20,21
chr1	110035318	.	AT	A	902.55	PASS	AC=1;AF=0.636;AN=2;DP=841;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,22:33:99:550,0,219:6,5,13,9
chr1	110036919	.	C	G	7346.15	PASS	AC=1;AF=0.583;AN=2;DP=1511;MQ=60;set=variant9-variant15-variant21-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,117:261:99:3179,0,3760:57,87,48,69
chr1	110036998	.	G	C	3658.81	PASS	AC=1;AF=0.533;AN=2;DP=1470;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant32-variant34-variant35-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,49:106:99:1327,0,1608:21,36,19,30
chr1	110037838	.	T	G	955.73	PASS	AC=1;AF=0.595;AN=2;DP=2107;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,52:112:99:1356,0,1408:23,37,24,28
chr1	110040310	.	A	G	676.86	PASS	AC=1;AF=0.579;AN=2;DP=1199;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,35:80:99:845,0,1209:21,24,17,18
chr1	110040452	.	TATGGGG	T	818.78	PASS	AC=1;AF=0.579;AN=2;DP=1295;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:1524,0,6625:27,31,20,21
chr1	110040460	.	C	CA	818.93	PASS	AC=1;AF=0.579;AN=2;DP=1263;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:1527,0,6578:26,31,20,21
chr1	110040680	.	C	T	659.84	PASS	AC=1;AF=0.679;AN=2;DP=1680;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:961,0,944:13,23,18,20
chr1	110041037	.	CAG	C	841.73	PASS	AC=1;AF=0.714;AN=2;DP=1990;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,43:74:99:1649,0,1112:17,14,21,22
chr1	110041477	.	TAAAA	TAA,TAAAAA,TAAA,T	450.41	PASS	AC=0,0,1,0;AF=0.318,0.045,0.288,0.015;AN=2;DP=1010;set=variant-filterInvariant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant27-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:30:99:8,3,6,13
chr1	110042079	.	A	G	242.08	PASS	AC=1;AF=0.595;AN=2;DP=478;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:531,0,437:3,14,6,13
chr1	110047110	.	C	G	82.72	PASS	AC=1;AF=0.6;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant15-variant16-variant18-variant19-variant21-variant29-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:309,0,142:3,3,7,3
chr1	110047333	.	G	A	1276.24	PASS	AC=1;AF=0.563;AN=2;DP=329;MQ=60;set=variant9-variant15-variant21-variant29-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:632,0,647:14,13,14,15
chr1	110048436	.	C	A	676.37	PASS	AC=1;AF=0.583;AN=2;DP=760;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant29-variant32-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:585,0,392:9,9,10,13
chr1	110048527	.	G	A	739.95	PASS	AC=1;AF=0.583;AN=2;DP=855;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant29-variant32-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:487,0,492:9,11,11,8
chr1	110052139	.	A	G	938.53	PASS	AC=1;AF=0.688;AN=2;DP=1945;MQ=60;set=variant4-variant5-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,31:80:99:688,0,1150:20,29,15,16
chr1	110091447	.	G	A	1205.97	PASS	AC=1;AF=0.5;AN=2;DP=772;MQ=60;set=variant3-variant14-variant15-variant26-variant31-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1032,0,1114:22,24,14,26
chr1	110136458	.	A	G	17752.6	PASS	AC=1;AF=0.681;AN=2;DP=18413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:327,320:647:99:8140,0,8039:163,164,155,165
chr1	110145758	.	ACCTGGGGGGTCTTCTAACTACTGG	A	758.76	PASS	AC=1;AF=0.611;AN=2;DP=1486;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:903,0,2046:24,9,22,2
chr1	110148974	.	C	T	1288.4	PASS	AC=1;AF=0.614;AN=2;DP=3205;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,56:121:99:1340,0,1657:36,29,30,26
chr1	110163076	.	A	G	256.95	PASS	AC=1;AF=0.671;AN=2;DP=1224;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:593,0,557:7,14,10,10
chr1	110168888	.	C	G	1221.66	PASS	AC=1;AF=0.756;AN=2;DP=5322;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:1992,0,2091:46,39,42,36
chr1	110169957	.	A	G	2112.79	PASS	AC=1;AF=0.768;AN=2;DP=10170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,173:317:99:4434,0,3475:71,73,83,90
chr1	110170896	.	T	C	897.79	PASS	AC=1;AF=0.756;AN=2;DP=4189;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,66:148:99:1777,0,2029:43,39,34,32
chr1	110171705	.	A	C	719.77	PASS	AC=1;AF=0.756;AN=2;DP=3311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:1030,0,761:20,13,22,13
chr1	110172346	.	T	TG	462.29	PASS	AC=1;AF=0.768;AN=2;DP=2044;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,50:71:99:1370,0,455:12,9,28,22
chr1	110172362	.	C	T	445.98	PASS	AC=1;AF=0.629;AN=2;DP=1634;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,53:78:99:1397,0,650:14,11,29,24
chr1	110198727	.	C	G	738.74	PASS	AC=1;AF=0.609;AN=2;DP=2933;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,68:118:99:1712,0,1241:34,16,40,28
chr1	110199172	.	CTGTGTGTGTGTG	CTGTGTGTGTGTGTGTG,CTGTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTG,CTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTG,C,CTGTGTGTGTGTGTGTGTGTGTGTG,CTG	426.42	PASS	AC=0,1,0,0,0,0,0,0,0,0,0,0,0;AF=0.125,0.138,0.075,0.038,0.013,0.125,0.05,0.075,0.025,0.013,0.025,0.013,0.013;AN=2;DP=3084;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:33:99:8,6,9,10
chr1	110199225	.	TG	T,GG,TGG	537.15	PASS	AC=1,0,0;AF=0.477,0.091,0.045;AN=2;DP=657;set=variant3-variant8-variant10-variant11-variant13-variant15-variant18-variant19-variant22-variant23-variant5-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant43	GT:DP:GQ:SB	0/1:28:99:14,5,7,2
chr1	110200360	.	T	C	1953.53	PASS	AC=1;AF=0.571;AN=2;DP=6439;set=variant-variant5-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant27-variant30-variant34-variant35-variant36-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:181,173:354:99:4364,0,4603:90,91,80,93
chr1	110201580	.	C	T	5961.37	PASS	AC=2;AF=0.966;AN=2;DP=10086;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,298:298:99:8992,892,0:0,0,132,166
chr1	110201699	.	T	C	2763.56	PASS	AC=2;AF=0.893;AN=2;DP=3320;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3501,312,0:0,0,41,63
chr1	110201809	.	G	T	4909.9	PASS	AC=2;AF=0.919;AN=2;DP=3892;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:5188,358,0:0,0,60,49
chr1	110201812	.	A	G	4980.87	PASS	AC=2;AF=0.919;AN=2;DP=4015;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:5188,358,0:0,0,64,55
chr1	110208089	.	A	T	128.87	PASS	AC=1;AF=0.571;AN=2;DP=273;set=variant5-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant34-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:195,0,130:2,4,3,4
chr1	110210780	.	C	G	2730.11	PASS	AC=2;AF=0.898;AN=2;DP=7796;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:6407,607,0:0,0,74,129
chr1	110210818	.	C	T	148.61	PASS	AC=1;AF=0.645;AN=2;DP=2492;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:565,0,1197:20,28,16,20
chr1	110211835	.	T	C	1190.53	PASS	AC=1;AF=0.672;AN=2;DP=2255;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:1386,0,1832:49,8,39,2
chr1	110224329	.	C	G	90.48	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:27:290,0,27:2,0,9,2
chr1	110231592	.	T	C	2234.3	PASS	AC=2;AF=0.962;AN=2;DP=705;MQ=60;set=variant3-variant5-variant8-variant12-variant14-variant15-variant26-variant28-variant29-variant30-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2339,186,0:0,0,43,19
chr1	110231777	.	G	A	6927.79	PASS	AC=2;AF=0.955;AN=2;DP=2609;MQRankSum=1.519;ReadPosRankSum=1.235;set=variant3-variant8-variant12-variant14-variant15-variant26-variant28-variant29-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:7575,748,0:0,0,118,132
chr1	110233138	.	G	C	2560.14	PASS	AC=2;AF=0.962;AN=2;DP=679;FractionInformativeReads=1;set=variant3-variant5-variant8-variant12-variant14-variant15-variant26-variant28-variant29-variant30-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1904,124,0:1,0,15,39
chr1	110252010	.	T	C	2780.01	PASS	AC=2;AF=0.818;AN=2;DP=4014;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3334,341,0:0,0,61,53
chr1	110256075	.	A	G	2201.88	PASS	AC=1;AF=0.531;AN=2;DP=2558;set=variant3-variant4-variant7-variant10-variant11-variant15-variant16-variant22-variant26-variant32-variant33-variant34-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,83:178:99:2131,0,2737:61,34,50,33
chr1	110256507	.	G	A	756.29	PASS	AC=1;AF=0.5;AN=2;DP=279;MQ=60;set=variant7-variant15-variant22-variant33	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1209,0,1114:11,31,13,28
chr1	110282652	.	C	A	867.75	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=12.532;FractionInformativeReads=1;MQ=60;MQRankSum=-1.372;QD=14.96;ReadPosRankSum=0.811;SOR=0.108;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:896,0,923:6,21,15,16
chr1	110300504	.	A	G	2808.06	PASS	AC=2;AF=0.977;AN=2;DP=4432;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3716,350,0:0,0,62,55
chr1	110301766	.	AGTGTGTGTGT	AGT,AGTGTGT,AGTGTGTGTGTGT,AGTGTGTGT,AGTGT,A	464.39	PASS	AC=0,0,0,1,0,0;AF=0.216,0.239,0.034,0.33,0.114,0.011;AN=2;DP=1690;set=Intersection	GT:DP:GQ:SB	0/4:44:99:19,4,19,2
chr1	110302450	.	C	T	1081.02	PASS	AC=1;AF=0.5;AN=2;DP=452;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant26-variant31-variant35	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:755,0,819:15,17,19,18
chr1	110304537	.	G	A	428.74	PASS	AC=1;AF=0.56;AN=2;DP=813;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:392,0,405:2,10,3,11
chr1	110466338	.	C	A	10561.2	PASS	AC=2;AF=0.736;AN=2;DP=16683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,540:543:99:15554,1591,0:1,2,260,280
chr1	110466709	.	T	C	4700.31	PASS	AC=2;AF=1;AN=2;DP=9366;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,238:238:99:7120,714,0:0,0,101,137
chr1	110467745	.	A	G	1909.4	PASS	AC=2;AF=1;AN=2;DP=3241;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2596,246,0:0,0,50,32
chr1	110469319	.	T	C	911.15	PASS	AC=2;AF=1;AN=2;DP=1252;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1177,99,0:0,0,9,24
chr1	110472728	.	A	G	3419.93	PASS	AC=2;AF=1;AN=2;DP=5377;FS=0;MQRankSum=2.111;ReadPosRankSum=1.659;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3817,354,0:0,0,56,62
chr1	110527452	.	G	GC	1977.62	PASS	AC=2;AF=1;AN=2;DP=3304;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3998,300,0:0,0,44,54
chr1	110558276	.	A	AC	2300.26	PASS	AC=2;AF=1;AN=2;DP=2429;FS=0;MQ=60;MQRankSum=1.299;ReadPosRankSum=-1.245;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2470,192,0:0,0,14,50
chr1	110564996	.	CAAAAAAA	CAAAAAA,CAAAAA,C	199.97	PASS	AC=1,0,0;AF=0.467,0.017,0.017;AN=2;DP=3062;set=filterInvariant4-filterInvariant5-filterInvariant7-variant8-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant44	GT:DP:GQ:SB	0/1:108:99:42,36,16,14
chr1	110592048	.	CTT	CT,C	219.47	PASS	AC=1,0;AF=0.382,0.132;AN=2;DP=1161;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:31:99:10,3,10,8
chr1	110693447	.	T	C	609.96	PASS	AC=2;AF=0.841;AN=2;DP=1762;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1381,126,0:0,0,11,31
chr1	110709719	.	T	C	2372.71	PASS	AC=2;AF=0.691;AN=2;DP=2565;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:5146,349,0:0,0,55,61
chr1	110709720	.	G	A	802.17	PASS	AC=2;AF=0.617;AN=2;DP=2267;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:5146,349,0:0,0,54,61
chr1	110714436	.	A	T	75.67	PASS	AC=2;AF=0.611;AN=2;DP=516;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:572,51,0:0,0,12,5
chr1	110716511	.	C	T	814.9	PASS	AC=2;AF=0.617;AN=2;DP=1712;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2904,252,0:0,0,64,20
chr1	110735037	.	T	G	234.41	PASS	AC=2;AF=0.731;AN=2;DP=1023;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1053,81,0:0,0,21,6
chr1	110738296	.	G	A	2385.65	PASS	AC=2;AF=0.679;AN=2;DP=6423;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,254:254:99:7513,757,0:0,0,134,120
chr1	110740273	.	G	T	883.68	PASS	AC=2;AF=0.679;AN=2;DP=2187;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3534,335,0:0,0,54,58
chr1	110740406	.	C	T	422.9	PASS	AC=2;AF=0.679;AN=2;DP=866;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1654,149,0:0,0,12,38
chr1	110740688	.	C	T	736.42	PASS	AC=2;AF=0.679;AN=2;DP=1905;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2775,261,0:0,0,52,36
chr1	110741349	.	G	T	836.62	PASS	AC=2;AF=0.724;AN=2;DP=2252;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2443,224,0:0,0,39,36
chr1	110741583	.	C	G	959.41	PASS	AC=2;AF=0.724;AN=2;DP=3201;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3454,312,0:0,0,51,53
chr1	110742085	.	T	C	598.28	PASS	AC=2;AF=0.737;AN=2;DP=2388;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1692,150,0:0,0,21,29
chr1	110742502	.	A	G	88.36	PASS	AC=2;AF=0.781;AN=2;DP=124;set=variant3-variant4-variant8-variant11-variant15-variant16-variant17-variant21-variant23-variant24-variant26-variant28-variant33-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:230,18,0:0,0,5,1
chr1	110742615	.	A	G	246.94	PASS	AC=2;AF=0.679;AN=2;DP=717;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:799,69,0:0,0,17,6
chr1	110742992	.	T	G	370.51	PASS	AC=2;AF=0.679;AN=2;DP=1340;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1488,132,0:0,0,26,18
chr1	110765535	.	C	G	358.85	PASS	AC=2;AF=0.7;AN=2;DP=1147;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1637,132,0:0,0,36,8
chr1	110776759	.	A	G	181.63	PASS	AC=1;AF=0.676;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant14-variant15-variant16-variant19-variant21-variant24-variant26-variant27-variant28-variant31-variant32-variant36-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:166,0,259:2,7,0,5
chr1	110881083	.	ACT	A	201.24	PASS	AC=1;AF=0.55;AN=2;DP=476;MQ=60;set=variant-variant10-variant15-variant22-variant23-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:633,0,1232:21,11,13,5
chr1	110881432	.	G	C	1162.32	PASS	AC=1;AF=0.672;AN=2;DP=4402;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,102:194:99:2615,0,2295:53,39,52,50
chr1	110882444	.	A	G	3056.91	PASS	AC=2;AF=0.798;AN=2;DP=5430;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5497,533,0:0,0,89,89
chr1	110888948	.	G	A	472.46	PASS	AC=1;AF=0.55;AN=2;DP=556;MQ=60;set=variant-variant10-variant15-variant22-variant23-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,34:73:99:712,0,998:17,22,18,16
chr1	110906247	.	CA	CAA,C	260.72	PASS	AC=1,0;AF=0.25,0.25;AN=2;DP=3855;set=filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:69:99:37,7,23,2
chr1	110917753	.	CT	CTT,C	62.55	PASS	AC=1,0;AF=0.528,0.056;AN=2;DP=230;set=variant6-variant9-variant12-variant14-variant15-variant16-variant18-variant21-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant40	GT:DP:GQ:SB	0/1:13:11:1,1,8,3
chr1	110919703	.	A	C	1019.8	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=2.335;FractionInformativeReads=1;MQ=60;MQRankSum=-1.504;QD=7.97;ReadPosRankSum=-1.356;SOR=0.943;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:80,48:128:99:1048,0,1939:38,42,20,28
chr1	110946294	.	G	A	202.88	PASS	AC=2;AF=0.731;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:460,39,0:0,0,9,4
chr1	110949720	.	C	T	527.24	PASS	AC=2;AF=0.708;AN=2;DP=2084;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2768,258,0:0,0,41,45
chr1	110949810	.	A	C	1102.67	PASS	AC=1;AF=0.5;AN=2;DP=779;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant15-variant16-variant25-variant26-variant28-variant30-variant32-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:1145,0,1027:17,18,24,16
chr1	110949857	.	A	T	872.21	PASS	AC=2;AF=0.708;AN=2;DP=2905;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3291,307,0:0,0,60,43
chr1	110950277	.	G	A	3554.43	PASS	AC=1;AF=0.5;AN=2;DP=2763;MQ=60;set=variant3-variant15-variant25-variant26-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:190,181:371:99:4479,0,4883:95,95,92,89
chr1	110950439	.	C	T	2991.05	PASS	AC=2;AF=0.707;AN=2;DP=6749;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,268:268:99:8234,798,0:0,0,123,145
chr1	110996672	.	G	T	2822.77	PASS	AC=1;AF=0.5;AN=2;DP=215;FS=1.096;FractionInformativeReads=1;MQ=60;MQRankSum=-0.137;QD=13.13;ReadPosRankSum=1.417;SOR=0.613;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:102,113:215:99:2851,0,2674:35,67,41,72
chr1	110998766	.	T	A	346.42	PASS	AC=2;AF=0.625;AN=2;DP=578;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:863,75,0:0,0,17,8
chr1	110998854	.	G	A	1426.26	PASS	AC=2;AF=0.621;AN=2;DP=1883;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2121,208,0:0,0,40,30
chr1	111059812	.	CGA	CGAGA,C	551.28	PASS	AC=1,0;AF=0.5,0.032;AN=2;DP=1635;set=variant-variant2-variant4-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:71:99:28,15,22,6
chr1	111060669	.	T	C	1565.12	PASS	AC=1;AF=0.776;AN=2;DP=6554;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,122:226:99:3187,0,2472:48,56,56,66
chr1	111061062	.	T	C	1258.06	PASS	AC=1;AF=0.776;AN=2;DP=3036;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1002,0,1254:22,24,24,16
chr1	111144526	.	T	G	376.77	PASS	AC=2;AF=1;AN=2;DP=1048;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=-1.735;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:909,75,0:0,0,20,5
chr1	111173886	.	G	A	196.77	PASS	AC=1;AF=0.919;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:274,0,138:4,0,7,1
chr1	111215090	.	T	TGG	4598.1	PASS	AC=2;AF=0.611;AN=2;DP=3967;MQ=60;set=variant3-variant5-variant7-variant10-variant12-variant15-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant38-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,252:253:99:10833,717,0:0,1,157,95
chr1	111390624	.	ATT	A,AT,ATTTT,ATTT	45.42	PASS	AC=0,1,0,0;AF=0.106,0.439,0.015,0.015;AN=2;DP=747;set=variant2-variant3-variant4-variant5-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/2:13:76:3,3,3,4
chr1	111436857	.	T	G	2446.77	PASS	AC=1;AF=0.739;AN=2;DP=5768;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:114,52:166:99:1829,0,5933:61,53,34,18
chr1	111436858	.	C	T	2446.77	PASS	AC=1;AF=0.739;AN=2;DP=5788;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:115,53:168:99:1829,0,5933:61,54,35,18
chr1	111437129	.	A	C	539.19	PASS	AC=1;AF=0.649;AN=2;DP=1684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:581,0,738:11,16,8,16
chr1	111437176	.	G	GA	678.17	PASS	AC=1;AF=0.739;AN=2;DP=1209;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:310,0,514:7,12,4,9
chr1	111437421	.	C	A	1466.73	PASS	AC=1;AF=0.784;AN=2;DP=1941;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:900,0,679:18,8,25,5
chr1	111441829	.	C	T	5138.69	PASS	AC=1;AF=0.739;AN=2;DP=8626;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:118,120:238:99:2957,0,2904:54,64,57,63
chr1	111441858	.	G	A	2869.88	PASS	AC=1;AF=0.5;AN=2;DP=1785;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant15-variant16-variant22-variant29-variant31-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:114,107:221:99:2655,0,2912:60,54,49,58
chr1	111442529	.	A	AAC	5980.9	PASS	AC=1;AF=0.784;AN=2;DP=4820;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,68:138:99:2607,0,2793:21,49,21,47
chr1	111442555	.	G	C	3345.2	PASS	AC=1;AF=0.784;AN=2;DP=2893;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1236,0,1303:13,35,10,34
chr1	111489901	.	A	C	2975.33	PASS	AC=1;AF=0.526;AN=2;DP=6631;MQ=60;set=variant2-variant3-variant5-variant7-variant12-variant15-variant16-variant17-variant18-variant22-variant25-variant26-variant29-variant31-variant32-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:228,190:418:99:4126,0,9418:125,103,98,92
chr1	111489902	.	A	C	4235.34	PASS	AC=1;AF=0.5;AN=2;DP=1387;MQ=60;set=variant15-variant18-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:227,194:421:99:4264,0,9323:123,104,101,93
chr1	111489903	.	A	C	4098.03	PASS	AC=1;AF=0.5;AN=2;DP=1069;MQ=60;set=variant15-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:231,191:422:99:4126,0,9418:125,106,98,93
chr1	111492807	.	G	A	685.84	PASS	AC=1;AF=0.559;AN=2;DP=586;MQ=60;set=variant3-variant6-variant9-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant30-variant32-variant35-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:310,0,741:4,18,1,10
chr1	111660263	.	C	G	1606.52	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=2.541;FractionInformativeReads=0.991;MQ=60;MQRankSum=-0.807;QD=14.88;ReadPosRankSum=-2.084;SOR=0.995;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:54,53:107:99:1635,0,1609:30,24,33,20
chr1	111682118	.	C	T	71.46	PASS	AC=1;AF=0.529;AN=2;DP=339;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant12-variant15-variant21-variant25-variant26-variant31-variant34-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:200,0,147:4,3,5,4
chr1	111726213	.	A	G	251.83	PASS	AC=1;AF=0.716;AN=2;DP=1409;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:715,0,798:11,18,9,17
chr1	111726869	.	G	A	847.86	PASS	AC=1;AF=0.531;AN=2;DP=1094;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant12-variant15-variant21-variant25-variant26-variant31-variant34-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,31:69:99:861,0,1069:18,20,13,18
chr1	111727469	.	CTT	CTTT,CT,C	318.24	PASS	AC=1,0,0;AF=0.132,0.382,0.013;AN=2;DP=7551;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant20-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:160:99:43,62,25,30
chr1	111737183	.	C	T	609.37	PASS	AC=1;AF=0.75;AN=2;DP=1426;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:722,0,618:18,9,21,7
chr1	111741188	.	C	T	1627.06	PASS	AC=1;AF=0.5;AN=2;DP=440;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant28-variant29-variant38	GT:AD:DP:GQ:PL:SB	0/1:46,64:110:99:1655,0,1132:24,22,38,26
chr1	111742714	.	A	C	284.76	PASS	AC=1;AF=0.951;AN=2;DP=435;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:75:117,0,75:2,2,3,1
chr1	111742761	.	T	C	340.68	PASS	AC=1;AF=0.909;AN=2;DP=816;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:273,0,187:5,3,6,3
chr1	111742838	.	G	C	540.13	PASS	AC=1;AF=0.909;AN=2;DP=1870;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:532,0,459:12,6,11,7
chr1	111743540	.	C	T	1052.55	PASS	AC=1;AF=0.5;AN=2;DP=774;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant15-variant20-variant23-variant26-variant31-variant32-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,33:82:99:809,0,1237:21,28,16,17
chr1	111770423	.	T	G	3588.33	PASS	AC=2;AF=0.725;AN=2;DP=4916;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4692,453,0:0,0,68,83
chr1	111772303	.	CAAAAA	C,CAAAA,CAAAAAAAAAAA,CAAAAAA,CAAAAAAAAAAAA,CAA,CAAA	304.32	PASS	AC=0,0,0,0,1,0,0;AF=0.111,0.056,0.167,0.056,0.056,0.056,0.056;AN=2;DP=87;set=variant7-variant8-variant9-variant10-variant13-variant15-variant23-variant27-variant35	GT:DP:GQ:SB	0/5:2:80:1,0,1,0
chr1	111772328	.	G	A	108.19	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=5.17;FractionInformativeReads=1;MQ=57.91;MQRankSum=-2.697;QD=3.61;ReadPosRankSum=2.01;SOR=1.999;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:23,7:30:99:136,0,633:18,5,7,0
chr1	111773307	.	T	C	622.7	PASS	AC=2;AF=0.563;AN=2;DP=370;MQ=60;set=variant-variant15-variant28-variant29-variant30-variant32-variant36-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1839,180,0:0,0,39,21
chr1	111778241	.	C	T	2770.55	PASS	AC=2;AF=0.989;AN=2;DP=3577;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3220,310,0:0,0,55,49
chr1	111778325	.	C	T	3867.82	PASS	AC=2;AF=0.563;AN=2;DP=741;MQ=60;set=variant15-variant26-variant28-variant29-variant30-variant32-variant36-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3896,370,0:0,0,64,60
chr1	111778824	.	T	C	822.72	PASS	AC=2;AF=0.737;AN=2;DP=1046;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1576,144,0:0,0,14,34
chr1	111783996	.	A	G	1045.41	PASS	AC=2;AF=1;AN=2;DP=3606;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3291,345,0:0,0,63,52
chr1	111784148	.	T	G	2812.63	PASS	AC=2;AF=1;AN=2;DP=3694;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2835,284,0:0,0,45,50
chr1	111784816	.	G	A	1148.92	PASS	AC=2;AF=0.6;AN=2;DP=1717;MQ=60;set=variant5-variant11-variant15-variant18-variant21-variant25-variant26-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3326,296,0:0,0,52,47
chr1	111785930	.	T	C	2402.04	PASS	AC=2;AF=0.671;AN=2;DP=3319;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,83:85:99:2519,204,0:1,1,36,47
chr1	111825883	.	T	C	1644.34	PASS	AC=1;AF=0.633;AN=2;DP=2496;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:956,0,1298:29,19,25,15
chr1	111826055	.	A	G	293.71	PASS	AC=1;AF=0.588;AN=2;DP=736;FractionInformativeReads=1;set=variant3-variant10-variant11-variant15-variant16-variant17-variant20-variant21-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:633,0,550:3,15,5,17
chr1	111833270	.	C	T	597.61	PASS	AC=1;AF=0.724;AN=2;DP=527;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:295,0,218:6,0,9,1
chr1	111833441	.	G	A	3642.99	PASS	AC=1;AF=0.717;AN=2;DP=4689;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,85:164:99:1806,0,1770:40,39,41,44
chr1	111833488	.	C	CCT	3386.9	PASS	AC=1;AF=0.717;AN=2;DP=3374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,56:119:99:2121,0,2387:23,40,25,31
chr1	111833517	.	G	A	1810.55	PASS	AC=1;AF=0.717;AN=2;DP=2195;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:982,0,1201:14,31,19,26
chr1	111853174	.	C	T	516.27	PASS	AC=1;AF=0.542;AN=2;DP=680;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant13-variant15-variant16-variant20-variant21-variant29-variant30-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:681,0,930:13,23,12,19
chr1	111854005	.	C	G	428.67	PASS	AC=2;AF=0.989;AN=2;DP=463;FractionInformativeReads=1;MQ=60;MQRankSum=0.597;ReadPosRankSum=-0.278;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:357,24,0:0,0,8,0
chr1	111854061	.	G	A	514.01	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.63;QD=12.54;ReadPosRankSum=0.3;SOR=0.76;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:542,0,531:14,6,15,6
chr1	111854096	.	A	G	1691.87	PASS	AC=2;AF=0.989;AN=2;DP=2289;MQ=60;MQRankSum=1.902;ReadPosRankSum=0.216;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2036,198,0:0,0,44,22
chr1	111854120	.	G	A	1267.66	PASS	AC=1;AF=0.542;AN=2;DP=836;MQ=60;set=variant3-variant7-variant11-variant13-variant15-variant16-variant20-variant21-variant29-variant30-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:792,0,1252:33,14,22,15
chr1	111854207	.	T	C	3636.3	PASS	AC=2;AF=0.838;AN=2;DP=4369;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3697,357,0:0,0,64,55
chr1	111854223	.	C	T	3865.25	PASS	AC=2;AF=0.713;AN=2;DP=4468;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3595,365,0:0,0,62,60
chr1	111854755	.	A	C	293.72	PASS	AC=2;AF=0.989;AN=2;DP=601;FS=0;MQ=60;MQRankSum=-1.01;ReadPosRankSum=1.491;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:299,27,0:0,0,7,2
chr1	111857154	.	T	C	1357.66	PASS	AC=1;AF=0.744;AN=2;DP=3645;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,60:117:99:1529,0,1582:39,18,36,24
chr1	111857276	.	T	C	2174.66	PASS	AC=1;AF=0.556;AN=2;DP=2262;MQ=60;set=variant3-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:91,79:170:99:1869,0,2070:41,50,35,44
chr1	111857951	.	A	G	744.77	PASS	AC=1;AF=0.542;AN=2;DP=463;set=variant3-variant7-variant11-variant13-variant15-variant16-variant20-variant21-variant29-variant30-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:408,0,532:8,8,6,8
chr1	111858200	.	G	A	1591.28	PASS	AC=1;AF=0.542;AN=2;DP=1160;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant13-variant15-variant16-variant20-variant21-variant29-variant30-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:48,67:115:99:1799,0,1340:23,25,42,25
chr1	111858444	.	C	T	1490.99	PASS	AC=1;AF=0.782;AN=2;DP=7252;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,121:241:99:2999,0,3041:57,63,56,65
chr1	111861714	.	T	A	580.92	PASS	AC=1;AF=0.731;AN=2;DP=1925;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,19:61:99:463,0,1086:27,15,14,5
chr1	111861841	.	A	G	993.55	PASS	AC=1;AF=0.744;AN=2;DP=3939;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1214,0,1647:33,35,26,25
chr1	111861974	.	T	C	795.53	PASS	AC=1;AF=0.7;AN=2;DP=3204;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:897,0,982:17,22,18,20
chr1	111862952	.	T	G	1390.45	PASS	AC=1;AF=0.744;AN=2;DP=5676;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,66:175:99:1559,0,2733:60,49,40,26
chr1	111890240	.	C	CT,CTTT,CTT	360.79	PASS	AC=1,0,0;AF=0.406,0.031,0.156;AN=2;DP=571;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant20-variant21-variant26-variant29-variant30-variant33-variant37-variant38-variant44	GT:DP:GQ:SB	0/1:42:99:17,14,8,3
chr1	111893788	.	GTTTTT	GTTT,GTT,G,GTTTT,GTTTTTT,GT	117.88	PASS	AC=0,1,0,0,0,0;AF=0.114,0.171,0.2,0.071,0.014,0.014;AN=2;DP=1243;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-filterInvariant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:33:69:16,6,4,7
chr1	111895487	.	C	T	4918.48	PASS	AC=1;AF=0.69;AN=2;DP=3511;set=variant3-variant4-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,71:130:99:2110,0,1681:29,30,32,39
chr1	111957097	.	C	G	1133.92	PASS	AC=1;AF=0.75;AN=2;DP=1841;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:991,0,760:15,16,23,10
chr1	111957688	.	T	C	1655.65	PASS	AC=1;AF=0.545;AN=2;DP=1658;set=variant4-variant6-variant15-variant22-variant23-variant25-variant26-variant30-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:101,106:207:99:4139,0,5516:47,54,48,58
chr1	111957693	.	A	G	1449.04	PASS	AC=1;AF=0.75;AN=2;DP=4171;set=variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,105:205:99:4092,0,5446:46,54,48,57
chr1	111958885	.	C	A	208.65	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant18-variant23-variant25-variant26-variant30-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:436,0,449:13,3,12,5
chr1	111962209	.	G	A	794.1	PASS	AC=1;AF=0.5;AN=2;DP=861;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant18-variant23-variant25-variant26-variant30-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,54:94:99:1347,0,1028:22,18,28,26
chr1	111962256	.	G	T	793.69	PASS	AC=1;AF=0.5;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant23-variant25-variant26-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:48,67:115:99:1497,0,1017:25,23,35,32
chr1	111964262	.	G	A	1484	PASS	AC=1;AF=0.5;AN=2;DP=931;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant23-variant25-variant26-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:54,78:132:99:1880,0,1171:23,31,39,39
chr1	111968316	.	G	A	213.97	PASS	AC=1;AF=0.667;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:295,0,100:2,3,2,8
chr1	111968327	.	T	C	187.23	PASS	AC=1;AF=0.692;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:291,0,100:2,3,2,8
chr1	111969294	.	A	G	2351.11	PASS	AC=1;AF=0.685;AN=2;DP=4524;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,95:198:99:2455,0,2688:49,54,46,49
chr1	111969307	.	G	C	2056.84	PASS	AC=1;AF=0.6;AN=2;DP=3256;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,97:202:99:2411,0,2689:48,57,45,52
chr1	111969719	.	A	G	2643.83	PASS	AC=1;AF=0.685;AN=2;DP=5455;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,107:235:99:2427,0,3103:62,66,54,53
chr1	111970431	.	TACACACACACACACACACAC	TACACACACACACACACACACAC,TACACACACACACACACAC,TACACACACACACACAC,TACACACACACACACACACACACACACACAC,TACACACACACAC,TACACACACACACAC,TACACACACACACACACACACACACACAC,TACACACACAC,TACACACACACACACACACACACACACACACACAC,TACACACACACACACACACACACAC,TACACACACACACACACACACACACACACACAC,TACACACACACACACACACACACACAC,T,TACACACAC	100.39	PASS	AC=1,0,0,0,0,0,1,0,0,0,0,0,0,0;AF=0.132,0.118,0.103,0.059,0.015,0.029,0.044,0.015,0.029,0.074,0.015,0.015,0.044,0.015;AN=2;DP=2081;set=variant-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:DP:GQ:SB	1/7:27:82:2,1,6,18
chr1	111985229	.	G	T	1496.34	PASS	AC=1;AF=0.685;AN=2;DP=2803;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,64:114:99:1686,0,1283:32,18,38,26
chr1	111991768	.	G	A	4200.53	PASS	AC=1;AF=0.5;AN=2;DP=1825;MQ=60;set=variant4-variant6-variant15-variant23-variant25-variant26-variant30-variant38	GT:AD:DP:GQ:PL:SB	0/1:116,136:252:99:3161,0,2733:61,55,71,65
chr1	111991845	.	C	A	3165.86	PASS	AC=1;AF=0.667;AN=2;DP=6060;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,144:265:99:3465,0,2934:63,58,67,77
chr1	111992019	.	T	A	1385.44	PASS	AC=1;AF=0.5;AN=2;DP=1944;MQ=60;set=variant4-variant6-variant9-variant15-variant18-variant22-variant23-variant25-variant26-variant30-variant32-variant34-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:101,80:181:99:1936,0,2548:48,53,38,42
chr1	111992095	.	C	T	2268.78	PASS	AC=1;AF=0.635;AN=2;DP=3839;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,90:194:99:2204,0,2594:47,57,40,50
chr1	112004122	.	C	G	4902.88	PASS	AC=1;AF=0.6;AN=2;DP=5588;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,158:334:99:3899,0,4696:61,115,61,97
chr1	112004523	.	GA	G,GAA	77.98	PASS	AC=1,0;AF=0.371,0.129;AN=2;DP=1256;set=filterInvariant-variant2-variant5-filterInvariant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant15-variant16-variant17-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:50:99:29,8,13,0
chr1	112005451	.	C	A	703.32	PASS	AC=1;AF=0.6;AN=2;DP=982;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:655,0,756:8,20,11,17
chr1	112020238	.	A	C	238.57	PASS	AC=2;AF=0.977;AN=2;DP=612;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:377,27,0:0,0,1,8
chr1	112020453	.	C	G	1092.58	PASS	AC=2;AF=0.591;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant21-variant23-variant25-variant26-variant30-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3066,300,0:0,0,48,52
chr1	112021029	.	A	G	422.15	PASS	AC=2;AF=0.625;AN=2;DP=948;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1418,132,0:0,0,16,28
chr1	112026152	.	C	T	967.42	PASS	AC=1;AF=0.593;AN=2;DP=2321;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,72:129:99:1865,0,1428:28,29,36,36
chr1	112028340	.	T	C	362.77	PASS	AC=1;AF=0.5;AN=2;DP=3078;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant30-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:78,26:104:99:158,0,1642:17,61,25,1
chr1	112028486	.	C	A	1881.17	PASS	AC=1;AF=0.5;AN=2;DP=482;MQ=60;set=variant15-variant19-variant22	GT:AD:DP:GQ:PL:SB	0/1:76,74:150:99:1909,0,1849:33,43,32,42
chr1	112029128	.	C	T	325.88	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant22	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:354,0,497:11,7,10,1
chr1	112029189	.	C	T	849.78	PASS	AC=2;AF=0.571;AN=2;DP=541;MQ=60;set=variant8-variant14-variant15-variant18-variant19-variant22-variant25	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:3232,226,0:0,0,40,34
chr1	112029193	.	A	G	794.17	PASS	AC=2;AF=0.821;AN=2;DP=2898;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3416,244,0:0,0,45,35
chr1	112029325	.	A	G	1414.5	PASS	AC=2;AF=0.821;AN=2;DP=4505;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3524,365,0:0,0,54,68
chr1	112029414	.	C	G	564.44	PASS	AC=2;AF=0.571;AN=2;DP=293;MQ=60;set=variant8-variant14-variant15-variant18-variant19-variant22-variant25	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1341,111,0:0,0,10,27
chr1	112032347	.	G	A	369.77	PASS	AC=2;AF=0.713;AN=2;DP=2946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2474,225,0:0,0,29,46
chr1	112033456	.	G	GA	683.01	PASS	AC=2;AF=0.713;AN=2;DP=2711;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2685,240,0:0,0,27,52
chr1	112033515	.	T	C	491.2	PASS	AC=2;AF=0.7;AN=2;DP=1241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1467,99,0:0,0,5,28
chr1	112033519	.	A	G	491.2	PASS	AC=2;AF=0.7;AN=2;DP=1149;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:96:1432,96,0:0,0,5,26
chr1	112042131	.	T	C	411.89	PASS	AC=2;AF=0.821;AN=2;DP=2154;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1868,180,0:0,0,37,23
chr1	112042195	.	T	C	537.16	PASS	AC=2;AF=0.821;AN=2;DP=2812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2548,257,0:0,0,41,45
chr1	112042236	.	G	A	482.74	PASS	AC=2;AF=0.821;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2230,206,0:0,0,28,41
chr1	112042383	.	G	A	457.95	PASS	AC=2;AF=0.821;AN=2;DP=1633;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1579,147,0:0,0,25,24
chr1	112042632	.	A	G	1593.61	PASS	AC=2;AF=0.821;AN=2;DP=6084;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5056,485,0:0,0,77,85
chr1	112042732	.	A	T	1803.56	PASS	AC=1;AF=0.5;AN=2;DP=520;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:61,68:129:99:1751,0,1608:31,30,32,36
chr1	112043139	.	G	A	415.51	PASS	AC=1;AF=0.5;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:48,25:73:99:580,0,1265:20,28,8,17
chr1	112106342	.	C	T	1524.77	PASS	AC=1;AF=0.653;AN=2;DP=2374;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:1035,0,920:24,10,26,12
chr1	112106444	.	G	A	2653.75	PASS	AC=1;AF=0.907;AN=2;DP=5624;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,69:138:99:1653,0,1697:38,31,36,33
chr1	112237915	.	A	T	420.52	PASS	AC=1;AF=0.734;AN=2;DP=372;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:358,0,248:6,1,9,1
chr1	112240038	.	CTT	CTTT,C,CT	381.84	PASS	AC=1,0,0;AF=0.167,0.091,0.242;AN=2;DP=3646;MQ=60;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:104:99:31,37,17,19
chr1	112251983	.	C	G	2432.25	PASS	AC=1;AF=0.719;AN=2;DP=2411;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,37:93:99:817,0,1469:20,36,15,22
chr1	112257193	.	T	C	6550.89	PASS	AC=1;AF=0.719;AN=2;DP=7034;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,116:247:99:2973,0,3545:58,73,50,66
chr1	112257784	.	C	T	140.31	PASS	AC=1;AF=0.733;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:300,0,300:3,6,2,6
chr1	112258252	.	A	G	7006.46	PASS	AC=1;AF=0.706;AN=2;DP=9078;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,156:317:99:3921,0,4057:67,94,70,86
chr1	112266055	.	G	GC	398.78	PASS	AC=2;AF=0.93;AN=2;DP=1730;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1692,138,0:0,0,21,24
chr1	112266300	.	A	G	1141.9	PASS	AC=1;AF=0.764;AN=2;DP=2122;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,28:76:99:678,0,1297:22,26,15,13
chr1	112266366	.	T	C	1082.59	PASS	AC=1;AF=0.764;AN=2;DP=1903;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:772,0,920:20,16,11,19
chr1	112266805	.	A	C	650.89	PASS	AC=1;AF=0.5;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:757,0,948:19,20,17,15
chr1	112267187	.	GCACACACA	GCACACACACA,GCACACA,GCACA,G	405.53	PASS	AC=0,0,0,1;AF=0.045,0.364,0.136,0.045;AN=2;DP=839;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant30-filterInvariant31-variant32-variant34-variant35-variant37-variant38-variant39-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:23:99:6,7,5,5
chr1	112267354	.	C	T	1092.85	PASS	AC=1;AF=0.743;AN=2;DP=1376;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:350,0,584:11,13,7,10
chr1	112267988	.	T	C	675.27	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:617,0,556:13,13,10,13
chr1	112268047	.	G	C,GC	1716.56	PASS	AC=1,0;AF=0.833,0.048;AN=2;DP=2402;MQ=60;set=variant3-variant5-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant4-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:49:99:12,13,13,11
chr1	112268284	.	G	A	2117.6	PASS	AC=1;AF=0.736;AN=2;DP=2660;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,50:106:99:1367,0,1493:19,37,21,29
chr1	112268351	.	GTTTTT	GTTTTTT,G	246.9	PASS	AC=1,0;AF=0.286,0.286;AN=2;DP=298;MQ=60;set=variant8-variant15-variant16-variant18-variant19-variant31-variant43	GT:DP:GQ:SB	0/1:45:99:8,17,5,15
chr1	112268413	.	G	C	165.16	PASS	AC=1;AF=0.5;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:122,0,418:2,11,1,4
chr1	112268425	.	C	G	256.97	PASS	AC=2;AF=0.951;AN=2;DP=379;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:721,54,0:0,0,3,15
chr1	112268666	.	T	C	260.51	PASS	AC=2;AF=0.94;AN=2;DP=702;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:423,39,0:0,0,9,4
chr1	112268693	.	G	A	237.09	PASS	AC=1;AF=0.5;AN=2;DP=103;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:203,0,418:11,3,6,4
chr1	112269872	.	G	A	1208.62	PASS	AC=2;AF=0.93;AN=2;DP=6615;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5611,560,0:0,0,106,81
chr1	112298582	.	A	G	2687.6	PASS	AC=1;AF=0.528;AN=2;DP=2733;MQ=60;set=variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant23-variant30-variant31-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,113:180:99:2861,0,1340:29,38,49,64
chr1	112298829	.	T	C	67.47	PASS	AC=1;AF=0.596;AN=2;DP=564;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:418,0,443:5,11,5,10
chr1	112302219	.	G	A	1159.46	PASS	AC=1;AF=0.591;AN=2;DP=1362;FractionInformativeReads=1;MQ=60;set=variant-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant31-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:60,70:130:99:1891,0,1605:18,42,23,47
chr1	112304126	.	G	T	3581.75	PASS	AC=2;AF=1;AN=2;DP=3586;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3355,297,0:0,0,32,67
chr1	112305406	.	TA	T	406.51	PASS	AC=1;AF=0.5;AN=2;DP=5558;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,40:136:99:461,0,1769:44,52,19,21
chr1	112308953	.	T	C	1492.65	PASS	AC=1;AF=0.596;AN=2;DP=2587;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,50:120:99:1225,0,1854:32,38,25,25
chr1	112308972	.	G	A	1438.6	PASS	AC=1;AF=0.596;AN=2;DP=2685;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,50:123:99:1189,0,2042:34,39,25,25
chr1	112313430	.	GT	G	2960.16	PASS	AC=1;AF=0.596;AN=2;DP=8114;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,143:336:99:2926,0,4029:96,97,71,72
chr1	112315450	.	A	C	3835.19	PASS	AC=1;AF=0.596;AN=2;DP=5496;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,104:260:99:2488,0,4116:60,96,46,58
chr1	112316030	.	CT	CTT,C	2124.21	PASS	AC=1,0;AF=0.567,0.033;AN=2;DP=4021;set=variant-variant8-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant31-variant35-variant37-variant39-variant40-variant42	GT:DP:GQ:SB	0/1:219:99:28,84,29,78
chr1	112316047	.	C	CT,CTT	1770.97	PASS	AC=1,1;AF=0.674,0.07;AN=2;DP=8133;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:113:99:1,13,18,81
chr1	112317086	.	G	A	549.62	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.561;QD=18.32;ReadPosRankSum=0.187;SOR=0.914;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:578,0,320:8,6,10,6
chr1	112317135	.	T	C	200.88	PASS	AC=1;AF=0.591;AN=2;DP=342;MQ=60;set=variant-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant31-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:457,0,443:11,6,11,6
chr1	112317196	.	G	C	270.54	PASS	AC=1;AF=0.577;AN=2;DP=428;FractionInformativeReads=1;MQ=60;set=variant-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant31-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:659,0,556:12,9,13,12
chr1	112317512	.	C	A	818.86	PASS	AC=1;AF=0.596;AN=2;DP=2083;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,54:91:99:1302,0,965:25,12,31,23
chr1	112318484	.	A	G	234.66	PASS	AC=1;AF=0.645;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:348,0,464:8,6,7,4
chr1	112320846	.	T	G	111.22	PASS	AC=1;AF=0.6;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,87:2,1,2,1
chr1	112321032	.	T	A	1421.8	PASS	AC=1;AF=0.533;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant23-variant30-variant31-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,24:75:99:507,0,1449:34,17,15,9
chr1	112531507	.	C	A	1032.88	PASS	AC=1;AF=0.553;AN=2;DP=1385;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant22-variant24-variant27-variant28-variant30-variant31-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,47:80:99:1127,0,742:17,16,24,23
chr1	112938917	.	C	T	541.71	PASS	AC=1;AF=0.583;AN=2;DP=570;MQ=60;set=variant-variant3-variant5-variant6-variant13-variant15-variant21-variant22-variant24-variant25-variant28-variant32-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:419,0,534:11,9,4,11
chr1	112954766	.	G	C	3396.6	PASS	AC=1;AF=0.805;AN=2;DP=4388;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,55:128:99:1375,0,1826:44,29,34,21
chr1	112954964	.	G	A	2074.52	PASS	AC=1;AF=0.805;AN=2;DP=3231;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,57:105:99:1597,0,1288:15,33,16,41
chr1	112954994	.	A	G	1009.99	PASS	AC=2;AF=0.92;AN=2;DP=2140;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2619,201,0:0,0,10,57
chr1	112991698	.	T	C	2594.14	PASS	AC=1;AF=0.805;AN=2;DP=3277;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1461,0,1287:28,32,30,28
chr1	112991862	.	G	T	810.14	PASS	AC=1;AF=0.5;AN=2;DP=760;MQ=60;set=variant-variant3-variant5-variant13-variant15-variant24-variant32-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:911,0,1042:15,24,17,23
chr1	112999227	.	G	A	809.01	PASS	AC=2;AF=0.92;AN=2;DP=5547;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:5015,467,0:0,0,86,70
chr1	113000565	.	A	G	2295.69	PASS	AC=1;AF=0.5;AN=2;DP=1373;MQ=60;set=variant-variant3-variant5-variant13-variant15-variant24-variant32-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,57:145:99:1472,0,2411:36,52,22,35
chr1	113000946	.	GGTCA	G	4509.33	PASS	AC=2;AF=0.909;AN=2;DP=8715;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:9540,643,0:0,0,106,108
chr1	113002127	.	TA	T	8573.62	PASS	AC=1;AF=0.793;AN=2;DP=10379;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:147,147:294:99:4336,0,4340:81,66,81,66
chr1	113002480	.	G	A	3517.6	PASS	AC=1;AF=0.5;AN=2;DP=2903;MQ=60;set=variant-variant3-variant5-variant13-variant15-variant24-variant32-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:156,187:343:99:5002,0,4325:90,66,99,88
chr1	113051730	.	C	G	5458.37	PASS	AC=1;AF=0.595;AN=2;DP=2638;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,67:140:99:1717,0,1719:39,34,30,37
chr1	113052155	.	C	G	2265.32	PASS	AC=1;AF=0.595;AN=2;DP=1154;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,21:56:99:599,0,876:14,21,7,14
chr1	113052186	.	G	C	1988.53	PASS	AC=1;AF=0.595;AN=2;DP=893;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,17:44:99:447,0,721:10,17,6,11
chr1	113059220	.	T	A	226.96	PASS	AC=1;AF=0.786;AN=2;DP=228;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:305,0,104:0,3,0,8
chr1	113063125	.	A	G	1598.49	PASS	AC=1;AF=0.655;AN=2;DP=3899;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,94:163:99:2457,0,1591:30,39,39,55
chr1	113063933	.	CTTTT	CT,CTTTTT,CTTT,CTT,CTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT,C	1535.24	PASS	AC=1,0,0,0,0,0,0,0;AF=0.269,0.013,0.218,0.064,0.013,0.013,0.013,0.026;AN=2;DP=5982;set=variant-filterInvariant2-variant5-variant6-filterInvariant7-variant8-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:143:99:32,39,16,56
chr1	113064468	.	G	A	2205.12	PASS	AC=1;AF=0.579;AN=2;DP=2962;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant30-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,97:192:99:2312,0,2508:60,35,58,39
chr1	113067792	.	A	G	483.85	PASS	AC=1;AF=0.575;AN=2;DP=1064;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:711,0,832:13,16,11,18
chr1	113083439	.	C	T	910.48	PASS	AC=1;AF=0.641;AN=2;DP=2119;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,27:84:99:512,0,1461:35,22,17,10
chr1	113098534	.	C	T	2075.27	PASS	AC=1;AF=0.579;AN=2;DP=2291;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant30-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,90:152:99:2247,0,1403:30,32,45,45
chr1	113113167	.	GTATATATATATATA	G	396.96	PASS	AC=1;AF=0.972;AN=2;DP=171;FS=0;MQ=60;MQRankSum=0.898;ReadPosRankSum=1.271;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:10:322,0,10:1,1,8,0
chr1	113159464	.	T	A	670.38	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0.929;FractionInformativeReads=1;MQ=60;MQRankSum=-0.521;QD=10.01;ReadPosRankSum=0.182;SOR=0.892;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:699,0,726:18,17,18,14
chr1	113196197	.	A	T	146.9	PASS	AC=1;AF=0.7;AN=2;DP=233;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant26-variant28-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:169,0,312:10,2,7,1
chr1	113202417	.	G	A	1003.72	PASS	AC=1;AF=0.671;AN=2;DP=2600;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:827,0,860:22,12,21,11
chr1	113212984	.	CTTTTTTTT	CTTTTTTTTTTTT,CTTTTTTTTTT,C,CTTTTTTTTTTT,CTTTTTTT,CTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT	1051.6	PASS	AC=0,0,0,1,0,0,0,0,0,0;AF=0.039,0.197,0.013,0.118,0.105,0.066,0.026,0.013,0.013,0.013;AN=2;DP=8834;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/4:199:99:26,94,30,49
chr1	113234456	.	G	A	1771.32	PASS	AC=1;AF=0.671;AN=2;DP=6295;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,107:209:99:2385,0,2488:44,58,49,58
chr1	113239478	.	T	C	661.87	PASS	AC=2;AF=0.768;AN=2;DP=3491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2689,255,0:0,0,37,48
chr1	113242488	.	C	T	1449.51	PASS	AC=2;AF=0.725;AN=2;DP=6827;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:6161,573,0:0,0,93,99
chr1	113244433	.	T	C	288.36	PASS	AC=2;AF=0.884;AN=2;DP=1599;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:987,96,0:0,0,13,19
chr1	113246229	.	T	A	611.05	PASS	AC=2;AF=0.686;AN=2;DP=1721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2133,168,0:0,0,56,1
chr1	113248365	.	A	G	1217.7	PASS	AC=2;AF=0.716;AN=2;DP=3506;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3401,288,0:0,0,39,57
chr1	113252614	.	C	A	929.41	PASS	AC=1;AF=0.652;AN=2;DP=2630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:972,0,989:22,17,23,14
chr1	113254125	.	G	A	1199	PASS	AC=1;AF=0.542;AN=2;DP=1075;MQ=60;set=variant8-variant11-variant15-variant16-variant20-variant21-variant27-variant28-variant29-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:54,45:99:99:1252,0,1362:28,26,22,23
chr1	113254267	.	G	C	818.78	PASS	AC=1;AF=0.869;AN=2;DP=1178;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,28:42:99:721,0,426:3,11,10,18
chr1	113254484	.	A	G	230.3	PASS	AC=2;AF=1;AN=2;DP=615;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:604,60,0:0,0,13,7
chr1	113255389	.	C	T	215.28	PASS	AC=2;AF=0.989;AN=2;DP=872;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:724,57,0:0,0,15,4
chr1	113255686	.	TTGTGTG	TTGTGTGTG,TTGTGTGTGTG,TTGTG,T,TTG,TTGTGTGTGTGTG	80.4	PASS	AC=1,0,0,0,0,0;AF=0.485,0.015,0.044,0.015,0.015,0.015;AN=2;DP=565;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:10:99:1,4,1,4
chr1	113454424	.	T	C	735.91	PASS	AC=1;AF=0.625;AN=2;DP=781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant15-variant17-variant18-variant20-variant23-variant24-variant29-variant31-variant32-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:629,0,760:21,4,18,5
chr1	113454571	.	A	G	2571.54	PASS	AC=1;AF=0.63;AN=2;DP=5059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant15-variant17-variant18-variant20-variant23-variant24-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:145,139:284:99:3312,0,3547:73,72,74,65
chr1	113455099	.	G	A	4658.17	PASS	AC=2;AF=0.684;AN=2;DP=10481;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,349:349:99:10636,1043,0:0,0,167,182
chr1	113456546	.	A	T	2615.55	PASS	AC=2;AF=0.684;AN=2;DP=5626;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:6057,554,0:0,0,82,103
chr1	113459676	.	G	A	678.82	PASS	AC=1;AF=0.5;AN=2;DP=80;FractionInformativeReads=1;MQ=60;set=variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:707,0,534:17,5,16,10
chr1	113460683	.	T	G	193.11	PASS	AC=1;AF=0.5;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant12-variant15-variant16-variant21-variant27-variant28-variant31-variant33-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:138,0,109:0,3,1,4
chr1	113471629	.	C	CT	216.78	PASS	AC=1;AF=0.563;AN=2;DP=1320;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant15-filterInvariant16-variant17-variant18-variant20-variant23-variant24-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:614,0,638:22,11,20,14
chr1	113498283	.	A	C	1339.42	PASS	AC=1;AF=0.619;AN=2;DP=1732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant15-variant17-variant18-variant20-variant23-variant24-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:2511,0,3231:24,36,30,35
chr1	113498284	.	G	A	1339.42	PASS	AC=1;AF=0.619;AN=2;DP=1717;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant15-variant17-variant18-variant20-variant23-variant24-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,64:126:99:2511,0,3231:25,37,29,35
chr1	113616382	.	G	GA	459.36	PASS	AC=1;AF=0.676;AN=2;DP=1093;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:616,0,329:2,10,5,15
chr1	113636924	.	T	C	525.76	PASS	AC=2;AF=0.943;AN=2;DP=691;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:871,60,0:0,0,20,0
chr1	113657092	.	A	C	3055.09	PASS	AC=2;AF=0.955;AN=2;DP=5575;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4599,436,0:0,0,89,57
chr1	113658887	.	G	A	3585.29	PASS	AC=2;AF=0.826;AN=2;DP=4665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3837,356,0:0,0,64,55
chr1	113659065	.	ACT	A	5088.47	PASS	AC=2;AF=0.826;AN=2;DP=5943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:6686,449,0:0,0,58,91
chr1	113662249	.	G	C	160.11	PASS	AC=2;AF=0.593;AN=2;DP=535;MQ=60;set=variant2-variant4-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant24-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1426,105,0:0,0,3,32
chr1	113666351	.	G	T	96.49	PASS	AC=2;AF=0.725;AN=2;DP=529;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:439,33,0:0,0,10,1
chr1	113666353	.	G	T	96.49	PASS	AC=1;AF=0.617;AN=2;DP=422;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:29:256,0,29:1,1,9,0
chr1	113933278	.	C	A	1159.83	PASS	AC=2;AF=1;AN=2;DP=1345;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:82:895,82,0:0,0,22,6
chr1	114092306	.	A	G	896.67	PASS	AC=1;AF=0.625;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant12-variant15-variant19-variant25-variant26-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:740,0,760:8,19,9,20
chr1	114137013	.	C	CAT	496.09	PASS	AC=2;AF=0.85;AN=2;DP=433;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,11,1
chr1	114161116	.	C	A	236.23	PASS	AC=2;AF=0.826;AN=2;DP=1135;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:70:613,70,0:0,0,9,15
chr1	114191994	.	G	A	2714.68	PASS	AC=1;AF=0.636;AN=2;DP=4960;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant19-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,109:235:99:2600,0,3149:54,72,49,60
chr1	114196364	.	T	G	337.67	PASS	AC=1;AF=0.538;AN=2;DP=1811;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,45:78:99:1155,0,856:22,11,24,21
chr1	114196495	.	A	G	788.41	PASS	AC=1;AF=0.538;AN=2;DP=3416;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,64:133:99:1497,0,1725:34,35,33,31
chr1	114224782	.	AT	ATT,ATTT,A	498.3	PASS	AC=1,1,0;AF=0.476,0.085,0.012;AN=2;DP=2718;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:66:99:7,4,33,22
chr1	114228200	.	A	G	3092.37	PASS	AC=1;AF=0.636;AN=2;DP=4365;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant19-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,103:208:99:2753,0,2875:59,46,60,43
chr1	114228282	.	A	G	5205.94	PASS	AC=1;AF=0.5;AN=2;DP=2135;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant9-variant15-variant24-variant28	GT:AD:DP:GQ:PL:SB	0/1:205,189:394:99:4857,0,5311:130,75,111,78
chr1	114234690	.	C	T	426.63	PASS	AC=1;AF=0.636;AN=2;DP=461;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant19-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:323,0,334:7,2,6,3
chr1	114240319	.	T	TA	2043.5	PASS	AC=2;AF=0.826;AN=2;DP=5313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:5103,412,0:0,0,56,80
chr1	114242122	.	T	C	169.61	PASS	AC=1;AF=0.611;AN=2;DP=683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant21-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:544,0,326:8,2,11,6
chr1	114242250	.	C	T	979.16	PASS	AC=1;AF=0.523;AN=2;DP=1977;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant21-variant23-variant24-variant28-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:877,0,1256:27,29,21,17
chr1	114246453	.	C	T	223.27	PASS	AC=2;AF=0.826;AN=2;DP=740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:652,63,0:0,0,13,8
chr1	114249382	.	C	T	878.68	PASS	AC=2;AF=0.826;AN=2;DP=2457;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1484,138,0:0,0,13,33
chr1	114267347	.	C	T	867.58	PASS	AC=2;AF=0.837;AN=2;DP=2741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2186,216,0:0,0,40,32
chr1	114280717	.	A	C	163.58	PASS	AC=2;AF=0.744;AN=2;DP=1651;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1757,159,0:0,0,38,15
chr1	114302047	.	AGGC	A	108.54	PASS	AC=2;AF=1;AN=2;DP=624;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:73:1063,73,0:0,0,6,18
chr1	114307237	.	AT	A,ATT	139.17	PASS	AC=0,1;AF=0.256,0.244;AN=2;DP=5971;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant24-variant25-variant26-filterInvariant27-variant28-variant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:168:99:72,39,31,26
chr1	114309172	.	C	T	539.83	PASS	AC=1;AF=0.8;AN=2;DP=494;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:348,0,203:0,6,0,9
chr1	114339956	.	C	CTAAA	436.29	PASS	AC=2;AF=0.837;AN=2;DP=1273;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1593,108,0:0,0,25,9
chr1	114357211	.	G	A	2103.48	PASS	AC=2;AF=0.845;AN=2;DP=4414;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4821,435,0:0,0,77,68
chr1	114357750	.	G	A	52.74	PASS	AC=2;AF=0.924;AN=2;DP=153;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,2,7
chr1	114372332	.	TA	T	608.67	PASS	AC=2;AF=0.703;AN=2;DP=1772;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-filterInvariant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:936,102,0:0,0,13,21
chr1	114377093	.	A	G	1549.49	PASS	AC=2;AF=0.845;AN=2;DP=2542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,85:86:99:2566,213,0:1,0,29,56
chr1	114377148	.	T	C	426.08	PASS	AC=1;AF=0.632;AN=2;DP=502;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant18-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:570,0,452:3,13,5,14
chr1	114377568	.	A	G	3643.61	PASS	AC=2;AF=0.92;AN=2;DP=4977;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4060,429,0:0,0,62,81
chr1	114400195	.	G	GA	35.14	PASS	AC=2;AF=0.741;AN=2;DP=211;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant21-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,9:10:2:225,2,0:1,0,8,1
chr1	114401231	.	A	G	411.31	PASS	AC=2;AF=0.703;AN=2;DP=821;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:847,78,0:0,0,9,17
chr1	114401904	.	T	G	580.95	PASS	AC=2;AF=0.703;AN=2;DP=842;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1306,108,0:0,0,29,7
chr1	114423544	.	AC	A	3598.73	PASS	AC=1;AF=0.609;AN=2;DP=5327;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:134,111:245:99:3572,0,4466:67,67,51,60
chr1	114423653	.	C	T	2228.45	PASS	AC=1;AF=0.587;AN=2;DP=3749;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,95:200:99:2310,0,2841:48,57,44,51
chr1	114424601	.	C	T	1333.39	PASS	AC=2;AF=1;AN=2;DP=2508;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.643;ReadPosRankSum=1.244;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2347,231,0:0,0,31,46
chr1	114429340	.	T	C	1180.81	PASS	AC=1;AF=0.625;AN=2;DP=1825;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:951,0,1078:15,26,15,24
chr1	114438951	.	A	G	1051.39	PASS	AC=1;AF=0.625;AN=2;DP=2445;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1503,0,1620:30,32,37,29
chr1	114440258	.	C	G	43.27	PASS	AC=1;AF=0.75;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:22:195,0,22:1,0,5,2
chr1	114444444	.	T	G	983.63	PASS	AC=1;AF=0.5;AN=2;DP=493;MQ=60;set=variant2-variant12-variant15-variant23-variant26	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:1293,0,1470:31,23,30,28
chr1	114447565	.	G	A	1886.34	PASS	AC=1;AF=0.609;AN=2;DP=3719;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,108:182:99:2629,0,1796:40,34,58,50
chr1	114447776	.	C	G	1393.15	PASS	AC=1;AF=0.72;AN=2;DP=7147;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,98:191:99:2368,0,2175:41,52,42,56
chr1	114447914	.	G	T	1449.15	PASS	AC=1;AF=0.625;AN=2;DP=3025;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,81:159:99:1933,0,1945:39,39,40,41
chr1	114472218	.	A	G	337.51	PASS	AC=1;AF=0.72;AN=2;DP=1555;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,20:53:99:597,0,839:8,25,5,15
chr1	114472321	.	C	A	238.53	PASS	AC=1;AF=0.611;AN=2;DP=498;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant14-variant15-variant19-variant22-variant23-variant24-variant26-variant28-variant32-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:332,0,374:9,6,9,8
chr1	114512939	.	A	T	1923.76	PASS	AC=1;AF=0.72;AN=2;DP=1972;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:1030,0,865:6,23,7,27
chr1	114515717	.	G	A	4114.76	PASS	AC=1;AF=0.613;AN=2;DP=5905;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:105,107:212:99:2523,0,2607:57,48,53,54
chr1	114518572	.	T	C	397.58	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=2.788;FractionInformativeReads=1;MQ=60;MQRankSum=0.902;QD=11.04;ReadPosRankSum=0.744;SOR=0.368;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:426,0,421:11,7,9,9
chr1	114519351	.	T	G	1351.74	PASS	AC=1;AF=0.625;AN=2;DP=1338;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:579,0,552:11,10,12,11
chr1	114521883	.	C	G	130.3	PASS	AC=1;AF=0.763;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:97:97,0,327:7,3,3,1
chr1	114522285	.	A	G	1416.24	PASS	AC=1;AF=0.5;AN=2;DP=770;MQ=60;set=variant-variant14-variant15-variant24-variant28	GT:AD:DP:GQ:PL:SB	0/1:105,87:192:99:2184,0,2369:49,56,39,48
chr1	114523465	.	A	G	1433.91	PASS	AC=1;AF=0.611;AN=2;DP=1020;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:750,0,630:18,7,18,6
chr1	114632071	.	G	A	205.61	PASS	AC=1;AF=0.525;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant23-variant25-variant30-variant31-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,13:15:35:329,0,35:2,0,6,7
chr1	114633098	.	C	A	1026.38	PASS	AC=1;AF=0.5;AN=2;DP=764;MQ=60;set=variant2-variant14-variant15-variant16-variant28-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1445,0,1505:34,20,34,20
chr1	114633310	.	C	T	2455.97	PASS	AC=1;AF=0.524;AN=2;DP=3159;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant25-variant30-variant31-variant33-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,86:195:99:2325,0,3065:52,57,44,42
chr1	114633910	.	A	G	2621.45	PASS	AC=1;AF=0.5;AN=2;DP=1844;MQ=60;set=variant2-variant14-variant15-variant16-variant28-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:127,104:231:99:2889,0,3592:50,77,46,58
chr1	114634367	.	C	CT	3534.96	PASS	AC=2;AF=0.864;AN=2;DP=7284;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,143:146:99:3666,351,0:2,1,81,62
chr1	114634399	.	C	T	1989.26	PASS	AC=1;AF=0.591;AN=2;DP=1564;set=variant2-variant10-variant11-variant14-variant15-variant16-variant21-variant28-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:94,62:156:99:1592,0,2503:46,48,31,31
chr1	114634933	.	ACTCT	ACT,A,ACTCTCT,ACTCTCTCTCTCTCT	74.6	PASS	AC=0,0,0,1;AF=0.147,0.382,0.088,0.088;AN=2;DP=341;set=variant-variant4-variant6-variant7-variant12-variant14-variant15-variant21-filterInvariant24-variant26-variant28-variant32-variant34-variant36-variant37-variant38-variant40	GT:DP:GQ:SB	0/4:11:99:2,4,0,5
chr1	114640807	.	G	A	52.74	PASS	AC=1;AF=0.591;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:148,0,158:3,4,1,4
chr1	114641685	.	A	G	2527.95	PASS	AC=2;AF=0.75;AN=2;DP=3357;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2873,264,0:0,0,58,30
chr1	114680540	.	C	T	1340.48	PASS	AC=1;AF=0.575;AN=2;DP=5040;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:129,150:279:99:3740,0,3201:58,71,59,91
chr1	114682028	.	G	A	500.67	PASS	AC=1;AF=0.55;AN=2;DP=622;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:519,0,574:14,7,14,7
chr1	114939633	.	G	A	4416.48	PASS	AC=1;AF=0.5;AN=2;DP=881;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant35	GT:AD:DP:GQ:PL:SB	0/1:202,170:372:99:4445,0,5296:104,98,85,85
chr1	114940211	.	GT	GTT,G	255.92	PASS	AC=0,1;AF=0.462,0.038;AN=2;DP=761;set=variant-variant2-variant4-variant6-variant7-filterInvariant8-filterInvariant15-variant22-filterInvariant23-variant36-variant37-variant41-variant42	GT:DP:GQ:SB	0/2:51:99:11,27,5,8
chr1	114940632	.	CAA	CA,C	893.9	PASS	AC=2,0;AF=0.767,0.023;AN=2;DP=2348;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:73:99:0,1,22,50
chr1	114948281	.	A	G	5382.8	PASS	AC=2;AF=0.886;AN=2;DP=8416;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6913,645,0:0,0,96,119
chr1	115110683	.	A	C	4517.22	PASS	AC=1;AF=0.662;AN=2;DP=9866;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:201,166:367:99:3891,0,4911:88,113,76,90
chr1	115110989	.	C	CT	206.56	PASS	AC=1;AF=0.607;AN=2;DP=916;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-filterInvariant11-variant13-variant14-variant15-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant34-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:217,0,153:3,8,3,9
chr1	115126114	.	AAC	A,AACAC,AACACAC,AACACACAC	60.97	PASS	AC=1,0,0,0;AF=0.257,0.203,0.027,0.014;AN=2;DP=4053;set=filterInvariant-filterInvariant3-variant4-filterInvariant5-variant7-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant15-variant16-filterInvariant17-variant18-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-variant27-filterInvariant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:97:99:19,58,6,14
chr1	115126415	.	C	T	352.76	PASS	AC=1;AF=0.6;AN=2;DP=73;set=variant14-variant15-variant18-variant30-variant37	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:470,0,152:5,1,15,0
chr1	115126428	.	CA	C,CAA,CAAA	68.09	PASS	AC=0,1,0;AF=0.379,0.106,0.03;AN=2;DP=1102;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-filterInvariant29-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:32:80:20,2,7,3
chr1	115126456	.	A	AAC	623.66	PASS	AC=1;AF=0.652;AN=2;DP=2363;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,46:97:99:1420,0,1544:35,16,32,14
chr1	115128087	.	A	G	3480.88	PASS	AC=2;AF=0.884;AN=2;DP=4542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4463,402,0:0,0,58,76
chr1	115130353	.	C	T	634.04	PASS	AC=1;AF=0.5;AN=2;DP=241;MQ=60;set=variant14-variant15-variant18-variant30-variant37	GT:AD:DP:GQ:PL:SB	0/1:43,12:55:99:279,0,1107:25,18,10,2
chr1	115137057	.	C	A	872.73	PASS	AC=1;AF=0.5;AN=2;DP=409;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant18-variant30-variant37	GT:AD:DP:GQ:PL:SB	0/1:60,37:97:99:815,0,1525:31,29,20,17
chr1	115137247	.	G	A	208.6	PASS	AC=1;AF=0.6;AN=2;DP=47;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant18-variant30-variant37	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:115,0,301:2,8,1,4
chr1	115144703	.	A	G	4419.43	PASS	AC=2;AF=0.989;AN=2;DP=5457;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4003,383,0:0,0,68,60
chr1	115164554	.	C	T	1154.83	PASS	AC=1;AF=0.5;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant18-variant30-variant37	GT:AD:DP:GQ:PL:SB	0/1:83,64:147:99:1446,0,1906:42,41,37,27
chr1	115165472	.	T	A	219.8	PASS	AC=2;AF=0.893;AN=2;DP=467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:599,42,0:0,0,14,0
chr1	115166350	.	ATTGT	A	277.87	PASS	AC=2;AF=0.943;AN=2;DP=256;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,1,7
chr1	115168097	.	T	C	2232.96	PASS	AC=1;AF=0.565;AN=2;DP=2862;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant11-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,72:143:99:1960,0,1672:35,36,41,31
chr1	115197384	.	TA	T	989.34	PASS	AC=1;AF=0.5;AN=2;DP=7951;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:127,58:185:99:586,0,1795:43,84,20,38
chr1	115220420	.	CTCCTTCCTTCCTTCCT	CTCCTTCCTTCCT,CTCCTTCCTTCCTTCCTTCCTTCCTTCCT,CCTTCCTTCCTTCCTTCCT,CTCCTTCCTTCCTTCCTTCCT,CTCCT,CTCCTTCCTTCCTTCCTTCCTTCCT,CCTTCCTTCCTTCCTTCCTTCCT,CCTTCCTTCCTTCCTTCCTTCCTTCCT,CTCCTTCCT,C	188.27	PASS	AC=0,1,0,0,0,1,0,0,0,0;AF=0.208,0.111,0.056,0.097,0.056,0.111,0.042,0.014,0.083,0.014;AN=2;DP=542;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant10-variant40-variant-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	6/2:12:95:0,0,3,9
chr1	115222434	.	G	A	202.45	PASS	AC=2;AF=0.91;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:361,27,0:0,0,1,8
chr1	115238016	.	CAA	CA,CAAA,C	708.48	PASS	AC=2,0,0;AF=0.636,0.057,0.045;AN=2;DP=2106;set=Intersection	GT:DP:GQ:SB	1/1:48:34:3,2,32,11
chr1	115256669	.	G	A	566.72	PASS	AC=2;AF=0.762;AN=2;DP=1518;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1476,126,0:0,0,8,34
chr1	115259599	.	G	T	1091.52	PASS	AC=1;AF=0.594;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant15-variant16-variant17-variant19-variant24-variant26-variant33-variant34-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:630,0,562:9,11,10,14
chr1	115316158	.	T	C	1412.36	PASS	AC=2;AF=0.609;AN=2;DP=3156;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant26-variant27-variant30-variant33-variant34-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4966,479,0:0,0,96,64
chr1	115398044	.	GC	G	1490.87	PASS	AC=2;AF=1;AN=2;DP=2147;FS=0;MQ=60;MQRankSum=0;ReadPosRankSum=1.26;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1730,168,0:0,0,36,20
chr1	115401136	.	G	A	900.98	PASS	AC=2;AF=1;AN=2;DP=1671;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.612;ReadPosRankSum=1.325;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1398,105,0:0,0,29,6
chr1	115455645	.	A	T	389.53	PASS	AC=1;AF=0.667;AN=2;DP=92;MQ=60;set=variant4-variant9-variant15	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:127,0,502:12,6,5,3
chr1	115524216	.	C	T	84.86	PASS	AC=1;AF=0.597;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:199,0,190:0,5,3,5
chr1	115537933	.	A	G	1864.48	PASS	AC=1;AF=0.635;AN=2;DP=6179;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,93:218:99:2248,0,3381:60,65,42,51
chr1	115576023	.	A	G	6104.4	PASS	AC=2;AF=0.966;AN=2;DP=7743;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5746,560,0:0,0,105,82
chr1	115590920	.	C	CTATT	494.16	PASS	AC=2;AF=0.975;AN=2;DP=298;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,4,2
chr1	115590998	.	T	C	610.02	PASS	AC=2;AF=0.649;AN=2;DP=2228;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2332,263,0:0,0,46,42
chr1	115591053	.	T	G	1001.17	PASS	AC=1;AF=0.5;AN=2;DP=1717;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant29-variant30-variant31-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,38:113:99:682,0,1717:41,34,20,18
chr1	115591617	.	CT	C	7499.23	PASS	AC=1;AF=0.583;AN=2;DP=2696;MQ=60;set=variant2-variant4-variant9-variant15-variant24-variant33	GT:AD:DP:GQ:PL:SB	0/1:269,212:481:99:8081,0,13257:122,147,92,120
chr1	115591623	.	G	A	7687.28	PASS	AC=1;AF=0.583;AN=2;DP=2650;MQ=60;set=variant2-variant4-variant9-variant15-variant24-variant33	GT:AD:DP:GQ:PL:SB	0/1:274,217:491:99:8200,0,13375:125,149,91,126
chr1	115592610	.	GAC	G	8388.47	PASS	AC=2;AF=0.583;AN=2;DP=10313;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,431:431:99:19017,1298,0:0,0,214,217
chr1	115601615	.	A	G	2210.3	PASS	AC=2;AF=0.943;AN=2;DP=2592;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1817,171,0:0,0,20,37
chr1	115615358	.	T	C	220.49	PASS	AC=2;AF=0.661;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:677,51,0:0,0,13,4
chr1	115615523	.	C	T	2191.86	PASS	AC=1;AF=0.5;AN=2;DP=201;FS=0.522;FractionInformativeReads=1;MQ=60;MQRankSum=-1.492;QD=10.9;ReadPosRankSum=0.964;SOR=0.635;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:108,93:201:99:2220,0,2628:62,46,52,41
chr1	115631924	.	C	T	2391.46	PASS	AC=2;AF=0.966;AN=2;DP=4717;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3037,293,0:0,0,48,50
chr1	115829313	.	G	A	2025.67	PASS	AC=1;AF=0.594;AN=2;DP=7072;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:152,136:288:99:3203,0,3624:68,84,63,73
chr1	115880675	.	A	C	786.78	PASS	AC=1;AF=0.533;AN=2;DP=1605;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant11-variant15-variant19-variant20-variant22-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,40:98:99:994,0,1280:35,23,21,19
chr1	116184619	.	G	C	364.57	PASS	AC=1;AF=0.65;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant20-variant22-variant25-variant31-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:1007,0,1358:13,15,12,14
chr1	116184621	.	C	A	364.57	PASS	AC=1;AF=0.65;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant20-variant22-variant25-variant31-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:1007,0,1358:13,14,12,14
chr1	116185296	.	T	A	793.63	PASS	AC=1;AF=0.65;AN=2;DP=652;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant20-variant22-variant25-variant31-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:583,0,814:18,17,13,13
chr1	116206423	.	G	A	3099.41	PASS	AC=1;AF=0.5;AN=2;DP=2650;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant27-variant29-variant31-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:185,190:375:99:4643,0,4556:100,85,101,89
chr1	116224925	.	G	A	346.57	PASS	AC=2;AF=0.744;AN=2;DP=1121;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1002,84,0:0,0,21,7
chr1	116224940	.	C	A	550.68	PASS	AC=2;AF=0.744;AN=2;DP=1588;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1482,126,0:0,0,31,11
chr1	116225180	.	A	C	603.51	PASS	AC=2;AF=0.744;AN=2;DP=1404;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1426,126,0:0,0,11,31
chr1	116226749	.	TTTTATTTATTTA	TTTTATTTATTTATTTA,T	85.38	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=188;MQ=60;set=variant-variant10-variant11-variant14-variant15-variant27-variant29-variant41	GT:DP:GQ:SB	0/1:11:24:0,1,2,8
chr1	116228220	.	C	T	186.16	PASS	AC=1;AF=0.692;AN=2;DP=1374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:599,0,510:5,14,9,14
chr1	116234313	.	A	G	625.63	PASS	AC=2;AF=0.737;AN=2;DP=2092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2553,222,0:0,0,42,32
chr1	116234416	.	G	A	1514.09	PASS	AC=1;AF=0.571;AN=2;DP=1143;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:1031,0,828:19,19,15,21
chr1	116234505	.	A	G	773.41	PASS	AC=2;AF=0.737;AN=2;DP=2159;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2298,207,0:0,0,31,38
chr1	116235182	.	GA	G	4080.29	PASS	AC=1;AF=0.571;AN=2;DP=1836;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,48:91:99:1607,0,1421:20,23,22,26
chr1	116235277	.	C	T	2121.99	PASS	AC=1;AF=0.571;AN=2;DP=1374;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:942,0,1109:23,20,12,21
chr1	116235749	.	G	T	1008.58	PASS	AC=1;AF=0.5;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant15-variant27-variant35	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1387,0,1366:13,32,12,35
chr1	116236351	.	T	G	4982.11	PASS	AC=1;AF=0.635;AN=2;DP=8071;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,196:375:99:4852,0,4346:94,85,104,92
chr1	116237023	.	G	T	1219.13	PASS	AC=1;AF=0.575;AN=2;DP=871;MQ=60;set=variant2-variant3-variant5-variant7-variant12-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,23:56:99:574,0,814:13,20,11,12
chr1	116237496	.	T	A	1447.81	PASS	AC=1;AF=0.609;AN=2;DP=1160;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:719,0,1071:22,19,20,14
chr1	116238478	.	C	T	638.95	PASS	AC=1;AF=0.635;AN=2;DP=1283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,39:81:99:901,0,1071:18,24,21,18
chr1	116239368	.	G	A	963.53	PASS	AC=1;AF=0.635;AN=2;DP=1690;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,29:72:99:759,0,1253:19,24,13,16
chr1	116239633	.	T	G	9289.75	PASS	AC=1;AF=0.611;AN=2;DP=5681;set=variant4-variant6-variant7-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:217,165:382:99:3660,0,5279:104,113,78,87
chr1	116239751	.	A	G	1746.15	PASS	AC=1;AF=0.654;AN=2;DP=2904;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,93:153:99:2800,0,1672:19,41,35,58
chr1	116239841	.	A	T	1619.04	PASS	AC=1;AF=0.635;AN=2;DP=3316;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,87:161:99:2415,0,2046:44,30,44,43
chr1	116239995	.	A	T	2643.75	PASS	AC=1;AF=0.635;AN=2;DP=6147;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,134:263:99:3152,0,3084:62,67,63,71
chr1	116240026	.	G	A	9787.36	PASS	AC=1;AF=0.611;AN=2;DP=4698;set=variant4-variant6-variant7-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:153,150:303:99:3611,0,3901:74,79,74,76
chr1	116240199	.	A	T	1262.03	PASS	AC=1;AF=0.575;AN=2;DP=1266;MQ=60;set=variant2-variant3-variant5-variant7-variant12-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,29:76:99:963,0,1277:18,29,2,27
chr1	116240921	.	C	T	518.6	PASS	AC=1;AF=0.635;AN=2;DP=765;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:701,0,388:0,11,0,19
chr1	116242737	.	CAT	C	8176.54	PASS	AC=1;AF=0.575;AN=2;DP=3358;MQ=60;set=variant2-variant3-variant5-variant7-variant12-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,93:196:99:3559,0,4526:56,47,51,42
chr1	116242844	.	AT	A,ATT	4645.78	PASS	AC=1,0;AF=0.589,0.018;AN=2;DP=4600;MQ=60;set=variant2-variant3-variant5-filterInvariant6-variant7-filterInvariant8-variant11-variant12-variant13-variant15-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant24-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:151:99:28,39,37,47
chr1	116243230	.	C	G	2248.67	PASS	AC=2;AF=0.711;AN=2;DP=4863;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4244,418,0:0,0,78,62
chr1	116243380	.	G	A	979.63	PASS	AC=2;AF=0.711;AN=2;DP=3143;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,102:103:99:3204,298,0:1,0,40,62
chr1	116243877	.	G	A	606.68	PASS	AC=1;AF=0.625;AN=2;DP=1526;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,31:85:99:793,0,1701:38,16,21,10
chr1	116245809	.	C	T	289.6	PASS	AC=2;AF=0.7;AN=2;DP=854;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:991,84,0:0,0,5,23
chr1	116247790	.	G	A	779.38	PASS	AC=2;AF=0.64;AN=2;DP=1787;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2331,214,0:0,0,49,23
chr1	116260532	.	A	T	912.98	PASS	AC=2;AF=0.722;AN=2;DP=2826;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2914,241,0:0,0,33,47
chr1	116260544	.	C	T	3964.75	PASS	AC=1;AF=0.579;AN=2;DP=1346;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1085,0,730:18,17,14,28
chr1	116260604	.	G	A	451.95	PASS	AC=2;AF=0.708;AN=2;DP=1376;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1027,105,0:0,0,13,22
chr1	116268178	.	GAAAA	GAA,GA,GAAA,G,GAAAAA	187.7	PASS	AC=1,1,0,0,0;AF=0.328,0.207,0.017,0.086,0.034;AN=2;DP=1868;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	2/1:37:99:0,2,17,18
chr1	116268283	.	C	T	324.84	PASS	AC=2;AF=0.722;AN=2;DP=916;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1101,104,0:0,0,12,23
chr1	116283343	.	A	G	1910	PASS	AC=2;AF=0.869;AN=2;DP=3358;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3265,311,0:0,0,62,42
chr1	116283526	.	G	A	882.94	PASS	AC=2;AF=0.869;AN=2;DP=1334;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1279,111,0:0,0,9,28
chr1	116287634	.	A	G	1135.48	PASS	AC=1;AF=0.667;AN=2;DP=1062;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:783,0,655:4,18,8,21
chr1	116287651	.	G	A	795.79	PASS	AC=1;AF=0.667;AN=2;DP=787;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:547,0,413:3,13,6,16
chr1	116287682	.	T	C	860.7	PASS	AC=1;AF=0.621;AN=2;DP=568;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:349,0,247:1,7,1,9
chr1	116310818	.	G	C	282.99	PASS	AC=1;AF=0.615;AN=2;DP=627;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:396,0,497:13,1,11,3
chr1	116310967	.	T	C	5107.94	PASS	AC=1;AF=0.615;AN=2;DP=4482;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,101:189:99:2441,0,2232:43,45,58,43
chr1	116311198	.	T	C	1594.43	PASS	AC=2;AF=0.966;AN=2;DP=2757;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2441,218,0:0,0,37,36
chr1	116311366	.	GCACACA	GCACACACACACACA,GCACACACACACA,G	318.35	PASS	AC=1,0,0;AF=0.477,0.136,0.023;AN=2;DP=471;set=variant2-variant4-variant5-variant6-variant7-variant11-variant14-variant15-variant18-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:28:99:4,15,2,7
chr1	116380029	.	T	C	3489.23	PASS	AC=1;AF=0.724;AN=2;DP=2913;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,54:116:99:1422,0,1642:23,39,18,36
chr1	116380172	.	C	T	1396.97	PASS	AC=1;AF=0.667;AN=2;DP=1568;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,37:59:99:910,0,483:9,13,19,18
chr1	116382318	.	A	G	1931.12	PASS	AC=2;AF=0.895;AN=2;DP=2477;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2501,222,0:0,0,33,41
chr1	116382511	.	A	T	2523.41	PASS	AC=2;AF=1;AN=2;DP=2842;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3200,278,0:0,0,59,34
chr1	116382778	.	T	C	4069.38	PASS	AC=2;AF=1;AN=2;DP=5118;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4909,447,0:0,0,67,82
chr1	116383300	.	T	C	2991.08	PASS	AC=2;AF=1;AN=2;DP=4151;FS=0;MQ=60;MQRankSum=-0.297;ReadPosRankSum=1.242;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4223,368,0:0,0,36,87
chr1	116383333	.	C	A	1131.95	PASS	AC=1;AF=0.583;AN=2;DP=1037;MQ=60;set=variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant19-variant20-variant28-variant30-variant34-variant35-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:1288,0,1419:12,34,11,31
chr1	116383364	.	AT	ATTT,A,ATT,ATTTT	512.1	PASS	AC=0,0,0,1;AF=0.2,0.029,0.214,0.243;AN=2;DP=1687;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant43-variant44	GT:DP:GQ:SB	0/4:47:99:4,11,13,19
chr1	116384090	.	G	A	6262.12	PASS	AC=2;AF=0.925;AN=2;DP=7512;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:7603,727,0:0,0,126,117
chr1	116384580	.	C	T	8655.27	PASS	AC=1;AF=0.648;AN=2;DP=6866;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,155:329:99:4294,0,4985:58,116,58,97
chr1	116384773	.	A	G	2713.84	PASS	AC=1;AF=0.741;AN=2;DP=3199;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,75:152:99:1690,0,1849:40,37,31,44
chr1	116385122	.	T	C	2095.62	PASS	AC=1;AF=0.648;AN=2;DP=1405;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,18:46:99:408,0,743:14,14,9,9
chr1	116385171	.	C	T	849.65	PASS	AC=1;AF=0.741;AN=2;DP=1477;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:541,0,552:11,12,9,13
chr1	116385288	.	C	T	1524.92	PASS	AC=1;AF=0.648;AN=2;DP=1008;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:778,0,575:11,10,17,15
chr1	116385309	.	C	A	592.2	PASS	AC=1;AF=0.724;AN=2;DP=1032;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:500,0,728:17,12,11,10
chr1	116385467	.	A	G	1535.48	PASS	AC=1;AF=0.648;AN=2;DP=1073;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,41:56:99:1054,0,379:8,7,22,19
chr1	116385721	.	T	C	198.61	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2441;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:79,31:110:99:343,0,3935:7,72,31,0
chr1	116385727	.	A	C	456.9	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2606;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:72,27:99:99:348,0,3817:7,65,27,0
chr1	116385732	.	T	C	187.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1811;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:68,18:86:99:345,0,3653:4,64,18,0
chr1	116386105	.	G	A	1839.83	PASS	AC=1;AF=0.583;AN=2;DP=2101;MQ=60;set=variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant19-variant20-variant28-variant30-variant34-variant35-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,68:169:99:1369,0,2642:47,54,30,38
chr1	116386139	.	G	A	3449.83	PASS	AC=2;AF=1;AN=2;DP=4473;FS=0;MQRankSum=1.597;ReadPosRankSum=1.597;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4189,384,0:0,0,60,68
chr1	116386243	.	C	T	2913.39	PASS	AC=1;AF=0.583;AN=2;DP=3711;MQ=60;set=variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant19-variant20-variant28-variant30-variant34-variant35-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,134:280:99:3255,0,5709:74,72,81,53
chr1	116386244	.	C	T	6155.89	PASS	AC=1;AF=0.724;AN=2;DP=6363;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,147:282:99:3506,0,5162:82,53,75,72
chr1	116386542	.	CGTGTGT	C,CGT,CGTGT,CATGTGTGT	412.13	PASS	AC=0,0,1,0;AF=0.184,0.237,0.263,0.079;AN=2;DP=454;set=variant2-variant5-variant9-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant25-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40	GT:DP:GQ:SB	0/3:25:99:2,9,2,12
chr1	116386545	.	G	A	72.92	PASS	AC=1;AF=0.7;AN=2;DP=114;set=variant9-filterInvariant15-variant20-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:62:62,0,380:1,9,0,5
chr1	116534852	.	C	T	2165.52	PASS	AC=2;AF=0.773;AN=2;DP=3592;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3614,351,0:0,0,48,69
chr1	116569530	.	G	C	1501.42	PASS	AC=2;AF=0.955;AN=2;DP=2085;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1677,165,0:0,0,30,25
chr1	116574306	.	G	A	1261.76	PASS	AC=2;AF=0.869;AN=2;DP=2225;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1979,170,0:0,0,20,37
chr1	116577981	.	G	A	1664.38	PASS	AC=2;AF=1;AN=2;DP=1864;FS=0;MQ=60;MQRankSum=-0.139;ReadPosRankSum=0.208;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1495,120,0:0,0,9,31
chr1	116607254	.	G	T	1111.4	PASS	AC=2;AF=0.989;AN=2;DP=815;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.935;ReadPosRankSum=-1.203;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1002,75,0:0,0,3,22
chr1	116609126	.	TC	T	3546.49	PASS	AC=2;AF=0.845;AN=2;DP=3970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3820,334,0:0,0,64,47
chr1	116610227	.	G	A	8648.57	PASS	AC=2;AF=0.884;AN=2;DP=11065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,297:297:99:8990,889,0:0,0,115,182
chr1	116610388	.	A	G	1927.79	PASS	AC=2;AF=1;AN=2;DP=3210;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2971,264,0:0,0,45,43
chr1	116610599	.	G	GA	7231.31	PASS	AC=2;AF=0.75;AN=2;DP=7786;MQ=60;set=variant-variant2-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,263:264:99:7542,764,0:1,0,137,126
chr1	116611548	.	A	G	6852.16	PASS	AC=2;AF=0.955;AN=2;DP=8775;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,281:281:99:8387,842,0:0,0,134,147
chr1	116611705	.	T	C	2860.36	PASS	AC=2;AF=0.845;AN=2;DP=4181;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3346,330,0:0,0,43,68
chr1	116916056	.	C	T	1899.43	PASS	AC=1;AF=0.5;AN=2;DP=1208;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant15-variant18-variant26-variant35-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,62:134:99:1398,0,1965:35,37,37,25
chr1	116926662	.	A	G	1000.23	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=1.695;FractionInformativeReads=1;MQ=60;MQRankSum=0.568;QD=10.99;ReadPosRankSum=0.417;SOR=0.59;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:1028,0,1201:21,25,23,22
chr1	116932563	.	T	A	683.36	PASS	AC=1;AF=0.863;AN=2;DP=624;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:218,0,228:0,6,1,6
chr1	116940481	.	CT	C,CTT	65.51	PASS	AC=1,0;AF=0.409,0.091;AN=2;DP=3947;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-variant6-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant21-filterInvariant23-filterInvariant25-filterInvariant27-filterInvariant29-filterInvariant30-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:143:99:68,51,15,9
chr1	116948712	.	G	A	2094.62	PASS	AC=1;AF=0.829;AN=2;DP=2539;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,30:78:99:833,0,1214:15,33,12,18
chr1	117078462	.	CAAA	CA,CAA,C	85.62	PASS	AC=1,0,0;AF=0.333,0.083,0.083;AN=2;DP=67;set=variant2-variant3-variant15-variant23-variant24-variant33	GT:DP:GQ:SB	0/1:9:39:1,2,6,0
chr1	117142613	.	C	T	268.02	PASS	AC=1;AF=0.5;AN=2;DP=4958;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,17:103:99:167,0,2342:52,34,12,5
chr1	117142641	.	G	A	375.97	PASS	AC=1;AF=0.5;AN=2;DP=6944;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,27:143:99:396,0,3008:67,49,19,8
chr1	117142700	.	C	A	572.75	PASS	AC=1;AF=0.5;AN=2;DP=10247;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,52:207:99:851,0,4203:88,67,32,20
chr1	117142736	.	A	G	1359.71	PASS	AC=1;AF=0.5;AN=2;DP=12259;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,141:240:99:3417,0,1990:55,44,81,60
chr1	117142855	.	C	T	1729.59	PASS	AC=1;AF=0.5;AN=2;DP=12618;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,78:239:99:1453,0,4305:78,83,37,41
chr1	117142868	.	C	T	2622.4	PASS	AC=1;AF=0.5;AN=2;DP=11869;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,68:235:99:2309,0,8629:81,86,30,38
chr1	117142869	.	A	G	2622.4	PASS	AC=1;AF=0.5;AN=2;DP=11823;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,66:232:99:2309,0,8629:81,85,28,38
chr1	117142977	.	A	C,G	193.25	PASS	AC=0,1;AF=0.047,0.453;AN=2;DP=6731;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/2:158:99:58,73,8,19
chr1	117146504	.	G	A	495.41	PASS	AC=1;AF=0.5;AN=2;DP=18380;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:348,64:412:99:328,0,9139:170,178,32,32
chr1	117146545	.	C	A	338.64	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3666;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:324,62:386:99:408,0,8514:135,189,30,32
chr1	117146563	.	G	A	1169.47	PASS	AC=1;AF=0.5;AN=2;DP=15374;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:277,57:334:99:1390,0,11524:114,163,26,31
chr1	117146571	.	A	G	1065.92	PASS	AC=1;AF=0.5;AN=2;DP=14109;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:263,49:312:99:1238,0,11297:106,157,20,29
chr1	117146592	.	C	G	342.92	PASS	AC=1;AF=0.5;AN=2;DP=10920;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:209,31:240:99:145,0,5688:80,129,10,21
chr1	117150928	.	C	T	515	PASS	AC=1;AF=0.5;AN=2;DP=3765;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,20:84:99:660,0,2868:27,37,8,12
chr1	117150933	.	G	A	543.75	PASS	AC=1;AF=0.5;AN=2;DP=3567;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,19:78:99:631,0,2789:24,35,8,11
chr1	117150966	.	G	T	192.93	PASS	AC=1;AF=0.5;AN=2;DP=2180;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,11:48:99:164,0,1076:12,25,5,6
chr1	117156326	.	C	T	220.39	PASS	AC=1;AF=0.5;AN=2;DP=3001;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant22-filterInvariant23-filterInvariant24-variant26-variant27-filterInvariant28-variant29-variant31-variant32-filterInvariant33-variant34-filterInvariant36-variant37-variant39-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,6:85:95:95,0,6986:46,33,5,1
chr1	117156333	.	T	C	290.13	PASS	AC=1;AF=0.5;AN=2;DP=3612;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,8:95:65:65,0,7515:49,38,6,2
chr1	117156340	.	C	T	350.62	PASS	AC=1;AF=0.5;AN=2;DP=3992;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,12:108:99:120,0,7631:53,43,8,4
chr1	117156459	.	C	T	608.98	PASS	AC=1;AF=0.5;AN=2;DP=7812;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,43:162:99:592,0,3054:64,55,21,22
chr1	117156490	.	T	C	497.11	PASS	AC=1;AF=0.5;AN=2;DP=7424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,36:151:99:500,0,3220:64,51,18,18
chr1	117156584	.	T	C	424.83	PASS	AC=1;AF=0.5;AN=2;DP=6974;set=variant-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,28:172:99:715,0,8012:76,68,12,16
chr1	117156585	.	G	A	424.83	PASS	AC=1;AF=0.5;AN=2;DP=6965;set=variant-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,27:173:99:715,0,8012:76,70,12,15
chr1	117156600	.	T	C	60.03	PASS	AC=1;AF=0.5;AN=2;DP=5551;set=filterInvariant-variant3-filterInvariant4-filterInvariant5-filterInvariant7-variant8-variant9-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant22-variant23-filterInvariant24-variant26-filterInvariant27-variant28-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:151,22:173:64:64,0,3956:77,74,9,13
chr1	117158857	.	C	T	224.26	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=2.785;FractionInformativeReads=1;MQ=44.85;MQRankSum=-4.857;QD=2.95;ReadPosRankSum=-3.248;SOR=0.665;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:65,11:76:99:252,0,2645:28,37,6,5
chr1	117158862	.	G	A	224.26	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=2.76;FractionInformativeReads=1;MQ=43.19;MQRankSum=-4.772;QD=3.07;ReadPosRankSum=-2.244;SOR=0.676;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:62,11:73:99:252,0,2645:27,35,6,5
chr1	117158898	.	C	T	62.52	PASS	AC=1;AF=0.5;AN=2;DP=664;set=filterInvariant8-filterInvariant9-filterInvariant11-variant12-filterInvariant15-filterInvariant18-variant23-filterInvariant24-filterInvariant27-filterInvariant29-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,13:69:99:119,0,1470:24,32,7,6
chr1	117158909	.	C	T	100.49	PASS	AC=1;AF=0.5;AN=2;DP=696;set=filterInvariant8-variant9-filterInvariant11-variant12-filterInvariant15-filterInvariant17-variant18-variant23-filterInvariant24-filterInvariant27-filterInvariant29-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:49,13:62:99:139,0,1303:21,28,7,6
chr1	117158934	.	C	T	127.47	PASS	AC=1;AF=0.5;AN=2;DP=817;set=variant8-variant9-variant11-variant12-variant15-filterInvariant16-filterInvariant17-variant18-variant23-variant24-filterInvariant25-variant27-filterInvariant28-variant29-filterInvariant35-filterInvariant36-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:45,13:58:99:152,0,1105:18,27,7,6
chr1	117158972	.	A	G	34.92	PASS	AC=1;AF=0.5;AN=2;DP=817;set=filterInvariant-variant8-variant9-filterInvariant10-variant11-variant12-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant23-variant25-variant26-variant27-variant28-filterInvariant29-variant32-variant35-variant36-variant37-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:35,12:47:99:156,0,814:13,22,6,6
chr1	117210149	.	A	C,ACTCCCCG	471.64	PASS	AC=1,0;AF=0.828,0.047;AN=2;DP=279;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	0/1:14:99:7,1,3,3
chr1	117236970	.	G	C	973.78	PASS	AC=1;AF=0.671;AN=2;DP=2635;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1376,0,1067:9,29,12,37
chr1	117297734	.	A	G	3266.44	PASS	AC=1;AF=0.595;AN=2;DP=1485;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant23-variant25-variant26-variant27-variant30-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:1059,0,1106:8,29,6,28
chr1	117487710	.	A	G	5540.81	PASS	AC=2;AF=0.909;AN=2;DP=6239;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:6964,473,0:0,0,65,91
chr1	117487711	.	T	A	5540.81	PASS	AC=2;AF=0.909;AN=2;DP=6178;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6964,473,0:0,0,64,90
chr1	117487884	.	G	A	838.55	PASS	AC=1;AF=0.756;AN=2;DP=798;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:418,0,372:1,10,5,10
chr1	117509981	.	G	A	5716.6	PASS	AC=1;AF=0.579;AN=2;DP=1779;MQ=60;set=variant3-variant5-variant6-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant26-variant27-variant33-variant35-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:1365,0,2413:20,36,15,23
chr1	117509987	.	C	T	5750.85	PASS	AC=1;AF=0.579;AN=2;DP=1709;MQ=60;set=variant3-variant5-variant6-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant26-variant27-variant33-variant35-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,37:92:99:1368,0,2391:18,37,13,24
chr1	117510061	.	C	T	2192.17	PASS	AC=1;AF=0.579;AN=2;DP=738;MQ=60;set=variant3-variant5-variant6-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant26-variant27-variant33-variant35-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:384,0,690:9,16,2,11
chr1	117527645	.	GTCT	G	589.47	PASS	AC=1;AF=0.609;AN=2;DP=1673;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant28-variant32-variant33-variant35-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,40:91:99:1527,0,2306:15,36,14,26
chr1	117529458	.	G	A	535.38	PASS	AC=1;AF=0.606;AN=2;DP=3825;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,68:129:99:1697,0,1592:39,22,42,26
chr1	117530193	.	CTTTTT	CTTT,CTT,C,CT,CTTTT	213.95	PASS	AC=1,0,0,0,0;AF=0.456,0.176,0.015,0.015,0.015;AN=2;DP=985;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:11:41:1,2,0,8
chr1	117530273	.	A	G	184.13	PASS	AC=1;AF=0.657;AN=2;DP=746;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:346,0,296:3,8,5,5
chr1	117530477	.	G	A	398.11	PASS	AC=1;AF=0.657;AN=2;DP=1074;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:364,0,559:12,12,9,8
chr1	117530507	.	C	T	486.82	PASS	AC=1;AF=0.657;AN=2;DP=1120;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:990,0,1070:8,12,13,12
chr1	117530511	.	C	T	486.82	PASS	AC=1;AF=0.657;AN=2;DP=1121;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:1011,0,1067:8,12,13,13
chr1	117531620	.	G	A	256.59	PASS	AC=1;AF=0.606;AN=2;DP=1007;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:1007,0,676:12,15,15,17
chr1	117531813	.	T	C	356.95	PASS	AC=1;AF=0.657;AN=2;DP=2015;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:935,0,957:16,17,17,19
chr1	117531911	.	A	G	288.01	PASS	AC=1;AF=0.643;AN=2;DP=1645;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:786,0,704:9,15,14,14
chr1	117532372	.	G	T	3028.76	PASS	AC=1;AF=0.587;AN=2;DP=5389;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant28-variant32-variant33-variant35-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:158,124:282:99:2992,0,4287:73,85,55,69
chr1	117532790	.	C	T	5244.14	PASS	AC=1;AF=0.578;AN=2;DP=8512;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:162,148:310:99:3747,0,4076:89,73,89,59
chr1	117533010	.	G	GTTA	3097.22	PASS	AC=1;AF=0.657;AN=2;DP=4590;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,68:170:99:2527,0,4335:35,67,24,44
chr1	117554421	.	A	G	1499	PASS	AC=1;AF=0.548;AN=2;DP=2290;MQ=60;set=variant5-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant25-variant28-variant29-variant30-variant32-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,80:156:99:1963,0,1939:42,34,43,37
chr1	117555898	.	G	A	862.71	PASS	AC=2;AF=1;AN=2;DP=1128;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:820,75,0:0,0,17,8
chr1	117559726	.	A	G	3791.22	PASS	AC=2;AF=0.989;AN=2;DP=5403;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4976,489,0:0,0,86,77
chr1	117602960	.	C	A	8260.14	PASS	AC=2;AF=0.881;AN=2;DP=10195;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,321:321:99:9842,960,0:0,0,194,127
chr1	117603188	.	G	T	1494.82	PASS	AC=1;AF=0.729;AN=2;DP=2689;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,37:99:99:1045,0,1777:18,44,8,29
chr1	117617705	.	A	G	1376.46	PASS	AC=1;AF=0.719;AN=2;DP=3102;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1766,0,1236:23,27,33,29
chr1	117618067	.	C	T	1046.48	PASS	AC=1;AF=0.719;AN=2;DP=2445;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1196,0,872:19,16,21,22
chr1	117618722	.	T	C	1140.06	PASS	AC=2;AF=1;AN=2;DP=1148;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:925,81,0:0,0,20,7
chr1	117621947	.	G	C	203.05	PASS	AC=1;AF=0.587;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant29-variant30-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:483,0,214:6,1,11,3
chr1	117622286	.	A	G	2124.53	PASS	AC=1;AF=0.743;AN=2;DP=4364;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,60:136:99:1447,0,1883:32,44,29,31
chr1	117628869	.	ATG	ATGTG,A,ATGTGTG	282.52	PASS	AC=1,0,0;AF=0.35,0.15,0.025;AN=2;DP=238;set=variant-variant2-variant3-variant4-variant8-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant35-variant37-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:14:99:6,0,8,0
chr1	117631391	.	T	C	2219.07	PASS	AC=2;AF=0.907;AN=2;DP=2436;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2658,246,0:0,0,55,27
chr1	117633366	.	T	C	192.92	PASS	AC=1;AF=0.577;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant13-variant15-variant16-variant19-variant29-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:173,0,280:0,7,0,5
chr1	117633918	.	C	T	1106.02	PASS	AC=1;AF=0.5;AN=2;DP=485;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant24-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,39:99:99:928,0,1519:30,30,19,20
chr1	117639828	.	TA	T	106.29	PASS	AC=2;AF=0.583;AN=2;DP=369;MQ=60;set=variant2-variant3-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant28-variant29-variant30-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,30:32:40:791,40,0:1,1,24,6
chr1	117644937	.	TCCCTGCAGCCA	T	1487.4	PASS	AC=2;AF=0.56;AN=2;DP=2522;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3875,267,0:0,0,40,48
chr1	117654638	.	G	T	43.74	PASS	AC=2;AF=0.625;AN=2;DP=151;FS=0;MQ=60;set=variant2-variant3-variant7-variant9-variant13-variant15-variant16-variant17-variant20-variant27-variant29-variant30-variant34-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:319,24,0:0,0,6,2
chr1	117654777	.	ATAAC	A	106.67	PASS	AC=2;AF=0.568;AN=2;DP=375;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:855,57,0:0,0,7,12
chr1	117656088	.	A	G	1404.54	PASS	AC=2;AF=0.552;AN=2;DP=3702;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4094,392,0:0,0,70,61
chr1	117656276	.	A	G	285.79	PASS	AC=2;AF=0.552;AN=2;DP=626;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1051,96,0:0,0,9,23
chr1	117660608	.	C	T	862.64	PASS	AC=2;AF=0.905;AN=2;DP=1083;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:797,72,0:0,0,16,8
chr1	117660754	.	C	T	1415.34	PASS	AC=2;AF=0.563;AN=2;DP=2997;MQ=60;set=variant2-variant3-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4440,441,0:0,0,87,60
chr1	117690272	.	G	A	558.31	PASS	AC=1;AF=0.864;AN=2;DP=3044;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,48:88:99:1118,0,1050:21,19,24,24
chr1	117696037	.	G	A	1091.81	PASS	AC=1;AF=0.5;AN=2;DP=1183;MQ=60;set=variant-variant3-variant5-variant12-variant13-variant15-variant24-variant25-variant34-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,68:133:99:1817,0,1578:30,35,35,33
chr1	117696083	.	ATT	A,AT	336.36	PASS	AC=0,1;AF=0.097,0.403;AN=2;DP=2941;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:99:99:19,22,23,35
chr1	117696148	.	A	G	514.69	PASS	AC=1;AF=0.5;AN=2;DP=462;MQ=60;set=variant-variant3-variant5-variant12-variant13-variant15-variant24-variant25-variant34-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,39:66:99:1085,0,806:6,21,10,29
chr1	117715288	.	T	C	201.04	PASS	AC=1;AF=0.563;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant12-variant13-variant15-variant24-variant25-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:183,0,156:0,4,1,4
chr1	117715817	.	C	A	251.29	PASS	AC=1;AF=0.5;AN=2;DP=380;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant12-variant13-variant15-variant24-variant25-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:695,0,791:19,9,16,11
chr1	117715987	.	AACAC	AACACACAC,AACACAC,A,AACACACACAC,AACACACACACACAC	523.65	PASS	AC=1,0,0,0,0;AF=0.171,0.524,0.012,0.012,0.012;AN=2;DP=1112;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:20:99:1,10,4,5
chr1	117910026	.	G	A	1024.21	PASS	AC=1;AF=0.6;AN=2;DP=673;MQ=60;set=variant5-variant9-variant10-variant11-variant15-variant16-variant20-variant29-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:41,29:70:99:686,0,1093:20,21,14,15
chr1	117910682	.	G	A	6198.16	PASS	AC=1;AF=0.86;AN=2;DP=6810;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,96:166:99:2429,0,1801:37,33,51,45
chr1	117957288	.	A	G	787.57	PASS	AC=1;AF=0.86;AN=2;DP=721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:201,0,455:12,3,7,0
chr1	118065841	.	A	G	3098.21	PASS	AC=1;AF=0.614;AN=2;DP=5402;MQ=60;set=variant-variant4-variant6-variant8-variant12-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:162,154:316:99:3876,0,4080:70,92,68,86
chr1	118068558	.	G	A	5610.09	PASS	AC=1;AF=0.536;AN=2;DP=2768;MQ=60;set=variant8-variant12-variant14-variant15-variant18-variant22-variant25-variant26-variant28-variant29-variant33-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:120,123:243:99:2928,0,3025:74,46,71,52
chr1	118068699	.	C	G	3253.99	PASS	AC=1;AF=0.614;AN=2;DP=5651;MQ=60;set=variant-variant4-variant6-variant8-variant12-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:189,142:331:99:3820,0,5085:102,87,76,66
chr1	118068934	.	G	A	4634.41	PASS	AC=1;AF=0.688;AN=2;DP=4891;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,61:142:99:1751,0,2389:20,61,11,50
chr1	118069063	.	G	A	192.99	PASS	AC=1;AF=0.925;AN=2;DP=354;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:247,0,104:3,0,7,0
chr1	118069696	.	T	C	4893.76	PASS	AC=1;AF=0.614;AN=2;DP=8251;set=variant-variant4-variant6-variant8-variant12-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:239,218:457:99:5428,0,6073:157,82,143,75
chr1	118070506	.	A	G	520.46	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:1075,0,1132:27,7,25,12
chr1	118071289	.	A	G	1299.62	PASS	AC=1;AF=0.563;AN=2;DP=867;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant15-variant16-variant20-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:59,60:119:99:1446,0,1534:33,26,36,24
chr1	118170466	.	CTGTG	CTG,C	1212.25	PASS	AC=1,0;AF=0.521,0.021;AN=2;DP=1739;set=variant-variant4-filterInvariant5-variant6-variant7-variant8-variant11-variant12-variant14-filterInvariant15-variant19-variant20-variant23-filterInvariant24-variant26-variant27-filterInvariant33-variant35-variant36-filterInvariant37-variant38-variant39-variant43-variant44	GT:DP:GQ:SB	0/1:85:99:48,24,9,4
chr1	118320859	.	T	A	611.96	PASS	AC=2;AF=1;AN=2;DP=1028;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:738,63,0:0,0,15,6
chr1	118321119	.	T	C	2239.02	PASS	AC=2;AF=0.919;AN=2;DP=2388;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2082,210,0:0,0,37,33
chr1	118420452	.	C	G	3279.82	PASS	AC=1;AF=0.548;AN=2;DP=9786;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:209,186:395:99:4633,0,5260:99,110,85,101
chr1	118424269	.	C	T	586.74	PASS	AC=1;AF=0.548;AN=2;DP=2106;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:720,0,1186:28,16,19,11
chr1	118429131	.	C	T	601.33	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=3.706;FractionInformativeReads=1;MQ=60;MQRankSum=1.119;QD=15.42;ReadPosRankSum=-0.751;SOR=0.188;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:630,0,560:15,2,16,6
chr1	118484265	.	G	A	2108.48	PASS	AC=2;AF=1;AN=2;DP=3076;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2397,234,0:0,0,45,33
chr1	118484726	.	A	C	498.54	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.785;QD=12.78;ReadPosRankSum=1.099;SOR=0.648;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:527,0,380:6,10,9,14
chr1	118491215	.	GT	GTT,G	67.58	PASS	AC=1,0;AF=0.5,0.026;AN=2;DP=347;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant12-variant14-variant15-filterInvariant16-variant19-variant22-variant24-variant25-variant31-variant33-variant37-variant41-variant43	GT:DP:GQ:SB	0/1:17:99:2,7,2,6
chr1	118501390	.	CT	C,CTT	85.27	PASS	AC=1,0;AF=0.233,0.267;AN=2;DP=287;set=variant-variant5-variant10-variant12-variant14-variant15-variant19-variant24-variant26-variant29-filterInvariant31-variant34-variant38-variant42-variant43	GT:DP:GQ:SB	0/1:17:99:6,3,5,3
chr1	118502732	.	CGTGTGTGT	CGTGT,CGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGT,CGT,C	705.63	PASS	AC=1,0,0,0,0,0;AF=0.317,0.037,0.183,0.244,0.049,0.012;AN=2;DP=1464;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:13:99:3,3,1,6
chr1	118507893	.	T	C	2940.71	PASS	AC=1;AF=0.569;AN=2;DP=7650;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,122:284:99:3157,0,4460:82,80,58,64
chr1	118526592	.	G	A	761.44	PASS	AC=1;AF=0.929;AN=2;DP=814;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:212,0,324:2,9,1,6
chr1	118565953	.	G	A	164.41	PASS	AC=1;AF=0.589;AN=2;DP=923;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant33-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:604,0,635:15,11,17,5
chr1	118579224	.	G	GAC	67.13	PASS	AC=1;AF=0.56;AN=2;DP=221;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:196,0,143:4,2,5,2
chr1	118583408	.	G	A	2434.18	PASS	AC=1;AF=0.589;AN=2;DP=4995;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant33-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,70:162:99:1790,0,2219:40,52,30,40
chr1	118617274	.	C	T	1496.74	PASS	AC=1;AF=0.597;AN=2;DP=5134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,92:178:99:2123,0,1877:36,50,43,49
chr1	118617372	.	G	A	763.82	PASS	AC=1;AF=0.5;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant20-variant27-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:34,19:53:99:545,0,1131:6,28,3,16
chr1	118623681	.	TACACAC	T,TAC,TACACACAC	590.68	PASS	AC=1,0,1;AF=0.525,0.088,0.075;AN=2;DP=762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:24:99:0,0,20,4
chr1	118644430	.	A	G	1206.57	PASS	AC=1;AF=0.645;AN=2;DP=3190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1041,0,1172:25,19,25,21
chr1	119427228	.	GAA	GA,G,GAAA	508.6	PASS	AC=0,1,0;AF=0.419,0.054,0.041;AN=2;DP=6389;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-filterInvariant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-filterInvariant36-variant38-variant39-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:150:99:57,55,20,18
chr1	119456589	.	C	T	219.05	PASS	AC=1;AF=0.5;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant17-variant25-variant28-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:380,0,345:9,2,10,2
chr1	119466275	.	A	G	1502.29	PASS	AC=1;AF=0.738;AN=2;DP=2016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:824,0,630:6,15,10,19
chr1	119469188	.	G	T	1078.6	PASS	AC=1;AF=0.571;AN=2;DP=1809;MQ=60;set=variant9-variant15-variant19-variant20-variant21-variant23-variant26-variant30-variant34-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,79:159:99:1870,0,1964:37,43,39,40
chr1	119574074	.	G	C	2435.36	PASS	AC=1;AF=0.726;AN=2;DP=6091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,120:222:99:3162,0,2636:56,46,67,53
chr1	120162152	.	A	T	16386.7	PASS	AC=1;AF=0.703;AN=2;DP=18200;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:281,265:546:99:6304,0,6782:143,138,128,137
chr1	120162442	.	T	C	7137.37	PASS	AC=1;AF=0.703;AN=2;DP=6473;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,102:193:99:2868,0,2319:35,56,35,67
chr1	120162636	.	GAAAC	G	15871	PASS	AC=1;AF=0.703;AN=2;DP=12390;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:219,200:419:99:7638,0,9982:136,83,123,77
chr1	120162787	.	T	C	19730.7	PASS	AC=1;AF=0.703;AN=2;DP=19124;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:338,327:665:99:8307,0,8869:174,164,157,170
chr1	120163247	.	T	C	12081.5	PASS	AC=1;AF=0.703;AN=2;DP=9236;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,196:332:99:7816,0,8102:68,68,98,98
chr1	120163248	.	G	A	12081.5	PASS	AC=1;AF=0.703;AN=2;DP=9283;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,196:332:99:7816,0,8102:68,68,97,99
chr1	120163506	.	CT	C	18094	PASS	AC=1;AF=0.703;AN=2;DP=19999;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:283,267:550:99:10061,0,11821:139,144,139,128
chr1	120163531	.	T	C	18027.2	PASS	AC=1;AF=0.703;AN=2;DP=19522;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:278,279:557:99:10322,0,11537:134,144,138,141
chr1	120163831	.	A	G	5826.85	PASS	AC=1;AF=0.703;AN=2;DP=5700;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,94:160:99:2429,0,1611:29,37,38,56
chr1	120164252	.	G	A	3284.91	PASS	AC=1;AF=0.703;AN=2;DP=2961;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,38:105:99:1172,0,2077:18,49,10,28
chr1	120164545	.	T	TG	827.32	PASS	AC=1;AF=0.686;AN=2;DP=1087;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:713,0,379:9,7,16,9
chr1	120164738	.	C	T	1184.56	PASS	AC=1;AF=0.703;AN=2;DP=1863;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:715,0,720:13,14,15,15
chr1	120164966	.	C	T	1620.16	PASS	AC=1;AF=0.703;AN=2;DP=2803;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1140,0,945:20,16,24,19
chr1	120164994	.	C	T,A	960.76	PASS	AC=1,0;AF=0.5,0.029;AN=2;DP=1360;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant27-variant30-variant38-variant44	GT:DP:GQ:SB	0/1:82:99:23,11,23,25
chr1	120165030	.	T	TTCCTCAAGG	2874.57	PASS	AC=1;AF=0.703;AN=2;DP=3438;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:2146,0,1827:27,21,22,29
chr1	120165040	.	T	C	2785.81	PASS	AC=1;AF=0.703;AN=2;DP=3581;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,59:108:99:2187,0,1862:26,23,26,33
chr1	120165125	.	G	A	2672.06	PASS	AC=1;AF=0.655;AN=2;DP=3569;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,63:135:99:2335,0,2779:38,34,31,32
chr1	120165135	.	G	T	2515.25	PASS	AC=1;AF=0.703;AN=2;DP=4629;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,63:138:99:2352,0,2855:38,37,33,30
chr1	120165187	.	G	A	1680.07	PASS	AC=1;AF=0.703;AN=2;DP=4989;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,67:143:99:1608,0,1782:38,38,37,30
chr1	120165826	.	C	T	5913.02	PASS	AC=1;AF=0.703;AN=2;DP=15632;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:276,278:554:99:6347,0,6319:123,153,116,162
chr1	120166681	.	G	A	1099.83	PASS	AC=1;AF=0.618;AN=2;DP=5780;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,81:157:99:1982,0,1887:40,36,42,39
chr1	120166934	.	T	C	238.54	PASS	AC=1;AF=0.708;AN=2;DP=350;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:159,0,146:2,4,1,5
chr1	120254506	.	A	G	470.4	PASS	AC=1;AF=0.703;AN=2;DP=2345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:919,0,936:23,12,23,14
chr1	120254545	.	G	C	720.98	PASS	AC=1;AF=0.705;AN=2;DP=3154;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1188,0,923:24,14,27,22
chr1	120262112	.	G	A	822.74	PASS	AC=1;AF=0.5;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant15-variant18-variant20-variant24-variant27-variant29-variant31-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:497,0,673:17,0,13,1
chr1	120262848	.	G	T	3605.86	PASS	AC=1;AF=0.5;AN=2;DP=2958;MQ=60;set=variant-variant3-variant15-variant18-variant20-variant24-variant27-variant29-variant31-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,147:277:99:3867,0,3456:72,58,86,61
chr1	120263015	.	C	A	3714.47	PASS	AC=1;AF=0.5;AN=2;DP=1327;MQ=60;set=variant3-variant5-variant9-variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:141,118:259:99:3241,0,3663:55,86,39,79
chr1	120267431	.	G	A	1669.97	PASS	AC=1;AF=0.5;AN=2;DP=1290;MQ=60;set=variant3-variant15-variant18-variant20-variant24-variant27-variant29-variant31-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,55:134:99:1285,0,1939:42,37,32,23
chr1	120267505	.	C	G	1559.47	PASS	AC=1;AF=0.589;AN=2;DP=3418;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant25-variant26-variant27-variant28-variant30-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,75:141:99:1814,0,1555:30,36,29,46
chr1	120267597	.	GC	G	1097.51	PASS	AC=1;AF=0.589;AN=2;DP=1667;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant25-variant26-variant27-variant28-variant30-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:692,0,1031:10,22,7,16
chr1	120280060	.	C	T	153.85	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.177;QD=10.26;ReadPosRankSum=0.648;SOR=0.818;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:182,0,184:2,7,1,5
chr1	120285546	.	G	A	2743.54	PASS	AC=2;AF=0.845;AN=2;DP=4529;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3595,350,0:0,0,64,53
chr1	120286941	.	G	A,C	509.8	PASS	AC=0,1;AF=0.24,0.3;AN=2;DP=562;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:26:99:2,9,3,12
chr1	120293352	.	T	C	1211.67	PASS	AC=1;AF=0.526;AN=2;DP=2057;MQ=60;set=variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,39:99:99:930,0,1469:40,20,23,16
chr1	120293367	.	T	C	3991.38	PASS	AC=2;AF=0.833;AN=2;DP=5835;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:4220,356,0:0,0,74,45
chr1	120293568	.	G	A	807.42	PASS	AC=1;AF=0.526;AN=2;DP=1259;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:1018,0,1309:17,28,16,23
chr1	120293748	.	T	G	295.68	PASS	AC=2;AF=0.872;AN=2;DP=516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:631,57,0:0,0,5,14
chr1	120296033	.	AACAC	A,AACACAC,AAC,AACACACAC	98.57	PASS	AC=0,0,2,0;AF=0.107,0.196,0.482,0.018;AN=2;DP=380;FS=0;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant44	GT:DP:GQ:SB	3/3:8:24:0,0,1,7
chr1	120336785	.	C	T	2189.46	PASS	AC=1;AF=0.786;AN=2;DP=3284;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,52:95:99:1440,0,1073:26,17,29,23
chr1	120336876	.	T	G	1494.09	PASS	AC=1;AF=0.688;AN=2;DP=2483;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,50:117:99:1234,0,1449:32,35,23,27
chr1	120337384	.	T	C	665.91	PASS	AC=1;AF=0.688;AN=2;DP=714;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:418,0,535:6,14,5,13
chr1	120337403	.	A	G	440.92	PASS	AC=1;AF=0.688;AN=2;DP=497;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:256,0,486:4,12,2,8
chr1	120341256	.	G	A	963.51	PASS	AC=1;AF=0.5;AN=2;DP=500;MQ=60;set=variant12-variant14-variant15-variant22-variant30	GT:AD:DP:GQ:PL:SB	0/1:68,60:128:99:1616,0,1780:26,42,19,41
chr1	120344044	.	G	A	1105.29	PASS	AC=1;AF=0.648;AN=2;DP=2783;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,71:134:99:1667,0,1680:30,33,32,39
chr1	120344091	.	C	G	357.44	PASS	AC=1;AF=0.654;AN=2;DP=2173;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,44:107:99:1026,0,1650:30,33,20,24
chr1	120344105	.	G	A	963.22	PASS	AC=1;AF=0.757;AN=2;DP=3027;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:1081,0,1508:29,29,20,23
chr1	120344134	.	T	C	821.04	PASS	AC=1;AF=0.757;AN=2;DP=2835;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1109,0,1266:23,27,16,25
chr1	120344146	.	A	G	684.73	PASS	AC=1;AF=0.757;AN=2;DP=2750;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1056,0,1269:24,25,16,26
chr1	120344239	.	T	A	328.51	PASS	AC=1;AF=0.654;AN=2;DP=1759;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,43:81:99:1022,0,1067:17,21,18,25
chr1	120344398	.	C	T	430.57	PASS	AC=1;AF=0.66;AN=2;DP=1221;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,42:67:99:980,0,660:10,15,23,19
chr1	120344415	.	C	G	587.26	PASS	AC=1;AF=0.667;AN=2;DP=1585;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,47:73:99:1070,0,699:11,15,26,21
chr1	120344900	.	G	A	832.99	PASS	AC=1;AF=0.672;AN=2;DP=1275;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,24:56:99:584,0,828:16,16,12,12
chr1	120344936	.	G	C	228.83	PASS	AC=1;AF=0.757;AN=2;DP=1627;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,23:57:99:600,0,828:18,16,16,7
chr1	120378678	.	C	T	3315.95	PASS	AC=2;AF=0.784;AN=2;DP=5623;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3761,377,0:0,0,73,53
chr1	120380008	.	T	A	1340.87	PASS	AC=2;AF=0.784;AN=2;DP=2229;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1681,168,0:0,0,22,34
chr1	120384205	.	A	G	1874.33	PASS	AC=2;AF=0.795;AN=2;DP=5089;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4671,458,0:0,0,65,88
chr1	120387120	.	G	A	2242.92	PASS	AC=2;AF=0.658;AN=2;DP=2724;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3075,273,0:0,0,26,65
chr1	120390071	.	T	C	717.87	PASS	AC=2;AF=0.818;AN=2;DP=947;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:500,45,0:0,0,7,8
chr1	120437718	.	G	A	2072.63	PASS	AC=1;AF=0.5;AN=2;DP=2983;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,100:184:99:2510,0,2118:37,47,51,49
chr1	120437884	.	A	G	1988.12	PASS	AC=1;AF=0.5;AN=2;DP=2085;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:85,83:168:99:2369,0,2233:50,35,43,40
chr1	120439109	.	G	C	484.59	PASS	AC=1;AF=0.5;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:493,0,477:4,12,7,13
chr1	120455310	.	A	G	2708.58	PASS	AC=1;AF=0.5;AN=2;DP=2757;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:137,134:271:99:3389,0,3774:77,60,79,55
chr1	120455441	.	A	G	2314.6	PASS	AC=1;AF=0.5;AN=2;DP=3858;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:172,102:274:99:2538,0,4232:79,93,41,61
chr1	120455586	.	T	C	794.75	PASS	AC=1;AF=0.5;AN=2;DP=904;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1301,0,1272:10,32,14,29
chr1	120456563	.	G	T	504.29	PASS	AC=1;AF=0.5;AN=2;DP=436;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:258,0,746:13,13,8,6
chr1	120458004	.	A	T	1488.24	PASS	AC=1;AF=0.5;AN=2;DP=1116;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:32,58:90:99:1591,0,773:13,19,26,32
chr1	120459433	.	G	A	352.79	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant36	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:381,0,324:1,9,2,10
chr1	120461253	.	C	T	850.44	PASS	AC=1;AF=0.5;AN=2;DP=818;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:43,44:87:99:1139,0,1200:12,31,12,32
chr1	120461944	.	A	G	97.98	PASS	AC=1;AF=0.5;AN=2;DP=425;FractionInformativeReads=1;MQ=60;set=filterInvariant11-variant12-filterInvariant15-variant22-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,12:90:99:120,0,2217:51,27,4,8
chr1	120461956	.	A	T	154.32	PASS	AC=1;AF=0.5;AN=2;DP=1821;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,14:108:99:389,0,6344:60,34,6,8
chr1	120461959	.	T	G	232.28	PASS	AC=1;AF=0.5;AN=2;DP=1900;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,16:110:99:428,0,6383:60,34,7,9
chr1	120461962	.	C	A	313.25	PASS	AC=1;AF=0.5;AN=2;DP=1972;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,17:115:99:458,0,6548:62,36,8,9
chr1	120461965	.	T	A	310.24	PASS	AC=1;AF=0.5;AN=2;DP=2026;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,18:118:99:494,0,6629:64,36,8,10
chr1	120461974	.	G	A	304.22	PASS	AC=1;AF=0.5;AN=2;DP=2215;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,23:127:99:638,0,6907:65,39,10,13
chr1	120461977	.	T	A	336.43	PASS	AC=1;AF=0.5;AN=2;DP=2268;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:107,23:130:99:656,0,6793:64,43,10,13
chr1	120461980	.	A	G	368.49	PASS	AC=1;AF=0.5;AN=2;DP=2308;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,24:133:99:656,0,6793:64,45,10,14
chr1	120462019	.	T	A	522.09	PASS	AC=1;AF=0.5;AN=2;DP=6309;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:140,53:193:99:1757,0,7307:76,64,29,24
chr1	120462031	.	A	G	1125.65	PASS	AC=1;AF=0.5;AN=2;DP=6615;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:141,56:197:99:1918,0,7525:74,67,30,26
chr1	120462034	.	C	T	1119.64	PASS	AC=1;AF=0.5;AN=2;DP=6660;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:138,56:194:99:1957,0,7605:73,65,30,26
chr1	120462040	.	A	G	1117.09	PASS	AC=1;AF=0.5;AN=2;DP=6700;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:134,57:191:99:1978,0,7311:67,67,30,27
chr1	120462058	.	G	A	556.42	PASS	AC=1;AF=0.5;AN=2;DP=6699;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:144,59:203:99:1999,0,7314:67,77,31,28
chr1	120462093	.	G	T	1081.26	PASS	AC=1;AF=0.5;AN=2;DP=6070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:129,54:183:99:1908,0,6694:60,69,23,31
chr1	120462094	.	G	A	1165.24	PASS	AC=1;AF=0.5;AN=2;DP=6021;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:130,54:184:99:1902,0,6778:61,69,23,31
chr1	120462103	.	G	T	1125.65	PASS	AC=1;AF=0.5;AN=2;DP=5822;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,54:175:99:1975,0,6420:56,65,22,32
chr1	120462109	.	G	A	1131.67	PASS	AC=1;AF=0.5;AN=2;DP=5689;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,51:172:99:1942,0,6195:53,68,20,31
chr1	120462118	.	A	G	972.74	PASS	AC=1;AF=0.5;AN=2;DP=5471;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,49:171:99:1720,0,6200:53,69,19,30
chr1	120462136	.	T	C	897.79	PASS	AC=1;AF=0.5;AN=2;DP=5089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:119,39:158:99:1360,0,5623:54,65,13,26
chr1	120462148	.	A	G	639.83	PASS	AC=1;AF=0.5;AN=2;DP=4611;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:106,36:142:99:1219,0,4809:46,60,11,25
chr1	120462166	.	A	G	315.95	PASS	AC=1;AF=0.5;AN=2;DP=4012;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:108,31:139:99:1013,0,4523:50,58,10,21
chr1	120462181	.	A	G	256.06	PASS	AC=1;AF=0.5;AN=2;DP=3577;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-variant33-filterInvariant34-variant36-filterInvariant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:103,24:127:99:734,0,4334:47,56,6,18
chr1	120462184	.	C	T	223.1	PASS	AC=1;AF=0.5;AN=2;DP=3458;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant36-filterInvariant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,24:126:99:689,0,4339:46,56,6,18
chr1	120462186	.	A	G	223.1	PASS	AC=1;AF=0.5;AN=2;DP=3435;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:102,23:125:99:692,0,4297:48,54,6,17
chr1	120463230	.	C	T	157.56	PASS	AC=1;AF=0.5;AN=2;DP=190;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:298,0,148:1,4,0,8
chr1	120464165	.	C	T	259.36	PASS	AC=1;AF=0.5;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:846,0,622:17,8,22,6
chr1	120466108	.	G	A	397.38	PASS	AC=1;AF=0.5;AN=2;DP=462;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:305,0,780:19,2,9,1
chr1	120466442	.	G	A	102.07	PASS	AC=1;AF=0.5;AN=2;DP=4079;FractionInformativeReads=1;set=filterInvariant2-variant3-filterInvariant4-filterInvariant5-variant7-filterInvariant8-filterInvariant9-variant10-variant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-variant20-variant23-filterInvariant24-filterInvariant27-filterInvariant31-variant32-filterInvariant37-filterInvariant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:171,13:184:64:64,0,7264:80,91,6,7
chr1	120466448	.	T	C	96.05	PASS	AC=1;AF=0.5;AN=2;DP=4650;FractionInformativeReads=1;set=filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-variant20-filterInvariant21-variant23-filterInvariant24-variant27-filterInvariant31-variant32-filterInvariant37-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:172,15:187:91:91,0,7471:82,90,8,7
chr1	120466457	.	T	G	183.04	PASS	AC=1;AF=0.5;AN=2;DP=5297;FractionInformativeReads=1;set=filterInvariant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant27-filterInvariant31-variant32-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:168,16:184:99:145,0,7300:83,85,9,7
chr1	120466462	.	T	G	174.01	PASS	AC=1;AF=0.5;AN=2;DP=5287;FractionInformativeReads=1;set=filterInvariant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant27-filterInvariant31-variant32-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:170,17:187:99:187,0,7297:88,82,10,7
chr1	120466463	.	C	G	177.02	PASS	AC=1;AF=0.5;AN=2;DP=5305;FractionInformativeReads=1;set=filterInvariant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant27-filterInvariant31-variant32-filterInvariant37-filterInvariant38-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:171,17:188:99:178,0,7423:88,83,10,7
chr1	120466465	.	A	G	219.01	PASS	AC=1;AF=0.5;AN=2;DP=5934;FractionInformativeReads=1;set=filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant27-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:173,17:190:99:304,0,7414:91,82,10,7
chr1	120466466	.	T	C	222.02	PASS	AC=1;AF=0.5;AN=2;DP=5950;FractionInformativeReads=1;set=filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-variant27-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:174,17:191:99:307,0,7372:92,82,10,7
chr1	120466475	.	A	G	87.79	PASS	AC=1;AF=0.5;AN=2;DP=6284;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant27-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-variant37-filterInvariant38-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:172,20:192:99:343,0,7453:93,79,10,10
chr1	120466484	.	A	G	92.52	PASS	AC=1;AF=0.5;AN=2;DP=6588;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant27-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-variant37-filterInvariant38-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:168,22:190:99:380,0,7190:88,80,11,11
chr1	120466487	.	T	C	95.52	PASS	AC=1;AF=0.5;AN=2;DP=6393;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant27-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-variant37-filterInvariant38-variant39-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:170,22:192:99:386,0,7086:91,79,11,11
chr1	120466502	.	A	T	281.52	PASS	AC=1;AF=0.5;AN=2;DP=7234;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant27-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:189,28:217:99:491,0,7813:101,88,14,14
chr1	120466511	.	A	C	303.99	PASS	AC=1;AF=0.5;AN=2;DP=7555;MQ=60;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-filterInvariant25-variant27-filterInvariant28-filterInvariant31-variant32-filterInvariant33-filterInvariant34-variant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:195,28:223:99:485,0,7797:107,88,14,14
chr1	120466547	.	A	G	411.68	PASS	AC=1;AF=0.5;AN=2;DP=8042;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:199,31:230:99:679,0,8284:105,94,15,16
chr1	120466548	.	C	G	408.67	PASS	AC=1;AF=0.5;AN=2;DP=8036;FractionInformativeReads=1;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:199,30:229:99:723,0,8278:105,94,14,16
chr1	120466556	.	C	T	406.14	PASS	AC=1;AF=0.5;AN=2;DP=7768;FractionInformativeReads=1;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:195,33:228:99:706,0,8167:102,93,16,17
chr1	120467829	.	A	G	94.42	PASS	AC=1;AF=0.5;AN=2;DP=897;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant20-variant21-variant22-variant24-filterInvariant25-variant31-filterInvariant32-variant33-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:30,4:34:75:75,0,2337:23,7,4,0
chr1	120467832	.	TTA	T	52.43	PASS	AC=1;AF=0.5;AN=2;DP=941;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant20-variant21-variant22-variant24-filterInvariant25-variant31-filterInvariant33-filterInvariant37-filterInvariant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:33,4:37:99:108,0,2550:23,10,4,0
chr1	120467835	.	G	GGA	55.44	PASS	AC=1;AF=0.5;AN=2;DP=940;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant20-variant21-variant22-variant24-filterInvariant25-variant31-filterInvariant37-filterInvariant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:32,5:37:99:111,0,2528:22,10,5,0
chr1	120467838	.	T	C	61.48	PASS	AC=1;AF=0.5;AN=2;DP=979;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant24-filterInvariant25-variant30-variant31-filterInvariant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:33,6:39:99:150,0,2557:23,10,6,0
chr1	120467922	.	C	T	356.56	PASS	AC=1;AF=0.5;AN=2;DP=4119;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant20-filterInvariant22-filterInvariant23-variant24-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-filterInvariant38-filterInvariant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:120,6:126:99:215,0,8184:76,44,6,0
chr1	120467933	.	T	G	280.05	PASS	AC=1;AF=0.5;AN=2;DP=5045;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant20-variant22-variant23-variant24-filterInvariant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:133,17:150:99:306,0,9063:79,54,10,7
chr1	120467942	.	G	A	252.97	PASS	AC=1;AF=0.5;AN=2;DP=5411;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-filterInvariant18-variant20-variant22-variant23-variant24-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:143,19:162:99:396,0,9629:83,60,12,7
chr1	120467947	.	C	T	205	PASS	AC=1;AF=0.5;AN=2;DP=5583;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-filterInvariant18-variant20-variant22-variant23-variant24-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:148,20:168:99:390,0,9651:86,62,13,7
chr1	120467978	.	G	T	360.25	PASS	AC=1;AF=0.5;AN=2;DP=6863;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:175,16:191:99:142,0,7685:100,75,8,8
chr1	120467979	.	A	G	357.26	PASS	AC=1;AF=0.5;AN=2;DP=6890;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:175,16:191:99:142,0,7685:100,75,8,8
chr1	120467981	.	C	A	338.89	PASS	AC=1;AF=0.5;AN=2;DP=6933;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:176,16:192:99:127,0,7894:101,75,8,8
chr1	120471424	.	C	T	330.65	PASS	AC=2;AF=1;AN=2;DP=318;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,5,1
chr1	120471857	.	C	T	1334.92	PASS	AC=1;AF=0.5;AN=2;DP=1598;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:75,79:154:99:2016,0,1903:39,36,37,42
chr1	120477998	.	C	A	988.15	PASS	AC=1;AF=0.5;AN=2;DP=1378;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,38:102:99:878,0,1748:40,24,25,13
chr1	120478285	.	T	C	2133.06	PASS	AC=1;AF=0.784;AN=2;DP=2680;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,34:81:99:857,0,1191:19,28,13,21
chr1	120480394	.	T	C	458.54	PASS	AC=2;AF=0.989;AN=2;DP=552;MQ=60;MQRankSum=-1.109;ReadPosRankSum=0.471;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:474,33,0:0,0,9,2
chr1	120480709	.	C	T	266.21	PASS	AC=1;AF=0.5;AN=2;DP=265;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:214,0,329:2,9,1,6
chr1	120484421	.	G	A	438.67	PASS	AC=1;AF=0.5;AN=2;DP=676;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:241,0,930:9,20,5,7
chr1	120496119	.	A	T	2135.4	PASS	AC=1;AF=0.5;AN=2;DP=1245;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:66,57:123:99:2200,0,3545:41,25,38,19
chr1	120496127	.	A	C	2150.12	PASS	AC=1;AF=0.5;AN=2;DP=1368;MQ=60;set=variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:71,59:130:99:2198,0,3580:43,28,39,20
chr1	120505996	.	G	C	1197.82	PASS	AC=1;AF=0.795;AN=2;DP=1366;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:367,0,576:14,3,10,3
chr1	120506108	.	G	A	1291.45	PASS	AC=1;AF=0.5;AN=2;DP=1560;set=variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:50,78:128:99:2059,0,1151:30,20,47,31
chr1	120512104	.	T	C	792.38	PASS	AC=2;AF=0.989;AN=2;DP=1751;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2146,165,0:0,0,47,8
chr1	120529750	.	A	C	663.04	PASS	AC=1;AF=0.5;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:698,0,500:9,12,11,15
chr1	120539331	.	C	T	3355.88	PASS	AC=1;AF=0.5;AN=2;DP=13284;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:201,234:435:99:5354,0,4659:106,95,120,114
chr1	120539530	.	G	C,T	72.7	DRAGENHardSNP	AC=0,1;AF=0.333,0.167;AN=2;DP=212;FractionInformativeReads=1;set=FilteredInAll	GT:DP:GQ:SB	0/2:78:67:29,40,0,9
chr1	120539543	.	C	A	118.04	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=71;FS=17.28;FractionInformativeReads=1;MQ=49.8;MQRankSum=-4.41;QD=1.66;ReadPosRankSum=0.718;SOR=3.981;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,8:71:99:146,0,3691:28,35,0,8
chr1	120539544	.	A	T	118.04	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=71;FS=17.28;FractionInformativeReads=1;MQ=49.8;MQRankSum=-4.392;QD=1.66;ReadPosRankSum=1.064;SOR=3.981;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,8:71:99:146,0,3691:28,35,0,8
chr1	120572547	.	T	C	100.77	PASS	AC=1;AF=0.524;AN=2;DP=120;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant15-variant21-variant22-filterInvariant24-variant25-variant26-variant28-variant29-variant31-variant35-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:99,0,132:4,0,3,0
chr1	120572572	.	C	T	181.74	PASS	AC=1;AF=0.543;AN=2;DP=159;FS=0;FractionInformativeReads=1;set=variant-variant4-variant5-variant7-variant8-variant9-variant13-filterInvariant14-variant15-variant21-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:128,0,130:4,0,4,0
chr1	120611496	.	C	A	223.68	PASS	AC=1;AF=0.5;AN=2;DP=3895;set=filterInvariant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-filterInvariant21-filterInvariant22-variant25-variant26-filterInvariant27-variant28-variant29-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-filterInvariant39-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:89,25:114:99:723,0,2497:46,43,4,21
chr1	120611498	.	G	C	223.68	PASS	AC=1;AF=0.5;AN=2;DP=3748;set=filterInvariant-filterInvariant2-variant4-variant5-filterInvariant6-filterInvariant7-variant8-variant11-filterInvariant12-variant14-variant15-filterInvariant18-filterInvariant21-filterInvariant22-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant32-filterInvariant33-variant34-variant35-variant36-filterInvariant39-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:94,17:111:99:256,0,4218:45,49,3,14
chr1	120611554	.	T	C	379.97	PASS	AC=1;AF=0.5;AN=2;DP=10721;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:168,55:223:99:1845,0,7051:94,74,30,25
chr1	120611555	.	T	G	379.97	PASS	AC=1;AF=0.5;AN=2;DP=10554;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:168,57:225:99:1845,0,7051:94,74,31,26
chr1	120611715	.	A	G	2128.3	PASS	AC=1;AF=0.5;AN=2;DP=11031;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,207:303:99:4883,0,1985:42,54,105,102
chr1	120611758	.	G	A	2404.29	PASS	AC=1;AF=0.5;AN=2;DP=9977;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,143:314:99:3285,0,4063:83,88,68,75
chr1	120611830	.	G	A	2778.25	PASS	AC=1;AF=0.5;AN=2;DP=9595;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,137:294:99:3248,0,3992:81,76,73,64
chr1	120611876	.	C	T	3138.46	PASS	AC=1;AF=0.5;AN=2;DP=11649;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:184,176:360:99:4041,0,4447:104,80,101,75
chr1	120611964	.	G	C	4194.6	PASS	AC=1;AF=0.5;AN=2;DP=17085;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-filterInvariant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:261,265:526:99:6289,0,6034:142,119,145,120
chr1	120612006	.	G	A,C	3792.33	PASS	AC=1,0;AF=0.474,0.026;AN=2;DP=16229;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:539:99:146,133,130,130
chr1	120612040	.	T	TCCTCCGCCG,TCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG,TCCTCCTCCG,TCCGCCGCCG,TCCGCCGCCGCCGCCGCCGCCGCCG,TCCTCCGCCGCCG,TCCGCCGCCGCCG	2304.84	PASS	AC=1,0,0,0,0,0,0;AF=0.286,0.024,0.071,0.06,0.012,0.024,0.024;AN=2;DP=16558;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:422:99:139,131,66,86
chr1	120612154	.	C	G	1568.54	PASS	AC=1;AF=0.5;AN=2;DP=12396;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:274,70:344:99:2061,0,11154:119,155,28,42
chr1	120612163	.	C	A	1581.53	PASS	AC=1;AF=0.5;AN=2;DP=12075;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:263,68:331:99:2043,0,10765:118,145,27,41
chr1	120612168	.	C	T	647.01	PASS	AC=1;AF=0.5;AN=2;DP=9620;set=variant-filterInvariant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-filterInvariant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant32-variant33-variant35-variant36-filterInvariant37-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:241,81:322:99:1326,0,7126:110,131,30,51
chr1	120612265	.	A	G	278.36	PASS	AC=1;AF=0.5;AN=2;DP=4799;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,19:133:99:321,0,2834:46,68,0,19
chr1	120612297	.	C	A	522.45	PASS	AC=1;AF=0.5;AN=2;DP=760;set=variant7-variant9-variant11-variant12-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:36,47:83:99:1012,0,841:12,24,19,28
chr1	120904791	.	A	G	1586.55	PASS	AC=2;AF=0.888;AN=2;DP=2557;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2328,183,0:0,0,38,23
chr1	120925663	.	C	T	1850.42	PASS	AC=2;AF=1;AN=2;DP=1944;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1342,114,0:0,0,9,29
chr1	120927081	.	C	T	64.76	PASS	AC=2;AF=0.691;AN=2;DP=511;set=filterInvariant-variant2-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-variant28-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,22:24:22:543,22,0:1,1,13,9
chr1	121115761	.	T	G	147.58	PASS	AC=1;AF=0.5;AN=2;DP=1749;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant23-variant24-filterInvariant25-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:44,14:58:99:260,0,1593:43,1,12,2
chr1	121115786	.	C	A	294.44	PASS	AC=1;AF=0.5;AN=2;DP=2916;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:62,27:89:99:622,0,1859:51,11,26,1
chr1	121116647	.	T	A	505.67	PASS	AC=1;AF=0.5;AN=2;DP=7628;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant35-filterInvariant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,103:260:99:1836,0,3865:102,55,59,44
chr1	121116678	.	C	T	2763.67	PASS	AC=1;AF=0.531;AN=2;DP=8232;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:229,100:329:99:3516,0,9893:124,105,57,43
chr1	121116688	.	A	G	2955.37	PASS	AC=1;AF=0.529;AN=2;DP=9195;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:244,107:351:99:3691,0,10191:128,116,63,44
chr1	121116733	.	A	G	80.24	PASS	AC=1;AF=0.5;AN=2;DP=9826;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-filterInvariant23-variant24-variant25-variant27-filterInvariant28-variant32-variant33-variant35-variant38-variant39-filterInvariant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:300,97:397:99:1487,0,7929:161,139,39,58
chr1	121116933	.	T	C	1061.74	PASS	AC=1;AF=0.676;AN=2;DP=1807;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,26:64:99:682,0,1212:7,31,6,20
chr1	121116953	.	A	G	984.23	PASS	AC=1;AF=0.671;AN=2;DP=1222;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,14:48:99:421,0,1103:5,29,0,14
chr1	142542707	.	TGGAGTGGAGTGG	T	73.27	PASS	AC=1;AF=0.5;AN=2;DP=565;set=variant2-variant4-variant5-variant6-variant9-variant13-variant15-filterInvariant16-variant18-variant21-variant24-variant25-filterInvariant27-variant32-variant37-variant39-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:29,6:35:99:146,0,1242:28,1,4,2
chr1	142542721	.	G	T	49.27	PASS	AC=1;AF=0.5;AN=2;DP=622;set=filterInvariant2-variant4-variant5-variant6-variant9-variant13-filterInvariant15-filterInvariant16-variant18-variant21-variant24-variant25-variant32-variant37-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:44,6:50:95:95,0,1955:40,4,4,2
chr1	142542722	.	TGGA	T	73.34	PASS	AC=1;AF=0.5;AN=2;DP=567;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant9-variant13-variant15-filterInvariant16-variant18-variant21-variant24-variant25-filterInvariant27-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,6:40:99:131,0,1452:32,2,4,2
chr1	142542735	.	A	T	61.31	PASS	AC=1;AF=0.5;AN=2;DP=588;set=filterInvariant2-variant4-variant5-variant6-variant9-variant13-variant15-filterInvariant16-variant18-variant21-variant24-variant25-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,6:43:99:122,0,1578:34,3,4,2
chr1	142542743	.	G	A	43.25	PASS	AC=1;AF=0.5;AN=2;DP=643;set=filterInvariant2-variant4-filterInvariant5-variant6-variant9-variant13-filterInvariant15-filterInvariant16-variant18-variant21-variant24-variant25-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,5:49:95:95,0,1955:38,6,4,1
chr1	142542830	.	C	T	854.23	PASS	AC=1;AF=0.5;AN=2;DP=3521;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,48:132:99:945,0,2000:45,39,30,18
chr1	142542921	.	A	G	1087.04	PASS	AC=1;AF=0.5;AN=2;DP=3564;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,51:128:99:1849,0,3014:31,46,23,28
chr1	142542922	.	G	A	1087.04	PASS	AC=1;AF=0.5;AN=2;DP=3522;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,51:128:99:1849,0,3014:31,46,23,28
chr1	142542976	.	T	G	1356.05	PASS	AC=2;AF=0.83;AN=2;DP=2290;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2658,252,0:0,0,26,58
chr1	142667306	.	C	T	202.59	PASS	AC=1;AF=0.5;AN=2;DP=1616;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:466,0,799:18,13,9,9
chr1	142667399	.	A	G	212.86	PASS	AC=1;AF=0.5;AN=2;DP=1369;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:344,0,754:8,19,9,10
chr1	142690739	.	G	A	102.04	PASS	AC=1;AF=0.571;AN=2;DP=114;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant5-variant7-variant9-filterInvariant10-filterInvariant13-filterInvariant14-variant15-variant17-filterInvariant19-filterInvariant20-variant21-filterInvariant23-variant24-variant25-variant26-variant30-variant40-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,259:0,4,0,3
chr1	142690740	.	G	A	102.04	PASS	AC=1;AF=0.571;AN=2;DP=114;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant5-variant7-variant9-filterInvariant10-filterInvariant13-filterInvariant14-variant15-variant17-filterInvariant19-filterInvariant20-variant21-filterInvariant23-variant24-variant25-variant26-variant30-variant40-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,259:0,4,0,3
chr1	142813098	.	T	C	49.04	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1261;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:30,11:41:99:215,0,839:26,4,10,1
chr1	142813130	.	G	A	146.78	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2962;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:72,28:100:99:428,0,1768:53,19,20,8
chr1	142813421	.	C	T	96.94	PASS	AC=1;AF=0.5;AN=2;DP=96;FractionInformativeReads=1;set=variant2-filterInvariant15-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:37,5:42:59:59,0,1298:4,33,1,4
chr1	142824953	.	T	C	163.65	PASS	AC=1;AF=0.5;AN=2;DP=1202;set=variant-variant3-variant4-filterInvariant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-filterInvariant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:593,0,893:24,12,17,4
chr1	142825124	.	T	C	597.79	PASS	AC=1;AF=0.5;AN=2;DP=1127;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant21-variant22-filterInvariant24-variant25-variant26-variant30-variant31-variant32-variant33-variant35-variant36-filterInvariant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,9:32:99:203,0,677:5,18,2,7
chr1	142826178	.	G	A	165.08	PASS	AC=1;AF=0.594;AN=2;DP=478;set=variant-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:86:86,0,208:5,5,3,0
chr1	142826248	.	C	T	144.38	PASS	AC=1;AF=0.5;AN=2;DP=1153;set=variant4-variant5-variant6-filterInvariant8-filterInvariant11-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant30-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:45,14:59:99:312,0,1338:36,9,13,1
chr1	142826355	.	CA	C	2560.03	PASS	AC=1;AF=0.5;AN=2;DP=5351;set=variant3-filterInvariant4-variant6-filterInvariant7-variant8-filterInvariant10-filterInvariant12-variant14-variant15-variant19-variant21-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant37-variant39-filterInvariant40-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:154,53:207:99:1360,0,5110:86,68,28,25
chr1	142826369	.	C	A	2438.06	PASS	AC=1;AF=0.614;AN=2;DP=8960;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,181:219:99:4451,0,416:18,20,99,82
chr1	142826519	.	T	A	1872.91	PASS	AC=2;AF=1;AN=2;DP=1933;FS=0;MQRankSum=0.276;ReadPosRankSum=-0.377;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1488,132,0:0,0,8,36
chr1	143163614	.	T	A	50.97	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;set=variant2-variant5-filterInvariant15-variant17-variant29-variant34	GT:AD:DP:GQ:PL:SB	0/1:19,7:26:66:66,0,470:13,6,4,3
chr1	143163656	.	G	A	39.99	PASS	AC=1;AF=0.5;AN=2;DP=583;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:221,0,493:13,8,8,5
chr1	143163673	.	C	G	45.41	PASS	AC=1;AF=0.5;AN=2;DP=565;set=filterInvariant3-variant4-variant5-variant8-variant9-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-filterInvariant30-variant31-variant32-variant34-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:235,0,445:12,7,7,5
chr1	143163706	.	A	T	166.36	PASS	AC=1;AF=0.5;AN=2;DP=566;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant22-variant24-variant25-filterInvariant27-variant34-variant35-filterInvariant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:441,0,810:12,8,6,6
chr1	143163708	.	C	T	166.36	PASS	AC=1;AF=0.5;AN=2;DP=687;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:441,0,810:12,8,6,6
chr1	143163749	.	A	C	215.6	PASS	AC=1;AF=0.512;AN=2;DP=1244;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:428,0,352:7,6,7,11
chr1	143163772	.	G	C	82.53	PASS	AC=1;AF=0.5;AN=2;DP=386;FractionInformativeReads=1;set=variant5-variant8-variant15-variant17-variant24-variant25-filterInvariant26-variant27-filterInvariant31-filterInvariant32-variant34-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:22,5:27:99:144,0,909:10,12,1,4
chr1	143163775	.	A	G	79.52	PASS	AC=1;AF=0.5;AN=2;DP=360;FractionInformativeReads=1;set=variant5-variant8-variant15-variant17-filterInvariant24-variant25-filterInvariant26-variant27-filterInvariant31-variant34-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:22,5:27:99:144,0,909:10,12,1,4
chr1	143210174	.	C	G	108.5	PASS	AC=1;AF=0.5;AN=2;DP=2307;set=filterInvariant2-variant3-filterInvariant5-filterInvariant8-filterInvariant10-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant17-filterInvariant18-filterInvariant19-variant20-variant22-variant24-variant25-filterInvariant27-variant32-variant35-filterInvariant36-filterInvariant38-filterInvariant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,37:146:99:508,0,3193:47,62,18,19
chr1	143210178	.	T	A	128.69	PASS	AC=1;AF=0.5;AN=2;DP=2331;set=variant-filterInvariant3-filterInvariant4-filterInvariant7-variant9-filterInvariant10-variant11-variant12-filterInvariant15-variant16-variant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant28-filterInvariant29-filterInvariant31-variant38-variant39-filterInvariant40-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:138,13:151:99:110,0,4374:62,76,5,8
chr1	143210199	.	T	C	180.66	PASS	AC=1;AF=0.5;AN=2;DP=2723;set=variant-filterInvariant3-filterInvariant4-filterInvariant6-filterInvariant7-variant9-variant10-variant11-filterInvariant12-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant33-filterInvariant37-variant38-variant39-filterInvariant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,13:158:76:76,0,4139:64,81,5,8
chr1	143210260	.	T	A	242.61	PASS	AC=1;AF=0.5;AN=2;DP=2479;set=variant-variant3-filterInvariant4-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant22-filterInvariant24-filterInvariant26-variant29-variant31-filterInvariant33-filterInvariant35-filterInvariant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,13:126:99:152,0,3237:47,66,5,8
chr1	143210284	.	C	A	214.86	PASS	AC=1;AF=0.5;AN=2;DP=1676;FractionInformativeReads=1;set=variant-filterInvariant3-filterInvariant4-variant6-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant15-variant16-filterInvariant18-filterInvariant20-filterInvariant24-variant29-variant31-filterInvariant33-filterInvariant35-variant37-variant38-filterInvariant39-filterInvariant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,11:105:99:180,0,2869:33,61,4,7
chr1	143210303	.	T	G	217.45	PASS	AC=1;AF=0.5;AN=2;DP=1875;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-filterInvariant21-variant22-variant24-variant25-variant27-filterInvariant29-variant31-variant32-filterInvariant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,21:76:99:618,0,1569:23,32,6,15
chr1	143376703	.	A	T	61.77	PASS	AC=1;AF=0.8;AN=2;DP=90;FS=0;FractionInformativeReads=1;SOR=0.693;set=filterInvariant2-variant8-filterInvariant11-filterInvariant13-filterInvariant15-filterInvariant17-filterInvariant23-filterInvariant26-filterInvariant29-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:81:162,0,81:1,1,2,2
chr1	143376705	.	A	C	61.77	PASS	AC=1;AF=0.8;AN=2;DP=90;FS=0;FractionInformativeReads=1;SOR=0.693;set=filterInvariant2-variant8-filterInvariant11-filterInvariant13-filterInvariant15-filterInvariant17-filterInvariant23-filterInvariant26-filterInvariant29-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:81:162,0,81:1,1,2,2
chr1	143400907	.	A	G	153.92	PASS	AC=2;AF=0.717;AN=2;DP=200;FractionInformativeReads=1;set=filterInvariant2-variant4-variant5-filterInvariant6-variant11-filterInvariant12-variant13-variant14-filterInvariant15-filterInvariant17-variant18-variant20-filterInvariant21-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant33-filterInvariant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:93,9,0:0,0,1,2
chr1	143424027	.	A	C	41.5	PASS	AC=2;AF=0.741;AN=2;DP=147;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant20-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-filterInvariant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:197,15,0:0,0,5,0
chr1	143767235	.	G	A	87.5	PASS	AC=1;AF=0.5;AN=2;DP=76;FractionInformativeReads=1;set=variant8-filterInvariant13-filterInvariant15-variant17-variant36	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:146,0,368:11,2,6,1
chr1	143767254	.	A	G	43.46	PASS	AC=1;AF=0.5;AN=2;DP=403;set=filterInvariant-filterInvariant3-filterInvariant5-filterInvariant7-filterInvariant9-filterInvariant15-filterInvariant16-filterInvariant20-filterInvariant21-variant24-variant26-filterInvariant31-filterInvariant33-variant36-filterInvariant37-filterInvariant40-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,5:24:63:63,0,570:17,2,5,0
chr1	143767312	.	G	T	242.84	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1726;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:43,18:61:99:311,0,1046:40,3,18,0
chr1	143767466	.	G	A	979.91	PASS	AC=1;AF=0.5;AN=2;DP=4535;set=filterInvariant7-variant8-variant13-filterInvariant15-filterInvariant17-variant25-filterInvariant36-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:573,127:700:99:1376,0,13308:302,271,69,58
chr1	143767513	.	A	T	5010.51	PASS	AC=1;AF=0.5;AN=2;DP=27507;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:527,227:754:99:7624,0,20458:225,302,91,136
chr1	143767522	.	A	G	4756.18	PASS	AC=1;AF=0.5;AN=2;DP=26956;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:501,211:712:99:6979,0,20060:211,290,79,132
chr1	143767544	.	T	A	508.56	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1839;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:526,92:618:99:537,0,20308:221,305,33,59
chr1	143767547	.	G	A	3632.87	PASS	AC=1;AF=0.5;AN=2;DP=22221;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:448,161:609:99:4090,0,10713:193,255,56,105
chr1	143767628	.	C	T	352.58	PASS	AC=1;AF=0.5;AN=2;DP=5273;set=filterInvariant2-variant6-filterInvariant7-filterInvariant8-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant22-filterInvariant23-filterInvariant28-variant30-variant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:321,38:359:99:138,0,8707:163,158,6,32
chr1	143767643	.	T	C	749.77	PASS	AC=1;AF=0.5;AN=2;DP=9706;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:295,39:334:99:105,0,7554:154,141,11,28
chr1	144013853	.	T	C	707.65	PASS	AC=1;AF=0.5;AN=2;DP=8614;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,76:239:99:1635,0,3958:96,67,45,31
chr1	144013865	.	T	G	905.04	PASS	AC=1;AF=0.5;AN=2;DP=9730;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:186,81:267:99:1786,0,4755:103,83,49,32
chr1	144014051	.	G	A	675.35	PASS	AC=1;AF=0.5;AN=2;DP=5824;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,54:160:99:1265,0,3001:38,68,18,36
chr1	144014068	.	T	C	972.73	PASS	AC=1;AF=0.5;AN=2;DP=4700;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,96:124:99:2824,0,594:9,19,29,67
chr1	144052641	.	CAAAAA	CAAA,CAA,CA,C,CAAAAAA,CAAAA	221.22	PASS	AC=0,0,1,0,0,0;AF=0.097,0.21,0.113,0.032,0.016,0.048;AN=2;DP=1647;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-filterInvariant12-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:47:99:20,11,12,4
chr1	144052761	.	G	T	659.34	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=2.288;FractionInformativeReads=1;MQ=48.84;MQRankSum=-1.808;QD=3.66;ReadPosRankSum=0.944;SOR=0.492;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:140,40:180:99:688,0,3383:62,78,20,20
chr1	144193482	.	G	A	110.72	PASS	AC=1;AF=0.55;AN=2;DP=122;FractionInformativeReads=1;set=variant4-variant11-variant15-variant22-variant28-filterInvariant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:106,0,241:6,4,4,2
chr1	144617992	.	T	A	113.81	PASS	AC=1;AF=0.5;AN=2;DP=1683;set=variant2-variant4-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-filterInvariant34-variant35-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,8:77:99:162,0,3429:49,20,6,2
chr1	144617994	.	A	G	95.79	PASS	AC=1;AF=0.5;AN=2;DP=1909;set=filterInvariant2-variant4-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant34-variant35-filterInvariant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,9:78:99:184,0,3426:49,20,7,2
chr1	144618009	.	A	G	969.59	PASS	AC=1;AF=0.5;AN=2;DP=4356;set=variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,41:130:99:913,0,2219:57,32,33,8
chr1	144618144	.	A	G	2855.35	PASS	AC=2;AF=0.852;AN=2;DP=11016;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,310:310:99:8227,927,0:0,0,140,170
chr1	144618201	.	T	C	448.97	PASS	AC=1;AF=0.5;AN=2;DP=3238;set=filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant15-variant16-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant40-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:84,31:115:99:468,0,2217:29,55,0,31
chr1	144676646	.	T	C	185.66	PASS	AC=1;AF=0.6;AN=2;DP=2074;set=filterInvariant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant17-variant18-variant19-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant29-variant30-filterInvariant31-variant33-filterInvariant35-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,20:121:99:136,0,2632:63,38,6,14
chr1	144811810	.	A	G	169.34	PASS	AC=1;AF=0.5;AN=2;DP=855;set=variant2-variant4-variant6-filterInvariant8-variant9-variant11-variant12-variant14-filterInvariant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant31-variant33-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,5:29:74:74,0,817:24,0,5,0
chr1	144811823	.	A	C	108.7	PASS	AC=1;AF=0.5;AN=2;DP=1585;FractionInformativeReads=1;set=filterInvariant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant33-filterInvariant34-variant35-filterInvariant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,6:35:99:198,0,1229:29,0,6,0
chr1	144811827	.	G	A	171.19	PASS	AC=1;AF=0.5;AN=2;DP=1721;set=filterInvariant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant33-filterInvariant34-variant35-filterInvariant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,10:40:99:294,0,1220:30,0,10,0
chr1	144811836	.	G	A	147.19	PASS	AC=2;AF=0.881;AN=2;DP=2471;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1768,132,0:0,0,42,0
chr1	144811924	.	T	G	4451.43	PASS	AC=2;AF=0.989;AN=2;DP=6738;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5227,533,0:0,0,95,83
chr1	144811969	.	A	T	640.75	PASS	AC=1;AF=0.5;AN=2;DP=6083;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,43:185:99:609,0,3584:64,78,20,23
chr1	144811998	.	C	G	617.31	PASS	AC=1;AF=0.5;AN=2;DP=4345;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,31:136:99:523,0,2933:41,64,9,22
chr1	144812018	.	G	A	520.22	PASS	AC=1;AF=0.5;AN=2;DP=3063;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,13:96:99:275,0,3429:30,53,1,12
chr1	144812019	.	A	C	520.22	PASS	AC=1;AF=0.5;AN=2;DP=2994;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,12:93:99:275,0,3429:29,52,0,12
chr1	144813718	.	A	G	794.4	PASS	AC=2;AF=0.726;AN=2;DP=1733;set=variant2-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-variant12-filterInvariant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1502,108,0:0,0,35,1
chr1	144814554	.	A	C	596.66	PASS	AC=1;AF=0.5;AN=2;DP=74;set=variant15-variant28	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:625,0,616:16,3,17,1
chr1	144815953	.	A	G	273.81	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=85;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:284,30,0:0,0,10,0
chr1	144815968	.	G	A	84.77	DRAGENHardSNP	AC=2;AF=0.85;AN=2;DP=123;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:354,36,0:0,0,12,0
chr1	144823289	.	C	A	40.01	DRAGENHardSNP	AC=2;AF=0.75;AN=2;DP=33;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:88,9,0:0,0,2,1
chr1	144823868	.	T	G	36.27	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=28.5;QD=18.13;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:64,6,0:0,0,1,1
chr1	144824666	.	A	C	96.55	PASS	AC=2;AF=0.917;AN=2;DP=107;FractionInformativeReads=1;set=filterInvariant2-filterInvariant15-filterInvariant16-filterInvariant20-filterInvariant23-filterInvariant26-filterInvariant32-filterInvariant35-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:190,18,0:0,0,6,0
chr1	144825577	.	G	A	399.21	PASS	AC=1;AF=0.5;AN=2;DP=2042;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,64:78:99:1818,0,180:10,4,19,45
chr1	144825681	.	T	C	152.49	PASS	AC=1;AF=0.5;AN=2;DP=663;set=variant2-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-filterInvariant26-variant27-variant29-variant30-variant33-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:492,0,245:5,5,3,14
chr1	144825721	.	T	C	44.68	PASS	AC=1;AF=0.5;AN=2;DP=238;set=variant3-filterInvariant5-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant25-filterInvariant26-variant33-filterInvariant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:289,0,228:3,6,2,9
chr1	144826097	.	C	T	146.89	DRAGENHardSNP	AC=1;AF=0.519;AN=2;DP=655;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:262,0,302:9,5,7,7
chr1	144826128	.	T	G	178.12	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=722;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:293,0,298:10,4,7,8
chr1	144828404	.	T	A	402.8	PASS	AC=1;AF=0.5;AN=2;DP=1086;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:507,0,291:7,1,12,3
chr1	144828418	.	C	T	133.15	PASS	AC=1;AF=0.5;AN=2;DP=1362;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:223,0,770:17,3,7,1
chr1	144828454	.	G	C	87.25	PASS	AC=2;AF=0.619;AN=2;DP=2266;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1791,150,0:0,0,43,7
chr1	144828484	.	G	A	112.8	PASS	AC=1;AF=0.5;AN=2;DP=3320;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-variant37-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,10:80:99:147,0,3050:58,12,6,4
chr1	144828497	.	C	T	52.53	PASS	AC=1;AF=0.5;AN=2;DP=3347;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant15-filterInvariant17-filterInvariant19-variant21-filterInvariant22-variant23-filterInvariant25-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant39-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,9:96:97:97,0,3441:70,17,4,5
chr1	144828748	.	C	T	99.26	PASS	AC=1;AF=0.5;AN=2;DP=6264;set=filterInvariant-filterInvariant4-variant5-filterInvariant6-filterInvariant10-filterInvariant11-variant12-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-variant31-variant34-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:247,25:272:99:385,0,10106:103,144,16,9
chr1	144828764	.	G	T	544.19	PASS	AC=1;AF=0.5;AN=2;DP=9929;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:241,30:271:99:567,0,10116:91,150,17,13
chr1	144828765	.	A	T	544.19	PASS	AC=1;AF=0.5;AN=2;DP=9922;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:241,30:271:99:567,0,10116:90,151,17,13
chr1	144828784	.	A	G	226.11	PASS	AC=1;AF=0.5;AN=2;DP=8286;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:194,36:230:99:849,0,8272:62,132,21,15
chr1	144828845	.	A	T	1049.62	PASS	AC=1;AF=0.5;AN=2;DP=3145;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,72:112:99:2590,0,1407:19,21,18,54
chr1	144828857	.	C	G	843.64	PASS	AC=1;AF=0.5;AN=2;DP=2623;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,50:87:99:2159,0,1386:18,19,8,42
chr1	144828910	.	A	T	183.07	PASS	AC=1;AF=0.5;AN=2;DP=1207;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:480,0,279:0,10,7,12
chr1	144852321	.	C	A	91.83	PASS	AC=1;AF=0.5;AN=2;DP=2231;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:632,0,742:14,14,17,12
chr1	144852390	.	C	T	146.07	PASS	AC=1;AF=0.5;AN=2;DP=2786;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,35:69:99:761,0,964:16,18,17,18
chr1	144852476	.	T	C	275.96	PASS	AC=1;AF=0.5;AN=2;DP=1842;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:656,0,614:11,14,11,16
chr1	144852545	.	C	T	331.4	PASS	AC=1;AF=0.5;AN=2;DP=828;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:330,0,433:4,11,5,8
chr1	144854180	.	T	C	2026.92	PASS	AC=1;AF=0.5;AN=2;DP=7056;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:139,46:185:99:992,0,3984:97,42,31,15
chr1	144854245	.	C	T	2201.49	PASS	AC=1;AF=0.5;AN=2;DP=16305;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:291,128:419:99:2621,0,7535:164,127,72,56
chr1	144854277	.	A	G	5887.67	PASS	AC=1;AF=0.511;AN=2;DP=19169;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:199,310:509:99:7503,0,4170:104,95,153,157
chr1	144854351	.	A	C	5707	PASS	AC=1;AF=0.784;AN=2;DP=13823;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:82,286:368:99:9220,0,1243:34,48,116,170
chr1	144854376	.	C	A	1412.48	PASS	AC=1;AF=0.5;AN=2;DP=9024;set=variant-filterInvariant2-variant3-variant4-variant6-variant7-variant8-filterInvariant10-variant11-variant12-variant14-variant15-variant17-filterInvariant18-variant19-filterInvariant21-filterInvariant22-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:239,51:290:99:821,0,8895:86,153,17,34
chr1	144854380	.	T	C	4238.04	PASS	AC=1;AF=0.5;AN=2;DP=10209;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:144,136:280:99:4265,0,4502:52,92,48,88
chr1	144854397	.	T	C	5409.55	PASS	AC=1;AF=0.807;AN=2;DP=7614;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,150:195:99:5958,0,1331:17,28,52,98
chr1	144854412	.	A	C	2069.17	PASS	AC=1;AF=0.5;AN=2;DP=6201;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:83,77:160:99:2237,0,2881:24,59,29,48
chr1	144854454	.	A	C	82.8	PASS	AC=1;AF=0.5;AN=2;DP=3623;set=filterInvariant-variant3-variant4-filterInvariant5-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-filterInvariant18-variant19-variant20-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:2064,0,1666:24,31,24,38
chr1	144854491	.	T	G	1770.3	PASS	AC=1;AF=0.5;AN=2;DP=6105;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,56:145:99:2216,0,3608:43,46,27,29
chr1	144854497	.	A	G	1927.75	PASS	AC=1;AF=0.5;AN=2;DP=6446;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,66:157:99:2330,0,3577:45,46,33,33
chr1	144854528	.	A	G	402.94	PASS	AC=1;AF=0.5;AN=2;DP=7884;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:141,72:213:99:2767,0,5823:72,69,39,33
chr1	144854537	.	T	C	521.18	PASS	AC=1;AF=0.5;AN=2;DP=8319;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,88:231:99:3066,0,5665:71,72,50,38
chr1	144854581	.	T	C	1244.95	PASS	AC=1;AF=0.5;AN=2;DP=9251;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:220,33:253:99:274,0,5893:106,114,15,18
chr1	144854594	.	G	T	1371.64	PASS	AC=1;AF=0.5;AN=2;DP=8984;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:208,31:239:99:651,0,9682:98,110,13,18
chr1	144854597	.	T	C	4504.87	PASS	AC=1;AF=0.5;AN=2;DP=8847;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:110,128:238:99:4970,0,5036:54,56,56,72
chr1	144854598	.	C	T	2548.15	PASS	AC=1;AF=0.5;AN=2;DP=8801;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:143,96:239:99:3548,0,6492:67,76,43,53
chr1	144854730	.	A	G	312.12	PASS	AC=1;AF=0.5;AN=2;DP=1113;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,5:35:99:112,0,1198:1,29,0,5
chr1	144855812	.	T	C	234.82	PASS	AC=1;AF=0.5;AN=2;DP=662;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:158,0,309:8,5,5,3
chr1	144857068	.	A	T	189.98	PASS	AC=1;AF=0.5;AN=2;DP=667;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:252,0,189:1,4,0,7
chr1	144859720	.	G	C	91.72	PASS	AC=2;AF=0.818;AN=2;DP=943;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:764,66,0:0,0,15,7
chr1	144860026	.	G	C	91.69	PASS	AC=1;AF=0.5;AN=2;DP=1359;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:468,0,318:6,7,5,12
chr1	144863207	.	C	T,A	175.23	PASS	AC=1,0;AF=0.453,0.047;AN=2;DP=1763;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant15-variant16-variant17-variant18-variant20-variant22-filterInvariant24-filterInvariant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-filterInvariant36-variant38-variant39-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:66:99:20,15,17,14
chr1	144863208	.	A	G	580.29	PASS	AC=1;AF=0.511;AN=2;DP=2538;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:1175,0,1926:20,15,17,14
chr1	144863505	.	A	G	538.74	PASS	AC=1;AF=0.5;AN=2;DP=4074;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,60:130:99:1368,0,1818:33,37,32,28
chr1	144863613	.	C	T	242.93	PASS	AC=1;AF=0.5;AN=2;DP=1312;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:616,0,575:6,15,8,15
chr1	144864454	.	G	A	112.19	PASS	AC=1;AF=0.5;AN=2;DP=1150;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:596,0,393:2,10,2,15
chr1	144865850	.	G	T	2165.41	PASS	AC=1;AF=0.5;AN=2;DP=8448;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:107,111:218:99:2800,0,2702:46,61,45,66
chr1	144866509	.	G	A	184.38	PASS	AC=1;AF=0.5;AN=2;DP=2643;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:960,0,894:22,12,26,12
chr1	144866643	.	G	A	134.98	PASS	AC=1;AF=0.5;AN=2;DP=8379;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:117,95:212:99:2298,0,2824:59,58,47,48
chr1	144866662	.	T	C	94.6	PASS	AC=1;AF=0.5;AN=2;DP=8117;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,90:204:99:2109,0,2523:54,60,43,47
chr1	144868170	.	C	T	401.66	PASS	AC=1;AF=0.5;AN=2;DP=3593;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:1016,0,1066:12,28,12,27
chr1	144868204	.	A	C	231.51	PASS	AC=1;AF=0.5;AN=2;DP=1849;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:632,0,411:4,11,5,18
chr1	144871738	.	C	A	451.41	PASS	AC=1;AF=0.5;AN=2;DP=2588;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1815,0,2123:26,10,33,15
chr1	144871755	.	A	T	611.68	PASS	AC=1;AF=0.5;AN=2;DP=3227;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,53:93:99:1964,0,2228:28,12,36,17
chr1	144871782	.	A	G	659.76	PASS	AC=1;AF=0.5;AN=2;DP=4281;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1622,0,1451:38,26,36,27
chr1	144871889	.	A	C	1015.34	PASS	AC=1;AF=0.5;AN=2;DP=5859;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:85,73:158:99:1750,0,2117:36,49,33,40
chr1	144873794	.	C	T	1498.53	PASS	AC=1;AF=0.5;AN=2;DP=8324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:135,86:221:99:2032,0,3605:81,54,56,30
chr1	144873818	.	A	G	2010.33	PASS	AC=1;AF=0.5;AN=2;DP=10772;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:179,123:302:99:2956,0,4680:106,73,79,44
chr1	144873840	.	A	G	2374.63	PASS	AC=1;AF=0.5;AN=2;DP=12461;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:206,139:345:99:3364,0,5319:123,83,86,53
chr1	144873887	.	C	T	2787.42	PASS	AC=1;AF=0.5;AN=2;DP=15002;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:215,184:399:99:4103,0,5643:115,100,105,79
chr1	144873962	.	CT	C	1440.02	PASS	AC=1;AF=0.5;AN=2;DP=12643;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,196:412:99:6637,0,7327:93,123,86,110
chr1	144874038	.	T	C	2554.08	PASS	AC=1;AF=0.5;AN=2;DP=10333;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:152,127:279:99:3288,0,3833:53,99,43,84
chr1	144874070	.	C	T	1978.37	PASS	AC=1;AF=0.5;AN=2;DP=6686;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:103,86:189:99:2102,0,2575:39,64,29,57
chr1	144874088	.	G	C	1643.95	PASS	AC=1;AF=0.5;AN=2;DP=4965;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,71:145:99:1868,0,1985:24,50,23,48
chr1	144874641	.	G	C	355.59	PASS	AC=1;AF=0.5;AN=2;DP=5382;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:89,60:149:99:1442,0,2323:53,36,37,23
chr1	144874760	.	T	C	1179.62	PASS	AC=1;AF=0.5;AN=2;DP=10355;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:130,98:228:99:2234,0,3336:55,75,46,52
chr1	144875799	.	G	A	1527.03	PASS	AC=1;AF=0.5;AN=2;DP=4598;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:69,60:129:99:1426,0,1956:49,20,38,22
chr1	144877176	.	C	T	1129.88	PASS	AC=1;AF=0.5;AN=2;DP=4453;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,64:113:99:1671,0,1367:33,16,43,21
chr1	144877366	.	A	G	1309.05	PASS	AC=1;AF=0.5;AN=2;DP=5105;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:66,66:132:99:1801,0,1645:23,43,22,44
chr1	144877390	.	G	A	945.15	PASS	AC=1;AF=0.5;AN=2;DP=3645;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:1270,0,1281:11,34,12,33
chr1	144878928	.	G	T	2504.06	PASS	AC=1;AF=0.5;AN=2;DP=10003;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:132,100:232:99:2481,0,3498:85,47,69,31
chr1	144879054	.	T	C	1711.92	PASS	AC=1;AF=0.5;AN=2;DP=1323;MQ=60;set=variant15-variant29-variant44	GT:AD:DP:GQ:PL:SB	0/1:366,113:479:99:1740,0,9284:165,201,55,58
chr1	144879264	.	A	G	582.37	PASS	AC=1;AF=0.602;AN=2;DP=1746;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:551,0,702:10,13,7,12
chr1	144879375	.	T	C	691.25	PASS	AC=1;AF=0.5;AN=2;DP=4941;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,72:122:99:1922,0,1171:33,17,46,26
chr1	144881711	.	T	G	33.56	PASS	AC=1;AF=0.5;AN=2;DP=1325;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-filterInvariant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:686,0,859:6,23,4,18
chr1	144882581	.	A	G	1908.64	PASS	AC=1;AF=0.5;AN=2;DP=4418;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:2063,0,2125:39,23,39,27
chr1	144882823	.	C	T	5139.25	PASS	AC=1;AF=0.5;AN=2;DP=19290;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:221,255:476:99:6379,0,5483:86,135,97,158
chr1	144882912	.	G	T	994.54	PASS	AC=1;AF=0.5;AN=2;DP=4557;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,61:115:99:1893,0,1625:12,42,13,48
chr1	144886063	.	T	C	1145.18	PASS	AC=1;AF=0.5;AN=2;DP=4135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,38:100:99:971,0,1657:36,26,25,13
chr1	144886092	.	C	T	1489.41	PASS	AC=1;AF=0.5;AN=2;DP=5434;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:79,59:138:99:1511,0,2086:43,36,37,22
chr1	144886197	.	A	T	2470.65	PASS	AC=1;AF=0.5;AN=2;DP=8208;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:99,109:208:99:2673,0,2154:46,53,53,56
chr1	144886409	.	A	C	236.09	PASS	AC=1;AF=0.5;AN=2;DP=1527;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:683,0,638:7,16,5,20
chr1	144890833	.	T	C	302.34	PASS	AC=1;AF=0.5;AN=2;DP=1166;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:580,0,402:11,4,16,3
chr1	144892089	.	G	T	914.53	PASS	AC=1;AF=0.5;AN=2;DP=3181;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,38:87:99:995,0,1347:34,15,25,13
chr1	144892149	.	G	A	1865.57	PASS	AC=1;AF=0.5;AN=2;DP=6725;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,83:189:99:1919,0,2407:56,50,48,35
chr1	144901139	.	T	C	7615.44	PASS	AC=1;AF=0.5;AN=2;DP=21374;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:359,123:482:99:2698,0,9095:179,180,54,69
chr1	144910082	.	A	G	820.94	PASS	AC=1;AF=0.727;AN=2;DP=3090;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,72:83:99:1848,0,108:4,7,30,42
chr1	144911702	.	C	A	415.59	PASS	AC=1;AF=0.5;AN=2;DP=920;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:562,0,349:4,1,10,3
chr1	144911704	.	G	C	415.59	PASS	AC=1;AF=0.5;AN=2;DP=950;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:562,0,349:5,1,11,3
chr1	144912153	.	A	G	161.01	PASS	AC=1;AF=0.744;AN=2;DP=560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,16:21:99:487,0,123:4,1,12,4
chr1	144912233	.	C	T	371.08	PASS	AC=1;AF=0.5;AN=2;DP=1264;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:566,0,398:9,10,12,12
chr1	144915561	.	G	A	1600.31	PASS	AC=1;AF=0.5;AN=2;DP=6400;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,82:157:99:1895,0,1930:28,47,31,51
chr1	144915624	.	G	A	1014.16	PASS	AC=1;AF=0.5;AN=2;DP=2529;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:1018,0,877:3,23,7,26
chr1	144916676	.	C	T	548.09	PASS	AC=1;AF=0.5;AN=2;DP=5205;MQ=60;set=variant-variant2-filterInvariant3-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,87:183:99:2136,0,2268:52,44,45,42
chr1	144916748	.	C	G	1631.42	PASS	AC=1;AF=0.5;AN=2;DP=5632;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:78,72:150:99:1813,0,1818:38,40,28,44
chr1	144917546	.	A	G	1227.64	PASS	AC=1;AF=0.5;AN=2;DP=5831;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,68:148:99:1519,0,1987:40,40,31,37
chr1	144917827	.	CA	C	82.25	PASS	AC=1;AF=0.5;AN=2;DP=1055;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:415,0,334:7,4,9,4
chr1	144917841	.	T	C	590.47	PASS	AC=1;AF=0.5;AN=2;DP=1594;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:411,0,288:6,4,10,5
chr1	144918034	.	A	G	61.66	PASS	AC=1;AF=0.5;AN=2;DP=567;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-filterInvariant9-variant11-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:300,0,350:4,9,1,9
chr1	144918957	.	T	A	1270.16	PASS	AC=1;AF=0.5;AN=2;DP=3877;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,63:117:99:1393,0,1173:31,23,31,32
chr1	144919008	.	AC	A	716.79	PASS	AC=1;AF=0.5;AN=2;DP=2546;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-filterInvariant38-variant39-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1688,0,1450:23,26,24,31
chr1	144919094	.	C	T	469.18	PASS	AC=1;AF=0.5;AN=2;DP=1116;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:318,0,487:3,13,2,10
chr1	144922109	.	A	G	1979.31	PASS	AC=1;AF=0.5;AN=2;DP=9221;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:135,109:244:99:2813,0,3459:66,69,58,51
chr1	144922171	.	C	T	1873.19	PASS	AC=1;AF=0.5;AN=2;DP=10009;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:137,142:279:99:3311,0,3427:61,76,68,74
chr1	144922523	.	C	T	644.47	PASS	AC=1;AF=0.5;AN=2;DP=4763;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-variant11-variant12-variant15-variant16-variant17-filterInvariant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,83:179:99:1685,0,2276:52,44,44,39
chr1	144922583	.	G	A	2290.83	PASS	AC=1;AF=0.5;AN=2;DP=6341;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:105,72:177:99:1540,0,2556:44,61,31,41
chr1	144923823	.	TAGGAAGAAACGGCA	T	2299.16	PASS	AC=1;AF=0.761;AN=2;DP=6057;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,104:143:99:4212,0,1642:17,22,33,71
chr1	144923887	.	T	A	563.43	PASS	AC=1;AF=0.5;AN=2;DP=1220;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant12-variant15-variant16-variant18-variant20-variant22-variant25-variant27-variant28-variant29-filterInvariant35-variant38-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,18:78:99:411,0,1779:14,46,3,15
chr1	144930571	.	C	A	842.96	PASS	AC=1;AF=0.5;AN=2;DP=3282;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1150,0,1223:28,19,29,18
chr1	144930596	.	C	A	1061.8	PASS	AC=1;AF=0.5;AN=2;DP=4255;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,57:111:99:1357,0,1347:28,26,34,23
chr1	144930940	.	T	C	3408.15	PASS	AC=1;AF=0.5;AN=2;DP=10589;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:165,141:306:99:3332,0,4369:78,87,66,75
chr1	144931330	.	C	T	1867.03	PASS	AC=1;AF=0.5;AN=2;DP=13290;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:209,142:351:99:3390,0,5575:95,114,71,71
chr1	144931392	.	G	A	1785.93	PASS	AC=1;AF=0.5;AN=2;DP=12111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:148,156:304:99:3851,0,3791:79,69,74,82
chr1	144931727	.	G	A	1221.25	PASS	AC=1;AF=0.5;AN=2;DP=8283;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,133:277:99:3385,0,3689:60,84,56,77
chr1	144931873	.	C	G	2611.39	PASS	AC=1;AF=0.5;AN=2;DP=5542;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:217,88:305:99:1464,0,5353:110,107,46,42
chr1	144932086	.	G	C	2510.74	PASS	AC=1;AF=0.5;AN=2;DP=10396;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:138,121:259:99:2941,0,3290:68,70,56,65
chr1	144932151	.	G	T	637.43	PASS	AC=1;AF=0.5;AN=2;DP=7247;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,109:233:99:2777,0,3476:59,65,54,55
chr1	144932196	.	TTCCGGCTCTGC	T	5067.21	PASS	AC=1;AF=0.5;AN=2;DP=5698;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:186,51:237:99:1659,0,6599:105,81,28,23
chr1	144932208	.	G	A	5082	PASS	AC=1;AF=0.5;AN=2;DP=5424;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:191,51:242:99:1619,0,8024:113,78,28,23
chr1	144932220	.	G	T	4824.86	PASS	AC=1;AF=0.5;AN=2;DP=5579;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,53:238:99:1589,0,7683:108,77,28,25
chr1	144932342	.	T	G	2408.08	PASS	AC=1;AF=0.5;AN=2;DP=14777;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:209,206:415:99:4720,0,5310:107,102,106,100
chr1	144932414	.	A	C	2909.87	PASS	AC=1;AF=0.5;AN=2;DP=13330;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:196,175:371:99:6722,0,8021:86,110,78,97
chr1	144932415	.	C	G	2909.87	PASS	AC=1;AF=0.5;AN=2;DP=13271;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:198,174:372:99:6725,0,8014:88,110,79,95
chr1	144945941	.	G	A	789.81	PASS	AC=2;AF=1;AN=2;DP=868;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.542;ReadPosRankSum=-1.735;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1348,105,0:0,0,30,5
chr1	144946183	.	G	A	3969.91	PASS	AC=1;AF=0.5;AN=2;DP=17089;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:243,236:479:99:5589,0,5783:129,114,116,120
chr1	144946403	.	T	C	2271.18	PASS	AC=1;AF=0.5;AN=2;DP=7138;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:88,105:193:99:2791,0,2317:42,46,51,54
chr1	144946510	.	C	T	7390.86	PASS	AC=2;AF=0.943;AN=2;DP=8929;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:7175,663,0:0,0,118,103
chr1	144946768	.	G	A	1506.56	PASS	AC=1;AF=0.5;AN=2;DP=4629;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,43:99:99:1160,0,1561:17,39,11,32
chr1	144946876	.	C	T	400.79	PASS	AC=1;AF=0.5;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,619:0,6,0,4
chr1	144951973	.	T	C	4189.54	PASS	AC=1;AF=0.5;AN=2;DP=8820;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:116,134:250:99:3275,0,2640:63,53,85,49
chr1	144952078	.	C	A	2498.81	PASS	AC=1;AF=0.5;AN=2;DP=11632;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:256,102:358:99:1989,0,6556:116,140,47,55
chr1	144952207	.	C	T	243.64	PASS	AC=1;AF=0.5;AN=2;DP=4179;set=variant-filterInvariant4-variant5-variant7-variant8-variant9-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-variant17-variant18-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant28-variant31-variant33-filterInvariant34-filterInvariant35-variant36-variant37-variant39-filterInvariant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:149,29:178:99:315,0,3975:49,100,10,19
chr1	144952220	.	C	T	835.11	PASS	AC=1;AF=0.5;AN=2;DP=5405;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,56:151:99:1222,0,2347:31,64,18,38
chr1	144994658	.	C	A	4865.19	PASS	AC=1;AF=0.5;AN=2;DP=20914;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:294,265:559:99:6458,0,7704:172,122,165,100
chr1	144994861	.	C	T	11380	PASS	AC=1;AF=0.58;AN=2;DP=26573;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:87,652:739:99:18564,0,562:41,46,297,355
chr1	144994902	.	G	A	1990.56	PASS	AC=1;AF=0.5;AN=2;DP=15939;MQ=60;set=variant2-filterInvariant7-filterInvariant9-filterInvariant10-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant28-variant29-variant30-filterInvariant32-variant33-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:620,82:702:99:480,0,18208:278,342,42,40
chr1	145013802	.	T	G	1096.58	PASS	AC=2;AF=1;AN=2;DP=1505;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,40:42:89:1392,89,0:2,0,32,8
chr1	145014103	.	G	C	1601.75	PASS	AC=1;AF=0.5;AN=2;DP=6959;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:96,91:187:99:2481,0,2707:45,51,41,50
chr1	145014186	.	GAA	G,GA,GAAA	1305.56	PASS	AC=0,1,0;AF=0.257,0.135,0.108;AN=2;DP=4502;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:141:99:45,40,29,27
chr1	145014210	.	G	A	1593.67	PASS	AC=1;AF=0.5;AN=2;DP=5262;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-filterInvariant36-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,67:187:99:1962,0,4269:64,56,35,32
chr1	145014218	.	G	A	1686.75	PASS	AC=1;AF=0.5;AN=2;DP=4032;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-variant8-filterInvariant9-variant10-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant20-variant21-variant27-variant28-variant29-variant30-variant35-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:151,36:187:99:615,0,5687:80,71,21,15
chr1	145014263	.	C	T	2250.11	PASS	AC=1;AF=0.5;AN=2;DP=7609;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,118:202:99:3136,0,2139:42,42,60,58
chr1	145014394	.	C	T	969.97	PASS	AC=1;AF=0.5;AN=2;DP=2997;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,63:92:99:2384,0,1724:5,24,17,46
chr1	145014411	.	T	C	759.71	PASS	AC=1;AF=0.5;AN=2;DP=2272;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,49:74:99:2046,0,1577:5,20,14,35
chr1	145015601	.	T	G	73.93	PASS	AC=1;AF=0.5;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant2-variant11-filterInvariant15-variant16-filterInvariant18-filterInvariant20-variant24-variant28-variant31-variant32-variant33-filterInvariant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,5:44:90:90,0,1203:31,8,5,0
chr1	145015877	.	G	T	711.74	PASS	AC=1;AF=0.5;AN=2;DP=4367;FractionInformativeReads=1;MQ=60;set=variant-filterInvariant2-variant3-filterInvariant6-variant8-variant9-filterInvariant10-variant12-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant33-variant35-variant38-filterInvariant39-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:182,27:209:99:210,0,5371:104,78,14,13
chr1	145016020	.	T	G	3447.14	PASS	AC=2;AF=0.989;AN=2;DP=5351;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5047,476,0:0,0,57,102
chr1	145016032	.	C	CA	264.95	PASS	AC=1;AF=0.5;AN=2;DP=3889;MQ=60;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant15-filterInvariant16-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,40:118:99:725,0,2188:27,51,8,32
chr1	145016034	.	A	AC	121.35	PASS	AC=1;AF=0.5;AN=2;DP=1054;MQ=60;set=filterInvariant5-variant7-filterInvariant12-filterInvariant15-variant19-variant22-variant25-filterInvariant32-filterInvariant35-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:110,24:134:99:248,0,3404:33,77,10,14
chr1	145017784	.	CTT	CT,C	159.27	PASS	AC=1,0;AF=0.636,0.091;AN=2;DP=1028;set=Intersection	GT:DP:GQ:SB	0/1:35:99:3,6,13,13
chr1	145017822	.	C	CTCCTTCCTTCCCTCCCCTCCCCTCCCTTCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCTTCCT,CTCCTTCCTTCCCTCCCCCCCCCTCCCTCCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCTCCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCCTCCCTTCCTTCCT	396.15	PASS	AC=0,0,1,0,0,0;AF=0.063,0.344,0.031,0.031,0.094,0.031;AN=2;DP=224;set=variant-variant2-variant5-variant7-variant10-variant12-variant15-variant17-variant23-variant26-variant28-variant29-variant32-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:10:99:0,4,0,6
chr1	145017834	.	T	C	128.11	PASS	AC=1;AF=0.5;AN=2;DP=470;set=variant2-variant3-variant4-variant6-filterInvariant8-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-filterInvariant31-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:99:112,0,824:8,12,0,4
chr1	145018023	.	G	T	1059.8	PASS	AC=1;AF=0.5;AN=2;DP=5442;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:99,64:163:99:1485,0,2438:44,55,26,38
chr1	145018102	.	G	GAGAA	380.43	PASS	AC=1;AF=0.5;AN=2;DP=1489;MQ=60;set=variant2-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant15-variant16-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,13:54:99:422,0,1848:13,28,4,9
chr1	145021024	.	G	C	716.34	PASS	AC=1;AF=0.5;AN=2;DP=3298;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:65,38:103:99:896,0,1845:48,17,26,12
chr1	145021089	.	G	A	66.5	PASS	AC=1;AF=0.5;AN=2;DP=7472;MQ=60;set=filterInvariant-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:233,29:262:92:92,0,6880:147,86,19,10
chr1	145038686	.	AG	A	174.45	PASS	AC=1;AF=0.5;AN=2;DP=475;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:195,0,325:6,4,5,1
chr1	145038736	.	C	G	476.74	PASS	AC=1;AF=0.5;AN=2;DP=1898;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:446,0,805:18,8,13,5
chr1	145038815	.	A	G	3081.99	PASS	AC=2;AF=0.864;AN=2;DP=4927;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,117:118:99:3791,309,0:1,0,79,38
chr1	145038952	.	C	T	2089.6	PASS	AC=1;AF=0.5;AN=2;DP=10232;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:147,128:275:99:3345,0,3782:69,78,57,71
chr1	145039026	.	T	C	540.29	PASS	AC=1;AF=0.5;AN=2;DP=9933;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,94:288:99:2138,0,4843:88,106,45,49
chr1	145039562	.	C	T	833.96	PASS	AC=1;AF=0.5;AN=2;DP=8007;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:146,114:260:99:2638,0,3987:93,53,70,44
chr1	145039594	.	T	C	231.42	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2196;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:296,39:335:99:238,0,8271:175,121,22,17
chr1	145039633	.	C	T	476.87	PASS	AC=1;AF=0.5;AN=2;DP=9102;MQ=60;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant6-variant8-filterInvariant9-variant10-filterInvariant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant27-variant29-filterInvariant33-filterInvariant35-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:363,58:421:99:452,0,9836:206,157,32,26
chr1	145039821	.	C	A	2478.53	PASS	AC=1;AF=0.5;AN=2;DP=18285;MQ=60;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-filterInvariant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:466,142:608:99:2754,0,17914:244,222,72,70
chr1	145039831	.	A	G	2549.09	PASS	AC=1;AF=0.5;AN=2;DP=19912;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:400,218:618:99:6803,0,10798:205,195,112,106
chr1	145039866	.	A	G	4713.77	PASS	AC=1;AF=0.5;AN=2;DP=20613;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:307,298:605:99:7561,0,7892:147,160,142,156
chr1	145039922	.	G	C	109.48	PASS	AC=1;AF=0.5;AN=2;DP=13546;MQ=60;set=filterInvariant2-variant5-variant7-variant8-variant9-variant10-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant25-filterInvariant26-variant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant36-variant38-variant39-filterInvariant40-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:477,87:564:99:889,0,12706:204,273,44,43
chr1	145040039	.	G	C	2225.55	PASS	AC=1;AF=0.5;AN=2;DP=9406;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:131,109:240:99:2784,0,3405:46,85,39,70
chr1	145040054	.	A	G	1520.53	PASS	AC=1;AF=0.5;AN=2;DP=7552;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,86:181:99:2148,0,3349:30,65,36,50
chr1	145040063	.	CT	C	1540.04	PASS	AC=1;AF=0.5;AN=2;DP=5186;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant36-variant38-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,68:144:99:2294,0,2995:31,45,19,49
chr1	145074882	.	G	T	94.66	PASS	AC=1;AF=0.5;AN=2;DP=4324;MQ=60;set=filterInvariant-variant2-variant5-variant6-filterInvariant7-variant8-filterInvariant9-variant11-variant13-variant15-variant18-variant20-filterInvariant21-variant22-variant23-variant24-variant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-filterInvariant34-variant35-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,36:162:99:723,0,3684:87,39,27,9
chr1	145074939	.	T	C	2060.97	PASS	AC=1;AF=0.5;AN=2;DP=11990;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:166,143:309:99:3461,0,4139:102,64,89,54
chr1	145075208	.	T	A	448.24	PASS	AC=1;AF=0.5;AN=2;DP=5363;MQ=60;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant36-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,43:159:99:972,0,3045:42,74,13,30
chr1	145075519	.	G	C	181.35	PASS	AC=1;AF=0.5;AN=2;DP=2150;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:969,0,1034:25,12,21,12
chr1	145075683	.	C	T	2480.3	PASS	AC=1;AF=0.5;AN=2;DP=13825;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:224,211:435:99:4816,0,5380:130,94,116,95
chr1	145075854	.	G	C	6694.88	PASS	AC=1;AF=0.5;AN=2;DP=26249;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:397,358:755:99:8545,0,9516:199,198,184,174
chr1	145075903	.	C	T	2896.28	PASS	AC=1;AF=0.5;AN=2;DP=18036;MQ=60;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-variant8-filterInvariant9-filterInvariant10-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-variant35-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:515,166:681:99:2981,0,14636:248,267,75,91
chr1	145075923	.	C	T	1996.84	PASS	AC=1;AF=0.5;AN=2;DP=19954;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant34-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:570,88:658:99:623,0,17922:270,300,39,49
chr1	145076161	.	C	G	2249.43	PASS	AC=1;AF=0.5;AN=2;DP=8527;MQ=60;set=variant2-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant8-variant11-filterInvariant13-variant15-variant16-filterInvariant19-variant20-filterInvariant21-variant22-variant23-variant24-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:230,74:304:99:1442,0,6544:87,143,25,49
chr1	145076241	.	C	T	279.8	PASS	AC=1;AF=0.5;AN=2;DP=3423;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,41:94:99:1117,0,1827:7,46,12,29
chr1	145076284	.	C	G	561.6	PASS	AC=2;AF=0.625;AN=2;DP=1767;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,42:44:41:1446,41,0:0,2,9,33
chr1	145103844	.	G	A	617.51	PASS	AC=1;AF=0.5;AN=2;DP=4769;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:98,36:134:99:641,0,2851:66,32,22,14
chr1	145103928	.	G	A	1379.64	PASS	AC=1;AF=0.5;AN=2;DP=8223;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant8-variant10-filterInvariant11-filterInvariant14-variant15-variant16-variant17-variant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant27-filterInvariant28-variant29-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-variant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:250,83:333:99:1266,0,5995:127,123,42,41
chr1	145103947	.	T	C	1399.73	PASS	AC=1;AF=0.5;AN=2;DP=13325;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:261,84:345:99:1367,0,6315:124,137,37,47
chr1	145104052	.	AGT	A	966.84	PASS	AC=1;AF=0.5;AN=2;DP=5641;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,43:124:99:1540,0,3182:21,60,16,27
chr1	145109430	.	A	T	260.49	PASS	AC=1;AF=0.5;AN=2;DP=2502;MQ=60;set=variant-variant3-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-filterInvariant22-filterInvariant23-variant25-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-filterInvariant35-variant38-filterInvariant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,23:104:99:502,0,2482:61,20,19,4
chr1	145109456	.	C	T	863.17	PASS	AC=1;AF=0.5;AN=2;DP=5344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,33:164:99:686,0,3628:89,42,26,7
chr1	145109468	.	A	G	5854.28	PASS	AC=2;AF=0.955;AN=2;DP=6598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:7157,594,0:0,0,137,61
chr1	145109493	.	C	T	788.41	PASS	AC=1;AF=0.5;AN=2;DP=6568;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant34-variant35-variant38-filterInvariant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,52:247:99:961,0,5292:125,70,37,15
chr1	145109549	.	G	T	1247.91	PASS	AC=1;AF=0.5;AN=2;DP=14134;MQ=60;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:313,71:384:99:1002,0,8427:176,137,38,33
chr1	145109583	.	C	A	4525.34	PASS	AC=1;AF=0.5;AN=2;DP=15878;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:241,176:417:99:4166,0,6019:126,115,88,88
chr1	145109661	.	G	A	1647.67	PASS	AC=1;AF=0.5;AN=2;DP=14434;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:303,106:409:99:1870,0,7988:131,172,41,65
chr1	145109809	.	T	A	174.88	PASS	AC=1;AF=0.5;AN=2;DP=1366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,5:47:61:61,0,1567:4,38,1,4
chr1	145112284	.	CCG	C	232.12	PASS	AC=1;AF=0.5;AN=2;DP=3146;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:67,23:90:99:741,0,4032:50,17,15,8
chr1	145112287	.	T	C	388.25	PASS	AC=1;AF=0.5;AN=2;DP=3080;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,25:91:99:599,0,2373:48,18,18,7
chr1	145112288	.	G	GCA	259.66	PASS	AC=1;AF=0.5;AN=2;DP=3258;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,23:94:99:789,0,4024:53,18,15,8
chr1	145112313	.	T	C	678.15	PASS	AC=1;AF=0.5;AN=2;DP=5034;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,33:144:99:759,0,3420:80,31,24,9
chr1	145112414	.	T	C	2034.63	PASS	AC=1;AF=0.5;AN=2;DP=16742;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:374,90:464:99:2679,0,17140:207,167,49,41
chr1	145112420	.	C	T	1691.25	PASS	AC=1;AF=0.5;AN=2;DP=16981;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:377,113:490:99:1976,0,10892:204,173,65,48
chr1	145112428	.	C	T	2054.79	PASS	AC=1;AF=0.5;AN=2;DP=17834;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:397,100:497:99:2834,0,17732:217,180,54,46
chr1	145112485	.	C	T	1028.37	PASS	AC=1;AF=0.5;AN=2;DP=16240;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:356,89:445:99:1322,0,9203:157,199,42,47
chr1	145115658	.	TATTTTTAA	T	1084.54	PASS	AC=1;AF=0.5;AN=2;DP=3969;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,24:99:99:783,0,3855:56,19,18,6
chr1	145115810	.	A	G	3980.04	PASS	AC=1;AF=0.5;AN=2;DP=14917;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:214,149:363:99:4199,0,5076:98,116,71,78
chr1	145115820	.	T	C	1185.79	PASS	AC=1;AF=0.5;AN=2;DP=13880;MQ=60;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:288,67:355:99:938,0,12720:133,155,32,35
chr1	145139088	.	C	CG	868.97	PASS	AC=2;AF=1;AN=2;DP=973;FS=0;MQRankSum=-0.98;ReadPosRankSum=-1.281;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:66:817,66,0:0,0,21,0
chr1	145209012	.	G	A	336.7	PASS	AC=1;AF=0.5;AN=2;DP=2002;set=variant2-filterInvariant5-filterInvariant6-filterInvariant7-variant11-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant24-filterInvariant27-filterInvariant28-filterInvariant31-variant32-filterInvariant35-filterInvariant40-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,19:121:99:131,0,2668:73,29,11,8
chr1	145209116	.	T	C	620.93	PASS	AC=1;AF=0.5;AN=2;DP=7392;set=variant2-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant18-filterInvariant19-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-filterInvariant32-variant33-variant35-filterInvariant36-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:260,52:312:99:385,0,6061:140,120,25,27
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G,GCCCCGCCAACCGCCGGGGTTCCCCGCCAACCGCCGGGGTT	6540.38	PASS	AC=1,0;AF=0.648,0.023;AN=2;DP=14035;set=Intersection	GT:DP:GQ:SB	0/1:210:99:44,30,77,59
chr1	145209811	.	C	T	1852.69	PASS	AC=1;AF=0.5;AN=2;DP=393;FS=5.233;FractionInformativeReads=1;MQ=44.6;MQRankSum=-0.782;QD=4.71;ReadPosRankSum=1.873;SOR=0.55;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:291,102:393:99:1881,0,8403:130,161,52,50
chr1	145209819	.	C	T	63.81	PASS	AC=1;AF=0.5;AN=2;DP=9681;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant15-filterInvariant16-filterInvariant17-variant19-variant20-variant21-filterInvariant22-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:328,47:375:99:760,0,10190:170,158,8,39
chr1	145209869	.	A	C	883.92	PASS	AC=1;AF=0.5;AN=2;DP=13508;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:294,66:360:99:1947,0,12006:142,152,44,22
chr1	145209870	.	A	G	883.92	PASS	AC=1;AF=0.5;AN=2;DP=13585;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:294,69:363:99:1947,0,12006:142,152,46,23
chr1	145210099	.	A	C	636.59	PASS	AC=1;AF=0.5;AN=2;DP=1019;set=variant7-variant8-variant13-variant15-filterInvariant17-variant25-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:99,30:129:99:562,0,2853:25,74,10,20
chr1	145248811	.	A	G	129.87	PASS	AC=1;AF=0.5;AN=2;DP=200;FractionInformativeReads=1;set=variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant28-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:151,0,214:0,7,0,5
chr1	145273302	.	A	G	1155.75	PASS	AC=1;AF=0.5;AN=2;DP=31581;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:723,201:924:99:3224,0,18272:411,312,122,79
chr1	145273345	.	T	C	1312.76	PASS	AC=1;AF=0.5;AN=2;DP=41004;set=variant-filterInvariant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:944,256:1200:99:3965,0,23792:476,468,136,120
chr1	145273473	.	T	C	1114.92	PASS	AC=1;AF=0.5;AN=2;DP=17561;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:413,127:540:99:2257,0,11490:135,278,40,87
chr1	145273520	.	G	A	766.97	PASS	AC=1;AF=0.5;AN=2;DP=7788;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,55:231:99:1128,0,5655:35,141,13,42
chr1	145281247	.	T	A	765.85	PASS	AC=1;AF=0.5;AN=2;DP=4926;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,42:146:99:862,0,2949:95,9,40,2
chr1	145281361	.	TC	T	1193.5	PASS	AC=1;AF=0.5;AN=2;DP=30445;set=filterInvariant-variant2-variant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant12-variant15-variant16-filterInvariant18-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant40-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:948,258:1206:99:5979,0,31567:571,377,168,90
chr1	145281408	.	C	T	3394.21	PASS	AC=1;AF=0.5;AN=2;DP=53450;set=variant-variant2-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1237,362:1599:99:5450,0,31722:680,557,209,153
chr1	145281543	.	C	T	3315.7	PASS	AC=1;AF=0.5;AN=2;DP=39050;set=variant-variant2-filterInvariant3-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:865,317:1182:99:6238,0,23959:351,514,130,187
chr1	145281613	.	C	A	2178.96	PASS	AC=1;AF=0.5;AN=2;DP=23891;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:603,162:765:99:4706,0,24711:230,373,61,101
chr1	145281633	.	C	A	2930.23	PASS	AC=1;AF=0.5;AN=2;DP=20847;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:502,146:648:99:4614,0,22618:181,321,58,88
chr1	145281656	.	A	T	263.77	PASS	AC=1;AF=0.5;AN=2;DP=14070;set=filterInvariant-variant2-variant5-variant6-variant7-filterInvariant8-filterInvariant9-variant11-filterInvariant12-variant15-variant16-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant28-variant29-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant40-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:426,123:549:99:3872,0,18234:150,276,48,75
chr1	145281780	.	T	A	314.56	PASS	AC=1;AF=0.5;AN=2;DP=6927;set=variant-variant2-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant32-variant33-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:197,48:245:99:772,0,6017:107,90,19,29
chr1	145281818	.	T	A	285.02	PASS	AC=1;AF=0.5;AN=2;DP=3407;set=filterInvariant-filterInvariant4-filterInvariant5-filterInvariant10-filterInvariant11-variant12-variant14-filterInvariant15-variant17-variant18-variant20-filterInvariant22-filterInvariant27-variant28-filterInvariant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:212,36:248:99:490,0,6066:117,95,21,15
chr1	145282093	.	G	A	1122.05	PASS	AC=1;AF=0.5;AN=2;DP=7768;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,85:242:99:2144,0,4846:35,122,25,60
chr1	145290317	.	C	T	211.39	PASS	AC=1;AF=0.5;AN=2;DP=624;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant28-filterInvariant29-filterInvariant30-variant32-variant36-variant37-filterInvariant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,7:26:99:171,0,902:14,5,5,2
chr1	145290320	.	C	T	359.98	PASS	AC=1;AF=0.5;AN=2;DP=981;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:440,0,514:12,4,9,6
chr1	145290346	.	A	G	746.92	PASS	AC=1;AF=0.5;AN=2;DP=1597;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:990,0,524:14,3,20,7
chr1	145290351	.	A	G	40.15	PASS	AC=1;AF=0.5;AN=2;DP=1149;set=filterInvariant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-filterInvariant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,12:50:99:228,0,1589:30,8,8,4
chr1	145290377	.	T	C	303.2	PASS	AC=1;AF=0.5;AN=2;DP=2605;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,31:73:99:820,0,1268:33,9,20,11
chr1	145290398	.	G	A	372.2	PASS	AC=1;AF=0.5;AN=2;DP=2518;set=variant-variant2-variant4-variant5-variant6-variant8-filterInvariant9-variant11-variant13-variant15-variant16-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-filterInvariant29-variant32-variant33-variant36-filterInvariant39-variant40-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:79,21:100:99:320,0,2738:55,24,13,8
chr1	145290401	.	T	G	730.04	PASS	AC=1;AF=0.5;AN=2;DP=3594;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,24:105:99:743,0,3556:55,26,16,8
chr1	145290409	.	G	A	733.04	PASS	AC=1;AF=0.5;AN=2;DP=4040;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,25:119:99:747,0,3714:61,33,16,9
chr1	145290498	.	T	G	290.17	PASS	AC=1;AF=0.5;AN=2;DP=4641;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-filterInvariant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant35-variant36-filterInvariant37-filterInvariant38-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,26:156:99:251,0,3320:59,71,11,15
chr1	145290535	.	C	T	421.15	PASS	AC=1;AF=0.5;AN=2;DP=3710;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-variant32-variant33-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,16:116:99:311,0,2761:39,61,5,11
chr1	145290547	.	C	A	346.57	PASS	AC=1;AF=0.5;AN=2;DP=3186;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,13:99:99:285,0,2733:32,54,3,10
chr1	145290553	.	C	T	229.88	PASS	AC=1;AF=0.5;AN=2;DP=2348;set=variant-filterInvariant2-variant4-filterInvariant5-variant6-variant8-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant31-variant32-variant33-variant36-filterInvariant37-variant39-variant40-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:70,20:90:99:346,0,2250:21,49,9,11
chr1	145290560	.	T	C	245.75	PASS	AC=1;AF=0.5;AN=2;DP=2551;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-variant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant35-variant36-filterInvariant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,12:82:99:294,0,2308:24,46,3,9
chr1	145290570	.	G	A	252.52	PASS	AC=1;AF=0.5;AN=2;DP=1896;set=variant-filterInvariant2-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant31-variant32-variant33-variant36-variant37-variant39-variant40-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:51,17:68:99:390,0,1740:13,38,6,11
chr1	145293012	.	G	A	117.78	PASS	AC=1;AF=0.5;AN=2;DP=3090;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:769,0,1347:30,18,22,13
chr1	145293059	.	A	G	416.21	PASS	AC=1;AF=0.5;AN=2;DP=3105;set=variant2-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant11-filterInvariant13-variant14-filterInvariant15-variant18-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-variant32-filterInvariant33-variant36-filterInvariant40-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,13:130:99:196,0,5316:63,54,9,4
chr1	145293069	.	A	T	479.37	PASS	AC=1;AF=0.5;AN=2;DP=3441;set=variant2-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant11-filterInvariant13-variant14-filterInvariant15-variant18-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-variant32-filterInvariant33-variant36-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:123,15:138:99:221,0,5409:66,57,10,5
chr1	145293425	.	C	A	891.1	PASS	AC=1;AF=0.5;AN=2;DP=18718;set=variant-filterInvariant2-filterInvariant4-variant5-filterInvariant6-variant8-variant9-filterInvariant10-variant11-filterInvariant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:528,116:644:99:1483,0,13889:307,221,70,46
chr1	145293469	.	G	C	2753.93	PASS	AC=1;AF=0.5;AN=2;DP=13268;set=variant2-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant11-filterInvariant12-variant15-variant16-filterInvariant20-variant22-filterInvariant23-variant24-filterInvariant29-variant32-filterInvariant34-variant35-variant40-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:708,154:862:99:2203,0,18904:384,324,85,69
chr1	145293490	.	G	C	2489.25	PASS	AC=1;AF=0.5;AN=2;DP=27067;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-variant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:747,159:906:99:2893,0,28864:382,365,85,74
chr1	145293498	.	G	C	2601.15	PASS	AC=1;AF=0.5;AN=2;DP=28882;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:621,289:910:99:8299,0,16186:308,313,156,133
chr1	145293510	.	C	G	1331.77	PASS	AC=1;AF=0.5;AN=2;DP=26773;set=variant-variant2-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:743,162:905:99:2013,0,19586:362,381,81,81
chr1	145293566	.	G	A	959.5	PASS	AC=1;AF=0.5;AN=2;DP=19164;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant17-variant18-variant19-variant21-filterInvariant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:594,119:713:99:1614,0,14729:267,327,50,69
chr1	145295539	.	A	G	204.12	PASS	AC=1;AF=0.625;AN=2;DP=1077;FractionInformativeReads=1;set=variant7-filterInvariant8-variant10-variant13-filterInvariant14-filterInvariant15-variant18-filterInvariant22-filterInvariant23-variant26-filterInvariant28-filterInvariant29-variant30-filterInvariant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,24:160:99:301,0,3541:62,74,9,15
chr1	145296268	.	C	T,G	1509.06	PASS	AC=1,0;AF=0.389,0.125;AN=2;DP=3885;set=variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant33-variant35-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:127:99:55,16,43,13
chr1	145296372	.	A	G	2101.39	PASS	AC=1;AF=0.558;AN=2;DP=10422;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:221,151:372:99:3481,0,5427:113,108,82,69
chr1	145296451	.	G	C	1556.61	PASS	AC=1;AF=0.5;AN=2;DP=322;FS=0;FractionInformativeReads=1;MQ=47.14;MQRankSum=6.103;QD=4.83;ReadPosRankSum=-3.267;SOR=0.695;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:237,85:322:99:1585,0,5893:98,139,35,50
chr1	145296478	.	G	T	1132.06	PASS	AC=1;AF=0.557;AN=2;DP=6617;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,102:235:99:2357,0,3256:55,78,37,65
chr1	145297458	.	G	C	236.6	PASS	AC=1;AF=0.5;AN=2;DP=2141;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,10:67:99:170,0,1943:52,5,10,0
chr1	145297788	.	G	A	931.8	PASS	AC=1;AF=0.5;AN=2;DP=5365;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant31-variant34-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:150,119:269:99:3196,0,4148:44,106,34,85
chr1	145297817	.	G	C	2392.12	PASS	AC=1;AF=0.557;AN=2;DP=5067;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:79,98:177:99:3070,0,2219:17,62,16,82
chr1	145298186	.	C	G	367.26	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3454;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:61,44:105:99:797,0,1333:27,34,21,23
chr1	145298416	.	A	G	114.49	PASS	AC=1;AF=0.5;AN=2;DP=578;set=variant-filterInvariant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant18-variant19-filterInvariant20-variant21-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,5:28:99:110,0,697:20,3,5,0
chr1	145298473	.	A	G	147.76	PASS	AC=1;AF=0.5;AN=2;DP=719;FractionInformativeReads=1;set=variant-variant2-filterInvariant4-variant5-variant8-variant9-variant11-variant13-filterInvariant15-variant16-variant18-variant19-filterInvariant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,4:31:59:59,0,791:12,15,2,2
chr1	145301587	.	G	T	296.19	DRAGENHardSNP	AC=1;AF=0.512;AN=2;DP=1811;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:368,0,798:31,0,18,0
chr1	145301697	.	C	T	1265.35	PASS	AC=1;AF=0.5;AN=2;DP=14452;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:243,170:413:99:3025,0,5181:134,109,86,84
chr1	145301793	.	A	G	1088.01	PASS	AC=1;AF=0.5;AN=2;DP=9450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,78:254:99:2489,0,6964:65,111,29,49
chr1	145301802	.	C	G	1096.32	PASS	AC=1;AF=0.5;AN=2;DP=8235;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,65:229:99:2278,0,6736:61,103,23,42
chr1	145301831	.	A	G	85.46	PASS	AC=1;AF=0.5;AN=2;DP=3369;set=filterInvariant-variant2-variant5-variant6-variant8-filterInvariant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant27-variant28-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,29:122:99:806,0,3659:33,60,8,21
chr1	145301836	.	A	G	72.72	PASS	AC=1;AF=0.5;AN=2;DP=2830;FractionInformativeReads=1;set=filterInvariant-variant2-variant5-variant6-variant8-filterInvariant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant27-filterInvariant29-variant32-variant33-variant34-variant35-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,23:106:99:742,0,3379:32,51,6,17
chr1	145301853	.	C	G	574.01	PASS	AC=2;AF=0.818;AN=2;DP=2530;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1619,151,0:0,0,17,33
chr1	145301887	.	G	A	319.61	PASS	AC=1;AF=0.5;AN=2;DP=1609;set=variant2-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant21-filterInvariant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,10:37:99:339,0,990:14,13,6,4
chr1	145301907	.	A	C	313.59	PASS	AC=1;AF=0.5;AN=2;DP=1577;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,11:37:99:349,0,971:13,13,6,5
chr1	145302505	.	G	C	732.77	PASS	AC=2;AF=1;AN=2;DP=978;FS=0;MQRankSum=0.315;ReadPosRankSum=1.103;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:779,84,0:0,0,20,8
chr1	145303971	.	A	G	696.96	PASS	AC=2;AF=0.625;AN=2;DP=6280;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-filterInvariant12-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant24-filterInvariant25-variant26-variant28-variant31-filterInvariant32-filterInvariant34-variant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3529,333,0:0,0,35,76
chr1	145304153	.	A	G	283	PASS	AC=1;AF=0.5;AN=2;DP=1811;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,19:53:99:421,0,924:9,25,5,14
chr1	145304393	.	T	C	141.38	PASS	AC=1;AF=0.5;AN=2;DP=579;set=filterInvariant-filterInvariant3-filterInvariant5-filterInvariant7-filterInvariant9-filterInvariant15-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant24-filterInvariant25-filterInvariant28-variant31-filterInvariant34-filterInvariant38-filterInvariant39-filterInvariant40-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:32,7:39:99:112,0,855:30,2,7,0
chr1	145304787	.	G	T	101.49	PASS	AC=1;AF=0.5;AN=2;DP=1766;set=variant-variant2-filterInvariant3-variant4-variant6-variant7-filterInvariant9-filterInvariant11-filterInvariant13-variant15-variant16-filterInvariant17-variant18-variant20-filterInvariant21-variant22-variant24-variant28-variant31-filterInvariant32-filterInvariant34-filterInvariant35-variant38-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:58,14:72:99:227,0,1964:8,50,1,13
chr1	145310197	.	C	T	833.27	PASS	AC=1;AF=0.5;AN=2;DP=3761;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:973,0,1140:8,28,19,25
chr1	145310932	.	C	A	94.22	PASS	AC=2;AF=0.523;AN=2;DP=850;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,9:10:5:282,5,0:1,0,9,0
chr1	145310983	.	G	C	1076.85	PASS	AC=2;AF=0.591;AN=2;DP=3396;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,37:38:99:1276,104,0:1,0,32,5
chr1	145311083	.	A	C	1674.9	PASS	AC=1;AF=0.5;AN=2;DP=8358;set=variant2-variant5-filterInvariant6-variant7-variant8-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-filterInvariant19-filterInvariant20-variant22-variant23-variant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,72:251:99:1091,0,4352:100,79,48,24
chr1	145311249	.	T	C	629.62	PASS	AC=1;AF=0.5;AN=2;DP=766;FractionInformativeReads=1;set=variant8-filterInvariant15-filterInvariant25-filterInvariant36-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:146,44:190:99:738,0,3410:54,92,13,31
chr1	145311785	.	C	G	38.79	PASS	AC=2;AF=0.864;AN=2;DP=427;set=filterInvariant3-filterInvariant12-variant15-variant19-filterInvariant20-filterInvariant21-filterInvariant25-filterInvariant31-filterInvariant34-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:581,54,0:0,0,10,8
chr1	145311828	.	C	G	2543.6	PASS	AC=2;AF=1;AN=2;DP=5991;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1959,192,0:0,0,42,22
chr1	145312597	.	T	C	34.7	PASS	AC=2;AF=0.609;AN=2;DP=700;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-filterInvariant9-filterInvariant12-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant25-filterInvariant28-variant31-variant34-variant39-filterInvariant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:746,90,0:0,0,16,14
chr1	145323539	.	T	G	297.12	PASS	AC=1;AF=0.5;AN=2;DP=2005;FractionInformativeReads=1;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:540,0,967:33,1,22,0
chr1	145323757	.	A	T	3333.93	PASS	AC=2;AF=0.773;AN=2;DP=7976;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,243:244:99:7445,686,0:1,0,60,183
chr1	145349628	.	A	C	68.04	PASS	AC=1;AF=0.813;AN=2;DP=27;FS=0;FractionInformativeReads=1;ReadPosRankSum=0.727;set=filterInvariant6-filterInvariant9-filterInvariant15-variant19-variant20-variant25-filterInvariant34-variant40	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:23:69,0,23:0,1,0,3
chr1	145354324	.	G	A	53.67	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;set=variant4-variant11-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:92:92,0,189:0,5,0,3
chr1	145365316	.	G	A	2140.4	PASS	AC=2;AF=0.704;AN=2;DP=4746;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant31-variant34-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,205:206:99:5530,580,0:0,1,116,89
chr1	145365372	.	C	G	2773.74	PASS	AC=2;AF=0.741;AN=2;DP=6857;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant31-variant34-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,299:301:99:7767,810,0:0,2,148,151
chr1	145365506	.	G	T	679.23	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=2194;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:1,62:63:99:1642,160,0:1,0,16,46
chr1	145366463	.	C	T	121.63	PASS	AC=1;AF=0.525;AN=2;DP=460;set=variant3-filterInvariant4-variant6-filterInvariant7-variant8-variant9-variant12-variant13-filterInvariant15-variant17-variant20-variant21-variant22-variant24-variant26-filterInvariant28-filterInvariant32-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:37,10:47:99:107,0,987:18,19,5,5
chr1	145367014	.	G	A	285.99	PASS	AC=2;AF=0.595;AN=2;DP=766;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:439,39,0:0,0,11,2
chr1	145367083	.	G	C	468.33	PASS	AC=1;AF=0.5;AN=2;DP=1627;set=variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-filterInvariant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:319,0,646:15,12,9,7
chr1	145367094	.	C	T	36.22	PASS	AC=1;AF=0.5;AN=2;DP=1921;set=filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,17:50:99:309,0,755:18,15,9,8
chr1	145367178	.	T	G	68.77	PASS	AC=1;AF=0.5;AN=2;DP=1569;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:433,0,582:8,14,7,12
chr1	145367466	.	C	G	55.54	PASS	AC=2;AF=0.646;AN=2;DP=140;FS=0;FractionInformativeReads=1;set=variant-variant4-variant6-variant7-variant8-variant10-variant12-variant13-filterInvariant15-variant17-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:76,9,0:0,0,2,1
chr1	145367657	.	T	G	121.58	PASS	AC=2;AF=0.773;AN=2;DP=109;FractionInformativeReads=1;set=variant6-filterInvariant15-filterInvariant19-variant20-variant21-filterInvariant25-variant31-variant34-filterInvariant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:98,9,0:0,0,3,0
chr1	145368473	.	G	C	865.96	PASS	AC=1;AF=0.5;AN=2;DP=26846;set=filterInvariant-filterInvariant2-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:629,110:739:99:1037,0,17126:371,258,73,37
chr1	145368518	.	C	T	1449.22	PASS	AC=1;AF=0.5;AN=2;DP=37792;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:797,200:997:99:2057,0,20657:425,372,107,93
chr1	145368664	.	G	T	2091.17	PASS	AC=1;AF=0.5;AN=2;DP=747;FractionInformativeReads=1;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:304,101:405:99:2119,0,8494:107,197,31,70
chr1	145438578	.	C	A	811.53	PASS	AC=2;AF=1;AN=2;DP=917;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.545;ReadPosRankSum=-1.139;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1041,87,0:0,0,19,10
chr1	145441620	.	T	C	9188.9	PASS	AC=2;AF=0.943;AN=2;DP=10161;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,276:277:99:8439,818,0:1,0,137,139
chr1	145441840	.	TA	T	6736.82	PASS	AC=2;AF=0.943;AN=2;DP=6432;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:7432,599,0:0,0,109,90
chr1	145442254	.	G	C	6977.94	PASS	AC=2;AF=0.955;AN=2;DP=5774;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:5868,412,0:0,0,49,87
chr1	145442264	.	T	A	6549.05	PASS	AC=2;AF=0.955;AN=2;DP=5145;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5456,367,0:0,0,41,77
chr1	145456732	.	GA	G	38.49	PASS	AC=1;AF=0.5;AN=2;DP=2906;MQ=60;set=filterInvariant-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant11-filterInvariant15-filterInvariant16-variant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant25-filterInvariant26-filterInvariant27-filterInvariant33-variant34-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:81,20:101:99:191,0,1733:37,44,8,12
chr1	145470445	.	A	G	679.02	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:707,0,577:15,10,16,10
chr1	145471549	.	A	C	190.46	PASS	AC=2;AF=1;AN=2;DP=546;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.552;ReadPosRankSum=-0.822;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:530,51,0:0,0,10,7
chr1	145472558	.	GCCC	G,GCC,GC	1437.38	PASS	AC=0,0,2;AF=0.136,0.17,0.614;AN=2;DP=3308;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:53:99:1,0,33,19
chr1	145474626	.	A	C	610.64	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=6169;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:181,50:231:99:672,0,9770:34,147,50,0
chr1	145474630	.	T	C	159.58	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5906;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:178,44:222:99:663,0,9639:33,145,44,0
chr1	145474634	.	A	C	131.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3395;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:177,36:213:99:441,0,9678:34,143,36,0
chr1	145474635	.	T	C	127.05	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=806;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:178,34:212:99:425,0,9681:35,143,34,0
chr1	145500921	.	C	CTA	15988.8	PASS	AC=2;AF=0.955;AN=2;DP=11302;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,337:338:99:15049,993,0:1,0,209,128
chr1	145510376	.	A	G	546.92	DRAGENHardSNP	AC=2;AF=0.955;AN=2;DP=1132;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:742,87,0:0,0,13,16
chr1	145517063	.	G	A	787.99	PASS	AC=2;AF=0.953;AN=2;DP=994;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1140,93,0:0,0,26,5
chr1	145531980	.	T	C	2251.69	PASS	AC=2;AF=1;AN=2;DP=2850;FS=0;MQ=60;MQRankSum=-0.675;ReadPosRankSum=-0.147;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2655,245,0:0,0,48,34
chr1	145532010	.	CTGTG	CTGTGTG,CTGTGTGTG,CTGTGTGTGTG,C,CTG	227.92	PASS	AC=0,1,0,0,0;AF=0.21,0.194,0.065,0.048,0.065;AN=2;DP=2080;set=variant-filterInvariant3-variant4-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-filterInvariant22-variant24-variant27-variant28-variant29-variant30-variant31-filterInvariant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:50:99:14,17,12,7
chr1	145532030	.	GTGTGTGTGTGTGTGTGTGTGTA	G	107.35	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=103;FS=6.118;FractionInformativeReads=0.757;MQ=59.9;MQRankSum=1.973;QD=1.04;ReadPosRankSum=2.702;SOR=0.73;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:64,14:78:99:145,0,2191:25,39,8,6
chr1	145532032	.	GTGTGTGTGTGTGTGTGTGTA	G	450.54	PASS	AC=1;AF=0.5;AN=2;DP=575;set=variant-variant7-variant9-variant10-variant15-variant26-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,19:76:99:284,0,1958:25,32,6,13
chr1	145532549	.	T	C	6078.82	PASS	AC=2;AF=1;AN=2;DP=7570;FS=0;MQ=60;MQRankSum=1.492;ReadPosRankSum=0.409;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5537,506,0:0,0,86,83
chr1	145533314	.	T	C	2866.24	PASS	AC=1;AF=0.656;AN=2;DP=5775;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,84:194:99:2043,0,2655:68,42,50,34
chr1	145535611	.	T	G	1574.28	PASS	AC=2;AF=0.75;AN=2;DP=1558;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1390,135,0:0,0,29,16
chr1	145535921	.	T	C	6516.04	PASS	AC=2;AF=0.75;AN=2;DP=9532;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,268:268:99:8309,804,0:0,0,145,123
chr1	145536082	.	G	A	1274.99	PASS	AC=1;AF=0.5;AN=2;DP=1371;MQ=60;set=variant-variant7-variant9-variant10-variant15-variant21-variant26-variant34-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,64:136:99:1680,0,2035:23,49,21,43
chr1	145538139	.	C	T	837.32	PASS	AC=1;AF=0.5;AN=2;DP=994;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant21-variant26-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,66:133:99:1806,0,1802:33,34,28,38
chr1	145538664	.	A	G	5392.48	PASS	AC=2;AF=0.75;AN=2;DP=6852;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,178:179:99:5429,525,0:1,0,88,90
chr1	145538871	.	A	G	1988.55	PASS	AC=1;AF=0.5;AN=2;DP=601;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:39,59:98:99:1606,0,1037:19,20,26,33
chr1	145539892	.	T	A	906.65	PASS	AC=1;AF=0.5;AN=2;DP=884;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant21-variant26-variant34-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,48:101:99:1186,0,1364:18,35,14,34
chr1	145542281	.	G	A	1181.3	PASS	AC=1;AF=0.5;AN=2;DP=913;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant21-variant26-variant34-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,61:100:99:1446,0,1024:17,22,29,32
chr1	145543545	.	T	C	570.41	PASS	AC=1;AF=0.5;AN=2;DP=410;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant21-variant26-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:949,0,782:15,17,17,18
chr1	145558565	.	C	G	2765.2	PASS	AC=2;AF=0.989;AN=2;DP=3886;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3821,315,0:0,0,22,83
chr1	145558824	.	A	C	772.91	PASS	AC=1;AF=0.641;AN=2;DP=2426;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:968,0,1261:30,13,25,13
chr1	145561594	.	C	T	624.13	PASS	AC=1;AF=0.63;AN=2;DP=3317;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant21-variant26-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,68:134:99:1549,0,1664:39,27,37,31
chr1	145562293	.	G	C	969.86	PASS	AC=1;AF=0.763;AN=2;DP=6172;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,101:187:99:2557,0,2027:46,40,50,51
chr1	145562881	.	T	C	1241.49	PASS	AC=1;AF=0.655;AN=2;DP=3330;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,57:128:99:1266,0,1612:38,33,28,29
chr1	145566535	.	C	T	326.2	PASS	AC=1;AF=0.655;AN=2;DP=1037;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:593,0,655:17,3,15,5
chr1	145568537	.	AT	A	213.29	PASS	AC=2;AF=0.977;AN=2;DP=775;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:583,63,0:0,0,4,17
chr1	145568637	.	C	T	229.17	PASS	AC=1;AF=0.825;AN=2;DP=102;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant31-variant32-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:111,0,120:1,3,0,3
chr1	145585317	.	A	G	2749.25	PASS	AC=2;AF=0.989;AN=2;DP=5231;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5052,490,0:0,0,103,61
chr1	145586309	.	C	T	1454.01	PASS	AC=2;AF=1;AN=2;DP=1764;FS=0;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.179;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1593,158,0:0,0,23,30
chr1	145586403	.	G	T	1535.56	PASS	AC=2;AF=0.977;AN=2;DP=1744;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1362,138,0:0,0,20,26
chr1	145586780	.	T	C	3069.65	PASS	AC=2;AF=0.595;AN=2;DP=6150;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant21-variant23-variant25-variant27-variant33-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,298:298:99:9213,892,0:0,0,135,163
chr1	145588184	.	T	C	414.73	PASS	AC=1;AF=0.654;AN=2;DP=764;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:219,0,275:6,6,4,4
chr1	145588536	.	C	T	1714.2	PASS	AC=1;AF=0.757;AN=2;DP=4500;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,60:128:99:1394,0,1623:36,32,33,27
chr1	145589491	.	A	T	1992.3	PASS	AC=2;AF=0.989;AN=2;DP=4276;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3513,293,0:0,0,45,52
chr1	145589516	.	G	C	545.13	PASS	AC=1;AF=0.633;AN=2;DP=2711;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1264,0,1385:25,29,28,26
chr1	145589666	.	C	A	400.31	PASS	AC=2;AF=0.989;AN=2;DP=683;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:635,48,0:0,0,2,14
chr1	145594220	.	C	T	2110.38	PASS	AC=1;AF=0.5;AN=2;DP=497;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant17-variant21	GT:AD:DP:GQ:PL:SB	0/1:74,52:126:99:1299,0,1776:33,41,16,36
chr1	145594799	.	C	T	481.36	PASS	AC=1;AF=0.743;AN=2;DP=484;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:192,0,186:5,2,5,2
chr1	145597116	.	C	T	2751.98	PASS	AC=2;AF=0.989;AN=2;DP=4498;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3523,323,0:0,0,43,65
chr1	145597417	.	C	A	614.27	PASS	AC=1;AF=0.66;AN=2;DP=1466;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:836,0,960:23,14,22,12
chr1	145598459	.	T	C	2378.69	PASS	AC=2;AF=0.989;AN=2;DP=3720;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3223,299,0:0,0,46,54
chr1	145601861	.	G	A	2798	PASS	AC=2;AF=0.989;AN=2;DP=3739;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3634,338,0:0,0,37,76
chr1	145688667	.	TA	T	3834.15	PASS	AC=1;AF=0.909;AN=2;DP=6814;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,157:181:16:3319,0,16:12,12,89,68
chr1	145689271	.	A	G	1460.03	PASS	AC=1;AF=0.646;AN=2;DP=2264;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1450,0,1535:31,36,23,35
chr1	145690472	.	C	T	1375.8	PASS	AC=1;AF=0.63;AN=2;DP=2745;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,85:152:99:2448,0,1522:29,38,28,57
chr1	145695923	.	T	G	593.94	PASS	AC=2;AF=0.989;AN=2;DP=871;MQ=60;MQRankSum=-1.169;ReadPosRankSum=0.734;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:921,75,0:0,0,20,5
chr1	145696694	.	G	A	573.58	PASS	AC=1;AF=0.646;AN=2;DP=1341;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:826,0,886:14,16,16,19
chr1	145697315	.	ATTT	AT,A,ATT,ATTTT,ATTTTT	1326.8	PASS	AC=1,0,0,0,0;AF=0.211,0.224,0.25,0.039,0.013;AN=2;DP=7034;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:149:99:36,34,35,44
chr1	145697799	.	A	G	7194.57	PASS	AC=2;AF=0.989;AN=2;DP=7829;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6892,632,0:0,0,69,142
chr1	145697814	.	CT	C	345.97	PASS	AC=1;AF=0.5;AN=2;DP=6040;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,46:114:99:621,0,1217:22,46,13,33
chr1	145698023	.	C	G	437.11	PASS	AC=1;AF=0.646;AN=2;DP=774;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:380,0,817:18,4,12,0
chr1	145706564	.	CAA	CA,CAAA,CAAAA,C	168.86	PASS	AC=0,1,0,0;AF=0.227,0.25,0.045,0.023;AN=2;DP=579;set=variant3-filterInvariant4-filterInvariant5-variant6-variant9-variant11-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41	GT:DP:GQ:SB	0/2:18:41:5,2,6,5
chr1	145826770	.	G	A	4554.81	PASS	AC=2;AF=0.757;AN=2;DP=5120;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5853,517,0:0,0,110,63
chr1	146013577	.	A	C	352.31	PASS	AC=1;AF=0.534;AN=2;DP=2690;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:942,0,1032:12,27,18,21
chr1	146035833	.	C	G	70.68	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=27;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:76,9,0:0,0,1,2
chr1	146215022	.	T	C	386.62	DRAGENHardSNP	AC=1;AF=0.693;AN=2;DP=1403;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:581,0,642:19,8,23,3
chr1	146215111	.	G	A	5334.07	DRAGENHardSNP	AC=1;AF=0.761;AN=2;DP=8761;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:126,187:313:99:7540,0,4661:79,47,122,65
chr1	146215113	.	G	A	5334.07	DRAGENHardSNP	AC=1;AF=0.761;AN=2;DP=8939;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:125,193:318:99:7540,0,4661:79,46,126,67
chr1	146215138	.	A	G	3652.35	PASS	AC=1;AF=0.795;AN=2;DP=10834;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:161,223:384:99:4784,0,3239:94,67,139,84
chr1	146215189	.	G	C	1472.67	PASS	AC=1;AF=0.548;AN=2;DP=7521;set=filterInvariant-filterInvariant2-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant11-variant12-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:181,234:415:99:4997,0,3656:93,88,116,118
chr1	146215223	.	G	C	5189.29	PASS	AC=1;AF=0.727;AN=2;DP=10113;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:160,212:372:99:8213,0,5742:73,87,89,123
chr1	146215232	.	A	C	4924.69	PASS	AC=1;AF=0.727;AN=2;DP=9730;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:152,204:356:99:7964,0,5673:66,86,86,118
chr1	146215276	.	C	T	1759.76	PASS	AC=1;AF=0.75;AN=2;DP=6557;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:116,114:230:99:2497,0,2800:46,70,35,79
chr1	146215376	.	T	C	359.41	PASS	AC=1;AF=0.727;AN=2;DP=1993;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:456,0,908:8,28,1,20
chr1	146218842	.	T	A	126.54	PASS	AC=2;AF=0.955;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQRankSum=-1.741;ReadPosRankSum=0.348;set=filterInvariant7-filterInvariant9-variant12-variant13-variant15-filterInvariant19-filterInvariant25-variant30-filterInvariant31-filterInvariant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:59,9,0:0,0,2,1
chr1	146232733	.	T	C	767.13	PASS	AC=2;AF=1;AN=2;DP=239;FS=0;set=variant7-variant9-variant12-variant13-variant15-variant19-variant25-variant30-variant31-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:740,69,0:0,0,6,17
chr1	146245933	.	A	C	37.69	PASS	AC=1;AF=0.6;AN=2;DP=30;FS=0;FractionInformativeReads=1;set=variant15-filterInvariant16-variant31-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,393:4,2,1,1
chr1	146245936	.	T	C	37.69	PASS	AC=1;AF=0.6;AN=2;DP=30;FS=0;FractionInformativeReads=1;set=variant15-filterInvariant16-variant31-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,393:4,2,1,1
chr1	146248831	.	T	C	79.52	DRAGENHardSNP	AC=1;AF=0.875;AN=2;DP=44;FS=0;FractionInformativeReads=1;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:99:108,0,1252:10,10,2,2
chr1	146248832	.	A	C	79.52	DRAGENHardSNP	AC=1;AF=0.875;AN=2;DP=44;FS=0;FractionInformativeReads=1;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:99:108,0,1252:10,10,2,2
chr1	146248834	.	C	T	79.52	DRAGENHardSNP	AC=1;AF=0.875;AN=2;DP=44;FS=0;FractionInformativeReads=1;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:99:108,0,1252:10,10,2,2
chr1	146248841	.	G	T	79.52	DRAGENHardSNP	AC=1;AF=0.875;AN=2;DP=44;FS=0;FractionInformativeReads=1;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:99:108,0,1252:10,10,2,2
chr1	146250855	.	C	T	213.34	DRAGENHardSNP	AC=1;AF=0.641;AN=2;DP=1946;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:40,14:54:99:184,0,859:23,17,7,7
chr1	146250905	.	G	C	248.36	DRAGENHardSNP	AC=1;AF=0.621;AN=2;DP=2024;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:46,14:60:99:166,0,958:23,23,7,7
chr1	146317771	.	C	A	565.91	PASS	AC=1;AF=0.589;AN=2;DP=595;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:225,0,440:1,12,4,5
chr1	146395313	.	A	G	124.68	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant11-filterInvariant15-variant16-variant23-variant28-variant29-variant37-variant39-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:108,0,167:4,0,3,0
chr1	146395315	.	T	C	124.68	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant11-filterInvariant15-variant16-variant23-variant28-variant29-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:108,0,167:4,0,3,0
chr1	146395447	.	A	G	395.24	PASS	AC=1;AF=0.5;AN=2;DP=3865;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,40:104:99:690,0,1582:41,23,21,19
chr1	146395537	.	A	G	299.67	PASS	AC=1;AF=0.5;AN=2;DP=3964;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,33:109:99:654,0,1867:27,49,9,24
chr1	146395558	.	G	A	397.3	PASS	AC=1;AF=0.5;AN=2;DP=811;set=variant7-variant9-variant12-filterInvariant13-variant15-variant19-variant25-variant30-variant31-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,22:87:99:603,0,1770:12,53,2,20
chr1	146397300	.	G	A	1517.07	PASS	AC=1;AF=0.542;AN=2;DP=1106;FractionInformativeReads=1;set=variant7-variant9-variant12-variant13-variant15-variant19-variant25-variant30-variant31-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,71:122:99:1786,0,1201:30,21,40,31
chr1	146397489	.	G	T	1221.62	PASS	AC=1;AF=0.542;AN=2;DP=1216;FractionInformativeReads=1;set=variant7-variant9-variant12-variant13-variant15-variant19-variant25-variant30-variant31-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1103,0,1383:21,35,20,26
chr1	146398203	.	A	G,T	1041.54	DRAGENHardSNP	AC=1,0;AF=0.489,0.011;AN=2;DP=3558;FractionInformativeReads=1;set=FilteredInAll	GT:DP:GQ:SB	0/1:94:99:33,16,30,15
chr1	146398208	.	A	G	1155.19	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3921;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:53,51:104:99:1855,0,2431:35,18,32,19
chr1	146398387	.	G	C	46.93	PASS	AC=1;AF=0.5;AN=2;DP=1311;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:32,10:42:99:154,0,807:19,13,2,8
chr1	146399411	.	G	A	510.32	PASS	AC=2;AF=0.927;AN=2;DP=1080;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:926,96,0:0,0,21,11
chr1	146399525	.	C	A	322.36	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=1.037;FractionInformativeReads=1;MQ=35.71;MQRankSum=-2.944;QD=5.2;ReadPosRankSum=-1.408;SOR=0.896;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:42,20:62:99:351,0,1437:23,19,12,8
chr1	146409969	.	A	C	213.43	DRAGENHardSNP	AC=2;AF=0.789;AN=2;DP=370;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:446,48,0:0,0,13,3
chr1	146418342	.	G	T	145.87	DRAGENHardSNP	AC=2;AF=0.75;AN=2;DP=150;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:130,15,0:0,0,4,1
chr1	146418491	.	T	C	156.95	DRAGENHardSNP	AC=2;AF=0.688;AN=2;DP=52;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:80,9,0:0,0,0,3
chr1	146466146	.	G	T	1634.11	PASS	AC=2;AF=0.789;AN=2;DP=1323;set=variant3-variant5-variant7-variant9-variant15-variant18-variant19-variant21-variant23-variant24-variant26-variant28-variant29-variant32-variant35-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1293,117,0:0,0,8,31
chr1	146491003	.	T	C	67.72	PASS	AC=1;AF=0.625;AN=2;DP=100;FractionInformativeReads=1;set=variant3-variant9-variant15-variant19-variant24-variant26-variant28-variant35-filterInvariant37-variant39-variant40-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:89:163,0,89:2,1,3,4
chr1	146491057	.	C	A	155.49	PASS	AC=1;AF=0.571;AN=2;DP=154;FractionInformativeReads=1;set=variant-filterInvariant6-variant9-variant10-variant12-variant15-filterInvariant17-variant19-variant20-variant25-variant31-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:196,0,134:1,4,3,4
chr1	146491095	.	A	G	172.01	PASS	AC=2;AF=0.941;AN=2;DP=419;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant31-variant33-variant34-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:471,42,0:0,0,4,10
chr1	146493279	.	C	T	691.77	PASS	AC=2;AF=0.947;AN=2;DP=517;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:675,45,0:0,0,14,1
chr1	146493280	.	A	G	691.77	PASS	AC=2;AF=0.947;AN=2;DP=522;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:675,45,0:0,0,14,1
chr1	146494510	.	T	C	373.62	PASS	AC=1;AF=0.765;AN=2;DP=117;FractionInformativeReads=1;set=variant4-variant5-variant7-variant13-variant15-variant20-variant21-variant23-variant25-variant26-filterInvariant28-variant29-variant35-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:237,0,304:4,1,4,2
chr1	146494511	.	G	A	106.77	PASS	AC=1;AF=0.75;AN=2;DP=70;FS=0;FractionInformativeReads=1;set=variant5-variant7-variant15-variant23-variant26-filterInvariant28-variant29-variant35-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:237,0,304:4,1,4,2
chr1	146495506	.	T	G	360.3	PASS	AC=2;AF=1;AN=2;DP=334;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:136,12,0:0,0,3,1
chr1	146514576	.	T	C	1536.43	PASS	AC=1;AF=0.543;AN=2;DP=3812;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant18-variant19-variant23-variant24-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:102,57:159:99:1287,0,2428:62,40,35,22
chr1	146584316	.	T	A	289.04	PASS	AC=1;AF=0.525;AN=2;DP=1673;set=variant-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1042,0,1247:23,27,19,22
chr1	146584337	.	G	A	200.93	PASS	AC=1;AF=0.524;AN=2;DP=1481;set=variant-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:934,0,981:19,21,17,18
chr1	146628479	.	C	G	2919.02	PASS	AC=1;AF=0.524;AN=2;DP=5822;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant28-variant31-variant33-variant34-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:161,167:328:99:3965,0,3760:81,80,81,86
chr1	146656292	.	A	G	775.48	PASS	AC=2;AF=0.898;AN=2;DP=2864;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2826,245,0:0,0,22,60
chr1	146672906	.	C	T	1368.77	PASS	AC=2;AF=0.898;AN=2;DP=5087;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4163,389,0:0,0,69,61
chr1	146673178	.	A	G	1137.52	PASS	AC=2;AF=0.966;AN=2;DP=1259;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1208,99,0:0,0,7,26
chr1	146680262	.	A	G	713.25	PASS	AC=2;AF=0.898;AN=2;DP=1798;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1376,129,0:0,0,29,14
chr1	146685121	.	G	A	670.24	PASS	AC=2;AF=0.898;AN=2;DP=2058;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1591,150,0:0,0,16,34
chr1	146687250	.	A	T	510.49	PASS	AC=2;AF=0.966;AN=2;DP=523;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:697,54,0:0,0,15,3
chr1	146696955	.	G	C	629.27	PASS	AC=2;AF=0.643;AN=2;DP=2034;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2605,237,0:0,0,43,36
chr1	146714255	.	A	G	1383.97	PASS	AC=2;AF=0.8;AN=2;DP=3845;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,119:120:99:3469,349,0:1,0,56,63
chr1	146714281	.	C	G	1160.21	PASS	AC=2;AF=0.636;AN=2;DP=3173;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3205,314,0:0,0,51,54
chr1	146714392	.	G	T,C	2135.73	PASS	AC=0,2;AF=0.233,0.628;AN=2;DP=7339;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:193:99:0,0,109,84
chr1	146714588	.	C	T	678.67	PASS	AC=2;AF=0.73;AN=2;DP=2034;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2256,203,0:0,0,19,49
chr1	146724093	.	A	G	2340.16	PASS	AC=2;AF=0.966;AN=2;DP=2990;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3145,258,0:0,0,36,50
chr1	146728149	.	A	G	1008.46	PASS	AC=1;AF=0.583;AN=2;DP=1291;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant23-variant26-variant27-variant30-variant32-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,54:99:99:1475,0,1151:28,17,36,18
chr1	146728162	.	T	TA	3319.4	PASS	AC=2;AF=0.966;AN=2;DP=3714;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3989,322,0:0,0,67,39
chr1	146739068	.	T	C	452.48	PASS	AC=1;AF=0.588;AN=2;DP=959;set=variant5-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant23-variant26-variant27-variant30-variant32-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,35:80:99:788,0,1135:28,17,23,12
chr1	146739277	.	T	C	351.8	PASS	AC=2;AF=0.73;AN=2;DP=1873;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2344,207,0:0,0,18,51
chr1	146740576	.	G	A	2579.68	PASS	AC=2;AF=0.872;AN=2;DP=9138;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:7446,729,0:0,0,110,134
chr1	146747153	.	T	C	1546.45	PASS	AC=2;AF=0.86;AN=2;DP=4300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2804,243,0:0,0,20,61
chr1	146747232	.	C	T	265.78	PASS	AC=1;AF=0.63;AN=2;DP=660;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:368,0,304:0,9,1,10
chr1	146748008	.	CAGCCA	C	310.54	PASS	AC=1;AF=0.63;AN=2;DP=626;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:447,0,761:5,14,3,9
chr1	146748072	.	A	G	238.54	PASS	AC=2;AF=0.989;AN=2;DP=353;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,9:10:25:393,25,0:1,0,0,9
chr1	146751782	.	A	C	3652.31	PASS	AC=2;AF=0.966;AN=2;DP=5896;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3803,370,0:0,0,64,60
chr1	146756222	.	AAAAC	A	227.78	PASS	AC=1;AF=0.63;AN=2;DP=1029;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,27:40:99:1082,0,626:4,9,10,17
chr1	146759528	.	A	G	249.11	PASS	AC=1;AF=0.63;AN=2;DP=570;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:484,0,313:3,8,4,12
chr1	146762865	.	A	G	103.54	PASS	AC=2;AF=0.864;AN=2;DP=154;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:154,12,0:0,0,4,0
chr1	146762984	.	A	C	448.73	PASS	AC=1;AF=0.588;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant23-variant26-variant27-variant30-variant32-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,15:47:99:595,0,1659:22,10,13,2
chr1	146762985	.	G	A	448.73	PASS	AC=1;AF=0.588;AN=2;DP=544;MQ=60;set=variant5-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant23-variant26-variant27-variant30-variant32-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,17:49:99:595,0,1659:22,10,15,2
chr1	146763089	.	G	A	1432.49	PASS	AC=2;AF=0.793;AN=2;DP=4346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4399,416,0:0,0,75,64
chr1	146763415	.	T	C	399.59	PASS	AC=2;AF=0.793;AN=2;DP=926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1009,84,0:0,0,4,24
chr1	146763438	.	A	G	393.12	PASS	AC=2;AF=0.955;AN=2;DP=634;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:693,57,0:0,0,4,15
chr1	146766069	.	C	CAT	5400.27	PASS	AC=2;AF=0.966;AN=2;DP=5892;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6979,469,0:0,0,94,60
chr1	146767149	.	G	T	2481.48	PASS	AC=2;AF=0.966;AN=2;DP=3446;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2852,281,0:0,0,52,42
chr1	146767320	.	A	G	4136.4	PASS	AC=2;AF=0.793;AN=2;DP=11073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,313:313:99:9199,937,0:0,0,162,151
chr1	146767353	.	G	A	3239.8	PASS	AC=1;AF=0.588;AN=2;DP=5376;MQ=60;set=variant5-variant8-variant11-variant13-variant15-variant19-variant20-variant22-variant23-variant26-variant27-variant30-variant32-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:227,160:387:99:3554,0,5459:114,113,83,77
chr1	146767486	.	T	C	2745.48	PASS	AC=2;AF=0.793;AN=2;DP=5067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:6084,424,0:0,0,44,97
chr1	146767490	.	G	A	5694.46	PASS	AC=2;AF=0.966;AN=2;DP=5072;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:5928,406,0:0,0,38,91
chr1	146767494	.	C	G	2562.17	PASS	AC=2;AF=0.793;AN=2;DP=4399;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5490,367,0:0,0,33,85
chr1	147013362	.	A	G	184.62	PASS	AC=2;AF=0.763;AN=2;DP=1476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1536,153,0:0,0,23,28
chr1	147087721	.	T	A	1523.96	PASS	AC=2;AF=0.683;AN=2;DP=1646;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2173,198,0:0,0,21,45
chr1	147091651	.	G	C	1218.36	PASS	AC=1;AF=0.5;AN=2;DP=136;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.879;QD=8.96;ReadPosRankSum=0.347;SOR=0.721;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:84,52:136:99:1247,0,2474:43,41,27,25
chr1	147091972	.	C	T	877.86	PASS	AC=2;AF=0.648;AN=2;DP=3120;MQ=60;set=variant-variant2-variant4-variant8-variant11-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,174:175:99:5540,511,0:1,0,69,105
chr1	147096794	.	A	G	1474.61	PASS	AC=2;AF=0.932;AN=2;DP=2618;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2187,201,0:0,0,26,41
chr1	147096828	.	C	G	1375.41	PASS	AC=2;AF=0.989;AN=2;DP=2021;MQ=60;MQRankSum=0.796;ReadPosRankSum=-0.726;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1771,149,0:0,0,22,28
chr1	147097635	.	C	T	639.04	PASS	AC=2;AF=0.92;AN=2;DP=2920;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2332,209,0:0,0,33,37
chr1	147119273	.	G	A	2984.52	PASS	AC=2;AF=0.811;AN=2;DP=3533;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3392,339,0:0,0,54,59
chr1	147121977	.	C	T	2546.5	PASS	AC=2;AF=1;AN=2;DP=4059;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3088,314,0:0,0,62,43
chr1	147124310	.	T	G	1895.41	PASS	AC=2;AF=0.817;AN=2;DP=2912;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2511,249,0:0,0,48,35
chr1	147131465	.	T	C	2437.89	PASS	AC=2;AF=0.805;AN=2;DP=3084;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2739,237,0:0,0,46,33
chr1	147131501	.	A	T	940.89	PASS	AC=2;AF=0.638;AN=2;DP=3002;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3612,342,0:0,0,64,50
chr1	147131945	.	T	C	337.42	PASS	AC=2;AF=0.808;AN=2;DP=522;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:698,54,0:0,0,2,16
chr1	147229299	.	G	A	925.32	PASS	AC=1;AF=0.866;AN=2;DP=1658;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:280,0,610:13,9,5,6
chr1	147229382	.	G	A	1202.9	PASS	AC=2;AF=1;AN=2;DP=2286;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1576,155,0:0,0,26,26
chr1	147229628	.	G	GGGGCATTTGCCAGAGGTACATACCA	587.95	PASS	AC=1;AF=0.683;AN=2;DP=1545;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:855,0,760:10,13,8,13
chr1	147229662	.	G	A	632.84	PASS	AC=1;AF=0.615;AN=2;DP=538;MQ=60;set=variant5-variant6-variant8-variant14-variant15-variant17-variant21-variant22-variant25-variant28-variant33-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:505,0,679:16,13,8,11
chr1	147230217	.	T	C	1930.55	PASS	AC=1;AF=0.866;AN=2;DP=3869;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,64:124:99:1550,0,1446:37,23,37,27
chr1	147231531	.	T	C	458.04	PASS	AC=2;AF=1;AN=2;DP=592;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:696,60,0:0,0,4,16
chr1	147232555	.	T	C	719.01	PASS	AC=2;AF=1;AN=2;DP=1129;FS=0;MQ=60;MQRankSum=1.083;ReadPosRankSum=-0.758;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:823,81,0:0,0,14,13
chr1	147232740	.	C	T	226.59	PASS	AC=1;AF=0.65;AN=2;DP=994;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,10:36:99:168,0,723:9,17,5,5
chr1	147245324	.	T	C	980.89	PASS	AC=2;AF=1;AN=2;DP=1492;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1280,123,0:0,0,27,14
chr1	147245383	.	T	C	988.29	PASS	AC=1;AF=0.611;AN=2;DP=998;MQ=60;set=variant5-variant6-variant11-variant14-variant15-variant17-variant22-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:660,0,775:18,11,17,12
chr1	147245474	.	G	C	2084.55	PASS	AC=2;AF=1;AN=2;DP=2769;FS=0;MQ=60;MQRankSum=1.354;ReadPosRankSum=0.409;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2180,195,0:0,0,28,37
chr1	147245497	.	C	T	748.37	PASS	AC=1;AF=0.611;AN=2;DP=977;MQ=60;set=variant5-variant6-variant11-variant14-variant15-variant17-variant22-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,19:67:99:376,0,1169:22,26,6,13
chr1	147381397	.	GA	G,GAA	126.29	PASS	AC=0,1;AF=0.17,0.477;AN=2;DP=1927;MQ=60;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:39:21:2,4,16,17
chr1	147381444	.	A	C	116.07	PASS	AC=2;AF=0.756;AN=2;DP=930;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:59:564,59,0:0,0,8,12
chr1	147806559	.	C	T	1131.66	PASS	AC=1;AF=0.872;AN=2;DP=3970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:1428,0,1421:37,17,34,24
chr1	147806874	.	G	C	593.73	PASS	AC=1;AF=0.895;AN=2;DP=1423;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:758,0,669:4,17,2,20
chr1	147806880	.	T	C	1170.3	PASS	AC=2;AF=1;AN=2;DP=1241;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1636,117,0:0,0,4,33
chr1	147955425	.	C	T	1358.53	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0;FractionInformativeReads=1;MQ=41.76;MQRankSum=0.841;QD=13.86;ReadPosRankSum=-0.057;SOR=0.801;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:45,53:98:99:1387,0,1109:11,34,12,41
chr1	148008395	.	T	A	447.39	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=32.44;MQRankSum=0.111;QD=9.13;ReadPosRankSum=0.152;SOR=0.836;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:476,0,676:19,9,15,6
chr1	148009715	.	G	GGA	44.31	PASS	AC=1;AF=0.5;AN=2;DP=2810;set=filterInvariant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,54:113:99:1671,0,1866:25,34,26,28
chr1	148009846	.	CA	C	35.66	PASS	AC=1;AF=0.5;AN=2;DP=1661;set=filterInvariant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:991,0,1112:24,12,18,14
chr1	148010217	.	A	G	143.25	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=0;FractionInformativeReads=1;set=variant5-variant15-filterInvariant16-variant20-variant23-variant28-filterInvariant35-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:143,0,330:0,12,0,6
chr1	148010726	.	T	G	72.41	DRAGENHardSNP	AC=1;AF=0.561;AN=2;DP=375;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:170,0,138:5,0,8,0
chr1	148010911	.	G	A	3363.42	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=20112;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:222,331:553:99:6436,0,4580:113,109,164,167
chr1	148017629	.	C	T	141.1	PASS	AC=1;AF=0.5;AN=2;DP=5895;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:122,35:157:99:403,0,2787:53,69,15,20
chr1	148021700	.	G	A	346.74	PASS	AC=1;AF=0.557;AN=2;DP=2295;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:50,24:74:99:402,0,1156:24,26,14,10
chr1	148021837	.	T	C	64.64	PASS	AC=1;AF=0.56;AN=2;DP=359;FractionInformativeReads=1;set=variant2-filterInvariant3-variant4-variant5-variant7-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-filterInvariant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:21,4:25:99:105,0,1302:5,16,0,4
chr1	148021838	.	G	A	64.64	PASS	AC=1;AF=0.56;AN=2;DP=348;FractionInformativeReads=1;set=variant2-filterInvariant3-variant4-variant5-variant7-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-filterInvariant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:19,4:23:99:105,0,1302:5,14,0,4
chr1	148023129	.	C	G	36.14	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1843;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:132,24:156:99:134,0,3026:49,83,13,11
chr1	148023207	.	T	C	107.2	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=76;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:67:67,0,203:2,7,0,4
chr1	148023403	.	G	A	297.95	PASS	AC=1;AF=0.547;AN=2;DP=1302;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:664,0,593:23,4,25,6
chr1	148023509	.	G	A	457.93	PASS	AC=1;AF=0.534;AN=2;DP=2323;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,43:84:99:950,0,806:22,19,20,23
chr1	148025606	.	C	T	225.19	PASS	AC=1;AF=0.643;AN=2;DP=902;set=variant-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant13-filterInvariant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant36-filterInvariant37-filterInvariant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,11:45:99:146,0,1104:24,10,4,7
chr1	148252164	.	A	C	294.59	PASS	AC=1;AF=0.5;AN=2;DP=4092;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant9-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant24-filterInvariant25-variant26-filterInvariant27-variant28-variant29-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:108,19:127:99:123,0,3263:29,79,8,11
chr1	148341688	.	T	C	43.29	PASS	AC=2;AF=0.577;AN=2;DP=83;FractionInformativeReads=1;set=variant-filterInvariant5-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant19-variant21-filterInvariant23-filterInvariant28-filterInvariant32-filterInvariant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:167,15,0:0,0,1,4
chr1	148341812	.	G	A	150.43	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;set=filterInvariant5-filterInvariant11-variant12-variant15-filterInvariant16-filterInvariant19-variant24-filterInvariant28-filterInvariant29-filterInvariant32-filterInvariant35-variant40-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:127,0,157:3,2,0,5
chr1	148341981	.	T	C	34.95	PASS	AC=1;AF=0.5;AN=2;DP=3349;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant5-variant6-filterInvariant8-filterInvariant9-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant28-variant29-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:138,21:159:89:89,0,3021:70,68,11,10
chr1	148342369	.	A	G	1481.27	PASS	AC=1;AF=0.5;AN=2;DP=4917;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,50:187:99:1592,0,5714:96,41,28,22
chr1	148342373	.	C	T	1595.58	PASS	AC=1;AF=0.5;AN=2;DP=5234;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,50:193:99:1586,0,5781:102,41,28,22
chr1	148342446	.	A	T	1131.83	PASS	AC=1;AF=0.5;AN=2;DP=8043;set=variant-variant2-variant5-variant6-filterInvariant8-variant9-variant11-filterInvariant12-filterInvariant15-variant16-variant19-variant20-variant21-filterInvariant22-variant24-filterInvariant27-variant28-filterInvariant29-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:274,40:314:99:264,0,7498:154,120,15,25
chr1	148342488	.	T	C	1064.88	PASS	AC=1;AF=0.5;AN=2;DP=10305;set=variant-variant2-variant5-variant6-filterInvariant8-variant9-variant11-variant12-filterInvariant15-variant16-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant24-filterInvariant25-variant27-variant28-filterInvariant29-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:327,55:382:99:299,0,8977:167,160,27,28
chr1	148344491	.	T	A	38.95	PASS	AC=1;AF=0.5;AN=2;DP=2375;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,15:73:99:319,0,1968:47,11,14,1
chr1	148344521	.	C	T	364.79	PASS	AC=1;AF=0.5;AN=2;DP=3512;set=variant2-filterInvariant3-variant4-variant5-variant7-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant21-variant22-filterInvariant23-variant24-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-variant35-filterInvariant36-variant37-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,27:133:99:437,0,2970:79,27,24,3
chr1	148344564	.	T	C	323.21	PASS	AC=1;AF=0.5;AN=2;DP=7849;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:175,49:224:99:679,0,5139:100,75,33,16
chr1	148344615	.	G	GC	409.77	PASS	AC=1;AF=0.5;AN=2;DP=7286;set=filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant31-filterInvariant32-filterInvariant35-filterInvariant36-filterInvariant37-variant40-filterInvariant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:316,52:368:99:604,0,12583:157,159,21,31
chr1	148344624	.	T	C,A	1879.8	PASS	AC=1,0;AF=0.386,0.114;AN=2;DP=13312;set=Intersection	GT:DP:GQ:SB	0/1:296:99:84,71,63,78
chr1	148344660	.	G	C	153.13	PASS	AC=1;AF=0.5;AN=2;DP=10939;set=filterInvariant-filterInvariant2-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:303,56:359:99:676,0,8918:158,145,12,44
chr1	148344741	.	G	C	389.8	PASS	AC=1;AF=0.5;AN=2;DP=4428;set=variant-filterInvariant3-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant30-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant38-variant39-filterInvariant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:196,26:222:99:196,0,4729:97,99,5,21
chr1	148346783	.	A	G	40.81	PASS	AC=1;AF=0.5;AN=2;DP=968;set=filterInvariant6-variant8-filterInvariant10-variant12-filterInvariant14-variant15-filterInvariant16-filterInvariant17-variant19-variant20-filterInvariant21-variant22-variant27-variant29-variant30-variant33-variant34-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:40,14:54:99:390,0,2623:6,34,5,9
chr1	148346785	.	T	C	40.81	PASS	AC=1;AF=0.5;AN=2;DP=917;FractionInformativeReads=1;set=filterInvariant6-variant8-filterInvariant10-variant12-filterInvariant14-variant15-filterInvariant16-filterInvariant17-variant19-variant20-filterInvariant21-variant22-variant27-variant29-variant30-variant33-variant34-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:39,12:51:99:390,0,2623:6,33,4,8
chr1	148588978	.	C	A	70.68	DRAGENHardSNP	AC=1;AF=0.571;AN=2;DP=128;FS=0;FractionInformativeReads=1;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,12:14:8:240,0,8:1,1,6,6
chr1	148589005	.	G	A	234.26	DRAGENHardSNP	AC=2;AF=0.667;AN=2;DP=56;FS=0;FractionInformativeReads=1;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:2,12:14:7:262,7,0:1,1,6,6
chr1	148644408	.	A	G	3296.68	DRAGENHardSNP	AC=2;AF=0.86;AN=2;DP=2941;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:3956,473,0:0,0,85,73
chr1	148754858	.	T	C	78.21	PASS	AC=2;AF=0.833;AN=2;DP=42;FS=0;FractionInformativeReads=1;set=filterInvariant9-filterInvariant10-filterInvariant15-filterInvariant19-variant24-filterInvariant25-filterInvariant26-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:59,6,0:0,0,1,1
chr1	148754942	.	A	T	34.76	PASS	AC=1;AF=0.875;AN=2;DP=58;FS=0;FractionInformativeReads=1;set=filterInvariant9-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant23-filterInvariant24-filterInvariant26-filterInvariant31-filterInvariant33-filterInvariant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:12:113,0,12:0,1,0,5
chr1	148756363	.	A	G	376.77	DRAGENHardSNP	AC=1;AF=0.932;AN=2;DP=569;FS=0;FractionInformativeReads=1;MQRankSum=-3.418;ReadPosRankSum=-1.275;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:0,7:7:21:291,0,21:0,0,7,0
chr1	148756384	.	G	A	401.49	PASS	AC=1;AF=0.682;AN=2;DP=931;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:561,0,627:12,4,11,3
chr1	148756397	.	C	T	475.68	PASS	AC=1;AF=0.693;AN=2;DP=1080;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:565,0,788:15,7,11,5
chr1	148756432	.	C	A	628.5	PASS	AC=1;AF=0.705;AN=2;DP=1484;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:52,22:74:99:292,0,2227:35,17,11,11
chr1	148756448	.	G	A	2165.01	PASS	AC=1;AF=0.5;AN=2;DP=366;FractionInformativeReads=1;set=variant4-filterInvariant5-variant15-filterInvariant28-filterInvariant40-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:22,79:101:99:2076,0,676:11,11,52,27
chr1	148756499	.	A	G	3136.81	PASS	AC=1;AF=0.5;AN=2;DP=417;FractionInformativeReads=1;set=variant4-variant15-filterInvariant28-filterInvariant33-filterInvariant39-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,127:146:99:2984,0,256:7,12,73,54
chr1	148756515	.	A	C	446.32	DRAGENHardSNP	AC=1;AF=0.92;AN=2;DP=862;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:147,13:160:67:67,0,3234:77,70,3,10
chr1	148756607	.	G	T	2016.55	PASS	AC=2;AF=1;AN=2;DP=147;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant9-variant15-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant29-filterInvariant33-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1995,195,0:0,0,18,47
chr1	148756648	.	C	T	694.51	PASS	AC=2;AF=1;AN=2;DP=67;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant9-variant15-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant35-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1064,99,0:0,0,5,28
chr1	148756664	.	G	T	601.77	PASS	AC=2;AF=1;AN=2;DP=49;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant9-variant15-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant31-filterInvariant33-filterInvariant35-filterInvariant39-filterInvariant40-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,0,12
chr1	148756665	.	G	T	601.77	PASS	AC=2;AF=1;AN=2;DP=49;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant9-variant15-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant31-filterInvariant33-filterInvariant35-filterInvariant39-filterInvariant40-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,0,12
chr1	148756684	.	A	G	151.77	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=11;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:300,21,0:0,0,0,7
chr1	148756690	.	T	C	151.77	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=10;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:21:300,21,0:0,0,0,6
chr1	148873574	.	G	T	818.7	PASS	AC=1;AF=0.5;AN=2;DP=4281;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,27:101:99:526,0,1909:23,51,7,20
chr1	148882326	.	C	A	257.24	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2097;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:626,0,508:8,16,13,15
chr1	148889543	.	AT	A	692.74	PASS	AC=1;AF=0.5;AN=2;DP=3240;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,12:80:99:125,0,2571:41,27,9,3
chr1	148889551	.	TAA	T,AAA	1553.41	PASS	AC=1,0;AF=0.5,0.05;AN=2;DP=3572;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant2-variant22-variant24-variant25-variant26-variant27-variant28-variant-variant29-variant30-variant31-variant32-variant33-variant34-variant4-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:91:99:28,12,29,22
chr1	148889699	.	A	G	703.23	PASS	AC=1;AF=0.5;AN=2;DP=3655;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:65,33:98:99:724,0,1516:27,38,12,21
chr1	148889778	.	T	C	209.12	PASS	AC=1;AF=0.5;AN=2;DP=837;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:344,0,532:0,18,0,11
chr1	148903047	.	G	A	391.27	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=18554;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:425,158:583:99:2291,0,9407:235,190,72,86
chr1	148903089	.	G	A	253.14	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=10999;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:403,64:467:99:309,0,10549:205,198,26,38
chr1	148903118	.	C	T	289.77	PASS	AC=1;AF=0.5;AN=2;DP=12082;set=filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:345,59:404:99:466,0,9146:198,147,20,39
chr1	149279677	.	G	A	641.34	PASS	AC=1;AF=0.5;AN=2;DP=2144;set=variant-variant2-variant6-variant7-variant12-variant15-variant16-variant25-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:217,55:272:99:856,0,5747:99,118,23,32
chr1	149279739	.	C	T	2695.91	PASS	AC=1;AF=0.784;AN=2;DP=4104;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,65:157:99:1978,0,2300:43,49,3,62
chr1	149290370	.	G	A	175.91	PASS	AC=1;AF=0.5;AN=2;DP=1409;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:624,0,581:15,11,17,11
chr1	149290383	.	G	T	140.38	PASS	AC=1;AF=0.5;AN=2;DP=1422;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:592,0,587:15,11,17,12
chr1	149290881	.	C	T	293.82	PASS	AC=1;AF=0.5;AN=2;DP=3206;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-filterInvariant23-variant24-variant25-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,55:130:99:1134,0,1665:38,37,24,31
chr1	149376972	.	C	T	389.72	PASS	AC=1;AF=0.741;AN=2;DP=428;FractionInformativeReads=1;set=variant-variant4-variant6-filterInvariant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant21-variant23-filterInvariant24-variant25-variant28-filterInvariant29-filterInvariant32-variant34-variant35-variant36-variant37-filterInvariant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:71:71,0,224:1,7,0,3
chr1	149379237	.	A	G	135.76	PASS	AC=2;AF=1;AN=2;DP=700;FS=0;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-variant8-filterInvariant11-variant12-filterInvariant14-variant15-variant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant36-variant37-variant38-filterInvariant39-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1024,105,0:0,0,19,16
chr1	149665167	.	A	G	5595.19	PASS	AC=2;AF=0.977;AN=2;DP=9015;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:7280,743,0:0,0,136,112
chr1	149665214	.	T	G	2091.06	PASS	AC=1;AF=0.5;AN=2;DP=10796;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,132:292:99:2851,0,3680:87,73,67,65
chr1	149665383	.	A	G	1556.55	PASS	AC=1;AF=0.523;AN=2;DP=6707;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:93,68:161:99:1619,0,2281:28,65,19,49
chr1	149675876	.	A	G	89.23	PASS	AC=2;AF=1;AN=2;DP=206;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant19-variant20-variant21-variant22-variant24-filterInvariant25-filterInvariant26-filterInvariant28-filterInvariant30-variant31-variant33-filterInvariant34-filterInvariant35-variant36-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:298,33,0:0,0,7,4
chr1	149676075	.	G	A	71.06	PASS	AC=2;AF=0.987;AN=2;DP=174;FractionInformativeReads=1;MQRankSum=0.533;ReadPosRankSum=-1.381;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:174,18,0:0,0,6,0
chr1	149676401	.	A	G	429.07	PASS	AC=1;AF=0.5;AN=2;DP=8607;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:120,114:234:99:2755,0,2916:48,72,36,78
chr1	149764685	.	G	C	1745.92	PASS	AC=1;AF=0.5;AN=2;DP=1233;set=variant13-variant15-variant19-variant21-variant23-variant25-variant30-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:106,80:186:99:1915,0,2379:52,54,42,38
chr1	149783886	.	C	T	4015.95	PASS	AC=1;AF=0.563;AN=2;DP=1909;set=variant15-variant19-variant21-variant23-variant25-variant30-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:132,152:284:99:4044,0,3285:52,80,52,100
chr1	149784689	.	CCCA	C	735.54	PASS	AC=1;AF=0.563;AN=2;DP=255;set=variant15-variant19-variant21-variant23-variant25-variant30-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:773,0,557:13,0,19,1
chr1	149785120	.	C	A	33.65	PASS	AC=1;AF=0.5;AN=2;DP=4616;FractionInformativeReads=1;set=filterInvariant-variant4-variant5-variant8-variant9-variant13-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-filterInvariant32-variant34-variant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:207,28:235:99:536,0,50085:116,91,14,14
chr1	149785132	.	C	G	848.55	PASS	AC=1;AF=0.5;AN=2;DP=4648;FractionInformativeReads=1;set=variant4-variant5-variant8-variant9-variant13-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-filterInvariant32-variant34-filterInvariant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:213,28:241:99:517,0,58355:116,97,14,14
chr1	149785138	.	C	G	811.67	PASS	AC=1;AF=0.5;AN=2;DP=4703;FractionInformativeReads=1;set=variant4-variant5-variant8-variant9-variant13-filterInvariant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-filterInvariant32-filterInvariant34-filterInvariant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:216,28:244:99:486,0,63387:120,96,14,14
chr1	149785147	.	C	G	703.46	PASS	AC=1;AF=0.5;AN=2;DP=4717;FractionInformativeReads=1;set=variant4-variant5-filterInvariant8-variant9-variant13-filterInvariant15-filterInvariant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-filterInvariant30-filterInvariant32-filterInvariant34-filterInvariant35-variant36-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:226,28:254:99:474,0,69048:122,104,14,14
chr1	149785162	.	C	A	538.51	PASS	AC=1;AF=0.5;AN=2;DP=4441;FractionInformativeReads=1;set=filterInvariant4-variant5-filterInvariant8-filterInvariant9-variant13-filterInvariant15-filterInvariant16-filterInvariant18-variant19-variant22-variant23-variant24-variant25-variant30-filterInvariant32-filterInvariant34-filterInvariant35-variant36-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:246,27:273:99:360,0,77665:134,112,13,14
chr1	149785165	.	T	C	508.56	PASS	AC=1;AF=0.5;AN=2;DP=4428;FractionInformativeReads=1;set=filterInvariant4-variant5-filterInvariant8-filterInvariant9-variant13-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-variant22-variant23-variant24-filterInvariant25-variant30-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:238,25:263:99:351,0,76527:129,109,11,14
chr1	149856350	.	C	T	417.66	PASS	AC=1;AF=0.583;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:446,0,631:5,14,8,9
chr1	149856720	.	C	T	473.84	PASS	AC=1;AF=0.583;AN=2;DP=200;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:502,0,535:11,9,10,9
chr1	149871002	.	G	A	825.87	PASS	AC=1;AF=0.583;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:854,0,810:10,6,15,7
chr1	149871003	.	C	T	825.87	PASS	AC=1;AF=0.583;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:854,0,810:10,6,15,7
chr1	149871065	.	G	T	474.83	PASS	AC=1;AF=0.556;AN=2;DP=627;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant19-variant21-variant25-variant30-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:941,0,904:20,17,23,13
chr1	149871783	.	C	A	3501.96	PASS	AC=1;AF=0.5;AN=2;DP=293;FS=0.886;FractionInformativeReads=1;MQ=60;MQRankSum=1.81;QD=11.95;ReadPosRankSum=-0.246;SOR=0.627;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:144,149:293:99:3530,0,3531:69,75,74,75
chr1	149871905	.	G	C	2470.1	PASS	AC=1;AF=0.583;AN=2;DP=1050;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:90,92:182:99:2498,0,2529:40,50,44,48
chr1	149876124	.	T	C	1005.5	PASS	AC=1;AF=0.5;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant14-variant15-variant16-variant28	GT:AD:DP:GQ:PL:SB	0/1:43,29:72:99:624,0,1041:22,21,15,14
chr1	149880863	.	A	G	1738.71	PASS	AC=1;AF=0.5;AN=2;DP=1631;MQ=60;set=variant8-variant10-variant15-variant19-variant21-variant25-variant30-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:108,107:215:99:2460,0,2518:50,58,48,59
chr1	149881173	.	A	C	1361.83	PASS	AC=1;AF=0.5;AN=2;DP=919;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant19-variant21-variant25-variant30-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,61:109:99:2395,0,2242:18,30,24,37
chr1	149881183	.	C	T	1274.29	PASS	AC=1;AF=0.5;AN=2;DP=749;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant19-variant21-variant25-variant30-variant34-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,57:94:99:2282,0,1985:14,23,24,33
chr1	149885583	.	A	G	1455.83	PASS	AC=2;AF=0.919;AN=2;DP=2151;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1385,126,0:0,0,25,17
chr1	149885800	.	G	A	247.12	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant19-variant21-variant25-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:450,0,189:2,6,8,10
chr1	149889339	.	C	T	802.17	PASS	AC=1;AF=0.5;AN=2;DP=531;MQ=60;set=variant4-variant6-variant11-variant14-variant15-variant16-variant21-variant28-variant31	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:323,0,623:9,15,5,9
chr1	149889489	.	A	G	268.18	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:296,0,130:0,4,4,7
chr1	149897528	.	T	A	684.91	PASS	AC=1;AF=0.5;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:713,0,652:18,7,18,7
chr1	149897966	.	T	G	1004.21	PASS	AC=1;AF=0.5;AN=2;DP=486;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:48,46:94:99:1032,0,1133:18,30,20,26
chr1	149898951	.	G	C	497.73	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant19-variant21-variant25-variant30-variant34-variant39	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:320,0,484:4,10,2,7
chr1	149899885	.	A	G	714.92	PASS	AC=1;AF=0.5;AN=2;DP=212;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:12,23:35:99:743,0,332:4,8,4,19
chr1	149899948	.	G	A	196.72	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:225,0,213:2,7,2,6
chr1	149900264	.	G	C	245.11	PASS	AC=1;AF=0.5;AN=2;DP=199;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:273,0,386:7,6,2,8
chr1	149900610	.	T	C	3114.03	PASS	AC=1;AF=0.5;AN=2;DP=1140;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:103,123:226:99:3142,0,2660:55,48,62,61
chr1	149902588	.	A	G	261.4	PASS	AC=1;AF=0.5;AN=2;DP=178;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:290,0,557:11,13,5,6
chr1	149902998	.	G	T	699.05	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:727,0,801:17,13,16,10
chr1	149903122	.	G	C	838.68	PASS	AC=1;AF=0.5;AN=2;DP=504;MQ=60;set=variant13-variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:30,53:83:99:1474,0,771:16,14,28,25
chr1	149906167	.	T	G	1236.63	PASS	AC=1;AF=0.5;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1265,0,1088:27,16,29,20
chr1	149906413	.	T	C	1850.51	PASS	AC=1;AF=0.589;AN=2;DP=3398;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,65:160:99:1698,0,2434:35,60,25,40
chr1	149907172	.	CA	C	1288.75	PASS	AC=1;AF=0.5;AN=2;DP=483;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:1326,0,1925:21,23,21,15
chr1	149907183	.	C	A	1444.22	PASS	AC=1;AF=0.5;AN=2;DP=511;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:44,39:83:99:1472,0,1905:19,25,24,15
chr1	149907258	.	C	T	2009.32	PASS	AC=1;AF=0.5;AN=2;DP=739;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:76,80:156:99:2038,0,2061:41,35,46,34
chr1	149907276	.	A	G	2136.82	PASS	AC=1;AF=0.5;AN=2;DP=837;MQ=60;set=variant15-variant19-variant21-variant25-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:86,87:173:99:2165,0,2374:49,37,48,39
chr1	149908108	.	A	G	1964.94	PASS	AC=1;AF=0.571;AN=2;DP=2602;MQ=60;set=variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,60:131:99:1655,0,1766:28,43,18,42
chr1	149912782	.	A	G	1632.21	PASS	AC=2;AF=1;AN=2;DP=2685;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2149,208,0:0,0,41,29
chr1	149914683	.	G	A	3473.92	PASS	AC=2;AF=1;AN=2;DP=6439;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:4842,509,0:0,0,92,78
chr1	149922308	.	GT	G	158.91	PASS	AC=1;AF=0.529;AN=2;DP=247;MQ=60;set=variant9-variant10-variant13-variant15-variant19-variant20-variant21-variant25-variant28-variant33-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:98:239,0,98:0,4,1,7
chr1	149943157	.	G	A	2699.25	PASS	AC=1;AF=0.5;AN=2;DP=1458;MQ=60;set=variant15-variant19-variant21-variant25-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:97,117:214:99:2727,0,2276:48,49,64,53
chr1	149982478	.	C	T	811.91	PASS	AC=1;AF=0.5;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant21-variant25-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:840,0,682:16,11,20,9
chr1	149982626	.	A	G	370.46	PASS	AC=1;AF=0.528;AN=2;DP=787;MQ=60;set=variant9-variant10-variant13-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant33-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:958,0,687:11,19,13,24
chr1	150039678	.	G	A	2164.58	PASS	AC=1;AF=0.821;AN=2;DP=3541;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,75:116:99:1663,0,958:24,17,36,39
chr1	150049934	.	A	G	272.9	PASS	AC=1;AF=0.588;AN=2;DP=463;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:659,0,476:5,12,8,15
chr1	150049982	.	C	T	43.47	PASS	AC=1;AF=0.607;AN=2;DP=175;MQ=60;set=variant4-variant8-variant9-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:415,0,255:1,7,2,10
chr1	150053397	.	CT	C	780.07	PASS	AC=1;AF=0.5;AN=2;DP=127;MQ=60;set=variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:817,0,992:28,15,21,14
chr1	150117533	.	G	A	5261.83	PASS	AC=2;AF=1;AN=2;DP=6264;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:6426,564,0:0,0,43,145
chr1	150122369	.	A	G	1375.12	PASS	AC=1;AF=0.607;AN=2;DP=901;MQ=60;set=variant4-variant8-variant9-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,56:88:99:1285,0,720:16,16,28,28
chr1	150122493	.	T	C	1498.86	PASS	AC=2;AF=1;AN=2;DP=2214;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1487,159,0:0,0,23,30
chr1	150128425	.	C	T	832.5	PASS	AC=1;AF=0.821;AN=2;DP=1261;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,27:43:99:860,0,427:6,10,6,21
chr1	150129267	.	G	A	926.53	PASS	AC=2;AF=1;AN=2;DP=2060;FS=0;MQ=60;MQRankSum=1.54;ReadPosRankSum=0.385;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2007,177,0:0,0,15,44
chr1	150130982	.	G	GC	2010.79	PASS	AC=1;AF=0.594;AN=2;DP=2044;MQ=60;set=variant4-variant8-variant9-variant10-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,92:158:99:3776,0,2745:46,20,66,26
chr1	150130983	.	G	T	2019.81	PASS	AC=1;AF=0.594;AN=2;DP=2097;MQ=60;set=variant4-variant8-variant9-variant10-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,96:164:99:3776,0,2745:46,22,69,27
chr1	150192506	.	CAAA	CAA,C,CA,CAAAA	323.52	PASS	AC=0,0,1,0;AF=0.136,0.091,0.303,0.015;AN=2;DP=4148;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-filterInvariant15-filterInvariant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:73:99:16,34,11,12
chr1	150193165	.	G	A	220.11	PASS	AC=1;AF=0.556;AN=2;DP=478;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:485,0,494:1,14,3,14
chr1	150199039	.	CTCCTCT	C	1169.6	PASS	AC=1;AF=0.565;AN=2;DP=2575;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant12-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,58:136:99:2165,0,3020:33,45,26,32
chr1	150199123	.	G	T	2096.96	PASS	AC=2;AF=0.721;AN=2;DP=2909;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3960,392,0:0,0,57,74
chr1	150201305	.	A	AT	667.17	PASS	AC=1;AF=0.567;AN=2;DP=766;MQ=60;set=variant4-variant8-variant9-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:395,0,415:13,6,12,6
chr1	150203082	.	C	CT	199.81	PASS	AC=1;AF=0.615;AN=2;DP=230;set=variant2-variant3-variant7-variant9-filterInvariant15-variant17-variant20-variant22-variant23-variant24-variant27-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:72:72,0,137:1,6,0,5
chr1	150203984	.	AT	A	106.65	PASS	AC=1;AF=0.571;AN=2;DP=230;set=variant2-variant3-variant6-variant7-variant9-variant10-variant12-variant15-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:203,0,244:6,1,6,0
chr1	150206772	.	TAA	TA,TAAA,T,TAAAA	66.52	PASS	AC=1,0,0,0;AF=0.435,0.022,0.022,0.022;AN=2;DP=346;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant15-variant17-variant18-variant19-variant24-variant25-filterInvariant26-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant40-variant43	GT:DP:GQ:SB	0/1:16:68:5,1,8,2
chr1	150234282	.	T	G	415.98	PASS	AC=1;AF=0.625;AN=2;DP=273;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant22-variant23-variant24-variant26-variant29-variant31-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,16:20:99:525,0,123:3,1,13,3
chr1	150236314	.	CT	C,CTT	125.59	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=839;set=variant3-filterInvariant4-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-variant15-variant17-variant20-variant24-filterInvariant25-variant26-variant28-filterInvariant29-variant31-filterInvariant32-variant35-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:24:99:1,9,1,13
chr1	150238699	.	T	C	1244.84	PASS	AC=1;AF=0.583;AN=2;DP=922;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1054,0,1146:22,18,17,21
chr1	150241230	.	G	T	2199.02	PASS	AC=1;AF=0.563;AN=2;DP=1542;MQ=60;set=variant7-variant9-variant10-variant12-variant15-variant17-variant23-variant42	GT:AD:DP:GQ:PL:SB	0/1:99,103:202:99:2473,0,2485:40,59,39,64
chr1	150249101	.	C	A	583.17	PASS	AC=2;AF=0.729;AN=2;DP=1925;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2623,233,0:0,0,20,58
chr1	150252329	.	G	A	395.02	PASS	AC=1;AF=0.641;AN=2;DP=467;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:159,0,111:1,3,2,4
chr1	150252984	.	T	G	276.69	PASS	AC=2;AF=0.769;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:619,54,0:0,0,11,7
chr1	150255587	.	T	C	2501.26	PASS	AC=2;AF=0.756;AN=2;DP=2344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,70:72:99:2259,167,0:1,1,41,29
chr1	150258838	.	C	G	2945.71	PASS	AC=2;AF=0.75;AN=2;DP=3634;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3277,306,0:0,0,66,36
chr1	150259400	.	A	C	1006.91	PASS	AC=1;AF=0.633;AN=2;DP=2578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1693,0,1385:19,31,24,33
chr1	150266338	.	T	A	986.04	PASS	AC=1;AF=0.613;AN=2;DP=2543;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,65:118:99:1625,0,1132:30,23,40,25
chr1	150266559	.	A	C	862.63	PASS	AC=1;AF=0.579;AN=2;DP=1320;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:936,0,996:14,24,21,16
chr1	150276429	.	G	A	2649.53	PASS	AC=1;AF=0.645;AN=2;DP=1764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,21:67:99:435,0,1247:17,29,7,14
chr1	150276461	.	G	A	690.23	PASS	AC=1;AF=0.629;AN=2;DP=1174;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:476,0,985:13,24,8,14
chr1	150277387	.	T	C	402.01	PASS	AC=1;AF=0.645;AN=2;DP=654;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:279,0,438:12,3,8,3
chr1	150281202	.	A	C	1765.6	PASS	AC=2;AF=0.8;AN=2;DP=2317;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2715,216,0:0,0,62,10
chr1	150281343	.	C	G,T	2606.33	PASS	AC=0,1;AF=0.025,0.55;AN=2;DP=4738;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:DP:GQ:SB	0/2:264:99:65,71,57,71
chr1	150281501	.	A	C	853.77	PASS	AC=2;AF=0.788;AN=2;DP=763;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1136,81,0:0,0,1,26
chr1	150284311	.	C	T	849.83	PASS	AC=1;AF=0.542;AN=2;DP=794;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:749,0,1327:17,27,14,16
chr1	150297334	.	CT	C,CTT	132.08	PASS	AC=1,0;AF=0.483,0.017;AN=2;DP=1036;set=variant-variant4-variant5-variant8-variant10-variant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-variant21-variant22-filterInvariant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant33-variant35-filterInvariant36-variant37-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:40:68:18,13,6,3
chr1	150298192	.	G	A	567.43	PASS	AC=1;AF=0.542;AN=2;DP=406;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:412,0,522:13,3,10,7
chr1	150300727	.	T	C	673.68	PASS	AC=1;AF=0.676;AN=2;DP=1936;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:688,0,795:20,11,19,10
chr1	150301006	.	ATTTT	ATT,ATTTTT,A,AT,ATTTTTTTTT,ATTT,ATTTTTTTTTT	295.04	PASS	AC=0,0,0,0,1,0,0;AF=0.188,0.021,0.042,0.125,0.042,0.083,0.021;AN=2;DP=1105;set=variant4-filterInvariant7-variant8-variant10-variant12-variant14-variant15-variant19-variant21-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-filterInvariant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/5:30:99:2,9,8,11
chr1	150307270	.	T	G	164.58	PASS	AC=1;AF=0.681;AN=2;DP=531;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:169,0,172:4,2,5,0
chr1	150310549	.	CA	CAA,C	44.33	PASS	AC=0,1;AF=0.107,0.411;AN=2;DP=1099;set=filterInvariant2-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-filterInvariant19-variant20-variant21-variant22-filterInvariant23-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:DP:GQ:SB	0/2:34:99:13,3,11,7
chr1	150319081	.	T	A	777.19	PASS	AC=1;AF=0.579;AN=2;DP=1528;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,59:124:99:1429,0,1788:23,42,26,33
chr1	150325231	.	A	G	360.33	PASS	AC=1;AF=0.542;AN=2;DP=477;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,19:56:99:426,0,995:17,20,9,10
chr1	150337289	.	G	T	1219.14	PASS	AC=1;AF=0.542;AN=2;DP=1222;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,58:122:99:1303,0,1530:39,25,36,22
chr1	150389964	.	GA	G	367.31	PASS	AC=1;AF=0.676;AN=2;DP=1250;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:468,0,321:14,1,14,6
chr1	150413940	.	G	T	2537.28	PASS	AC=1;AF=0.676;AN=2;DP=6123;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,114:216:99:3165,0,2815:58,44,57,57
chr1	150415631	.	T	G	587.86	PASS	AC=1;AF=0.579;AN=2;DP=879;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:988,0,827:21,7,26,11
chr1	150416913	.	A	G	268.37	PASS	AC=1;AF=0.568;AN=2;DP=669;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:846,0,756:3,22,3,22
chr1	150429944	.	A	G	970.35	PASS	AC=1;AF=0.542;AN=2;DP=1480;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,72:125:99:1947,0,1338:24,29,33,39
chr1	150432870	.	GGTT	G,GGTTGTT	143.38	PASS	AC=0,2;AF=0.464,0.232;AN=2;DP=319;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/2:11:33:0,0,2,9
chr1	150437215	.	A	G	780.19	PASS	AC=1;AF=0.579;AN=2;DP=1676;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,65:112:99:1587,0,1078:18,29,25,40
chr1	150446032	.	TAA	TAAA,TA,TAAAAAAAAAAA,TAAAAAAAAAA,T,TAAAAAA,TAAAAAAAAAAAA	166.75	PASS	AC=0,0,0,1,0,0,0;AF=0.043,0.329,0.086,0.043,0.014,0.014,0.014;AN=2;DP=4708;set=filterInvariant-variant2-variant3-variant6-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant22-filterInvariant23-variant24-variant26-variant27-filterInvariant28-variant29-variant31-variant32-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/4:74:99:26,36,1,11
chr1	150447269	.	G	A	3482.62	PASS	AC=1;AF=0.676;AN=2;DP=8292;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,155:301:99:3908,0,3744:69,77,71,84
chr1	150448019	.	G	A	9513.43	PASS	AC=2;AF=1;AN=2;DP=11034;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,303:304:99:9124,899,0:1,0,150,153
chr1	150448370	.	AGTGT	A	1759.72	PASS	AC=1;AF=0.579;AN=2;DP=3289;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,113:236:99:4319,0,6412:40,83,35,78
chr1	150448666	.	C	G	1101.98	PASS	AC=1;AF=0.579;AN=2;DP=1618;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,37:91:99:880,0,1243:30,24,20,17
chr1	150448707	.	T	C	824.09	PASS	AC=1;AF=0.579;AN=2;DP=1337;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,33:85:99:837,0,1363:21,31,14,19
chr1	150448766	.	G	C	596.48	PASS	AC=1;AF=0.579;AN=2;DP=823;MQ=60;set=variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:510,0,821:11,18,10,10
chr1	150460168	.	A	G	225.69	PASS	AC=1;AF=0.662;AN=2;DP=533;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:148,0,316:8,3,2,3
chr1	150461801	.	A	G	2602.63	PASS	AC=1;AF=0.542;AN=2;DP=3100;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:169,150:319:99:3728,0,4138:79,90,75,75
chr1	150461873	.	G	T	2538.03	PASS	AC=1;AF=0.542;AN=2;DP=2418;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:127,118:245:99:2822,0,3062:56,71,50,68
chr1	150463772	.	C	G	1554.53	PASS	AC=1;AF=0.583;AN=2;DP=1004;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:808,0,682:17,14,21,12
chr1	150468842	.	A	G	1334.76	PASS	AC=1;AF=0.583;AN=2;DP=615;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:551,0,486:13,7,16,6
chr1	150470296	.	G	A	2048.39	PASS	AC=1;AF=0.583;AN=2;DP=885;set=variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:616,0,498:8,12,6,15
chr1	150471157	.	T	A	2655.12	PASS	AC=1;AF=0.583;AN=2;DP=1274;MQ=60;set=variant2-variant15-variant24-variant29-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:118,137:255:99:3165,0,2726:51,67,69,68
chr1	150471848	.	A	AT	45.77	PASS	AC=1;AF=0.667;AN=2;DP=650;MQ=60;set=variant-filterInvariant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:103,0,109:1,4,1,3
chr1	150482255	.	A	G	1846.34	PASS	AC=1;AF=0.542;AN=2;DP=1644;MQ=60;set=variant8-variant9-variant11-variant15-variant20-variant21-variant28-variant30-variant32-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,82:174:99:2209,0,2438:34,58,26,56
chr1	150483236	.	A	C	72.36	PASS	AC=1;AF=0.676;AN=2;DP=797;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:366,0,280:8,3,10,0
chr1	150483840	.	C	T	440.81	PASS	AC=1;AF=0.667;AN=2;DP=2009;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:927,0,806:9,20,17,15
chr1	150484395	.	ACC	A	1319.24	PASS	AC=1;AF=0.681;AN=2;DP=2665;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1468,0,1765:24,25,16,26
chr1	150484555	.	C	G	105.45	PASS	AC=1;AF=0.671;AN=2;DP=721;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:384,0,261:2,7,5,7
chr1	150485566	.	T	G	141.61	PASS	AC=1;AF=0.676;AN=2;DP=805;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:628,0,261:6,3,16,3
chr1	150485571	.	T	C	536.62	PASS	AC=2;AF=1;AN=2;DP=1036;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1357,99,0:0,0,25,8
chr1	150522242	.	T	C	288.82	PASS	AC=2;AF=0.735;AN=2;DP=818;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:820,75,0:0,0,14,11
chr1	150522471	.	C	CTG	682.4	PASS	AC=2;AF=0.735;AN=2;DP=1839;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:3491,235,0:0,0,45,32
chr1	150526044	.	G	C	467.63	PASS	AC=1;AF=0.6;AN=2;DP=4311;MQ=60;set=variant-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,77:160:99:1901,0,2187:35,48,39,38
chr1	150526406	.	C	T	2325.74	PASS	AC=1;AF=0.595;AN=2;DP=3515;MQ=60;set=variant-variant4-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,91:176:99:2130,0,2302:41,44,43,48
chr1	150528090	.	G	GACAC	694.07	PASS	AC=1;AF=0.645;AN=2;DP=3087;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,43:77:99:1637,0,1305:15,19,20,23
chr1	150528118	.	T	TACAC,TACACAC	633.13	PASS	AC=1,0;AF=0.632,0.013;AN=2;DP=2424;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:56:99:10,16,14,16
chr1	150528175	.	GCA	G	248.46	PASS	AC=1;AF=0.645;AN=2;DP=1118;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:515,0,462:3,9,6,8
chr1	150528208	.	C	T	159.39	PASS	AC=1;AF=0.607;AN=2;DP=504;FractionInformativeReads=1;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:368,0,164:2,5,6,7
chr1	150529322	.	T	TAA	1986.04	PASS	AC=2;AF=0.92;AN=2;DP=2499;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3169,214,0:0,0,31,38
chr1	150531008	.	T	C	2370.84	PASS	AC=2;AF=0.92;AN=2;DP=8443;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6525,617,0:0,0,123,83
chr1	150531050	.	G	A	3150.1	PASS	AC=1;AF=0.86;AN=2;DP=9670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,114:245:99:2715,0,3097:71,60,66,48
chr1	150531170	.	C	T	6137.71	PASS	AC=2;AF=1;AN=2;DP=9825;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,252:252:99:7782,755,0:0,0,110,142
chr1	150531380	.	T	C	723.51	PASS	AC=1;AF=0.643;AN=2;DP=1929;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:647,0,656:14,12,11,13
chr1	150547747	.	G	A	780.26	PASS	AC=2;AF=0.677;AN=2;DP=1265;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1452,114,0:0,0,9,29
chr1	150548887	.	C	CCTAT	9352.87	PASS	AC=2;AF=1;AN=2;DP=7788;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:9956,667,0:0,0,121,99
chr1	150550019	.	T	TA	1632.1	PASS	AC=2;AF=1;AN=2;DP=2253;FS=0;MQ=60;MQRankSum=1.555;ReadPosRankSum=1.466;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1520,123,0:0,0,11,30
chr1	150552263	.	GGCCGGGGCCGGGGCCTGA	G	521.99	PASS	AC=1;AF=0.75;AN=2;DP=420;set=variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:157,0,1342:3,5,4,4
chr1	150595537	.	G	T	264	PASS	AC=1;AF=0.536;AN=2;DP=325;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant9-variant15-variant23-variant25-variant27-variant29-variant30-variant33-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:578,0,242:3,5,7,11
chr1	150600181	.	C	T	645.9	PASS	AC=2;AF=0.73;AN=2;DP=611;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:680,63,0:0,0,7,14
chr1	150618961	.	T	G	7420.88	PASS	AC=2;AF=0.662;AN=2;DP=7361;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,258:258:99:8182,774,0:0,0,147,111
chr1	150619602	.	T	C	9747.98	PASS	AC=2;AF=1;AN=2;DP=11021;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,308:308:99:9986,921,0:0,0,143,165
chr1	150676485	.	T	C	473.11	PASS	AC=2;AF=0.66;AN=2;DP=319;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:505,42,0:0,0,11,3
chr1	150676674	.	TA	T,TAA	112.02	PASS	AC=1,0;AF=0.47,0.03;AN=2;DP=1334;MQ=60;set=variant-filterInvariant2-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-filterInvariant29-variant32-variant33-variant34-variant36-filterInvariant37-variant38-filterInvariant39	GT:DP:GQ:SB	0/1:42:99:14,12,8,8
chr1	150686633	.	A	T	389.42	PASS	AC=1;AF=0.579;AN=2;DP=662;MQ=60;set=variant-variant2-variant4-filterInvariant8-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant30-variant34-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,32:51:99:673,0,411:7,12,14,18
chr1	150687296	.	C	T	147.41	PASS	AC=2;AF=1;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant13-variant15-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,1,4
chr1	150737220	.	A	G	1327.1	PASS	AC=1;AF=0.5;AN=2;DP=875;MQ=60;set=variant11-variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:80,91:171:99:2314,0,1982:39,41,44,47
chr1	150738197	.	C	T	1693.89	PASS	AC=2;AF=0.672;AN=2;DP=1149;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1989,171,0:0,0,44,13
chr1	150771703	.	T	C	3074.51	PASS	AC=2;AF=0.977;AN=2;DP=4453;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3310,326,0:0,0,64,45
chr1	150779755	.	C	T	3709.04	PASS	AC=2;AF=0.977;AN=2;DP=5264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4923,475,0:0,0,79,80
chr1	150782110	.	CAAAAAAAAAAAAAA	C,CAAAAAAAAAAAA,CAAAAAA,CAAAA,CAAAAAAAAAAAAA,CAAAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAA	164.33	PASS	AC=0,0,0,0,0,1,0,0;AF=0.074,0.044,0.103,0.324,0.029,0.044,0.059,0.015;AN=2;DP=384;set=variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/6:12:99:6,2,4,0
chr1	150782797	.	C	T	2343.52	PASS	AC=1;AF=0.563;AN=2;DP=3188;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant15-variant23-variant25-variant27-variant29-variant30-variant33-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:131,108:239:99:2565,0,3487:60,71,51,57
chr1	150783108	.	TA	T	614.35	PASS	AC=1;AF=0.5;AN=2;DP=5596;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,32:141:99:261,0,1752:53,56,18,14
chr1	150783934	.	GCACA	GCACACACA,GCACACACACA,G,GCGCACACACA,GCACACACACACACACA,GCACACA,GCACACACACACA,GCACACACACACACA	1292.78	PASS	AC=0,2,0,0,0,0,0,0;AF=0.42,0.409,0.011,0.011,0.023,0.011,0.034,0.011;AN=2;DP=1941;set=Intersection	GT:DP:GQ:SB	2/2:36:76:1,1,12,22
chr1	150790289	.	CAA	CA,CAAA,C,CAAAA	62.91	PASS	AC=1,0,0,0;AF=0.129,0.355,0.016,0.032;AN=2;DP=664;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:22:94:8,6,8,0
chr1	150801466	.	T	C	1317.92	PASS	AC=2;AF=0.953;AN=2;DP=1515;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1698,158,0:0,0,34,19
chr1	150804401	.	GA	G,GAA	408.76	PASS	AC=1,0;AF=0.211,0.329;AN=2;DP=1531;set=variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant31-filterInvariant33-filterInvariant34-variant35-variant36-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:47:99:9,16,10,12
chr1	150849071	.	ACC	A,AC,ACCC	540.37	PASS	AC=1,1,0;AF=0.239,0.67,0.045;AN=2;DP=1530;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:31:99:0,0,13,18
chr1	150914922	.	CA	C,CAA,CAAA	54.99	PASS	AC=1,0,0;AF=0.114,0.409,0.023;AN=2;DP=443;MQ=60;set=variant-variant3-filterInvariant4-variant5-variant7-variant10-variant12-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant40-filterInvariant42-variant43	GT:DP:GQ:SB	0/1:24:99:11,5,5,3
chr1	150937771	.	T	A	2127.11	PASS	AC=2;AF=0.977;AN=2;DP=2981;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2600,251,0:0,0,38,46
chr1	150938616	.	G	A	1902.61	PASS	AC=2;AF=1;AN=2;DP=3369;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3124,303,0:0,0,56,45
chr1	150940625	.	T	G	1001.87	PASS	AC=1;AF=0.538;AN=2;DP=1556;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant14-variant15-variant18-variant21-variant22-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:64,69:133:99:1748,0,1673:36,28,39,30
chr1	150944541	.	A	G	277.7	PASS	AC=2;AF=1;AN=2;DP=605;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=1.349;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:501,45,0:0,0,3,12
chr1	150954671	.	G	A	830.36	PASS	AC=1;AF=0.536;AN=2;DP=1249;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant14-variant15-variant18-variant21-variant22-variant28-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,56:122:99:1558,0,1751:40,26,37,19
chr1	150968188	.	A	G	57.97	PASS	AC=2;AF=0.989;AN=2;DP=274;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.731;ReadPosRankSum=-0.731;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:271,21,0:0,0,2,5
chr1	150969567	.	A	G	2281.78	PASS	AC=2;AF=0.989;AN=2;DP=4069;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3569,342,0:0,0,54,60
chr1	150969592	.	C	T	1297.74	PASS	AC=1;AF=0.5;AN=2;DP=395;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1326,0,1526:29,31,23,28
chr1	150969992	.	T	C	4514.47	PASS	AC=1;AF=0.932;AN=2;DP=8272;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:116,113:229:99:2795,0,2721:58,58,57,56
chr1	150970577	.	G	T	1536.64	PASS	AC=2;AF=0.989;AN=2;DP=3344;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2719,247,0:0,0,53,30
chr1	150970836	.	T	A	1233.91	PASS	AC=1;AF=0.677;AN=2;DP=1453;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:776,0,767:6,21,10,19
chr1	150972538	.	G	A	2595.09	PASS	AC=2;AF=1;AN=2;DP=2495;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1675,129,0:0,0,12,31
chr1	150972539	.	T	G	595.82	PASS	AC=1;AF=0.5;AN=2;DP=236;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:624,0,486:6,14,6,17
chr1	150973514	.	G	A	1199.25	PASS	AC=1;AF=0.845;AN=2;DP=1175;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:403,0,365:9,6,10,5
chr1	150974081	.	C	T	770.64	PASS	AC=1;AF=0.5;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:799,0,1056:23,12,18,13
chr1	150974162	.	G	A	3291.53	PASS	AC=2;AF=0.814;AN=2;DP=5241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,103:104:99:3177,301,0:0,1,54,49
chr1	150974971	.	T	A	1427.78	PASS	AC=1;AF=0.5;AN=2;DP=511;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:57,62:119:99:1456,0,1479:30,27,32,30
chr1	150975108	.	T	C	3128.44	PASS	AC=2;AF=0.932;AN=2;DP=4944;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4600,420,0:0,0,83,57
chr1	150981620	.	C	T	328.45	PASS	AC=2;AF=1;AN=2;DP=455;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:553,42,0:0,0,1,13
chr1	150990825	.	A	G	506.5	PASS	AC=1;AF=0.791;AN=2;DP=613;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:267,0,221:5,1,7,2
chr1	150990913	.	G	C	970.52	PASS	AC=1;AF=0.5;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:999,0,1010:24,10,27,7
chr1	150991221	.	A	G	935.82	PASS	AC=1;AF=0.577;AN=2;DP=798;MQ=60;set=variant-variant2-variant8-variant9-variant15-variant16-variant25-variant30-variant33-variant36-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:943,0,853:6,25,13,23
chr1	150991285	.	A	G	849.09	PASS	AC=2;AF=0.849;AN=2;DP=945;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1222,96,0:0,0,6,26
chr1	150997842	.	T	A	218.42	PASS	AC=1;AF=0.559;AN=2;DP=218;MQ=60;set=variant-variant2-variant8-variant9-variant10-variant15-variant16-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:132,0,299:7,4,4,0
chr1	150997940	.	T	C	530.44	PASS	AC=1;AF=0.718;AN=2;DP=1731;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:877,0,859:22,8,20,13
chr1	150998221	.	ATT	AT,A	459.65	PASS	AC=1,0;AF=0.731,0.013;AN=2;DP=1769;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:40:99:8,10,7,15
chr1	151000015	.	C	T	625.68	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.024;QD=21.58;ReadPosRankSum=0.073;SOR=0.593;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:8,21:29:99:654,0,258:1,7,4,17
chr1	151006539	.	C	A	2175.29	PASS	AC=2;AF=0.884;AN=2;DP=5113;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,138:139:99:4226,407,0:1,0,61,77
chr1	151008928	.	G	A	196.77	PASS	AC=2;AF=0.929;AN=2;DP=191;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,2,2
chr1	151009984	.	C	G	3326.11	PASS	AC=2;AF=0.7;AN=2;DP=383;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3354,317,0:0,0,63,43
chr1	151011543	.	G	A	3280.53	PASS	AC=2;AF=0.6;AN=2;DP=443;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3309,299,0:0,0,39,61
chr1	151015299	.	G	GA	187.98	PASS	AC=2;AF=0.882;AN=2;DP=506;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:59:501,59,0:0,0,15,4
chr1	151015868	.	G	A	3162.62	PASS	AC=2;AF=0.6;AN=2;DP=399;FS=0;FractionInformativeReads=1;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3191,311,0:0,0,58,46
chr1	151018861	.	A	G	936.83	PASS	AC=2;AF=0.833;AN=2;DP=755;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1122,84,0:0,0,11,17
chr1	151019180	.	A	G	3279.75	PASS	AC=2;AF=0.875;AN=2;DP=4026;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3691,327,0:0,0,42,67
chr1	151021509	.	A	G	834.88	PASS	AC=2;AF=0.6;AN=2;DP=106;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:863,69,0:0,0,4,19
chr1	151024688	.	T	G	1138.08	PASS	AC=2;AF=1;AN=2;DP=1383;FS=0;MQ=60;MQRankSum=0.612;ReadPosRankSum=1.019;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1760,173,0:0,0,29,29
chr1	151026815	.	C	T	3590.79	PASS	AC=2;AF=0.875;AN=2;DP=4144;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3233,318,0:0,0,48,58
chr1	151028234	.	G	T	3039.34	PASS	AC=2;AF=1;AN=2;DP=5315;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,127:128:99:3965,373,0:1,0,48,79
chr1	151031476	.	T	A	1281.1	PASS	AC=2;AF=0.875;AN=2;DP=2316;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2481,244,0:0,0,40,42
chr1	151031667	.	T	C	2701.97	PASS	AC=2;AF=0.888;AN=2;DP=4135;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4069,387,0:0,0,67,62
chr1	151032150	.	C	G	5817.84	PASS	AC=2;AF=1;AN=2;DP=7917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:6876,668,0:0,0,111,112
chr1	151039609	.	A	G	1288.83	PASS	AC=2;AF=0.888;AN=2;DP=1038;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1606,146,0:0,0,36,13
chr1	151040435	.	G	A	9887.61	PASS	AC=2;AF=0.833;AN=2;DP=9949;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,290:290:99:8990,869,0:0,0,151,139
chr1	151062957	.	G	A	7278.65	PASS	AC=2;AF=0.6;AN=2;DP=1006;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:7307,735,0:0,0,114,132
chr1	151070252	.	CA	C	744.23	PASS	AC=2;AF=0.833;AN=2;DP=1907;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,62:63:99:1457,159,0:1,0,42,20
chr1	151091181	.	A	G	5443.06	PASS	AC=2;AF=0.875;AN=2;DP=7292;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6175,620,0:0,0,99,108
chr1	151091279	.	CTT	CTTT,CT,C	73.55	PASS	AC=0,1,1;AF=0.065,0.457,0.022;AN=2;DP=1207;MQ=60;set=filterInvariant-variant5-filterInvariant6-filterInvariant9-filterInvariant10-variant11-filterInvariant14-variant15-filterInvariant16-variant21-filterInvariant23-filterInvariant24-variant27-variant28-filterInvariant29-variant30-filterInvariant33-variant34-filterInvariant35-filterInvariant37-variant38-variant39-filterInvariant44	GT:DP:GQ:SB	3/2:45:99:1,5,7,32
chr1	151093229	.	CT	CTT,C	331.46	PASS	AC=0,1;AF=0.259,0.241;AN=2;DP=1989;set=variant3-filterInvariant4-variant5-variant6-variant7-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-variant18-variant19-filterInvariant22-filterInvariant23-variant24-filterInvariant26-filterInvariant29-variant31-variant32-variant33-variant34-variant36-variant38-filterInvariant39-filterInvariant40-filterInvariant42-variant44	GT:DP:GQ:SB	0/2:44:99:10,16,0,18
chr1	151093526	.	G	A	3158.37	PASS	AC=2;AF=0.6;AN=2;DP=404;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3187,302,0:0,0,68,33
chr1	151093945	.	A	G	304.78	PASS	AC=2;AF=0.956;AN=2;DP=262;FS=0;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:539,45,0:0,0,5,10
chr1	151093983	.	T	C	182.97	PASS	AC=2;AF=0.955;AN=2;DP=176;FS=0;FractionInformativeReads=1;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:383,36,0:0,0,3,9
chr1	151094689	.	GGTTTTCTCCACAGATCT	G	7368.59	PASS	AC=2;AF=0.6;AN=2;DP=993;MQ=60;set=variant15-variant21-variant28-variant30-variant34	GT:AD:DP:GQ:PL:SB	1/1:3,243:246:99:7406,708,0:1,2,108,135
chr1	151096924	.	CT	C,CTT	321.47	PASS	AC=1,0;AF=0.487,0.013;AN=2;DP=3326;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant31-filterInvariant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:108:99:56,24,20,8
chr1	151097716	.	G	C	3735.56	PASS	AC=2;AF=1;AN=2;DP=4830;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4456,431,0:0,0,75,69
chr1	151098078	.	CTT	CT,C	72.48	PASS	AC=2,0;AF=0.5,0.5;AN=2;DP=21;FS=0;set=variant15-variant17-variant30-variant36	GT:DP:GQ:SB	1/1:5:15:0,0,1,4
chr1	151104055	.	C	T	76.41	PASS	AC=2;AF=0.924;AN=2;DP=228;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:317,30,0:0,0,7,3
chr1	151104598	.	A	G	1977.6	PASS	AC=2;AF=0.875;AN=2;DP=3189;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2412,233,0:0,0,33,45
chr1	151105824	.	C	G	2767.25	PASS	AC=2;AF=0.85;AN=2;DP=4151;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3698,369,0:0,0,58,64
chr1	151108137	.	T	G	1891.68	PASS	AC=2;AF=0.863;AN=2;DP=4992;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4078,407,0:0,0,78,58
chr1	151109603	.	T	C	229.79	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=9.229;FractionInformativeReads=1;MQ=60;MQRankSum=-0.533;QD=10.94;ReadPosRankSum=0.036;SOR=0.039;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:258,0,383:1,11,4,5
chr1	151114694	.	T	G	465.97	PASS	AC=2;AF=0.583;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:494,42,0:0,0,10,4
chr1	151114882	.	C	CT	1867.97	PASS	AC=2;AF=0.85;AN=2;DP=3251;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3466,280,0:0,0,56,37
chr1	151117010	.	G	A	194.32	PASS	AC=2;AF=0.583;AN=2;DP=91;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:223,27,0:0,0,4,5
chr1	151118035	.	C	G	949.36	PASS	AC=2;AF=0.605;AN=2;DP=1335;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant28-variant30-variant31-variant34-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3327,229,0:0,0,31,45
chr1	151118042	.	C	T	3209.23	PASS	AC=2;AF=0.583;AN=2;DP=408;MQ=60;set=variant15-variant21-variant28-variant30-variant34-variant39	GT:AD:DP:GQ:PL:SB	1/1:1,74:75:99:3237,188,0:1,0,30,44
chr1	151118500	.	T	C	553.74	PASS	AC=2;AF=0.605;AN=2;DP=1021;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant28-variant30-variant31-variant34-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1994,177,0:0,0,30,29
chr1	151118680	.	T	C	5466.38	PASS	AC=2;AF=0.583;AN=2;DP=770;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28-variant30-variant34-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5495,539,0:0,0,96,84
chr1	151129254	.	A	G	420.28	PASS	AC=2;AF=0.605;AN=2;DP=746;MQ=60;set=variant2-variant3-variant5-filterInvariant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant28-variant30-variant31-variant34-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1465,147,0:0,0,21,28
chr1	151131091	.	A	G	588.71	PASS	AC=2;AF=0.6;AN=2;DP=1102;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant28-variant30-variant31-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2245,201,0:0,0,47,20
chr1	151132714	.	CA	CAAAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAAAAAA,C	185.01	PASS	AC=0,1,0,0;AF=0.2,0.1,0.1,0.2;AN=2;DP=44;FS=0;set=variant12-variant15-variant22-variant23-variant41	GT:DP:GQ:SB	0/2:2:38:0,0,2,0
chr1	151132732	.	G	A	43.54	PASS	AC=1;AF=0.5;AN=2;DP=15;FractionInformativeReads=1;set=variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,107:2,2,2,0
chr1	151134579	.	T	TA	122.67	PASS	AC=2;AF=0.579;AN=2;DP=491;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant28-variant30-variant31-variant34-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,27:30:5:670,5,0:1,2,6,21
chr1	151143166	.	C	T	636.55	PASS	AC=2;AF=0.625;AN=2;DP=547;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant21-variant28-variant29-variant30-variant34-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2699,258,0:0,0,41,45
chr1	151146186	.	C	G	965.03	PASS	AC=2;AF=0.977;AN=2;DP=2791;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2070,177,0:0,0,16,43
chr1	151146276	.	T	C	157.38	PASS	AC=2;AF=0.977;AN=2;DP=785;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:666,54,0:0,0,4,14
chr1	151149601	.	A	G	449.11	PASS	AC=2;AF=1;AN=2;DP=875;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:937,75,0:0,0,8,17
chr1	151205303	.	A	G	409.28	PASS	AC=2;AF=0.813;AN=2;DP=1357;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1247,93,0:0,0,4,27
chr1	151209063	.	C	T	1061.19	PASS	AC=2;AF=0.813;AN=2;DP=4645;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4021,410,0:0,0,81,56
chr1	151209297	.	CTT	CTTTT,C,CTTT,CTTTTT,CT	296.7	PASS	AC=0,0,0,1,0;AF=0.286,0.036,0.143,0.036,0.036;AN=2;DP=932;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:DP:GQ:SB	0/4:15:96:2,6,2,5
chr1	151210789	.	C	T	1395.16	PASS	AC=2;AF=0.775;AN=2;DP=4451;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3844,390,0:0,0,59,71
chr1	151212399	.	C	CCTT	1003.35	PASS	AC=2;AF=0.909;AN=2;DP=3247;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3961,268,0:0,0,59,26
chr1	151220596	.	T	C	1645.83	PASS	AC=2;AF=1;AN=2;DP=2032;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.87;ReadPosRankSum=-0.606;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1628,162,0:0,0,30,24
chr1	151220893	.	AAG	A	3236.01	PASS	AC=2;AF=0.775;AN=2;DP=7435;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,202:202:99:8907,608,0:0,0,111,91
chr1	151227371	.	A	G	464.36	PASS	AC=2;AF=0.898;AN=2;DP=1241;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1236,108,0:0,0,12,24
chr1	151234430	.	C	CA	39.03	PASS	AC=1;AF=0.5;AN=2;DP=19;set=variant8-variant15-variant19	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:21:71,0,21:2,0,3,0
chr1	151237589	.	TC	T	1292.91	PASS	AC=2;AF=0.813;AN=2;DP=4905;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3673,358,0:0,0,52,67
chr1	151238222	.	G	A	450.93	PASS	AC=2;AF=0.775;AN=2;DP=1710;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2010,172,0:0,0,10,48
chr1	151239051	.	T	C	1295.24	PASS	AC=2;AF=0.813;AN=2;DP=4163;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4161,375,0:0,0,44,81
chr1	151239570	.	C	T	1081.12	PASS	AC=2;AF=0.775;AN=2;DP=4561;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:5148,487,0:0,0,82,81
chr1	151240008	.	A	G	318.24	PASS	AC=2;AF=0.8;AN=2;DP=1462;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1440,138,0:0,0,16,30
chr1	151254041	.	T	C	1289.44	PASS	AC=1;AF=0.852;AN=2;DP=4436;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1195,0,1316:35,19,33,13
chr1	151263782	.	A	G	731.36	PASS	AC=1;AF=0.732;AN=2;DP=2579;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,52:83:99:1497,0,825:16,15,24,28
chr1	151264513	.	A	G	1051.48	PASS	AC=2;AF=1;AN=2;DP=2269;FS=0;MQ=60;MQRankSum=0.075;ReadPosRankSum=-0.377;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1948,200,0:0,0,33,34
chr1	151271782	.	A	C	228.19	PASS	AC=1;AF=0.75;AN=2;DP=856;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:210,0,145:2,4,3,6
chr1	151278505	.	A	G	978.54	PASS	AC=1;AF=0.852;AN=2;DP=3195;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:803,0,831:17,13,16,11
chr1	151280400	.	C	G	283.32	PASS	AC=1;AF=0.852;AN=2;DP=1565;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,31:48:99:816,0,443:4,13,11,20
chr1	151283019	.	T	C	299.37	PASS	AC=1;AF=0.776;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:228,0,189:2,4,1,6
chr1	151288172	.	G	A	1500.51	PASS	AC=1;AF=0.707;AN=2;DP=5081;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,79:163:99:2177,0,2156:44,40,38,41
chr1	151288391	.	A	G	5169.08	PASS	AC=2;AF=1;AN=2;DP=9250;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,254:254:99:7508,760,0:0,0,127,127
chr1	151299692	.	A	AC,ACCCCC,ACC	52.41	PASS	AC=2,0,0;AF=0.5,0.05,0.05;AN=2;DP=120;MQ=60;set=variant8-variant15-variant16-variant21-variant22-variant25-variant30-variant35-variant37-variant41	GT:DP:GQ:SB	1/1:16:5:1,1,6,8
chr1	151313774	.	A	G	146.4	PASS	AC=1;AF=0.732;AN=2;DP=1539;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:516,0,752:17,14,13,11
chr1	151314379	.	T	C	1289.24	PASS	AC=1;AF=0.852;AN=2;DP=4819;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1664,0,1651:28,32,29,36
chr1	151316161	.	G	A	770.43	PASS	AC=2;AF=1;AN=2;DP=1712;FS=0;MQ=60;MQRankSum=1.209;ReadPosRankSum=1.209;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1532,135,0:0,0,27,18
chr1	151337788	.	A	G	354.27	PASS	AC=1;AF=0.683;AN=2;DP=1784;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:640,0,785:8,19,13,13
chr1	151341703	.	G	A	299.76	PASS	AC=1;AF=0.519;AN=2;DP=530;MQ=60;set=variant4-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:371,0,371:3,9,6,8
chr1	151341728	.	G	GC	171.47	PASS	AC=1;AF=0.677;AN=2;DP=450;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:211,0,315:3,8,6,2
chr1	151372138	.	G	A	1874.54	PASS	AC=2;AF=0.826;AN=2;DP=3131;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2528,241,0:0,0,29,52
chr1	151372770	.	A	G	1489.83	PASS	AC=2;AF=1;AN=2;DP=2478;FS=0;MQRankSum=0;ReadPosRankSum=1.496;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2081,173,0:0,0,22,36
chr1	151373200	.	T	C	4617.25	PASS	AC=2;AF=1;AN=2;DP=4879;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4471,429,0:0,0,71,72
chr1	151374545	.	C	T	723.83	PASS	AC=2;AF=0.86;AN=2;DP=707;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:996,81,0:0,0,4,23
chr1	151377248	.	T	C	2271.92	PASS	AC=2;AF=1;AN=2;DP=1801;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1652,132,0:0,0,16,28
chr1	151379250	.	G	A	1072.65	PASS	AC=2;AF=0.826;AN=2;DP=1189;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1273,108,0:0,0,26,10
chr1	151380503	.	AAAAAG	A	59.54	PASS	AC=1;AF=0.553;AN=2;DP=512;MQ=60;set=variant4-filterInvariant5-variant8-filterInvariant9-filterInvariant12-variant14-variant15-variant16-variant19-filterInvariant22-variant24-filterInvariant25-variant26-filterInvariant28-variant31-filterInvariant35-variant38-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:99,0,176:7,3,7,0
chr1	151380504	.	AAAAG	A	131.29	PASS	AC=1;AF=0.55;AN=2;DP=538;set=variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant12-filterInvariant14-filterInvariant15-variant17-variant18-variant23-filterInvariant27-filterInvariant28-variant29-variant33-filterInvariant34-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:90:90,0,129:8,0,6,0
chr1	151381320	.	GA	G	1558.6	PASS	AC=2;AF=0.826;AN=2;DP=1974;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:719,69,0:0,0,6,17
chr1	151384711	.	A	G	2097.57	PASS	AC=2;AF=0.864;AN=2;DP=2486;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2582,253,0:0,0,54,31
chr1	151384733	.	G	A	2435.69	PASS	AC=2;AF=0.864;AN=2;DP=3233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2986,292,0:0,0,59,39
chr1	151395782	.	T	C	1116.28	PASS	AC=2;AF=0.837;AN=2;DP=1014;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1321,102,0:0,0,29,5
chr1	151396037	.	A	C	2748.68	PASS	AC=2;AF=0.826;AN=2;DP=3383;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2896,270,0:0,0,32,58
chr1	151400942	.	A	C	237.97	PASS	AC=2;AF=0.826;AN=2;DP=1265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1202,114,0:0,0,13,25
chr1	151402045	.	A	G	2033.1	PASS	AC=2;AF=0.864;AN=2;DP=2843;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2955,270,0:0,0,58,32
chr1	151483854	.	A	G	983.26	PASS	AC=2;AF=1;AN=2;DP=1324;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1535,108,0:0,0,31,5
chr1	151483892	.	G	A	1676.79	PASS	AC=2;AF=1;AN=2;DP=2190;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2382,171,0:0,0,47,10
chr1	151483911	.	T	TGCCCGA,TGCCCGAGCCCGA	2255.88	PASS	AC=1,1;AF=0.909,0.057;AN=2;DP=2750;set=Intersection	GT:DP:GQ:SB	1/2:47:99:1,1,35,10
chr1	151499635	.	C	T	1232.05	PASS	AC=2;AF=0.881;AN=2;DP=1903;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1691,156,0:0,0,17,35
chr1	151501698	.	A	G	2688.1	PASS	AC=2;AF=0.966;AN=2;DP=2857;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2960,285,0:0,0,60,35
chr1	151501737	.	T	C	3392.08	PASS	AC=2;AF=0.966;AN=2;DP=3816;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4061,378,0:0,0,74,52
chr1	151502427	.	C	T	1738.99	PASS	AC=1;AF=0.5;AN=2;DP=962;MQ=60;set=variant4-variant15-variant21-variant25-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:114,97:211:99:2076,0,2659:66,48,59,38
chr1	151504778	.	C	T	273.12	PASS	AC=2;AF=0.633;AN=2;DP=1043;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1215,116,0:0,0,28,11
chr1	151509966	.	T	TA	494.89	PASS	AC=2;AF=0.909;AN=2;DP=1833;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,51:52:99:1327,129,0:0,1,22,29
chr1	151510026	.	A	G	993.56	PASS	AC=2;AF=0.932;AN=2;DP=2054;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,73:74:99:2245,195,0:1,0,38,35
chr1	151510825	.	C	T	854.36	PASS	AC=1;AF=0.5;AN=2;DP=728;MQ=60;set=variant4-variant7-variant15-variant20-variant21-variant25-variant28-variant31-variant34-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,54:77:99:1324,0,523:14,9,26,28
chr1	151511268	.	T	G	85.73	PASS	AC=1;AF=0.654;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11-variant15-variant16-variant26-variant29-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:166,0,28:0,1,1,4
chr1	151534142	.	A	C	381.99	PASS	AC=2;AF=0.617;AN=2;DP=2196;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,100:101:99:3302,257,0:1,0,69,31
chr1	151538507	.	T	TC	216.58	PASS	AC=2;AF=0.977;AN=2;DP=548;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:45:451,45,0:0,0,1,13
chr1	151542099	.	G	T	4470.42	PASS	AC=2;AF=0.795;AN=2;DP=5876;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4629,425,0:0,0,80,62
chr1	151546931	.	A	G	545.3	PASS	AC=2;AF=0.932;AN=2;DP=945;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1264,102,0:0,0,5,29
chr1	151551078	.	A	G	69.72	PASS	AC=2;AF=0.866;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:467,36,0:0,0,11,1
chr1	151551320	.	G	A	2448.68	PASS	AC=2;AF=0.78;AN=2;DP=4435;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3795,366,0:0,0,55,67
chr1	151552301	.	TG	T	482.2	PASS	AC=2;AF=0.788;AN=2;DP=519;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:648,48,0:0,0,3,13
chr1	151553918	.	C	T	151.77	PASS	AC=2;AF=0.78;AN=2;DP=451;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:489,39,0:0,0,11,2
chr1	151554503	.	T	C	4904.63	PASS	AC=2;AF=0.78;AN=2;DP=6279;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,238:238:99:7431,713,0:0,0,141,97
chr1	151555701	.	C	T	325.66	PASS	AC=2;AF=0.811;AN=2;DP=466;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:349,27,0:0,0,7,2
chr1	151555741	.	A	G	186.72	PASS	AC=2;AF=0.852;AN=2;DP=826;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:542,42,0:0,0,11,3
chr1	151634512	.	A	AT	348.48	PASS	AC=1;AF=0.744;AN=2;DP=1299;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:597,0,314:11,3,18,5
chr1	151634803	.	G	A	445.65	PASS	AC=1;AF=0.667;AN=2;DP=1266;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:791,0,694:3,17,2,21
chr1	151664882	.	CTT	CTTT,CTTTT,C,CT,CTTTTT	183.1	PASS	AC=1,0,0,0,0;AF=0.235,0.206,0.044,0.044,0.044;AN=2;DP=1670;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-filterInvariant15-filterInvariant16-variant17-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant39-variant40-filterInvariant41-variant43-variant44	GT:DP:GQ:SB	0/1:33:96:14,7,0,12
chr1	151664908	.	TAG	T	200.17	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=54.898;FractionInformativeReads=0.852;MQ=60;MQRankSum=-1.689;QD=3.71;ReadPosRankSum=-2.089;SOR=5.131;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:34,12:46:99:237,0,1284:8,26,12,0
chr1	151664910	.	G	GTTTT	200.17	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=54.898;FractionInformativeReads=0.868;MQ=60;MQRankSum=-0.863;QD=3.78;ReadPosRankSum=-3.84;SOR=5.131;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:34,12:46:99:237,0,1284:8,26,12,0
chr1	151667886	.	CTTT	CTTTTTTTT,CTT,C,CTTTTT	75.88	PASS	AC=0,1,0,0;AF=0.1,0.1,0.1,0.2;AN=2;DP=118;MQ=60;set=variant7-filterInvariant15-variant17-variant29-variant40	GT:DP:GQ:SB	0/2:17:57:5,4,1,7
chr1	151668295	.	A	C	1136.56	PASS	AC=1;AF=0.6;AN=2;DP=2224;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,59:97:99:1660,0,859:20,18,38,21
chr1	151668974	.	TTTCTTTCG	TTTCGTTCTTTCGTTCTTTCG,T,TTTCTTTCGTTCTTTCGTTCTTTCG,TTTCTTTCTTTCGTTCTTTCGTTCTTTCGTTCTTTCG	52.44	PASS	AC=1,0,0,0;AF=0.214,0.286,0.286,0.071;AN=2;DP=38;FS=0;MQ=60;set=variant9-variant15-variant16-variant19-variant33-variant37-variant40	GT:DP:GQ:SB	0/1:5:99:0,2,1,2
chr1	151669442	.	C	T	307.18	PASS	AC=1;AF=0.6;AN=2;DP=1020;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:547,0,804:21,8,15,7
chr1	151669555	.	C	A	1414.78	PASS	AC=1;AF=0.58;AN=2;DP=3037;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,63:143:99:1533,0,2122:48,32,35,28
chr1	151669997	.	C	A	1188.99	PASS	AC=1;AF=0.596;AN=2;DP=2564;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,59:125:99:1567,0,1724:37,29,31,28
chr1	151675414	.	A	G	2209.85	PASS	AC=2;AF=1;AN=2;DP=2908;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2623,242,0:0,0,41,40
chr1	151675618	.	T	C	1128.54	PASS	AC=2;AF=1;AN=2;DP=2711;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2348,216,0:0,0,33,39
chr1	151679441	.	T	C	887.26	PASS	AC=1;AF=0.593;AN=2;DP=1332;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:988,0,856:18,11,20,18
chr1	151679900	.	C	T	1158.9	PASS	AC=1;AF=0.593;AN=2;DP=3179;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,58:134:99:1440,0,2041:48,28,32,26
chr1	151679963	.	C	T	2337.47	PASS	AC=1;AF=0.579;AN=2;DP=4148;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant33-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,90:211:99:2326,0,3003:60,61,47,43
chr1	151681635	.	T	C	2792.27	PASS	AC=1;AF=0.579;AN=2;DP=4177;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant33-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:159,127:286:99:3052,0,3330:85,74,75,52
chr1	151686081	.	C	T	115.39	PASS	AC=1;AF=0.662;AN=2;DP=488;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:361,0,169:3,4,7,7
chr1	151686983	.	T	A	1491.26	PASS	AC=1;AF=0.621;AN=2;DP=5636;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,105:190:99:2593,0,2036:50,35,51,54
chr1	151700189	.	C	CCTG	639.95	PASS	AC=2;AF=0.92;AN=2;DP=1593;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1762,120,0:0,0,10,29
chr1	151700214	.	T	C	65.34	PASS	AC=1;AF=0.565;AN=2;DP=499;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant29-variant31-variant33-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:371,0,393:2,11,1,10
chr1	151700227	.	G	A	31.48	PASS	AC=1;AF=0.595;AN=2;DP=353;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant13-variant15-variant18-variant19-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:192,0,319:1,9,0,6
chr1	151701345	.	A	G	958.44	PASS	AC=1;AF=0.591;AN=2;DP=2833;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,74:157:99:1805,0,1980:38,45,34,40
chr1	151732060	.	A	G	49.51	PASS	AC=1;AF=0.614;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant23-variant24-variant26-variant29-variant31-variant33-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:154,0,111:3,2,3,2
chr1	151732700	.	A	G	1060.11	PASS	AC=1;AF=0.571;AN=2;DP=2796;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:922,0,1023:14,22,17,22
chr1	151733335	.	T	G	535.63	PASS	AC=1;AF=0.571;AN=2;DP=3351;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,50:114:99:1190,0,1673:37,27,25,25
chr1	151733379	.	CAAA	CAAAAAAA,CAAAAA,CA,CAAAA,C,CAAAAAA,CAA,CAAAAAAAAAAAAAAAAAA	927.24	PASS	AC=0,0,0,0,1,0,0,0;AF=0.017,0.138,0.052,0.086,0.052,0.069,0.138,0.017;AN=2;DP=1735;set=variant3-variant4-variant5-filterInvariant6-filterInvariant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-variant31-variant32-filterInvariant35-variant36-filterInvariant37-variant38-filterInvariant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:28:99:6,13,3,6
chr1	151736268	.	CTG	C	940.29	PASS	AC=1;AF=0.574;AN=2;DP=1566;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:678,0,1176:11,15,9,9
chr1	151736876	.	C	T	7966.75	PASS	AC=1;AF=0.671;AN=2;DP=7727;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,122:240:99:2801,0,2846:56,62,62,60
chr1	151737349	.	T	A	564.76	PASS	AC=2;AF=0.886;AN=2;DP=2038;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1223,111,0:0,0,22,15
chr1	151738184	.	ATT	A,AT	1978.82	PASS	AC=0,2;AF=0.125,0.852;AN=2;DP=4873;MQ=60;set=Intersection	GT:DP:GQ:SB	2/2:83:99:0,1,22,60
chr1	151740420	.	G	A	678.96	PASS	AC=1;AF=0.617;AN=2;DP=1151;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:543,0,502:14,5,15,5
chr1	151740479	.	C	A	2247.15	PASS	AC=2;AF=1;AN=2;DP=2423;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2046,197,0:0,0,42,24
chr1	151740666	.	T	C	4591.75	PASS	AC=2;AF=1;AN=2;DP=6604;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:6410,607,0:0,0,107,96
chr1	151742550	.	GGAGAGA	G	815.28	PASS	AC=1;AF=0.609;AN=2;DP=1743;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1905,0,1776:26,11,33,13
chr1	151742565	.	GGGAGACCATGGGGAGACGGAGAC	G	911.47	PASS	AC=1;AF=0.609;AN=2;DP=2438;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,57:115:99:2107,0,2537:33,25,39,18
chr1	151742798	.	T	C	618.21	PASS	AC=1;AF=0.617;AN=2;DP=1188;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:370,0,1048:6,22,1,12
chr1	151743870	.	TA	T	252.62	PASS	AC=1;AF=0.606;AN=2;DP=890;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:590,0,288:3,7,5,13
chr1	151746235	.	C	T	351.4	PASS	AC=1;AF=0.606;AN=2;DP=844;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:573,0,739:7,14,3,14
chr1	151746524	.	C	A	549.72	PASS	AC=1;AF=0.606;AN=2;DP=1814;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,32:50:99:914,0,434:7,11,15,17
chr1	151747043	.	C	T	1133.01	PASS	AC=1;AF=0.606;AN=2;DP=2596;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,52:89:99:1423,0,1073:15,22,22,30
chr1	151747733	.	C	T	693.15	PASS	AC=1;AF=0.606;AN=2;DP=1804;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:880,0,991:18,18,14,17
chr1	151747799	.	G	A	675.6	PASS	AC=1;AF=0.676;AN=2;DP=1844;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:858,0,793:17,11,18,13
chr1	151747970	.	A	G	774.93	PASS	AC=1;AF=0.604;AN=2;DP=2224;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant29-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,30:73:99:917,0,1164:15,28,13,17
chr1	151748425	.	C	A	307.11	PASS	AC=1;AF=0.662;AN=2;DP=884;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:391,0,380:4,9,3,11
chr1	151751081	.	G	A	602.54	PASS	AC=1;AF=0.606;AN=2;DP=1501;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:554,0,619:15,9,16,6
chr1	151752733	.	ATACTATCTATACAACCAGTCCTCAATTACTTTATATACAACCTCAGT	A	304.74	PASS	AC=1;AF=0.606;AN=2;DP=999;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,19:25:99:685,0,2489:1,5,5,14
chr1	151754112	.	T	C	1070.35	PASS	AC=1;AF=0.606;AN=2;DP=2976;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,57:118:99:1449,0,1541:29,32,27,30
chr1	151763246	.	G	A	119.26	PASS	AC=2;AF=0.905;AN=2;DP=486;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:712,51,0:0,0,15,2
chr1	151763815	.	C	T	140.78	PASS	AC=2;AF=0.895;AN=2;DP=1434;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1177,112,0:0,0,25,14
chr1	151773152	.	A	G	1467.68	PASS	AC=2;AF=1;AN=2;DP=2473;FS=0;MQ=60;MQRankSum=0.037;ReadPosRankSum=1.585;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2278,216,0:0,0,41,31
chr1	151773167	.	G	A	609.02	PASS	AC=1;AF=0.617;AN=2;DP=1871;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:943,0,1040:25,18,21,12
chr1	151777651	.	G	A	636.2	PASS	AC=1;AF=0.583;AN=2;DP=2756;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,58:120:99:1274,0,1505:32,30,33,25
chr1	151777927	.	C	T	531.91	PASS	AC=1;AF=0.5;AN=2;DP=185;set=variant11-variant15-variant25-variant28	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:516,0,456:9,9,6,11
chr1	151778683	.	C	T	334.55	PASS	AC=1;AF=0.662;AN=2;DP=1523;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:506,0,767:4,17,1,13
chr1	151778899	.	T	C	482.05	PASS	AC=1;AF=0.6;AN=2;DP=2566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,57:100:99:1442,0,1037:20,23,30,27
chr1	151780177	.	C	T	432.91	PASS	AC=1;AF=0.638;AN=2;DP=1854;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,43:71:99:1168,0,724:10,18,20,23
chr1	151783688	.	A	C	634.6	PASS	AC=1;AF=0.65;AN=2;DP=1091;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:245,0,541:14,7,8,1
chr1	151786281	.	G	A	107.99	PASS	AC=1;AF=0.575;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:69:127,0,69:1,2,2,4
chr1	151789588	.	C	CTGTGTG,CTGTGTGTG,CTG,CTGTGTGTGTG,CTGTG	1526.57	PASS	AC=1,1,0,0,0;AF=0.318,0.602,0.023,0.034,0.011;AN=2;DP=1535;set=Intersection	GT:DP:GQ:SB	1/2:37:99:0,0,28,9
chr1	151789609	.	C	T	1378.64	PASS	AC=2;AF=0.989;AN=2;DP=2400;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,44:45:99:1960,125,0:1,0,30,14
chr1	151789611	.	C	T	408.38	PASS	AC=2;AF=0.909;AN=2;DP=2396;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,44:45:99:1959,125,0:1,0,30,14
chr1	151789647	.	T	G	1354.99	PASS	AC=2;AF=0.694;AN=2;DP=3625;set=variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3907,364,0:0,0,76,46
chr1	151803764	.	G	C	250.39	PASS	AC=2;AF=0.943;AN=2;DP=692;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:485,39,0:0,0,5,8
chr1	151811226	.	G	A	1821.37	PASS	AC=2;AF=0.989;AN=2;DP=2314;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2179,203,0:0,0,41,27
chr1	151812578	.	A	C	510.1	PASS	AC=2;AF=1;AN=2;DP=676;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:821,66,0:0,0,17,5
chr1	151819031	.	T	G	2382.08	PASS	AC=2;AF=1;AN=2;DP=3746;FS=0;MQ=60;MQRankSum=1.254;ReadPosRankSum=-0.378;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3471,341,0:0,0,56,58
chr1	151819691	.	AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG	A	710.26	PASS	AC=2;AF=0.966;AN=2;DP=4764;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1491,160,0:0,0,14,17
chr1	151820298	.	G	C	4739.7	PASS	AC=2;AF=1;AN=2;DP=7779;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:6505,682,0:0,0,114,114
chr1	151820324	.	T	C	4726.58	PASS	AC=2;AF=0.854;AN=2;DP=7153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6231,644,0:0,0,100,115
chr1	151825713	.	G	C	30.23	PASS	AC=2;AF=0.736;AN=2;DP=676;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:550,51,0:0,0,12,5
chr1	151825991	.	G	T	246.29	PASS	AC=2;AF=0.797;AN=2;DP=2932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2144,213,0:0,0,36,35
chr1	151846059	.	C	T	246.9	PASS	AC=2;AF=0.94;AN=2;DP=249;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:308,24,0:0,0,7,1
chr1	151846517	.	C	T	538.5	PASS	AC=2;AF=0.717;AN=2;DP=408;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:395,36,0:0,0,5,7
chr1	151862661	.	G	A	1781.53	PASS	AC=2;AF=0.712;AN=2;DP=2237;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,77:78:99:2288,186,0:1,0,47,30
chr1	151867560	.	G	A	665.01	PASS	AC=2;AF=0.898;AN=2;DP=2346;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2457,213,0:0,0,30,41
chr1	151881885	.	A	C	621.79	PASS	AC=2;AF=0.898;AN=2;DP=3030;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2634,242,0:0,0,39,42
chr1	151964935	.	C	G	655.91	PASS	AC=1;AF=0.529;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant14-variant15-variant16-variant17-variant21-variant23-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:719,0,474:14,3,18,10
chr1	151966348	.	C	T	1708.48	PASS	AC=2;AF=0.712;AN=2;DP=2017;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1661,173,0:0,0,29,29
chr1	152005327	.	TA	T	1580.63	PASS	AC=1;AF=0.543;AN=2;DP=2371;MQ=60;set=variant2-variant7-variant11-variant13-variant15-variant16-variant17-variant21-variant23-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,78:138:99:2637,0,1969:29,31,34,44
chr1	152005482	.	C	G	454.35	PASS	AC=1;AF=0.552;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:212,0,384:0,10,0,6
chr1	152009530	.	T	C	1324.19	PASS	AC=2;AF=0.898;AN=2;DP=4135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3301,318,0:0,0,44,62
chr1	152052246	.	TCTATCCCA	T	2755.78	PASS	AC=1;AF=0.5;AN=2;DP=298;set=variant15-variant21	GT:AD:DP:GQ:PL:SB	0/1:88,74:162:99:2793,0,5054:41,47,30,44
chr1	152057002	.	A	G	1234.5	PASS	AC=1;AF=0.5;AN=2;DP=552;MQ=60;set=variant12-variant15-variant19-variant21-variant35	GT:AD:DP:GQ:PL:SB	0/1:58,71:129:99:1865,0,1576:20,38,29,42
chr1	152060796	.	A	T	415.47	PASS	AC=2;AF=1;AN=2;DP=718;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:689,63,0:0,0,6,15
chr1	152079823	.	C	G	5109.07	PASS	AC=1;AF=0.607;AN=2;DP=9514;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:229,219:448:99:5109,0,5934:95,134,95,124
chr1	152079989	.	T	G	6590.65	PASS	AC=1;AF=0.7;AN=2;DP=5995;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:118,125:243:99:3472,0,3099:61,57,70,55
chr1	152080757	.	G	C	2181.63	PASS	AC=1;AF=0.5;AN=2;DP=217;FS=4.783;FractionInformativeReads=0.991;MQ=59.45;MQRankSum=-2.55;QD=10.05;ReadPosRankSum=-0.213;SOR=0.803;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:127,88:215:99:2210,0,3720:67,60,40,48
chr1	152081921	.	G	C	7990.71	PASS	AC=1;AF=0.707;AN=2;DP=7184;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:155,141:296:99:3615,0,4130:84,71,71,70
chr1	152083325	.	A	T	2730	PASS	AC=1;AF=0.5;AN=2;DP=2796;MQ=60;set=variant2-variant11-variant15-variant16-variant17-variant21-variant23-variant28-variant29-variant30-variant32-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,105:191:99:2636,0,2089:43,43,55,50
chr1	152085505	.	A	C	4664.24	PASS	AC=2;AF=1;AN=2;DP=5541;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4344,413,0:0,0,58,80
chr1	152126467	.	T	C	4440.48	PASS	AC=1;AF=0.694;AN=2;DP=3412;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,51:121:99:1589,0,2231:45,25,39,12
chr1	152128121	.	G	A	6061.98	PASS	AC=1;AF=0.5;AN=2;DP=4276;set=variant12-variant15-variant16-variant19-variant21-variant35	GT:AD:DP:GQ:PL:SB	0/1:399,369:768:99:8742,0,10310:197,202,178,191
chr1	152184487	.	T	G	2354.45	PASS	AC=2;AF=0.989;AN=2;DP=1804;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2280,174,0:0,0,52,6
chr1	152184534	.	C	G	4572.31	PASS	AC=2;AF=0.779;AN=2;DP=4395;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4492,378,0:0,0,98,28
chr1	152184704	.	C	T	17302.2	PASS	AC=2;AF=0.779;AN=2;DP=20707;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,506:507:99:15637,1510,0:1,0,243,263
chr1	152184950	.	T	G	11110.9	PASS	AC=2;AF=0.779;AN=2;DP=15103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,361:364:99:11002,1056,0:3,0,167,194
chr1	152185095	.	T	A	5658.15	PASS	AC=2;AF=0.779;AN=2;DP=6282;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5525,480,0:0,0,68,92
chr1	152185184	.	C	T	7437.06	PASS	AC=2;AF=0.779;AN=2;DP=9548;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:7528,700,0:0,0,138,96
chr1	152185762	.	C	G	3981.12	PASS	AC=2;AF=0.763;AN=2;DP=7158;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:4688,328,0:0,0,53,56
chr1	152185768	.	T	G	3760.3	PASS	AC=2;AF=0.757;AN=2;DP=6816;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:4292,292,0:0,0,45,48
chr1	152186099	.	C	T	1348.77	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=462;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:78,72:150:99:1377,0,1575:26,52,28,44
chr1	152186141	.	C	T	496.69	DRAGENHardSNP	AC=2;AF=0.84;AN=2;DP=1599;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:2189,203,0:0,1,18,64
chr1	152186178	.	C	T	142.19	PASS	AC=2;AF=0.895;AN=2;DP=353;set=filterInvariant-filterInvariant6-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant23-filterInvariant24-filterInvariant25-variant32-filterInvariant33-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:27:483,27,0:0,1,1,16
chr1	152186699	.	T	A	309.08	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=14229;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:547,202:749:99:3028,0,12085:324,223,129,73
chr1	152186766	.	G	A	921.84	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=20029;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:598,421:1019:99:7294,0,12298:279,319,211,210
chr1	152187183	.	C	A	666.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12510;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:469,268:737:99:5482,0,11108:96,373,48,220
chr1	152187554	.	C	T	303.13	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5685;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:146,108:254:99:1991,0,3065:92,54,58,50
chr1	152187562	.	A	C	1782.51	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=6216;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,216:216:99:7429,657,0:0,0,129,87
chr1	152187935	.	C	T	1703.23	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=7765;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:151,167:318:99:6861,0,6585:95,56,129,38
chr1	152187945	.	C	T	1980.14	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=9686;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:177,256:433:99:8563,0,6755:112,65,178,78
chr1	152188109	.	T	A	1592.2	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=22758;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:762,563:1325:99:10761,0,18305:506,256,199,364
chr1	152188176	.	G	A	1760.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=30834;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:1572,208:1780:99:385,0,35924:929,643,97,111
chr1	152188463	.	G	A	2538.03	PASS	AC=1;AF=0.5;AN=2;DP=53267;set=variant-filterInvariant4-variant6-variant7-filterInvariant8-variant10-variant11-variant13-variant15-filterInvariant16-variant20-variant21-variant23-variant24-variant25-filterInvariant26-filterInvariant28-variant29-filterInvariant30-variant32-variant33-filterInvariant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2345,681:3026:99:9577,0,55254:1044,1301,297,384
chr1	152188920	.	C	T	462.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=7432;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:353,76:429:99:651,0,7934:154,199,31,45
chr1	152188998	.	C	T	319.16	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4857;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:164,72:236:99:1208,0,3858:33,131,23,49
chr1	152190720	.	C	T	166.79	PASS	AC=2;AF=0.789;AN=2;DP=329;FS=0;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant8-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant15-filterInvariant16-filterInvariant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant35-filterInvariant36-filterInvariant38-variant39-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:249,24,0:0,0,8,0
chr1	152191051	.	G	A	4344.79	PASS	AC=1;AF=0.5;AN=2;DP=2310;set=variant13-variant15-variant23-variant29-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:270,259:529:99:6914,0,6837:138,132,131,128
chr1	152191709	.	C	G	6813.51	PASS	AC=2;AF=0.786;AN=2;DP=16282;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,433:433:99:13819,1298,0:0,0,228,205
chr1	152191879	.	G	A	6919.62	PASS	AC=2;AF=0.779;AN=2;DP=19019;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,448:449:99:14249,1335,0:1,0,230,218
chr1	152192097	.	C	CGG	235.1	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=2360;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:446,43:489:99:356,0,19089:225,221,41,2
chr1	152192100	.	A	C	67.19	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4812;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:464,54:518:99:488,0,19690:239,225,51,3
chr1	152192101	.	ATC	A	49.14	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=3745;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:470,58:528:99:462,0,20043:239,231,53,5
chr1	152192114	.	C	T	4760.26	PASS	AC=1;AF=0.581;AN=2;DP=17057;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,419:555:99:11770,0,3630:92,44,203,216
chr1	152192163	.	G	T	104.55	PASS	AC=1;AF=0.5;AN=2;DP=13218;set=filterInvariant-variant6-filterInvariant7-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant15-filterInvariant16-variant19-variant20-variant21-variant23-variant24-variant25-filterInvariant26-variant28-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:427,215:642:99:3564,0,11304:213,214,99,116
chr1	152192219	.	G	C	44.07	PASS	AC=1;AF=0.5;AN=2;DP=13257;set=filterInvariant-variant6-filterInvariant7-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant15-filterInvariant16-variant19-variant20-variant21-variant23-variant24-variant25-filterInvariant26-variant28-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:423,215:638:99:3747,0,11408:202,221,98,117
chr1	152192259	.	T	C	516.65	PASS	AC=1;AF=0.5;AN=2;DP=7604;set=filterInvariant6-filterInvariant10-filterInvariant12-filterInvariant13-variant15-filterInvariant19-filterInvariant20-variant21-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant29-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:393,81:474:99:1635,0,11088:188,205,5,76
chr1	152192293	.	C	T	6323.97	PASS	AC=2;AF=0.779;AN=2;DP=15241;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,399:399:99:12856,1206,0:0,0,186,213
chr1	152192631	.	C	T	7465.84	PASS	AC=2;AF=0.779;AN=2;DP=19684;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,500:500:99:15715,1498,0:0,0,243,257
chr1	152192687	.	T	C	6293.09	PASS	AC=2;AF=0.989;AN=2;DP=17135;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,437:437:99:13706,1306,0:0,0,213,224
chr1	152192825	.	C	T	1897.27	PASS	AC=2;AF=0.609;AN=2;DP=7192;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,297:297:99:9684,886,0:0,0,138,159
chr1	152192978	.	T	C	6164.6	PASS	AC=2;AF=0.989;AN=2;DP=17094;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,440:440:99:13846,1319,0:0,0,227,213
chr1	152193052	.	A	G	7120.94	PASS	AC=2;AF=0.989;AN=2;DP=18428;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,462:463:99:15017,1377,0:0,1,235,227
chr1	152193121	.	G	T	8362.16	PASS	AC=2;AF=0.779;AN=2;DP=20036;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,526:527:99:16484,1531,0:1,0,287,239
chr1	152193286	.	G	T	3020.87	PASS	AC=2;AF=0.609;AN=2;DP=17593;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,672:673:99:29777,1971,0:0,1,326,346
chr1	152193291	.	G	T	9286.85	PASS	AC=2;AF=0.779;AN=2;DP=24408;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,673:674:99:29857,1982,0:0,1,330,343
chr1	152193544	.	A	G	4795.25	PASS	AC=2;AF=0.786;AN=2;DP=7906;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,236:236:99:10496,716,0:0,0,98,138
chr1	152193547	.	G	A	4819.95	PASS	AC=2;AF=0.989;AN=2;DP=8076;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:10412,707,0:0,0,96,136
chr1	152193851	.	C	T	3908.52	PASS	AC=2;AF=0.786;AN=2;DP=5087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3914,396,0:0,0,64,68
chr1	152193990	.	A	G	1179.44	PASS	AC=2;AF=0.786;AN=2;DP=1245;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1089,90,0:0,0,6,24
chr1	152195728	.	AT	A	6864.44	PASS	AC=2;AF=0.989;AN=2;DP=12115;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:5,302:307:99:8087,793,0:3,2,133,169
chr1	152195851	.	TAGTC	T	2241.7	PASS	AC=2;AF=0.779;AN=2;DP=2878;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:3695,250,0:0,0,24,59
chr1	152196717	.	C	A	156.22	PASS	AC=2;AF=0.989;AN=2;DP=602;FractionInformativeReads=1;MQ=60;MQRankSum=-1.936;ReadPosRankSum=0.421;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:366,30,0:0,0,3,7
chr1	152196814	.	C	T	111.22	PASS	AC=2;AF=1;AN=2;DP=160;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,1,1
chr1	152274685	.	T	A	4722.79	PASS	AC=2;AF=1;AN=2;DP=5961;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4454,458,0:0,0,93,60
chr1	152278434	.	T	G	590.11	PASS	AC=1;AF=0.5;AN=2;DP=916;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:433,0,549:17,0,13,0
chr1	152279406	.	T	G	151.22	PASS	AC=1;AF=0.563;AN=2;DP=240;FS=0;FractionInformativeReads=1;set=variant4-variant7-variant8-variant9-variant15-variant17-variant21-variant24-variant25-variant26-variant28-variant30-variant35-variant36-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:400,0,223:7,0,12,0
chr1	152384498	.	G	GT	162.49	PASS	AC=2;AF=0.893;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:404,30,0:0,0,8,2
chr1	152384833	.	T	C	1592	PASS	AC=2;AF=0.884;AN=2;DP=2388;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1869,171,0:0,0,22,35
chr1	152484129	.	G	A	3053.34	PASS	AC=2;AF=0.713;AN=2;DP=8366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:6808,653,0:0,0,106,113
chr1	152487979	.	C	T	2256.82	PASS	AC=2;AF=0.713;AN=2;DP=2973;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,88:90:99:2553,220,0:1,1,43,45
chr1	152488063	.	C	T	2822.4	PASS	AC=2;AF=0.725;AN=2;DP=4280;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,134:136:99:3954,357,0:1,1,72,62
chr1	152488428	.	T	C	1482.57	PASS	AC=2;AF=0.732;AN=2;DP=2007;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1799,150,0:0,0,10,40
chr1	152538358	.	G	C	1409.29	PASS	AC=1;AF=0.577;AN=2;DP=1741;MQ=60;set=variant10-variant15-variant17-variant19-variant21-variant25-variant26-variant27-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,83:156:99:2183,0,1798:36,37,49,34
chr1	152539393	.	G	A	51.23	PASS	AC=2;AF=0.542;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant20-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,0,2
chr1	152551801	.	C	A	138.96	PASS	AC=1;AF=0.524;AN=2;DP=294;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:267,0,250:8,2,6,5
chr1	152552285	.	C	A	2830.61	PASS	AC=1;AF=0.558;AN=2;DP=9114;set=variant-variant2-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:210,192:402:99:4853,0,5334:124,86,124,68
chr1	152552461	.	C	A	3769.74	PASS	AC=1;AF=0.571;AN=2;DP=3418;MQ=60;set=variant4-variant8-variant10-variant15-variant19-variant21-variant25-variant26-variant27-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,130:257:99:3447,0,3454:43,84,45,85
chr1	152595194	.	G	A	150.99	PASS	AC=1;AF=0.571;AN=2;DP=778;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:359,0,519:12,9,10,4
chr1	152636843	.	A	T	845.26	PASS	AC=1;AF=0.543;AN=2;DP=3083;set=variant-variant2-variant5-variant6-variant9-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,83:155:99:2542,0,1767:39,33,46,37
chr1	152637150	.	A	T	2215.84	PASS	AC=1;AF=0.607;AN=2;DP=4493;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:96,73:169:99:1903,0,2253:36,60,25,48
chr1	152649114	.	T	A	357.84	PASS	AC=1;AF=0.625;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:409,0,293:3,8,1,11
chr1	152659805	.	G	A	1345.36	PASS	AC=1;AF=0.587;AN=2;DP=2493;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,60:131:99:1598,0,1868:23,48,15,45
chr1	152659848	.	A	G	869.67	PASS	AC=1;AF=0.587;AN=2;DP=1453;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:919,0,1025:9,27,6,25
chr1	152670737	.	G	A	225.83	PASS	AC=1;AF=0.587;AN=2;DP=1095;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,30:69:99:805,0,1032:25,14,21,9
chr1	152672005	.	T	C	30.16	PASS	AC=1;AF=0.587;AN=2;DP=393;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:238,0,107:0,3,1,6
chr1	152681543	.	T	C	3551.41	PASS	AC=2;AF=1;AN=2;DP=13896;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,375:375:99:11321,1124,0:0,0,208,167
chr1	152681680	.	C	CAGCTCTGGGGGCTGCTGT	526.66	PASS	AC=2;AF=0.75;AN=2;DP=7196;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:7758,526,0:0,0,53,121
chr1	152682058	.	TTTTCTGA	T	499.41	PASS	AC=1;AF=0.6;AN=2;DP=725;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:531,0,1695:5,14,3,11
chr1	152691078	.	A	G	398.46	PASS	AC=1;AF=0.611;AN=2;DP=1318;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:819,0,866:17,18,19,14
chr1	152691272	.	G	T	94.73	PASS	AC=1;AF=0.615;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:185,0,154:1,4,1,5
chr1	152691943	.	G	A	959.31	PASS	AC=1;AF=0.611;AN=2;DP=2739;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,52:123:99:1344,0,1800:46,25,36,16
chr1	152692074	.	G	C	2947.8	PASS	AC=1;AF=0.611;AN=2;DP=7074;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:149,152:301:99:4035,0,3641:82,67,89,63
chr1	152692472	.	A	C	590.39	PASS	AC=1;AF=0.611;AN=2;DP=4019;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,93:171:99:2577,0,2176:41,37,45,48
chr1	152692588	.	A	G	1125.67	PASS	AC=1;AF=0.611;AN=2;DP=4682;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:136,82:218:99:1991,0,3584:75,61,37,45
chr1	152692781	.	G	T	1487.35	PASS	AC=1;AF=0.611;AN=2;DP=3756;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,87:188:99:2041,0,2702:43,58,40,47
chr1	152692862	.	G	C	1342.26	PASS	AC=1;AF=0.611;AN=2;DP=3180;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,64:137:99:1660,0,2065:28,45,26,38
chr1	152692948	.	T	A	1376.04	PASS	AC=1;AF=0.611;AN=2;DP=1858;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,42:76:99:1650,0,1244:11,23,15,27
chr1	152692952	.	G	A	1348.1	PASS	AC=1;AF=0.611;AN=2;DP=1771;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1663,0,1130:10,19,15,27
chr1	152730656	.	A	G	41.67	PASS	AC=1;AF=0.672;AN=2;DP=495;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:143,0,451:5,10,1,5
chr1	152732106	.	A	T	1961.86	PASS	AC=1;AF=0.536;AN=2;DP=1878;MQ=60;set=variant4-variant10-variant15-variant19-variant21-variant26-variant27-variant31-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,82:161:99:2098,0,2076:47,32,48,34
chr1	152732436	.	G	C	1323.71	PASS	AC=1;AF=0.657;AN=2;DP=4669;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,83:187:99:2223,0,2776:54,50,37,46
chr1	152733301	.	T	A	2001.06	PASS	AC=1;AF=0.657;AN=2;DP=10979;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:181,198:379:99:5053,0,4475:93,88,97,101
chr1	152734187	.	G	A	1445.16	PASS	AC=1;AF=0.667;AN=2;DP=2948;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,56:112:99:1232,0,1405:26,30,25,31
chr1	152734633	.	T	A	42.2	PASS	AC=1;AF=0.71;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:346,0,181:0,5,3,8
chr1	152749091	.	C	T	3253.32	PASS	AC=1;AF=0.538;AN=2;DP=2906;MQ=60;set=variant10-variant15-variant19-variant21-variant26-variant27-variant31-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,149:301:99:4059,0,3970:83,69,85,64
chr1	152758766	.	G	C	399.77	PASS	AC=1;AF=0.617;AN=2;DP=1111;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,23:33:99:603,0,228:7,3,13,10
chr1	152758915	.	G	T	205.92	PASS	AC=1;AF=0.533;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant16-variant19-variant21-variant26-variant27-variant31-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:283,0,258:1,7,3,8
chr1	152759678	.	C	T	1320.38	PASS	AC=1;AF=0.667;AN=2;DP=5620;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:114,88:202:99:2329,0,3209:81,33,63,25
chr1	152759950	.	A	G	1489.44	PASS	AC=1;AF=0.667;AN=2;DP=5936;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,101:202:99:3060,0,2827:57,44,51,50
chr1	152771293	.	A	G	768.97	PASS	AC=1;AF=0.632;AN=2;DP=2595;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1214,0,946:16,25,16,33
chr1	152777465	.	A	G	429.26	PASS	AC=1;AF=0.633;AN=2;DP=1978;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1432,0,1139:28,12,33,17
chr1	152777868	.	A	G	1344.66	PASS	AC=1;AF=0.633;AN=2;DP=4879;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:115,103:218:99:3380,0,3537:87,28,85,18
chr1	152777964	.	G	A	1738.21	PASS	AC=1;AF=0.617;AN=2;DP=9703;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:210,211:421:99:4622,0,4599:102,108,99,112
chr1	152882982	.	C	G,CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG	773.67	PASS	AC=0,2;AF=0.103,0.868;AN=2;DP=1807;set=variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant3-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant4-variant32-variant33-variant6-variant34-variant35-variant8-variant36-variant38-variant39-variant40-variant9-variant41-variant42-variant43	GT:DP:GQ:SB	2/2:19:88:0,0,12,7
chr1	152944594	.	C	T	1406.3	PASS	AC=1;AF=0.737;AN=2;DP=6722;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,126:237:99:3100,0,2796:59,52,65,61
chr1	152957573	.	T	C	300.5	PASS	AC=1;AF=0.629;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:349,0,371:11,6,9,3
chr1	152957832	.	C	A	493.88	PASS	AC=1;AF=0.636;AN=2;DP=2409;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,50:87:99:1275,0,955:15,22,25,25
chr1	152957887	.	G	A	473.52	PASS	AC=1;AF=0.632;AN=2;DP=2982;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,54:94:99:1567,0,1113:24,16,27,27
chr1	152974063	.	G	A	45.98	PASS	AC=1;AF=0.816;AN=2;DP=70;FS=0;MQ=60;set=variant-variant2-variant6-variant7-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant32-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:66:123,0,66:2,0,3,2
chr1	152974119	.	C	T	32.98	PASS	AC=1;AF=0.667;AN=2;DP=204;MQ=60;set=variant-variant2-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:198,0,148:4,1,5,2
chr1	152974247	.	C	G	326.41	PASS	AC=1;AF=0.625;AN=2;DP=639;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,10:33:99:327,0,1142:11,12,4,6
chr1	152974254	.	C	T	326.41	PASS	AC=1;AF=0.613;AN=2;DP=605;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,8:30:99:267,0,1148:10,12,3,5
chr1	152974285	.	A	G	197.45	PASS	AC=1;AF=0.661;AN=2;DP=523;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:196,0,575:7,13,3,6
chr1	152975277	.	G	A	1139.59	PASS	AC=1;AF=0.636;AN=2;DP=1553;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,25:60:99:864,0,1167:26,9,19,6
chr1	152975495	.	G	A	2039.17	PASS	AC=1;AF=0.636;AN=2;DP=8178;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,135:289:99:3242,0,3883:75,79,62,73
chr1	152975763	.	C	A	977.61	PASS	AC=1;AF=0.636;AN=2;DP=3104;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,45:105:99:1409,0,2264:36,24,25,20
chr1	152975829	.	A	G	1704	PASS	AC=1;AF=0.636;AN=2;DP=5411;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,84:189:99:2304,0,3392:57,48,47,37
chr1	152975941	.	C	G	1657.28	PASS	AC=1;AF=0.629;AN=2;DP=6647;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,106:226:99:2472,0,3104:56,64,50,56
chr1	152976108	.	C	T	4631.35	PASS	AC=1;AF=0.636;AN=2;DP=6552;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,125:239:99:5040,0,6827:62,52,77,48
chr1	152976114	.	G	C	4801.4	PASS	AC=1;AF=0.636;AN=2;DP=6857;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,134:249:99:5153,0,6871:62,53,83,51
chr1	152976306	.	T	G	3571.28	PASS	AC=1;AF=0.636;AN=2;DP=8881;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,150:306:99:3764,0,3893:57,99,58,92
chr1	153003803	.	AT	A	312.26	PASS	AC=1;AF=0.613;AN=2;DP=516;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:261,0,413:4,12,3,8
chr1	153003853	.	C	T	241.77	PASS	AC=1;AF=0.68;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:97:285,0,97:0,3,1,6
chr1	153003871	.	G	T	136.72	PASS	AC=2;AF=0.733;AN=2;DP=82;FS=0;MQ=60;set=variant-variant6-variant13-variant15-variant17-variant18-variant23-variant24-variant25-variant28-variant33-variant34-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,1,5
chr1	153004652	.	G	A	199.33	PASS	AC=1;AF=0.606;AN=2;DP=750;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:249,0,547:13,6,6,3
chr1	153004721	.	A	T	614.64	PASS	AC=1;AF=0.606;AN=2;DP=2324;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,48:91:99:1311,0,1156:27,16,32,16
chr1	153004778	.	C	T	734.75	PASS	AC=1;AF=0.606;AN=2;DP=3818;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,78:148:99:1792,0,1837:39,31,45,33
chr1	153004809	.	T	C	813.73	PASS	AC=1;AF=0.606;AN=2;DP=4327;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,82:158:99:1777,0,1709:40,36,42,40
chr1	153004848	.	T	C	1236.8	PASS	AC=1;AF=0.606;AN=2;DP=4223;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,62:137:99:2287,0,2953:39,36,25,37
chr1	153004853	.	C	T	1239.81	PASS	AC=1;AF=0.606;AN=2;DP=4169;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,59:134:99:2239,0,2920:40,35,23,36
chr1	153004941	.	CTGCCACCCCAAGGTGCCTGAGCCCTGCCACCCCAAAGTGCCCGAGCCCTGCCAGCCCAAGGTTCCAGAGCCA	C	2051.7	PASS	AC=1;AF=0.5;AN=2;DP=525;set=variant4-variant15-variant21	GT:AD:DP:GQ:PL:SB	0/1:76,82:158:99:1732,0,2920:42,34,35,47
chr1	153004983	.	C	T	509.23	PASS	AC=1;AF=0.606;AN=2;DP=2901;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-filterInvariant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,42:122:99:1022,0,1826:35,45,26,16
chr1	153005156	.	C	T	1325.87	PASS	AC=1;AF=0.606;AN=2;DP=5994;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,108:246:99:2326,0,3500:71,67,51,57
chr1	153012354	.	T	G	463.45	PASS	AC=1;AF=0.6;AN=2;DP=1573;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:1177,0,1055:10,11,15,15
chr1	153012356	.	C	T	463.45	PASS	AC=1;AF=0.6;AN=2;DP=1560;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:1177,0,1055:10,11,15,14
chr1	153013630	.	G	C,A	454.22	PASS	AC=1,0;AF=0.6,0.014;AN=2;DP=2135;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:91:99:21,27,20,23
chr1	153013742	.	G	T	127.69	PASS	AC=1;AF=0.609;AN=2;DP=399;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:421,0,198:1,6,2,11
chr1	153014082	.	T	A	254.87	PASS	AC=1;AF=0.615;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:232,0,227:6,1,6,1
chr1	153029137	.	C	T	557.87	PASS	AC=1;AF=0.597;AN=2;DP=1249;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:844,0,643:11,8,11,15
chr1	153044009	.	G	A	215.07	PASS	AC=1;AF=0.594;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,29:43:99:836,0,300:9,5,21,8
chr1	153044071	.	C	A	628.07	PASS	AC=1;AF=0.594;AN=2;DP=2335;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,48:83:99:1265,0,838:18,17,28,20
chr1	153065581	.	T	C	117.92	PASS	AC=1;AF=0.593;AN=2;DP=527;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:429,0,323:8,4,12,2
chr1	153066262	.	T	C	661.97	PASS	AC=1;AF=0.515;AN=2;DP=3787;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,30:127:99:460,0,2549:44,53,16,14
chr1	153084795	.	G	C	469.48	PASS	AC=1;AF=0.646;AN=2;DP=637;FractionInformativeReads=1;set=variant4-variant5-variant6-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant36-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:454,0,327:6,6,6,10
chr1	153113275	.	C	T	503.25	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:372,0,717:1,19,1,10
chr1	153113913	.	A	G	702.39	PASS	AC=1;AF=0.764;AN=2;DP=2820;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,40:102:99:962,0,1416:35,27,26,14
chr1	153122171	.	G	A	788.1	PASS	AC=1;AF=0.736;AN=2;DP=1817;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:618,0,719:14,14,12,14
chr1	153122310	.	G	A	1294.69	PASS	AC=1;AF=0.729;AN=2;DP=3787;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,77:132:99:2144,0,1412:35,20,49,28
chr1	153122620	.	T	C	1120.78	PASS	AC=1;AF=0.736;AN=2;DP=4626;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,75:169:99:1803,0,2379:41,53,35,40
chr1	153189978	.	A	G	270.03	PASS	AC=1;AF=0.617;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant16-variant19-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:497,0,138:5,3,9,10
chr1	153233510	.	A	G	439.29	PASS	AC=2;AF=0.696;AN=2;DP=1362;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant15-variant17-variant19-variant22-variant23-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2219,198,0:0,0,26,40
chr1	153233991	.	A	ACTCTGGCGGCGG	862.95	PASS	AC=2;AF=0.762;AN=2;DP=2681;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2850,192,0:0,0,31,27
chr1	153234602	.	T	C	315.51	PASS	AC=2;AF=0.762;AN=2;DP=1316;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1590,138,0:0,0,12,34
chr1	153270362	.	C	G	244.3	PASS	AC=1;AF=0.615;AN=2;DP=1256;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,34:59:99:919,0,673:16,9,17,17
chr1	153270857	.	T	C	222.45	PASS	AC=2;AF=0.632;AN=2;DP=792;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1077,93,0:0,0,7,24
chr1	153271524	.	C	T	349.25	PASS	AC=2;AF=0.618;AN=2;DP=1908;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2069,196,0:0,0,46,20
chr1	153277423	.	C	T	1568.7	PASS	AC=1;AF=0.615;AN=2;DP=3024;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,77:147:99:2081,0,1630:34,36,34,43
chr1	153277660	.	A	T	546.44	PASS	AC=1;AF=0.635;AN=2;DP=1074;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:806,0,458:5,12,10,19
chr1	153277768	.	C	T	92.19	PASS	AC=1;AF=0.7;AN=2;DP=162;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant11-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:101,0,145:1,4,1,3
chr1	153279462	.	TAAG	T	2844.21	PASS	AC=1;AF=0.808;AN=2;DP=2793;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,49:105:99:1863,0,2746:37,19,27,22
chr1	153279696	.	C	T	253.42	PASS	AC=1;AF=0.5;AN=2;DP=515;MQ=60;set=variant-variant3-variant5-variant9-variant15-variant20-variant22-variant27-variant30-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:18,35:53:99:888,0,450:3,15,13,22
chr1	153282892	.	C	T	279.29	PASS	AC=1;AF=0.596;AN=2;DP=667;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:552,0,741:19,5,15,7
chr1	153283004	.	C	T	3566.18	PASS	AC=1;AF=0.833;AN=2;DP=4691;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,67:155:99:1764,0,2265:55,33,39,28
chr1	153302827	.	T	G	3980.05	PASS	AC=1;AF=0.825;AN=2;DP=4380;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,60:118:99:1696,0,1649:18,40,15,45
chr1	153310001	.	A	T	395.76	PASS	AC=1;AF=0.5;AN=2;DP=340;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant15-variant20-variant22-variant27-variant30-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:591,0,580:10,13,6,14
chr1	153312644	.	A	G	719.91	PASS	AC=2;AF=0.929;AN=2;DP=2090;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1729,165,0:0,0,36,19
chr1	153313044	.	C	T	112.44	PASS	AC=1;AF=0.5;AN=2;DP=449;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant15-variant20-variant22-variant27-variant30-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:369,0,544:2,14,4,10
chr1	153313912	.	A	G	255.13	PASS	AC=1;AF=0.824;AN=2;DP=390;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:181,0,182:4,3,4,1
chr1	153314153	.	C	A	1547.96	PASS	AC=1;AF=0.8;AN=2;DP=2713;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:879,0,1154:25,18,17,21
chr1	153314347	.	C	T	465.43	PASS	AC=1;AF=0.808;AN=2;DP=583;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:313,0,376:1,10,3,8
chr1	153315467	.	T	TAAG	359.93	PASS	AC=2;AF=0.929;AN=2;DP=1118;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:81:1215,81,0:0,0,20,6
chr1	153315579	.	A	G	594.95	PASS	AC=2;AF=0.929;AN=2;DP=3980;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2778,251,0:0,0,46,38
chr1	153315784	.	T	C	469.53	PASS	AC=2;AF=0.929;AN=2;DP=1605;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1316,117,0:0,0,12,27
chr1	153318451	.	C	T	357.7	PASS	AC=1;AF=0.5;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant15-variant20-variant22-variant27-variant30-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:400,0,603:16,5,11,3
chr1	153320159	.	G	C	102.99	PASS	AC=1;AF=0.853;AN=2;DP=303;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:151,0,151:3,1,4,1
chr1	153320334	.	T	C	1524.15	PASS	AC=1;AF=0.8;AN=2;DP=2452;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,26:69:99:658,0,1127:24,19,15,11
chr1	153320372	.	T	G	1879.53	PASS	AC=1;AF=0.8;AN=2;DP=3191;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,30:80:99:700,0,1331:29,21,15,15
chr1	153320401	.	G	A	759.02	PASS	AC=1;AF=0.5;AN=2;DP=1146;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant15-variant20-variant22-variant27-variant30-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:36,53:89:99:1296,0,852:18,18,27,26
chr1	153320581	.	T	C	363.46	PASS	AC=1;AF=0.8;AN=2;DP=773;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:303,0,186:3,5,2,8
chr1	153321010	.	C	A	706.98	PASS	AC=1;AF=0.8;AN=2;DP=1217;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:536,0,288:7,6,11,7
chr1	153321197	.	T	G	1957.08	PASS	AC=1;AF=0.8;AN=2;DP=1966;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:620,0,568:12,12,7,16
chr1	153321217	.	G	GAGA	2205.09	PASS	AC=1;AF=0.8;AN=2;DP=1617;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:512,0,925:9,11,3,11
chr1	153321348	.	G	T	142.99	PASS	AC=1;AF=0.829;AN=2;DP=437;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:253,0,452:2,5,2,5
chr1	153321368	.	CCAGGTAGCT	C	142.73	PASS	AC=1;AF=0.833;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:186,0,536:2,6,1,4
chr1	153321407	.	C	T	94.88	PASS	AC=1;AF=0.868;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,197:0,3,1,2
chr1	153321413	.	C	G	91.72	PASS	AC=1;AF=0.867;AN=2;DP=156;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,197:0,3,1,2
chr1	153362788	.	T	C	1297.65	PASS	AC=1;AF=0.553;AN=2;DP=1650;MQ=60;set=variant3-variant5-variant8-variant14-variant15-variant17-variant21-variant25-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,44:87:99:1269,0,1234:24,19,21,23
chr1	153362824	.	C	G	1358.32	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1387,0,1090:23,17,29,16
chr1	153363351	.	G	C	436.43	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;MQ=60;set=variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:465,0,650:13,13,12,6
chr1	153390411	.	T	TA	570.61	PASS	AC=2;AF=0.875;AN=2;DP=1058;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:81:801,81,0:0,0,18,8
chr1	153410822	.	C	A	4761.48	PASS	AC=2;AF=0.813;AN=2;DP=5344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4508,443,0:0,0,65,83
chr1	153411867	.	G	A	223.58	PASS	AC=2;AF=0.813;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:375,30,0:0,0,2,8
chr1	153412392	.	T	G	2025.58	PASS	AC=2;AF=0.884;AN=2;DP=4993;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4829,477,0:0,0,87,72
chr1	153430249	.	TG	T	1668.68	PASS	AC=1;AF=0.63;AN=2;DP=3908;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant33-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,90:178:99:2561,0,2398:46,42,50,40
chr1	153431200	.	T	C	1980.81	PASS	AC=2;AF=0.884;AN=2;DP=2956;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2561,213,0:0,0,54,17
chr1	153431406	.	C	G	5055.4	PASS	AC=2;AF=0.977;AN=2;DP=7962;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,237:237:99:7413,711,0:0,0,106,131
chr1	153432265	.	C	G	1870.3	PASS	AC=2;AF=0.884;AN=2;DP=2593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2224,204,0:0,0,37,31
chr1	153507959	.	G	C	666.72	PASS	AC=2;AF=0.625;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3746,362,0:0,0,49,72
chr1	153509892	.	A	G	1604.43	PASS	AC=2;AF=0.625;AN=2;DP=748;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:1,210:211:99:6312,597,0:1,0,88,122
chr1	153514241	.	A	C	188.42	PASS	AC=2;AF=0.625;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:280,30,0:0,0,5,5
chr1	153517092	.	GC	G	853.82	PASS	AC=2;AF=0.667;AN=2;DP=252;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2857,250,0:0,0,62,21
chr1	153517172	.	T	C	2217.33	PASS	AC=2;AF=0.667;AN=2;DP=609;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,227:227:99:6548,679,0:0,0,129,98
chr1	153517519	.	G	A	1901.21	PASS	AC=2;AF=0.6;AN=2;DP=646;MQ=60;set=variant5-variant11-variant13-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:1,160:161:99:4753,445,0:1,0,79,81
chr1	153519941	.	G	A	539.08	PASS	AC=2;AF=0.667;AN=2;DP=380;MQ=60;set=variant5-variant8-variant15-variant17-variant22-variant23	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2292,207,0:0,0,36,33
chr1	153519981	.	C	G	405.96	PASS	AC=2;AF=0.667;AN=2;DP=199;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2264,221,0:0,0,43,31
chr1	153520138	.	C	T	1260.88	PASS	AC=2;AF=0.667;AN=2;DP=394;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:5068,450,0:0,0,99,51
chr1	153520203	.	G	A	1744.56	PASS	AC=2;AF=0.667;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,241:241:99:7181,720,0:0,0,126,115
chr1	153520400	.	T	C	485.51	PASS	AC=2;AF=0.667;AN=2;DP=217;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2539,207,0:0,0,16,53
chr1	153520714	.	T	TC	142.41	PASS	AC=2;AF=0.667;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1209,108,0:0,0,24,12
chr1	153520784	.	C	A	1512.45	PASS	AC=2;AF=0.667;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:4712,325,0:0,0,68,38
chr1	153520790	.	G	C	1583.63	PASS	AC=2;AF=0.6;AN=2;DP=528;MQ=60;set=variant5-variant11-variant13-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:4946,349,0:0,0,70,45
chr1	153520804	.	A	G	1249.8	PASS	AC=2;AF=0.667;AN=2;DP=382;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4178,412,0:0,0,81,57
chr1	153520954	.	C	T	1273.69	PASS	AC=2;AF=0.667;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3713,376,0:0,0,45,81
chr1	153521018	.	A	C	738.46	PASS	AC=2;AF=0.667;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1841,159,0:0,0,14,39
chr1	153521472	.	C	T	159.2	PASS	AC=2;AF=0.667;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:365,36,0:0,0,5,7
chr1	153521496	.	G	C	186.87	PASS	AC=2;AF=0.667;AN=2;DP=63;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:411,39,0:0,0,6,7
chr1	153521525	.	G	A	402.76	PASS	AC=2;AF=0.667;AN=2;DP=106;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:700,63,0:0,0,13,8
chr1	153521653	.	T	C	1018.18	PASS	AC=2;AF=0.667;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1601,165,0:0,0,32,23
chr1	153522437	.	G	T	169.41	PASS	AC=2;AF=0.667;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:559,48,0:0,0,12,4
chr1	153533898	.	A	G	1015.27	PASS	AC=2;AF=0.6;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3120,315,0:0,0,60,45
chr1	153534027	.	C	T	744.79	PASS	AC=2;AF=0.6;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2705,261,0:0,0,38,49
chr1	153538449	.	C	T	214.45	PASS	AC=2;AF=0.826;AN=2;DP=628;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:558,45,0:0,0,5,10
chr1	153540186	.	C	A	330.76	PASS	AC=2;AF=0.6;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant15-variant17-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:875,89,0:0,0,20,10
chr1	153540320	.	C	T	677.12	PASS	AC=2;AF=0.583;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2422,243,0:0,0,38,43
chr1	153585584	.	G	A	715.34	PASS	AC=2;AF=0.652;AN=2;DP=1320;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1683,174,0:0,0,26,32
chr1	153587256	.	A	T	1945.69	PASS	AC=2;AF=0.657;AN=2;DP=2926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2158,206,0:0,0,30,39
chr1	153587308	.	C	T	1543.77	PASS	AC=2;AF=0.697;AN=2;DP=2748;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2212,215,0:0,0,39,33
chr1	153588208	.	G	A	271.52	PASS	AC=2;AF=0.657;AN=2;DP=844;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1208,99,0:0,0,27,6
chr1	153588279	.	G	A	1331.4	PASS	AC=2;AF=0.657;AN=2;DP=2574;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3250,324,0:0,0,67,41
chr1	153588843	.	G	A	841.59	PASS	AC=2;AF=0.657;AN=2;DP=1659;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1585,163,0:0,0,22,33
chr1	153589205	.	G	GTCTC,GTC	94.2	PASS	AC=2,0;AF=0.866,0.11;AN=2;DP=354;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:5:15:0,0,5,0
chr1	153600778	.	G	A	1193.19	PASS	AC=2;AF=0.662;AN=2;DP=1642;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2357,185,0:0,0,51,11
chr1	153602861	.	G	C	1468.17	PASS	AC=2;AF=0.681;AN=2;DP=2335;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2420,225,0:0,0,47,28
chr1	153604029	.	C	T	4554.55	PASS	AC=2;AF=0.841;AN=2;DP=5734;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4412,440,0:0,0,72,75
chr1	153604112	.	G	A	3818.35	PASS	AC=2;AF=0.714;AN=2;DP=4969;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4581,451,0:0,0,76,76
chr1	153604422	.	T	C	238.52	PASS	AC=2;AF=0.696;AN=2;DP=291;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:318,27,0:0,0,1,8
chr1	153604519	.	G	A	832.03	PASS	AC=2;AF=0.7;AN=2;DP=1128;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1293,122,0:0,0,27,14
chr1	153606387	.	G	A	373.66	PASS	AC=2;AF=0.7;AN=2;DP=781;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,18:19:19:604,19,0:1,0,14,4
chr1	153606851	.	A	G	902.31	PASS	AC=2;AF=0.722;AN=2;DP=1628;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1827,144,0:0,0,9,39
chr1	153609039	.	T	C	1858.34	PASS	AC=2;AF=0.7;AN=2;DP=1947;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2298,248,0:0,0,47,36
chr1	153616857	.	T	C	1857.24	PASS	AC=2;AF=0.7;AN=2;DP=1373;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1872,135,0:0,0,5,40
chr1	153617773	.	C	G	993.55	PASS	AC=1;AF=0.5;AN=2;DP=782;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant19-variant22-variant24-variant33-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,51:121:99:1277,0,1766:33,37,25,26
chr1	153618766	.	C	T	9786.38	PASS	AC=2;AF=0.7;AN=2;DP=8640;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,290:291:99:9353,861,0:0,1,94,196
chr1	153618837	.	GT	G,GTT	1165.19	PASS	AC=2,0;AF=0.588,0.038;AN=2;DP=3421;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	1/1:70:99:1,4,9,56
chr1	153631071	.	G	A	1978.91	PASS	AC=1;AF=0.654;AN=2;DP=3315;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:73,85:158:99:2042,0,1857:47,26,54,31
chr1	153634058	.	G	T	723.56	PASS	AC=2;AF=0.7;AN=2;DP=781;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:803,75,0:0,0,16,9
chr1	153635425	.	G	A	1617.53	PASS	AC=2;AF=0.686;AN=2;DP=1683;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2488,195,0:0,0,27,38
chr1	153636468	.	CTA	C	1023.02	PASS	AC=2;AF=0.625;AN=2;DP=561;set=variant-variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1271,101,0:0,0,25,9
chr1	153636471	.	CT	C	1023.12	PASS	AC=2;AF=0.625;AN=2;DP=581;set=variant-variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1271,101,0:0,0,25,9
chr1	153636860	.	A	G	6602.13	PASS	AC=2;AF=0.686;AN=2;DP=7041;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,242:242:99:7426,724,0:0,0,126,116
chr1	153637617	.	G	A	1201.77	PASS	AC=2;AF=0.65;AN=2;DP=1156;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,45:47:91:1483,91,0:1,1,31,14
chr1	153640665	.	G	A	918.68	PASS	AC=2;AF=0.65;AN=2;DP=445;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:726,54,0:0,0,14,4
chr1	153641058	.	T	C	1787.81	PASS	AC=1;AF=0.5;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:82,66:148:99:1696,0,2168:31,51,28,38
chr1	153642835	.	G	C	4100.52	PASS	AC=2;AF=0.977;AN=2;DP=5174;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,153:155:99:4778,444,0:2,0,65,88
chr1	153642909	.	A	G	2497.78	PASS	AC=2;AF=0.65;AN=2;DP=1981;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2470,224,0:0,0,25,50
chr1	153651269	.	TTCTCTCTCTC	TTCTCTCTC,T,TTCTCTCTCTCTC,TTCTCTC	3503.19	PASS	AC=2,0,0,0;AF=0.569,0.014,0.028,0.028;AN=2;DP=4267;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	1/1:122:99:0,1,62,59
chr1	153656352	.	T	G	1744.83	PASS	AC=2;AF=0.661;AN=2;DP=1219;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1851,153,0:0,0,18,33
chr1	153660514	.	AC	A	647.02	PASS	AC=2;AF=0.65;AN=2;DP=675;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:872,84,0:0,0,20,8
chr1	153661374	.	CG	C	3143.26	PASS	AC=2;AF=0.65;AN=2;DP=3144;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4871,394,0:0,0,76,55
chr1	153662584	.	GTCTCTCTC	GTCTCTC,GTCTC,G,GTCTCTCTCTC	77.04	PASS	AC=2,0,0,0;AF=0.615,0.077,0.077,0.077;AN=2;DP=101;FS=0;set=variant7-variant12-variant13-variant15-variant20-variant22-variant27-variant29-variant34-variant35-variant37-variant41-variant44	GT:DP:GQ:SB	1/1:7:20:0,0,4,3
chr1	153662617	.	T	A	100.1	PASS	AC=2;AF=0.833;AN=2;DP=86;FS=0;set=variant7-variant12-variant15-variant22-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:313,30,0:0,0,6,4
chr1	153665919	.	T	TC	2794.35	PASS	AC=2;AF=0.662;AN=2;DP=3757;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3673,331,0:0,0,51,59
chr1	153666248	.	GAGAA	G	631.46	PASS	AC=1;AF=0.5;AN=2;DP=393;MQ=60;set=variant-variant15-variant19-variant22-variant24-variant33-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,28:71:99:1047,0,2464:19,24,10,18
chr1	153700841	.	A	G	2598.18	PASS	AC=2;AF=0.977;AN=2;DP=4645;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3869,377,0:0,0,67,59
chr1	153701376	.	G	C	424.22	PASS	AC=2;AF=1;AN=2;DP=530;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:517,48,0:0,0,9,7
chr1	153731750	.	GAAA	GAA,GA,GAAAA,G	256.6	PASS	AC=1,0,0,0;AF=0.556,0.019,0.056,0.019;AN=2;DP=474;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-filterInvariant15-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:25:80:14,5,4,2
chr1	153743234	.	T	C	738.78	PASS	AC=1;AF=0.615;AN=2;DP=2125;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant13-variant15-variant18-variant20-variant21-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,51:87:99:1288,0,768:17,19,28,23
chr1	153743317	.	G	A	1789.09	PASS	AC=1;AF=0.641;AN=2;DP=2198;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,32:83:99:665,0,1250:21,30,14,18
chr1	153750207	.	C	CCTT	871.3	PASS	AC=1;AF=0.593;AN=2;DP=2488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:2032,0,2769:27,22,32,17
chr1	153750214	.	TC	T	893.95	PASS	AC=1;AF=0.571;AN=2;DP=2853;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,53:106:99:1984,0,2876:30,23,35,18
chr1	153777417	.	C	T	1341.97	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=2.365;FractionInformativeReads=1;MQ=60;MQRankSum=-1.482;QD=10.32;ReadPosRankSum=-0.621;SOR=0.931;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1370,0,1768:26,46,18,40
chr1	153777549	.	A	C	97.24	PASS	AC=1;AF=0.5;AN=2;DP=39;MQ=60;set=variant15-variant20-variant27	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:125,0,470:2,9,5,0
chr1	153777556	.	A	C	82.66	PASS	AC=1;AF=0.5;AN=2;DP=36;FractionInformativeReads=1;MQ=60;set=variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:99:111,0,604:7,9,4,0
chr1	153779236	.	C	T	1777.86	PASS	AC=1;AF=0.5;AN=2;DP=528;MQ=60;set=variant4-variant12-variant15-variant28-variant33	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1817,0,2181:49,19,44,15
chr1	153779629	.	C	T	1040.45	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.163;FractionInformativeReads=1;MQ=60;MQRankSum=0.629;QD=18.58;ReadPosRankSum=0.629;SOR=0.99;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:22,34:56:99:1069,0,686:7,15,9,25
chr1	153781275	.	TAA	TA,TAAA,TAAAA,T	31.36	PASS	AC=0,1,0,0;AF=0.233,0.2,0.033,0.033;AN=2;DP=305;set=filterInvariant2-variant3-variant7-variant12-variant13-variant15-variant17-variant26-filterInvariant28-variant32-variant36-variant37-filterInvariant38-variant39-variant44	GT:DP:GQ:SB	0/2:19:85:3,5,6,5
chr1	153782011	.	C	T	1272.03	PASS	AC=1;AF=0.5;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant28-variant33	GT:AD:DP:GQ:PL:SB	0/1:37,48:85:99:1120,0,965:18,19,22,26
chr1	153782188	.	CA	C,CAA,CAAA,CAAAAA	161.02	PASS	AC=0,1,0,0;AF=0.288,0.154,0.038,0.019;AN=2;DP=2369;set=filterInvariant-filterInvariant2-filterInvariant4-filterInvariant6-variant9-filterInvariant10-variant14-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant25-variant27-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant38-variant39-variant40-filterInvariant41	GT:DP:GQ:SB	0/2:94:99:37,27,16,14
chr1	153784666	.	CTT	CTTT,CT,C,CTTTT	280.89	PASS	AC=0,1,0,0;AF=0.182,0.466,0.023,0.011;AN=2;DP=1866;set=Intersection	GT:DP:GQ:SB	0/2:31:99:5,9,4,13
chr1	153790790	.	CTTT	CTT,C,CT,CTTTT	142.98	PASS	AC=0,0,1,0;AF=0.5,0.019,0.148,0.019;AN=2;DP=436;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/3:10:99:1,4,0,5
chr1	153792297	.	G	A	198.09	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant16-variant27-variant30-variant31-variant39	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:364,0,226:3,6,3,8
chr1	153800931	.	TACACACACAC	TACAC,TAC,TACACACACACAC,TACACACACACACAC,T	206.46	PASS	AC=0,0,0,2,0;AF=0.016,0.484,0.194,0.113,0.032;AN=2;DP=292;FS=0;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:2:6:0,0,0,2
chr1	153906397	.	A	G	1149.2	PASS	AC=2;AF=0.676;AN=2;DP=2049;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2203,227,0:0,0,33,43
chr1	153907305	.	G	GC	3345.86	PASS	AC=1;AF=0.5;AN=2;DP=1503;set=variant6-variant15-variant16-variant27-variant30-variant31-variant39	GT:AD:DP:GQ:PL:SB	0/1:143,59:202:99:1666,0,7198:87,56,36,23
chr1	153907306	.	T	TGC	3344.46	PASS	AC=1;AF=0.5;AN=2;DP=1543;set=variant6-variant15-variant16-variant27-variant30-variant31-variant39	GT:AD:DP:GQ:PL:SB	0/1:144,84:228:99:2604,0,6853:88,56,50,34
chr1	153913684	.	C	A	457.73	PASS	AC=1;AF=0.5;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant13-variant15-variant28-variant33	GT:AD:DP:GQ:PL:SB	0/1:31,44:75:99:1095,0,781:18,13,25,19
chr1	153913770	.	A	G	1492.64	PASS	AC=2;AF=0.676;AN=2;DP=3012;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2808,293,0:0,0,44,54
chr1	153935543	.	G	A	557.71	PASS	AC=1;AF=0.5;AN=2;DP=202;MQ=60;set=variant4-variant12-variant13-variant15-variant28-variant33	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:461,0,439:10,6,9,7
chr1	153940144	.	GA	G	249.81	PASS	AC=2;AF=0.683;AN=2;DP=516;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:317,33,0:0,0,8,3
chr1	153940739	.	A	C	1124.1	PASS	AC=2;AF=0.672;AN=2;DP=1028;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:812,77,0:0,0,13,13
chr1	153954674	.	T	C	2210.62	PASS	AC=2;AF=0.667;AN=2;DP=2250;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2160,219,0:0,0,33,40
chr1	153954778	.	AACACAC	AACAC,AAC,AACACACAC,A	34.33	PASS	AC=1,1,0,0;AF=0.339,0.089,0.089,0.036;AN=2;DP=909;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-variant33-filterInvariant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	2/1:24:78:0,0,18,6
chr1	153964396	.	C	CAA	3504.54	PASS	AC=2;AF=0.683;AN=2;DP=2355;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:4414,298,0:0,0,57,40
chr1	154026642	.	A	G	552.31	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant13-variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:401,0,445:11,3,11,3
chr1	154031217	.	A	G	475.57	PASS	AC=1;AF=0.591;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant11-variant15-variant16-variant18-variant27-variant28-variant30-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:667,0,552:6,15,5,18
chr1	154061855	.	T	G	2099.84	PASS	AC=2;AF=1;AN=2;DP=2668;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2216,222,0:0,0,42,32
chr1	154108387	.	G	A	1800.65	PASS	AC=2;AF=1;AN=2;DP=2519;FS=0;MQ=60;MQRankSum=1.209;ReadPosRankSum=1.536;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2261,228,0:0,0,33,43
chr1	154112163	.	CA	C	44.01	PASS	AC=1;AF=0.5;AN=2;DP=52;MQ=60;set=variant9-variant15-filterInvariant33	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:86:86,0,97:4,2,3,2
chr1	154127736	.	A	G	334.28	PASS	AC=1;AF=0.5;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:339,0,353:4,8,2,9
chr1	154127820	.	T	C	285.08	PASS	AC=1;AF=0.5;AN=2;DP=105;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:71:71,0,440:9,6,2,2
chr1	154128328	.	GTTCT	G	5218.75	PASS	AC=1;AF=0.545;AN=2;DP=4736;MQ=60;set=variant6-variant11-variant13-variant15-variant16-variant18-variant27-variant28-variant30-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:244,242:486:99:9367,0,14244:109,135,105,137
chr1	154128340	.	C	G	8468.99	PASS	AC=1;AF=0.545;AN=2;DP=4387;FractionInformativeReads=1;MQ=60;set=variant6-variant11-variant13-variant15-variant16-variant18-variant27-variant28-variant30-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:232,240:472:99:9469,0,13798:104,128,102,138
chr1	154128672	.	G	A	1887.93	PASS	AC=2;AF=0.735;AN=2;DP=1929;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2291,222,0:0,0,48,26
chr1	154141908	.	A	G	2065.56	PASS	AC=2;AF=0.708;AN=2;DP=3146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3577,351,0:0,0,49,68
chr1	154144060	.	T	TAG	1197.97	PASS	AC=1;AF=0.55;AN=2;DP=801;MQ=60;set=variant6-variant11-variant15-variant16-variant18-variant27-variant28-variant30-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:32,44:76:99:1555,0,1068:15,17,18,26
chr1	154144681	.	A	T	2340.91	PASS	AC=1;AF=0.5;AN=2;DP=566;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:83,77:160:99:2185,0,2212:53,30,52,25
chr1	154145532	.	C	G	2187.78	PASS	AC=1;AF=0.5;AN=2;DP=647;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:79,57:136:99:1579,0,2103:41,38,27,30
chr1	154150448	.	C	A	195.88	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:95:95,0,198:5,2,3,3
chr1	154163526	.	G	C	141.51	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:568,0,450:12,2,15,0
chr1	154164082	.	C	T	209.75	PASS	AC=1;AF=0.5;AN=2;DP=80;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:188,0,364:8,5,6,2
chr1	154179679	.	T	C	1058.59	PASS	AC=1;AF=0.719;AN=2;DP=1125;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:780,0,485:11,7,14,12
chr1	154192143	.	G	A	2222.75	PASS	AC=2;AF=0.736;AN=2;DP=2546;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2554,236,0:0,0,58,21
chr1	154192463	.	G	GT,GTT	968.63	PASS	AC=2,0;AF=0.722,0.014;AN=2;DP=1326;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:36:99:0,0,10,26
chr1	154199543	.	T	C	767.12	PASS	AC=2;AF=0.989;AN=2;DP=897;MQRankSum=-0.106;ReadPosRankSum=-0.951;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:804,60,0:0,0,18,2
chr1	154207635	.	G	T	125.65	PASS	AC=1;AF=0.5;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant15-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:416,0,242:7,2,10,5
chr1	154207898	.	A	G	244.65	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=6.368;FractionInformativeReads=1;MQ=60;MQRankSum=-1.936;QD=17.48;ReadPosRankSum=-0.91;SOR=2.833;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,232:2,5,0,7
chr1	154208877	.	A	G	788.04	PASS	AC=1;AF=0.726;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:191,0,137:3,2,5,2
chr1	154209169	.	A	T	153.11	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:180,0,309:4,6,2,5
chr1	154209490	.	T	C	1034.46	PASS	AC=1;AF=0.5;AN=2;DP=411;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant15-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:930,0,1379:33,18,24,15
chr1	154218550	.	CT	C	651.65	PASS	AC=2;AF=0.743;AN=2;DP=672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:723,63,0:0,0,17,4
chr1	154218639	.	TTCAG	T	2880.39	PASS	AC=1;AF=0.719;AN=2;DP=2034;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,28:79:99:1015,0,2036:27,24,17,11
chr1	154227239	.	C	A	2441.57	PASS	AC=2;AF=0.73;AN=2;DP=2143;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2108,177,0:0,0,45,14
chr1	154227292	.	G	GT,GTT	1867.75	PASS	AC=1,1;AF=0.566,0.092;AN=2;DP=4597;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:105:99:8,5,56,36
chr1	154228287	.	T	C	1271.21	PASS	AC=2;AF=0.743;AN=2;DP=1896;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1819,174,0:0,0,19,39
chr1	154231675	.	C	CT	95.44	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:205,0,150:0,7,1,8
chr1	154232610	.	A	G	659.84	PASS	AC=1;AF=0.5;AN=2;DP=299;MQ=60;set=variant4-variant5-variant12-variant15-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:979,0,806:13,20,11,25
chr1	154235657	.	G	A	1071.37	PASS	AC=1;AF=0.611;AN=2;DP=810;MQ=60;set=variant6-variant15-variant16-variant18-variant20-variant27-variant28-variant30-variant39	GT:AD:DP:GQ:PL:SB	0/1:70,55:125:99:1330,0,1821:37,33,32,23
chr1	154236009	.	G	C	111.22	PASS	AC=2;AF=0.788;AN=2;DP=250;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:223,18,0:0,0,1,5
chr1	154239256	.	G	C	65.9	PASS	AC=1;AF=0.563;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant16-variant18-variant27-variant28-variant30-variant39	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:72:191,0,72:2,2,1,4
chr1	154243097	.	G	A	1003.95	PASS	AC=1;AF=0.5;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant8-variant12-variant15-variant23-variant30-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:1265,0,1943:13,21,18,16
chr1	154243115	.	C	T	841.83	PASS	AC=1;AF=0.625;AN=2;DP=1851;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1465,0,1916:15,19,20,21
chr1	154243246	.	G	T,GTT	406.54	PASS	AC=0,1;AF=0.4,0.2;AN=2;DP=169;set=variant12-variant15-variant28-variant31-variant35	GT:DP:GQ:SB	0/2:30:99:3,10,14,3
chr1	154245142	.	T	G	2603.07	PASS	AC=1;AF=0.5;AN=2;DP=1781;MQ=60;set=variant4-variant5-variant8-variant12-variant15-variant23-variant30-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,97:205:99:2282,0,2723:49,59,46,51
chr1	154245512	.	A	G	103.72	PASS	AC=1;AF=0.63;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:338,0,123:1,4,4,7
chr1	154245626	.	TAA	TA,T	98.55	PASS	AC=1,0;AF=0.411,0.089;AN=2;DP=1006;set=variant-variant2-variant3-filterInvariant5-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant27-variant29-filterInvariant31-variant32-variant33-filterInvariant35-variant36-variant37-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:35:99:8,4,17,6
chr1	154284894	.	A	G	410.98	PASS	AC=1;AF=0.5;AN=2;DP=557;FractionInformativeReads=1;set=variant3-variant4-variant7-variant12-variant15-variant22-variant23-variant25-variant28-variant32-variant36-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:410,0,747:17,10,8,8
chr1	154285052	.	G	A	406.31	PASS	AC=1;AF=0.646;AN=2;DP=1012;set=variant5-variant6-variant7-variant9-variant14-variant15-variant16-variant17-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:425,0,458:9,9,7,11
chr1	154285078	.	T	G	358.22	PASS	AC=2;AF=0.697;AN=2;DP=1159;set=variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:950,101,0:0,0,15,19
chr1	154285390	.	A	T	162.19	PASS	AC=2;AF=0.658;AN=2;DP=426;set=variant3-variant6-variant7-variant12-variant15-variant16-filterInvariant18-variant20-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:830,63,0:0,0,14,7
chr1	154285487	.	A	G	1601.87	PASS	AC=2;AF=0.625;AN=2;DP=1833;FractionInformativeReads=1;set=variant3-variant4-variant6-variant7-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2990,202,0:0,0,44,22
chr1	154285494	.	C	T	1705.55	PASS	AC=2;AF=0.625;AN=2;DP=1946;FractionInformativeReads=1;set=variant3-variant4-variant6-variant7-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3008,205,0:0,0,45,23
chr1	154285522	.	G	A	1366.14	PASS	AC=2;AF=0.625;AN=2;DP=2471;set=variant3-variant4-variant6-variant7-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2734,267,0:0,0,52,37
chr1	154293675	.	G	A	1281.17	PASS	AC=1;AF=0.543;AN=2;DP=2147;set=variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant25-variant26-variant27-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1593,0,1649:33,35,28,31
chr1	154294464	.	A	G	184.54	PASS	AC=1;AF=0.5;AN=2;DP=486;FractionInformativeReads=1;set=filterInvariant15-filterInvariant22-filterInvariant28-variant42	GT:AD:DP:GQ:PL:SB	0/1:125,16:141:99:213,0,7137:71,54,7,9
chr1	154294471	.	C	T	143.38	PASS	AC=1;AF=0.5;AN=2;DP=371;FractionInformativeReads=1;set=filterInvariant15-filterInvariant28-variant42	GT:AD:DP:GQ:PL:SB	0/1:127,13:140:99:172,0,7177:73,54,6,7
chr1	154294656	.	T	C	935.05	PASS	AC=2;AF=0.7;AN=2;DP=3271;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3157,305,0:0,0,35,67
chr1	154295592	.	C	T	2294.09	PASS	AC=1;AF=0.543;AN=2;DP=3346;MQ=60;set=variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant25-variant26-variant27-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:106,75:181:99:1762,0,2881:55,51,39,36
chr1	154296076	.	T	C	2770.38	PASS	AC=1;AF=0.548;AN=2;DP=3290;MQ=60;set=variant3-variant6-variant11-variant13-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,79:168:99:2005,0,2219:56,33,50,29
chr1	154296812	.	C	T	3481.7	PASS	AC=1;AF=0.563;AN=2;DP=769;MQ=60;set=variant6-variant15-variant16-variant26-variant27-variant28-variant30-variant39	GT:AD:DP:GQ:PL:SB	0/1:63,83:146:99:2275,0,1659:28,35,40,43
chr1	154302826	.	C	T	3215.23	PASS	AC=1;AF=0.533;AN=2;DP=1291;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:936,0,1098:21,23,18,20
chr1	154303705	.	C	T	366.48	PASS	AC=1;AF=0.543;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant25-variant26-variant27-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:210,0,421:1,10,0,7
chr1	154303976	.	T	C	1139.22	PASS	AC=1;AF=0.543;AN=2;DP=2205;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant25-variant26-variant27-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,72:129:99:1933,0,1634:36,21,43,29
chr1	154305010	.	A	G	341.9	PASS	AC=2;AF=0.909;AN=2;DP=913;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:952,84,0:0,0,18,10
chr1	154305190	.	G	C	993.53	PASS	AC=1;AF=0.543;AN=2;DP=1626;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant25-variant26-variant27-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,35:85:99:810,0,1102:22,28,14,21
chr1	154310223	.	G	GA	3573.92	PASS	AC=1;AF=0.646;AN=2;DP=6617;MQ=60;set=variant5-variant6-variant7-variant9-variant14-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:164,172:336:99:3937,0,3700:76,88,91,81
chr1	154313232	.	T	C	329.22	PASS	AC=1;AF=0.75;AN=2;DP=686;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,19:24:99:499,0,107:2,3,12,7
chr1	154313689	.	G	A	304.4	PASS	AC=1;AF=0.5;AN=2;DP=259;MQ=60;set=variant4-variant7-variant12-variant15-variant17-variant22-variant25-variant26-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,9:31:99:291,0,573:8,14,1,8
chr1	154316434	.	C	T	1185.95	PASS	AC=1;AF=0.5;AN=2;DP=1536;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant17-variant22-variant23-variant25-variant26-variant28-variant32-variant36-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,57:110:99:1474,0,1336:27,26,34,23
chr1	154320942	.	A	G	904.77	PASS	AC=1;AF=0.531;AN=2;DP=1298;MQ=60;set=variant3-variant4-variant7-variant9-variant12-variant15-variant17-variant22-variant23-variant25-variant26-variant28-variant32-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,36:89:99:893,0,1429:24,29,15,21
chr1	154321072	.	A	G	1098.35	PASS	AC=2;AF=0.977;AN=2;DP=2379;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2108,168,0:0,0,23,31
chr1	154321084	.	G	T	882.05	PASS	AC=1;AF=0.526;AN=2;DP=1019;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant12-variant15-variant17-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant36-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:668,0,676:11,15,13,13
chr1	154321281	.	G	A	1451.07	PASS	AC=1;AF=0.5;AN=2;DP=161;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.133;QD=9.01;ReadPosRankSum=2.265;SOR=0.682;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:96,65:161:99:1479,0,2382:49,47,33,32
chr1	154321663	.	C	T	1068.95	PASS	AC=1;AF=0.5;AN=2;DP=864;MQ=60;set=variant4-variant7-variant12-variant15-variant22-variant25-variant26-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,38:97:99:805,0,1443:27,32,18,20
chr1	154321802	.	C	T	322.87	PASS	AC=1;AF=0.5;AN=2;DP=440;MQ=60;set=variant4-variant7-variant12-variant15-variant17-variant22-variant25-variant26-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:328,0,329:4,8,4,8
chr1	154322473	.	A	G	1435.34	PASS	AC=1;AF=0.533;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:859,0,659:9,18,10,20
chr1	154351073	.	T	C	1407.3	PASS	AC=1;AF=0.5;AN=2;DP=1994;set=variant2-variant3-variant4-variant7-variant12-variant15-variant17-variant22-variant25-variant26-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,95:204:99:2276,0,2961:60,49,48,47
chr1	154351199	.	G	A	828.78	PASS	AC=2;AF=0.615;AN=2;DP=2746;set=variant2-variant3-variant4-variant6-variant7-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4460,419,0:0,0,63,77
chr1	154351247	.	C	G	2419.65	PASS	AC=1;AF=0.559;AN=2;DP=1354;set=variant6-variant14-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,45:98:99:1398,0,1371:25,28,17,28
chr1	154351277	.	G	T	2415.74	PASS	AC=1;AF=0.559;AN=2;DP=1405;set=variant6-variant14-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,44:105:99:1286,0,1695:29,32,23,21
chr1	154351304	.	A	G	2650.36	PASS	AC=1;AF=0.559;AN=2;DP=1560;set=variant6-variant14-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,55:115:99:1573,0,1559:27,33,29,26
chr1	154351323	.	T	C	2504.34	PASS	AC=1;AF=0.559;AN=2;DP=1679;set=variant6-variant14-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,57:122:99:1546,0,1821:30,35,32,25
chr1	154377569	.	C	T	675.91	PASS	AC=2;AF=0.989;AN=2;DP=1396;MQ=60;MQRankSum=0.217;ReadPosRankSum=-1.463;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1121,99,0:0,0,24,9
chr1	154377898	.	G	A	1417.7	PASS	AC=1;AF=0.574;AN=2;DP=2101;MQ=60;set=variant3-variant4-variant6-variant7-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,52:94:99:1190,0,891:16,26,19,33
chr1	154401972	.	T	C	813.15	PASS	AC=1;AF=0.662;AN=2;DP=3129;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,50:102:99:1292,0,1380:19,33,18,32
chr1	154407419	.	A	C	587.96	PASS	AC=1;AF=0.629;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:492,0,530:11,4,12,5
chr1	154407713	.	T	C	627.89	PASS	AC=1;AF=0.638;AN=2;DP=1480;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:721,0,608:8,16,10,17
chr1	154408340	.	T	C	241.58	PASS	AC=1;AF=0.676;AN=2;DP=1066;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:627,0,361:10,6,14,6
chr1	154409730	.	G	A	283.83	PASS	AC=1;AF=0.735;AN=2;DP=116;FractionInformativeReads=1;set=variant3-variant6-variant15-variant16-variant21-variant24-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,106:3,0,2,1
chr1	154409893	.	A	AT	378.81	PASS	AC=1;AF=0.621;AN=2;DP=989;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-filterInvariant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,17:44:99:325,0,569:14,13,8,9
chr1	154420402	.	G	C	46.72	PASS	AC=1;AF=0.641;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,120:3,1,1,2
chr1	154422580	.	CTG	CTGTGTGTGTGTGTGTG,CTGTGTG,CTGTGTGTGTG,CTGTGTGTGTGTG,C,CTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTG	114.07	PASS	AC=0,0,0,0,0,1,0,0,0;AF=0.071,0.048,0.167,0.095,0.071,0.048,0.167,0.095,0.024;AN=2;DP=354;set=variant3-variant5-variant6-variant7-variant8-variant15-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant32-variant35-variant36-variant38-variant41-variant43	GT:DP:GQ:SB	0/6:14:99:0,2,4,8
chr1	154426970	.	A	C	1369.24	PASS	AC=1;AF=0.638;AN=2;DP=2474;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,32:93:99:805,0,1462:32,29,21,11
chr1	154437896	.	T	C	3057	PASS	AC=2;AF=0.866;AN=2;DP=4292;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3631,368,0:0,0,55,68
chr1	154438084	.	C	T	1590.82	PASS	AC=2;AF=0.866;AN=2;DP=2201;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2035,211,0:0,0,37,34
chr1	154438880	.	T	C	640.01	PASS	AC=2;AF=0.854;AN=2;DP=1014;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:858,75,0:0,0,11,14
chr1	154439474	.	C	T	519.19	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.51;QD=10.6;ReadPosRankSum=0.55;SOR=0.622;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:547,0,478:12,13,12,12
chr1	154439865	.	T	A	728.71	PASS	AC=2;AF=0.866;AN=2;DP=1646;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1368,141,0:0,0,24,23
chr1	154441856	.	GT	G	3695.96	PASS	AC=2;AF=0.75;AN=2;DP=12931;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,353:353:99:10621,1062,0:0,0,143,210
chr1	154442960	.	G	A	767.61	PASS	AC=2;AF=0.744;AN=2;DP=2908;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,104:105:99:3273,269,0:0,1,36,68
chr1	154452100	.	A	G	5325.8	PASS	AC=2;AF=0.966;AN=2;DP=7087;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5601,518,0:0,0,93,80
chr1	154452218	.	C	T	8843.69	PASS	AC=2;AF=0.955;AN=2;DP=11206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,308:308:99:8717,920,0:0,0,159,149
chr1	154454674	.	C	G	320.92	PASS	AC=2;AF=0.965;AN=2;DP=328;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:402,33,0:0,0,10,1
chr1	154455949	.	T	C	803.93	PASS	AC=2;AF=0.744;AN=2;DP=2519;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,89:91:99:2644,223,0:1,1,47,42
chr1	154457855	.	A	C	932.26	PASS	AC=2;AF=0.864;AN=2;DP=1621;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1004,90,0:0,0,9,21
chr1	154459197	.	C	G	1277.86	PASS	AC=2;AF=0.966;AN=2;DP=3233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2372,243,0:0,0,36,45
chr1	154473660	.	T	C	250.55	PASS	AC=2;AF=0.784;AN=2;DP=467;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:482,42,0:0,0,8,6
chr1	154473726	.	G	A	1298.79	PASS	AC=2;AF=0.955;AN=2;DP=1413;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:920,89,0:0,0,15,15
chr1	154474131	.	C	G	3252.7	PASS	AC=2;AF=0.864;AN=2;DP=6314;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,183:184:99:5469,505,0:1,0,83,100
chr1	154474557	.	T	C	1994.23	PASS	AC=2;AF=0.864;AN=2;DP=2771;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2131,213,0:0,0,28,43
chr1	154474875	.	G	A	1081.84	PASS	AC=2;AF=0.744;AN=2;DP=2722;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1844,188,0:0,0,36,27
chr1	154474900	.	G	A	1092.3	PASS	AC=2;AF=0.744;AN=2;DP=2607;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2070,206,0:0,0,39,30
chr1	154475330	.	T	A	4216.11	PASS	AC=2;AF=0.732;AN=2;DP=7962;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:11523,791,0:0,0,122,140
chr1	154475331	.	C	A	4216.09	PASS	AC=2;AF=0.732;AN=2;DP=7932;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,261:261:99:11523,791,0:0,0,122,139
chr1	154479657	.	C	CAT	2842.87	PASS	AC=2;AF=0.955;AN=2;DP=2202;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2720,189,0:0,0,37,19
chr1	154479670	.	C	T	1062.85	PASS	AC=2;AF=0.744;AN=2;DP=2341;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2195,209,0:0,0,44,26
chr1	154492702	.	G	A	758.62	PASS	AC=2;AF=0.744;AN=2;DP=3311;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2576,242,0:0,0,53,28
chr1	154493721	.	T	C	1370.19	PASS	AC=2;AF=0.955;AN=2;DP=1761;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1849,174,0:0,0,38,20
chr1	154514331	.	C	A	279.03	PASS	AC=2;AF=0.732;AN=2;DP=1085;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1003,101,0:0,0,21,13
chr1	154516477	.	G	A	4488.85	PASS	AC=1;AF=0.609;AN=2;DP=7261;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant15-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,184:374:99:4406,0,4697:97,93,90,94
chr1	154516571	.	T	C	9055.04	PASS	AC=2;AF=0.955;AN=2;DP=10950;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,286:286:99:8918,857,0:0,0,115,171
chr1	154521339	.	G	A	712.5	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.231;QD=14.54;ReadPosRankSum=3.307;SOR=0.705;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:741,0,631:9,13,11,16
chr1	154522248	.	A	G	2032.64	PASS	AC=2;AF=0.837;AN=2;DP=2880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2844,246,0:0,0,27,55
chr1	154523215	.	C	T	1205.87	PASS	AC=2;AF=0.955;AN=2;DP=1871;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2006,165,0:0,0,43,12
chr1	154523588	.	T	G	1141.54	PASS	AC=2;AF=0.943;AN=2;DP=1427;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1609,135,0:0,0,8,37
chr1	154524973	.	A	G	2513.9	PASS	AC=1;AF=0.604;AN=2;DP=4312;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant15-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,117:203:99:2730,0,1738:45,41,59,58
chr1	154528086	.	T	C	3091.54	PASS	AC=2;AF=0.943;AN=2;DP=4090;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3202,312,0:0,0,49,55
chr1	154528518	.	C	A	412.12	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=4.304;FractionInformativeReads=1;MQ=60;MQRankSum=0.613;QD=17.92;ReadPosRankSum=2.227;SOR=1.911;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:440,0,193:4,4,4,11
chr1	154548721	.	T	C	2091.05	PASS	AC=1;AF=0.826;AN=2;DP=3402;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,55:93:99:1464,0,879:20,18,27,28
chr1	154548880	.	G	A	1152.99	PASS	AC=1;AF=0.529;AN=2;DP=1414;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant12-variant15-variant17-variant19-variant25-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1492,0,1456:27,28,34,28
chr1	154549470	.	T	C	904.01	PASS	AC=1;AF=0.55;AN=2;DP=1743;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant12-variant15-variant17-variant19-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,46:103:99:1031,0,1358:30,27,25,21
chr1	154550943	.	CAG	C	599.24	PASS	AC=1;AF=0.528;AN=2;DP=969;MQ=60;set=variant2-variant3-variant4-variant7-variant12-variant15-variant17-variant19-variant25-variant27-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,29:68:99:1098,0,1508:18,21,17,12
chr1	154552516	.	CTG	C	545.22	PASS	AC=1;AF=0.526;AN=2;DP=413;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant12-variant15-variant17-variant19-variant25-variant27-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:240,0,713:6,12,3,4
chr1	154552532	.	T	C	425.54	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=1.893;FractionInformativeReads=1;MQ=60;MQRankSum=1.207;QD=17.73;ReadPosRankSum=0.572;SOR=1.387;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:454,0,121:3,4,5,12
chr1	154554951	.	A	AGGGGCATG	4821.24	PASS	AC=2;AF=0.943;AN=2;DP=6112;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,130:132:99:4216,344,0:1,1,53,77
chr1	154555492	.	T	C	974.68	PASS	AC=1;AF=0.738;AN=2;DP=1512;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:652,0,590:15,7,14,10
chr1	154556040	.	T	G	561.16	PASS	AC=1;AF=0.553;AN=2;DP=944;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant12-variant15-variant17-variant19-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:741,0,910:17,18,10,19
chr1	154556266	.	G	A	1350.4	PASS	AC=1;AF=0.738;AN=2;DP=1754;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:732,0,631:11,14,18,10
chr1	154556761	.	CCT	C	817.3	PASS	AC=1;AF=0.553;AN=2;DP=883;MQ=60;set=variant2-variant3-variant4-variant7-variant12-variant15-variant17-variant19-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:753,0,1174:14,15,9,11
chr1	154559036	.	G	C	289.98	PASS	AC=2;AF=0.955;AN=2;DP=403;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:217,15,0:0,0,1,4
chr1	154561261	.	G	C	2516.78	PASS	AC=2;AF=0.943;AN=2;DP=2998;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2466,246,0:0,0,37,45
chr1	154561925	.	C	T	1131.29	PASS	AC=1;AF=0.553;AN=2;DP=1492;MQ=60;set=variant2-variant3-variant4-variant7-variant12-variant15-variant17-variant19-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:988,0,1331:29,27,24,18
chr1	154562617	.	A	AC,ACC	661.9	PASS	AC=0,1;AF=0.421,0.079;AN=2;DP=1845;MQ=60;set=variant3-variant4-variant7-variant10-variant11-variant15-variant19-variant26-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/2:81:99:18,24,18,21
chr1	154562625	.	G	C	1374.71	PASS	AC=2;AF=0.875;AN=2;DP=4206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,85:88:99:2807,181,0:1,2,37,48
chr1	154571174	.	T	TGGA	592.49	PASS	AC=2;AF=0.989;AN=2;DP=604;FS=0;MQ=60;MQRankSum=0.751;ReadPosRankSum=0.751;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1026,69,0:0,0,5,18
chr1	154573419	.	C	T	362.53	PASS	AC=1;AF=0.563;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant19-variant22-variant25-variant26-variant27-variant28-variant32-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:203,0,495:13,3,7,2
chr1	154573967	.	T	C	5124.46	PASS	AC=1;AF=0.726;AN=2;DP=6741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,85:179:99:2066,0,2472:42,52,40,45
chr1	154574820	.	T	C	2977.94	PASS	AC=2;AF=1;AN=2;DP=5799;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5077,504,0:0,0,77,91
chr1	154575040	.	C	T	3231.03	PASS	AC=2;AF=1;AN=2;DP=5191;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3544,345,0:0,0,57,58
chr1	154580348	.	GAC	GACAC,G	5444.27	PASS	AC=1,0;AF=0.477,0.045;AN=2;DP=3847;set=variant2-variant3-variant4-variant7-filterInvariant9-filterInvariant10-variant12-variant15-variant17-variant19-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:165:99:60,46,33,26
chr1	154580458	.	C	A	1994.47	PASS	AC=1;AF=0.553;AN=2;DP=5011;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant24-variant33-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,137:246:99:3450,0,2813:51,58,59,78
chr1	154600372	.	A	G	3432.51	PASS	AC=2;AF=1;AN=2;DP=5735;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,147:148:99:4328,407,0:1,0,78,69
chr1	154600533	.	A	G	2198.46	PASS	AC=1;AF=0.559;AN=2;DP=2736;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant32-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,93:197:99:2213,0,2507:45,59,36,57
chr1	154679901	.	CT	CTT,C	109.63	PASS	AC=1,0;AF=0.611,0.037;AN=2;DP=318;set=variant2-variant3-variant4-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:10:65:2,2,2,4
chr1	154709682	.	TG	T,TGG	226.16	PASS	AC=1,0;AF=0.742,0.048;AN=2;DP=655;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant42	GT:DP:GQ:SB	0/1:16:99:5,4,4,3
chr1	154744852	.	A	G	2723.32	PASS	AC=1;AF=0.756;AN=2;DP=4531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,67:146:99:1818,0,2064:30,49,21,46
chr1	154832304	.	T	C	6867.94	PASS	AC=1;AF=0.744;AN=2;DP=6174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,109:229:99:2674,0,2856:51,69,45,64
chr1	154832322	.	A	C	5906.09	PASS	AC=2;AF=0.942;AN=2;DP=6036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,209:210:99:7800,599,0:1,0,87,122
chr1	154840516	.	C	A	1018.26	PASS	AC=1;AF=0.692;AN=2;DP=2571;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,52:105:99:1117,0,1357:31,22,25,27
chr1	154841415	.	TCTCTCTCTCTCACA	T	167.92	PASS	AC=1;AF=0.7;AN=2;DP=489;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:312,0,297:6,2,5,3
chr1	154842199	.	GGCTGCTGCT	GGCTGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCT,GGCTGCT,G,GGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT	2072.81	PASS	AC=0,0,0,1,1,0,0,0,0;AF=0.182,0.091,0.045,0.386,0.102,0.011,0.034,0.091,0.011;AN=2;DP=4436;set=Intersection	GT:DP:GQ:SB	5/4:87:99:1,1,41,44
chr1	154897561	.	A	C	347.17	PASS	AC=1;AF=0.5;AN=2;DP=1602;set=filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:38,17:55:99:466,0,834:5,33,17,0
chr1	154897567	.	A	C	526.14	PASS	AC=1;AF=0.5;AN=2;DP=1855;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant34-filterInvariant36-variant37-variant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:41,16:57:99:310,0,2704:8,33,16,0
chr1	154897570	.	T	C	520.12	PASS	AC=1;AF=0.5;AN=2;DP=1810;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant21-filterInvariant22-variant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-variant29-filterInvariant30-filterInvariant34-filterInvariant36-variant37-filterInvariant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:47,14:61:99:302,0,2750:13,34,14,0
chr1	154897572	.	A	C	260.17	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant15-variant36	GT:AD:DP:GQ:PL:SB	0/1:48,9:57:99:288,0,2755:12,36,9,0
chr1	154904840	.	T	C	1260.47	PASS	AC=1;AF=0.5;AN=2;DP=787;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant20-variant21-variant26-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:46,75:121:99:1844,0,1110:31,15,45,30
chr1	154909169	.	C	T	3082.46	PASS	AC=1;AF=0.5;AN=2;DP=1680;MQ=60;set=variant8-variant15-variant20-variant21-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:136,149:285:99:3603,0,3326:60,76,68,81
chr1	154909268	.	A	G	1499.6	PASS	AC=2;AF=0.677;AN=2;DP=5266;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5613,537,0:0,0,76,103
chr1	154916992	.	T	TA	87.09	PASS	AC=1;AF=0.63;AN=2;DP=821;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:162,0,499:16,6,4,6
chr1	154917314	.	G	A	830.93	PASS	AC=2;AF=0.667;AN=2;DP=2350;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2431,243,0:0,0,46,35
chr1	154917701	.	A	G	870.51	PASS	AC=2;AF=0.92;AN=2;DP=2693;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2226,222,0:0,0,31,43
chr1	154918654	.	C	T	1324.14	PASS	AC=1;AF=0.5;AN=2;DP=181;FS=0.579;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.266;QD=7.32;ReadPosRankSum=-2.696;SOR=0.63;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:120,60:180:99:1352,0,3053:62,58,30,30
chr1	154919080	.	C	T	693.91	PASS	AC=2;AF=0.667;AN=2;DP=3923;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5353,522,0:0,0,76,99
chr1	154938954	.	C	T	988.44	PASS	AC=1;AF=0.5;AN=2;DP=538;MQ=60;set=variant5-variant8-variant15-variant20-variant21-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:37,47:84:99:1185,0,1027:12,25,20,27
chr1	154941593	.	C	G	130.13	PASS	AC=1;AF=0.648;AN=2;DP=473;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:472,0,235:7,1,12,4
chr1	154983539	.	C	T	708.19	PASS	AC=1;AF=0.704;AN=2;DP=746;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:394,0,257:1,7,2,11
chr1	154987526	.	C	T	2344.39	PASS	AC=1;AF=0.69;AN=2;DP=6755;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:144,144:288:99:3513,0,3617:70,74,80,64
chr1	154988957	.	A	G	2153.8	PASS	AC=1;AF=0.788;AN=2;DP=5719;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:116,125:241:99:3314,0,2500:52,64,53,72
chr1	154989595	.	T	C	1252.79	PASS	AC=1;AF=0.779;AN=2;DP=2975;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,36:104:99:964,0,1874:37,31,20,16
chr1	154989823	.	T	TGGGGGCAGTAGAGGGGGCAGTAGA,TGGGGGCAGTAGA,TGGGGGCAGTAGAGGGGGCAGTAGAGGGGGCAGTAGAGGGGCCCCGGCAGTAGA	958.78	PASS	AC=0,1,0;AF=0.438,0.063,0.063;AN=2;DP=987;set=variant5-variant8-variant14-variant15-variant16-variant20-variant21-variant26-variant28-variant30-variant31-variant32-variant36-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:62:99:17,15,13,17
chr1	154990297	.	C	G	665.65	PASS	AC=1;AF=0.667;AN=2;DP=2171;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant33-variant34-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,50:92:99:1469,0,1271:21,21,23,27
chr1	154995503	.	G	A	524.44	PASS	AC=1;AF=0.69;AN=2;DP=1264;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:440,0,587:12,11,11,9
chr1	155001929	.	T	C	838.82	PASS	AC=1;AF=0.646;AN=2;DP=1471;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,30:69:99:748,0,940:14,25,10,20
chr1	155003889	.	G	GCCC	35.29	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=29;FS=41.746;FractionInformativeReads=0.897;MQ=60;MQRankSum=-0.817;QD=1.22;ReadPosRankSum=-2.381;SOR=3.219;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:22,4:26:73:73,0,944:0,22,4,0
chr1	155003893	.	A	C	44.47	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=27;FS=35.453;FractionInformativeReads=1;MQ=60;MQRankSum=-1.194;QD=1.65;ReadPosRankSum=-2.355;SOR=3.219;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:23,4:27:73:73,0,944:1,22,4,0
chr1	155003899	.	A	C	31.51	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=25;FS=27.597;FractionInformativeReads=1;MQ=60;MQRankSum=1.714;QD=1.26;ReadPosRankSum=-2.383;SOR=2.773;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:22,3:25:60:60,0,915:1,21,3,0
chr1	155003992	.	C	T	61.03	PASS	AC=1;AF=0.5;AN=2;DP=209;MQ=60;set=variant15-variant17-variant22-variant23-variant25-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,5:26:89:89,0,942:4,17,5,0
chr1	155003995	.	A	C	46.08	PASS	AC=1;AF=0.5;AN=2;DP=814;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant17-variant19-variant21-variant22-variant25-variant26-variant27-variant28-filterInvariant29-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,4:28:77:77,0,1110:8,16,4,0
chr1	155006091	.	A	G	1040.09	PASS	AC=1;AF=0.64;AN=2;DP=4927;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:149,93:242:99:2117,0,3463:77,72,44,49
chr1	155006999	.	C	T	2255.89	PASS	AC=1;AF=0.64;AN=2;DP=4517;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:122,123:245:99:2903,0,3001:59,63,66,57
chr1	155007293	.	C	T	235.59	PASS	AC=1;AF=0.64;AN=2;DP=401;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:443,0,693:1,9,4,8
chr1	155007302	.	C	A	235.59	PASS	AC=1;AF=0.64;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:412,0,696:1,8,3,7
chr1	155012778	.	CAAA	CAA,CA,C	48.14	PASS	AC=1,0,0;AF=0.406,0.063,0.031;AN=2;DP=249;set=variant3-variant10-variant11-variant15-variant16-variant17-variant20-variant21-variant25-variant29-variant30-variant31-filterInvariant33-variant38-variant39-variant40	GT:DP:GQ:SB	0/1:17:99:5,4,7,1
chr1	155019710	.	A	C	1270.49	PASS	AC=1;AF=0.64;AN=2;DP=2820;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,53:126:99:1312,0,1789:43,30,32,21
chr1	155021893	.	AT	A,ATT,ATTT	216.1	PASS	AC=0,1,0;AF=0.188,0.328,0.016;AN=2;DP=1095;set=variant-variant2-filterInvariant3-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:DP:GQ:SB	0/2:26:92:1,17,2,6
chr1	155023634	.	G	A	165.89	PASS	AC=1;AF=0.533;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant10-variant15-variant17-variant20-variant22-variant25-variant26-variant28-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:110,0,316:3,8,1,4
chr1	155025361	.	T	C	111.86	PASS	AC=1;AF=0.542;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant10-variant15-variant19-variant22-variant25-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:182,0,229:1,6,1,5
chr1	155026942	.	A	C	1449.58	PASS	AC=2;AF=0.86;AN=2;DP=3265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2520,243,0:0,0,33,48
chr1	155029253	.	A	C	121.4	PASS	AC=1;AF=0.5;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant13-variant15-variant24-variant26-variant27-variant32-variant33-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:132,0,280:7,1,3,1
chr1	155031376	.	C	T	827.64	PASS	AC=1;AF=0.529;AN=2;DP=1689;MQ=60;set=variant-variant2-variant7-variant8-variant10-variant11-variant15-variant17-variant19-variant20-variant22-variant25-variant26-variant28-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,48:117:99:1198,0,1706:37,32,24,24
chr1	155033317	.	T	C	2836.76	PASS	AC=1;AF=0.718;AN=2;DP=3644;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,43:123:99:865,0,2077:32,48,16,27
chr1	155033334	.	G	A	587	PASS	AC=1;AF=0.5;AN=2;DP=1286;MQ=60;set=variant2-variant4-variant5-variant6-variant12-variant15-variant17-variant24-variant26-variant27-variant32-variant33-variant34-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,71:112:99:1842,0,832:15,26,26,45
chr1	155057499	.	A	G,C	741.62	PASS	AC=1,0;AF=0.611,0.042;AN=2;DP=2474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:107:99:41,18,36,12
chr1	155058663	.	G	A	1220.48	PASS	AC=1;AF=0.5;AN=2;DP=2386;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant12-variant15-variant17-variant24-variant26-variant27-variant32-variant33-variant34-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,71:158:99:1752,0,2247:37,50,34,37
chr1	155059851	.	A	G	624.07	PASS	AC=1;AF=0.633;AN=2;DP=2299;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,35:95:99:869,0,1428:26,34,16,19
chr1	155100265	.	A	G	543.4	PASS	AC=1;AF=0.607;AN=2;DP=776;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-filterInvariant33-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:427,0,521:11,8,9,8
chr1	155105882	.	T	G	1089.19	PASS	AC=1;AF=0.643;AN=2;DP=595;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant15-variant19-variant22-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1230,0,1212:30,15,29,18
chr1	155106054	.	A	G	3686.31	PASS	AC=1;AF=0.703;AN=2;DP=5306;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,81:184:99:2122,0,2797:54,49,39,42
chr1	155106227	.	A	T	5014.01	PASS	AC=1;AF=0.703;AN=2;DP=6709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,84:177:99:2099,0,2360:38,55,41,43
chr1	155106550	.	A	G	748.79	PASS	AC=1;AF=0.58;AN=2;DP=2937;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1492,0,1626:33,27,29,31
chr1	155106697	.	G	A	1219.94	PASS	AC=1;AF=0.58;AN=2;DP=2680;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,55:117:99:1325,0,1690:27,35,26,29
chr1	155108287	.	G	A	1312.9	PASS	AC=1;AF=0.58;AN=2;DP=2383;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,65:121:99:1824,0,1474:32,24,36,29
chr1	155108663	.	A	AG	437.18	PASS	AC=2;AF=1;AN=2;DP=926;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:81:849,81,0:0,0,23,2
chr1	155113104	.	G	T	619.66	PASS	AC=1;AF=0.565;AN=2;DP=1403;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,25:67:99:659,0,1231:10,32,4,21
chr1	155142210	.	A	G	1287.36	PASS	AC=1;AF=0.625;AN=2;DP=3067;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,56:118:99:1415,0,1792:32,30,27,29
chr1	155142229	.	G	A	1217.37	PASS	AC=1;AF=0.625;AN=2;DP=3076;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,55:120:99:1448,0,1840:34,31,26,29
chr1	155148781	.	G	A	277.04	PASS	AC=1;AF=0.571;AN=2;DP=728;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant30-variant32-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:744,0,694:8,18,7,20
chr1	155149718	.	G	A	2247.16	PASS	AC=1;AF=0.591;AN=2;DP=3800;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant30-variant32-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,109:201:99:2834,0,2125:35,57,54,55
chr1	155161794	.	C	T	622.67	PASS	AC=1;AF=0.5;AN=2;DP=646;set=variant-variant5-variant6-variant15-variant17-variant24-variant26-variant27-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:637,0,1109:20,21,18,15
chr1	155162067	.	C	T	3459.22	PASS	AC=1;AF=0.661;AN=2;DP=3959;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,83:157:99:1937,0,1945:35,39,38,45
chr1	155172379	.	G	A	703.81	PASS	AC=1;AF=0.661;AN=2;DP=699;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:587,0,343:6,6,14,7
chr1	155174376	.	CA	C,CAA	82.9	PASS	AC=0,2;AF=0.262,0.262;AN=2;DP=614;MQ=60;set=variant-variant2-filterInvariant3-variant7-variant10-filterInvariant11-variant12-variant15-variant16-filterInvariant18-variant20-variant21-variant22-variant26-variant29-variant30-variant34-filterInvariant35-variant36-variant42-filterInvariant43	GT:DP:GQ:SB	2/2:18:19:1,1,10,6
chr1	155178782	.	A	T	1325.64	PASS	AC=2;AF=0.722;AN=2;DP=4062;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4019,399,0:0,0,50,84
chr1	155181843	.	G	T	877.97	PASS	AC=1;AF=0.661;AN=2;DP=1140;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:333,0,702:17,8,10,4
chr1	155182164	.	C	T	6099.75	PASS	AC=1;AF=0.661;AN=2;DP=7509;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:173,142:315:99:3471,0,4257:85,88,73,69
chr1	155184975	.	A	G	1998.93	PASS	AC=2;AF=0.736;AN=2;DP=8584;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,271:271:99:8447,812,0:0,0,123,148
chr1	155186729	.	T	C	3823.01	PASS	AC=1;AF=0.661;AN=2;DP=4642;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,82:165:99:2001,0,2034:31,52,33,49
chr1	155186742	.	G	A	3452.05	PASS	AC=1;AF=0.571;AN=2;DP=3662;set=variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,68:149:99:1574,0,2049:31,50,28,40
chr1	155194980	.	T	C	373.66	PASS	AC=1;AF=0.712;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant28-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:64:64,0,159:2,4,1,2
chr1	155195044	.	A	G	144.53	PASS	AC=2;AF=1;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant36-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	155205669	.	G	T	4277.23	PASS	AC=2;AF=0.989;AN=2;DP=9858;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,241:244:99:7170,696,0:1,2,98,143
chr1	155257431	.	T	G	268.07	PASS	AC=1;AF=0.5;AN=2;DP=92;MQ=60;set=variant-variant5-variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:357,0,339:6,5,7,4
chr1	155294274	.	A	G	3433.09	PASS	AC=2;AF=1;AN=2;DP=4774;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4081,380,0:0,0,64,63
chr1	155294772	.	A	G	2337.36	PASS	AC=2;AF=0.989;AN=2;DP=3207;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:4213,354,0:0,0,44,74
chr1	155306151	.	T	TACAC	97.61	PASS	AC=2;AF=1;AN=2;DP=213;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,7,1
chr1	155313047	.	T	C	976.84	PASS	AC=2;AF=0.989;AN=2;DP=2047;FS=0;MQ=60;MQRankSum=0.565;ReadPosRankSum=-0.188;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1429,117,0:0,0,29,10
chr1	155408635	.	T	C	3821.14	PASS	AC=2;AF=1;AN=2;DP=5505;FS=0;MQ=60;MQRankSum=1.344;ReadPosRankSum=0.439;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5011,483,0:0,0,81,80
chr1	155532316	.	T	C	5127.87	PASS	AC=2;AF=1;AN=2;DP=6620;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:9183,620,0:0,0,95,108
chr1	155532325	.	T	C	5261.5	PASS	AC=2;AF=1;AN=2;DP=6654;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:9655,647,0:0,0,100,112
chr1	155532332	.	T	C	5168.26	PASS	AC=2;AF=1;AN=2;DP=6732;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,210:210:99:9655,647,0:0,0,104,106
chr1	155532341	.	T	C	4954.61	PASS	AC=2;AF=1;AN=2;DP=6774;FS=0;MQRankSum=1.407;ReadPosRankSum=1.617;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:9144,614,0:0,0,101,99
chr1	155533153	.	G	A	2254.37	PASS	AC=1;AF=0.5;AN=2;DP=963;FractionInformativeReads=1;set=variant-variant5-variant15-variant21-variant27	GT:AD:DP:GQ:PL:SB	0/1:102,99:201:99:2505,0,2743:44,58,45,54
chr1	155618415	.	CT	C	6911.09	PASS	AC=2;AF=0.989;AN=2;DP=7735;MQRankSum=-5.776;ReadPosRankSum=1.755;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:6359,554,0:0,0,91,93
chr1	155686739	.	CA	C	34.38	PASS	AC=1;AF=0.5;AN=2;DP=818;set=variant-variant2-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-filterInvariant12-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant32-variant33-variant35-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:100,0,305:11,6,7,1
chr1	155702024	.	C	CT,CTT	185.96	PASS	AC=1,0;AF=0.558,0.019;AN=2;DP=1021;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant26-variant27-variant28-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:DP:GQ:SB	0/1:33:99:6,11,6,10
chr1	155737385	.	C	T	1130.13	PASS	AC=2;AF=0.989;AN=2;DP=1424;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:941,84,0:0,0,18,10
chr1	155737425	.	AACACAC	AAC,AACACACAC,AACAC,A	1391.16	PASS	AC=2,0,0,0;AF=0.628,0.081,0.023,0.023;AN=2;DP=1380;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:28:84:0,0,9,19
chr1	155746340	.	CT	C	932.22	PASS	AC=2;AF=0.966;AN=2;DP=2939;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,68:71:99:1747,147,0:0,3,21,47
chr1	155754117	.	G	A	1149.91	PASS	AC=2;AF=0.966;AN=2;DP=1479;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1207,111,0:0,0,11,26
chr1	155755097	.	G	A	3927.49	PASS	AC=2;AF=0.989;AN=2;DP=5028;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3524,349,0:0,0,52,65
chr1	155783763	.	C	T	627.34	PASS	AC=2;AF=0.943;AN=2;DP=1277;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1007,93,0:0,0,8,23
chr1	155785578	.	CAACT	C	5632.05	PASS	AC=2;AF=0.966;AN=2;DP=5675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:8889,602,0:0,0,120,80
chr1	155822971	.	C	T	1019.56	PASS	AC=2;AF=0.744;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1216,96,0:0,0,27,5
chr1	155823002	.	T	C	1807.63	PASS	AC=2;AF=1;AN=2;DP=1860;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2251,195,0:0,0,48,17
chr1	155829140	.	C	G	2625.84	PASS	AC=2;AF=0.989;AN=2;DP=4456;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3362,335,0:0,0,65,47
chr1	155829360	.	C	A	3678.89	PASS	AC=2;AF=0.989;AN=2;DP=7861;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:6970,729,0:0,0,131,113
chr1	155837865	.	G	C	4099.2	PASS	AC=2;AF=0.989;AN=2;DP=7587;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6353,645,0:0,0,119,96
chr1	155838267	.	T	C	3496.57	PASS	AC=2;AF=1;AN=2;DP=7452;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,196:197:99:6138,580,0:0,1,113,83
chr1	155850558	.	T	C	872.02	PASS	AC=2;AF=0.756;AN=2;DP=1768;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1432,120,0:0,0,8,32
chr1	155850811	.	G	A	509.68	PASS	AC=2;AF=0.763;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:532,42,0:0,0,11,3
chr1	155852123	.	C	T	3501.29	PASS	AC=2;AF=0.744;AN=2;DP=3040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3365,276,0:0,0,44,48
chr1	155868336	.	C	G,A	724.91	PASS	AC=2,0;AF=0.702,0.226;AN=2;DP=694;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:24:72:0,0,21,3
chr1	155868984	.	T	C	3565.33	PASS	AC=2;AF=0.942;AN=2;DP=3596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3526,291,0:0,0,26,71
chr1	155869435	.	T	TA	5014.3	PASS	AC=2;AF=0.737;AN=2;DP=10002;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:20,239:259:99:5701,226,0:8,12,109,130
chr1	155870416	.	G	A	4068.07	PASS	AC=2;AF=0.942;AN=2;DP=4714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3855,348,0:0,0,52,64
chr1	155880573	.	C	G	3825.71	PASS	AC=2;AF=0.942;AN=2;DP=7056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6584,641,0:0,0,109,105
chr1	155880760	.	C	CA	1478.69	PASS	AC=2;AF=0.93;AN=2;DP=2357;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:3010,226,0:0,0,24,51
chr1	155880952	.	G	A	260.77	PASS	AC=2;AF=0.794;AN=2;DP=320;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:377,33,0:0,0,6,5
chr1	155884832	.	TTC	T	240.39	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=1678;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:181,21:202:99:192,0,6160:54,127,7,14
chr1	155891045	.	A	C	1409.45	PASS	AC=2;AF=0.757;AN=2;DP=1337;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1237,102,0:0,0,28,6
chr1	155891857	.	AT	ATT,A,ATTT	87.16	PASS	AC=1,0,0;AF=0.455,0.091,0.023;AN=2;DP=902;set=variant2-filterInvariant5-filterInvariant6-variant7-variant8-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-variant20-variant22-variant26-variant28-filterInvariant33-variant34-filterInvariant37-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:34:99:0,16,6,12
chr1	155891877	.	C	CAG	490.13	PASS	AC=2;AF=1;AN=2;DP=955;FS=0;MQRankSum=-1.404;ReadPosRankSum=1.404;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:89:1261,89,0:0,0,4,24
chr1	155899020	.	A	T	1701.22	PASS	AC=2;AF=0.75;AN=2;DP=2173;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2344,227,0:0,0,47,29
chr1	155903310	.	T	C	911.08	PASS	AC=2;AF=1;AN=2;DP=1268;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1247,105,0:0,0,27,8
chr1	155903408	.	C	T	2742.04	PASS	AC=2;AF=0.75;AN=2;DP=3241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2269,230,0:0,0,33,44
chr1	155904177	.	T	C	7773.81	PASS	AC=2;AF=0.942;AN=2;DP=17083;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,495:495:99:14597,1483,0:0,0,272,223
chr1	155904392	.	G	A	144.21	PASS	AC=2;AF=0.942;AN=2;DP=1254;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1580,117,0:0,0,3,36
chr1	155912486	.	T	C	10817.5	PASS	AC=2;AF=1;AN=2;DP=13870;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,336:336:99:10274,1003,0:0,0,141,195
chr1	155917880	.	T	A	1890.63	PASS	AC=2;AF=0.93;AN=2;DP=6583;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5269,552,0:0,0,80,105
chr1	155928232	.	T	C	1685.8	PASS	AC=2;AF=0.93;AN=2;DP=1594;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2205,147,0:0,0,12,37
chr1	155928242	.	C	T	1522.77	PASS	AC=2;AF=0.942;AN=2;DP=1393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:2070,138,0:0,0,12,33
chr1	155931368	.	G	A	558.76	PASS	AC=2;AF=0.763;AN=2;DP=1481;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1792,184,0:0,0,39,23
chr1	155934683	.	CAA	CA,C,CAAA	41.96	PASS	AC=1,0,0;AF=0.5,0.021,0.021;AN=2;DP=723;set=filterInvariant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant17-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant24-variant26-filterInvariant29-variant30-filterInvariant31-variant34-variant36-variant37-variant43-variant44	GT:DP:GQ:SB	0/1:33:99:12,10,11,0
chr1	155947875	.	A	G	2954.55	PASS	AC=2;AF=0.808;AN=2;DP=5437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:4952,512,0:0,0,76,96
chr1	155955076	.	A	G	1479.3	PASS	AC=2;AF=1;AN=2;DP=3029;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2560,267,0:0,0,50,39
chr1	155981489	.	C	G	1348.09	PASS	AC=2;AF=0.718;AN=2;DP=2897;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3029,309,0:0,0,55,48
chr1	156011444	.	T	C	4095.02	PASS	AC=2;AF=0.718;AN=2;DP=6475;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,204:205:99:5931,601,0:1,0,103,101
chr1	156024373	.	A	G	112.41	PASS	AC=1;AF=0.688;AN=2;DP=390;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:397,0,220:6,0,10,2
chr1	156040310	.	A	G	1113.09	PASS	AC=1;AF=0.875;AN=2;DP=1227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:457,0,502:7,10,6,11
chr1	156044938	.	C	G	601.45	PASS	AC=1;AF=0.583;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant12-variant15-variant18-variant19-variant21-variant27-variant28-variant32-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:726,0,710:13,13,17,14
chr1	156045183	.	T	A	348.85	PASS	AC=1;AF=0.559;AN=2;DP=791;MQ=60;set=variant-variant2-variant5-variant6-variant12-variant15-variant18-variant19-variant21-variant27-variant28-variant32-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:726,0,768:13,15,18,12
chr1	156045662	.	A	G	346.87	PASS	AC=2;AF=0.672;AN=2;DP=1956;MQ=60;set=variant-variant2-variant5-variant6-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3182,309,0:0,0,57,46
chr1	156045973	.	C	T	236.99	PASS	AC=1;AF=0.559;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant12-variant15-variant18-variant19-variant21-variant27-variant28-variant32-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:540,0,620:11,13,9,13
chr1	156052286	.	A	G	1191.31	PASS	AC=2;AF=1;AN=2;DP=1648;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1649,135,0:0,0,35,10
chr1	156060150	.	G	C	401.97	PASS	AC=1;AF=0.714;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant20-variant25-variant30-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:104,0,105:2,1,3,0
chr1	156109951	.	TACACACACACACACAC	TACACACACACACACACACACACACACACACACAC,TACACACACACACAC,TACACACACACACACACACACACACACACACAC,TACACAC,TACACACACACACACACAC,TACACACACACACACACACACACACACACAC,TACACACACACAC,TACACACACACACACACACAC,TACACACACAC,TACACACAC,TACACACACACACACACACACACACAC,TACACACACACACACACACACACACACAC,T,TACACACACACACACACACACAC	165.3	PASS	AC=0,0,0,0,0,2,0,0,0,0,0,0,0,0;AF=0.196,0.054,0.071,0.036,0.036,0.071,0.143,0.036,0.054,0.054,0.018,0.018,0.018,0.018;AN=2;DP=478;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant42-variant43-variant44	GT:DP:GQ:SB	6/6:8:26:0,0,3,5
chr1	156119919	.	A	G	108.95	PASS	AC=1;AF=0.5;AN=2;DP=117;MQ=60;set=variant15-variant26-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:137,0,406:20,5,0,13
chr1	156131095	.	C	CGGGGCGG	398.53	PASS	AC=2;AF=1;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;ReadPosRankSum=0.742;set=variant2-variant4-variant5-variant10-variant13-variant15-variant17-variant22-variant23-variant27-variant28-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:12:180,12,0:0,0,3,0
chr1	156132909	.	GCA	G	1839.67	PASS	AC=1;AF=0.571;AN=2;DP=2829;MQ=60;set=variant-variant2-variant5-variant6-variant10-variant13-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,75:150:99:2881,0,2883:33,42,34,41
chr1	156146218	.	C	T	2292.56	PASS	AC=1;AF=0.684;AN=2;DP=3427;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,63:117:99:1532,0,1471:33,21,35,28
chr1	156147326	.	T	C	1352.98	PASS	AC=1;AF=0.621;AN=2;DP=1749;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,36:70:99:1032,0,912:17,17,11,25
chr1	156147558	.	C	T	324.76	PASS	AC=1;AF=0.617;AN=2;DP=338;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:177,0,110:0,4,2,5
chr1	156163906	.	C	T	1412.9	PASS	AC=1;AF=0.54;AN=2;DP=2711;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,71:139:99:1679,0,1624:42,26,38,33
chr1	156169610	.	A	G	898.96	PASS	AC=1;AF=0.548;AN=2;DP=3771;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,58:121:99:1616,0,1759:44,19,42,16
chr1	156180847	.	TTGTGTGTGTGTGTGTGTGTG	TTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTG,T,TTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	76.8	PASS	AC=0,1,0,0,0,0,0,0;AF=0.382,0.105,0.039,0.079,0.026,0.013,0.026,0.013;AN=2;DP=1070;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:17:99:4,3,4,6
chr1	156181007	.	C	G	411.34	PASS	AC=1;AF=0.548;AN=2;DP=1351;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:707,0,499:9,10,12,14
chr1	156181615	.	AC	A	648.61	PASS	AC=1;AF=0.54;AN=2;DP=1305;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:981,0,1075:13,19,17,13
chr1	156181770	.	A	G	675.07	PASS	AC=1;AF=0.548;AN=2;DP=2250;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,58:99:99:1432,0,875:22,19,33,25
chr1	156181833	.	T	G	1091.5	PASS	AC=1;AF=0.5;AN=2;DP=347;MQ=60;set=variant10-variant15-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:61,49:110:99:1142,0,1648:27,34,25,24
chr1	156182710	.	T	C	109.13	PASS	AC=1;AF=0.548;AN=2;DP=775;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:442,0,806:18,6,12,3
chr1	156195205	.	C	T	838.93	PASS	AC=1;AF=0.537;AN=2;DP=803;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:557,0,457:13,2,16,6
chr1	156202173	.	A	G	2089.64	PASS	AC=2;AF=0.578;AN=2;DP=5799;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:6828,662,0:0,0,112,109
chr1	156206121	.	G	A	2788.98	PASS	AC=2;AF=0.56;AN=2;DP=7582;MQ=60;set=variant-variant6-variant7-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,353:353:99:10916,1056,0:0,0,181,172
chr1	156211825	.	T	C	952.16	PASS	AC=1;AF=0.563;AN=2;DP=1321;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant9-variant12-variant15-variant21-variant23-variant25-variant27-variant29-variant31-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,38:68:99:931,0,774:18,12,23,15
chr1	156213257	.	G	A	582.57	PASS	AC=1;AF=0.756;AN=2;DP=1933;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:857,0,630:12,9,15,11
chr1	156247043	.	C	T	498.04	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=0.984;MQ=60;MQRankSum=-0.16;QD=7.91;ReadPosRankSum=0.86;SOR=0.595;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:39,23:62:99:526,0,1068:16,23,10,13
chr1	156247907	.	C	T	395.6	PASS	AC=1;AF=0.568;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:357,0,533:4,15,1,9
chr1	156255423	.	T	C	3694.73	PASS	AC=1;AF=0.5;AN=2;DP=366;FS=2.787;FractionInformativeReads=0.997;MQ=60;MQRankSum=1.982;QD=10.09;ReadPosRankSum=-0.88;SOR=0.735;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:208,157:365:99:3723,0,5237:107,101,75,82
chr1	156255833	.	G	C	422.99	PASS	AC=2;AF=1;AN=2;DP=1092;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1052,96,0:0,0,9,23
chr1	156262167	.	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	AGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGT,AGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGT	302.36	PASS	AC=1,0,0,0,0,0,1,0,0,0;AF=0.268,0.22,0.159,0.085,0.012,0.024,0.024,0.024,0.024,0.024;AN=2;DP=1301;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/7:13:99:0,0,4,9
chr1	156279210	.	T	C	2222.81	PASS	AC=2;AF=1;AN=2;DP=3229;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2951,243,0:0,0,15,66
chr1	156280296	.	GATAA	G	193.45	PASS	AC=1;AF=0.575;AN=2;DP=249;MQ=60;set=variant-variant6-variant11-variant13-variant14-variant15-variant18-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:360,0,99:4,0,7,3
chr1	156282224	.	A	G	66.22	PASS	AC=1;AF=0.865;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,122:0,3,1,1
chr1	156287360	.	C	T	775.81	PASS	AC=1;AF=0.565;AN=2;DP=1411;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:796,0,1176:15,29,15,20
chr1	156303527	.	C	T,A	568.37	PASS	AC=1,0;AF=0.548,0.024;AN=2;DP=594;MQ=60;set=variant-variant6-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant42-variant44	GT:DP:GQ:SB	0/1:29:99:5,7,3,14
chr1	156307768	.	G	A	477.89	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:506,0,858:15,11,15,5
chr1	156341063	.	G	C	61.77	PASS	AC=2;AF=0.919;AN=2;DP=121;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:259,21,0:0,0,2,5
chr1	156347131	.	G	A	7369.35	PASS	AC=1;AF=0.652;AN=2;DP=7431;MQ=60;set=variant-variant2-variant4-variant7-variant12-variant14-variant15-variant16-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:236,170:406:99:3590,0,5955:120,116,95,75
chr1	156348344	.	C	T	582.1	PASS	AC=1;AF=0.652;AN=2;DP=621;MQ=60;set=variant-variant2-variant4-variant7-variant12-variant14-variant15-variant16-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:319,0,574:10,12,3,7
chr1	156351066	.	C	A	5962.56	PASS	AC=1;AF=0.652;AN=2;DP=4320;MQ=60;set=variant-variant2-variant4-variant7-variant12-variant14-variant15-variant16-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,137:240:99:3118,0,2445:60,43,75,62
chr1	156351699	.	G	A	3446.93	PASS	AC=1;AF=0.727;AN=2;DP=3241;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,61:131:99:1282,0,1645:40,30,31,30
chr1	156351792	.	G	A	3053.68	PASS	AC=1;AF=0.742;AN=2;DP=2825;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,52:115:99:1133,0,1634:31,32,21,31
chr1	156353970	.	A	G	410.83	PASS	AC=1;AF=0.528;AN=2;DP=550;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant23-variant24-variant29-variant31-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:90:347,0,90:3,1,7,3
chr1	156354293	.	A	G	581.2	PASS	AC=1;AF=0.548;AN=2;DP=2304;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant23-variant24-variant29-variant31-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,81:148:99:2113,0,1583:28,39,31,50
chr1	156354347	.	TC	T	402.52	PASS	AC=1;AF=0.548;AN=2;DP=1599;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant23-variant24-variant29-variant31-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,57:100:99:1419,0,1001:16,27,19,38
chr1	156354367	.	A	G	538.46	PASS	AC=1;AF=0.757;AN=2;DP=2477;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1335,0,1179:17,26,16,33
chr1	156374256	.	C	T	597.74	PASS	AC=1;AF=0.522;AN=2;DP=1531;MQ=60;set=variant-variant4-variant6-variant7-variant11-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:883,0,886:20,10,18,12
chr1	156376680	.	A	G	379.68	PASS	AC=2;AF=1;AN=2;DP=445;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:452,39,0:0,0,10,3
chr1	156434703	.	G	T	1495	PASS	AC=1;AF=0.733;AN=2;DP=2427;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,36:62:99:1032,0,640:13,13,22,14
chr1	156446242	.	C	A	3100.41	PASS	AC=1;AF=0.733;AN=2;DP=6790;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,76:161:99:1777,0,2317:57,28,48,28
chr1	156446450	.	C	T	1702.92	PASS	AC=1;AF=0.733;AN=2;DP=2317;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:1097,0,1226:10,28,6,30
chr1	156446903	.	T	C	3769.86	PASS	AC=1;AF=0.733;AN=2;DP=5800;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,78:140:99:1993,0,1193:30,32,31,47
chr1	156450719	.	G	A	1617.2	PASS	AC=1;AF=0.529;AN=2;DP=2163;MQ=60;set=variant8-variant14-variant15-variant18-variant19-variant23-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,64:140:99:1419,0,1668:38,38,29,35
chr1	156450740	.	G	A	3131.12	PASS	AC=1;AF=0.733;AN=2;DP=5019;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,69:133:99:1509,0,1587:28,36,33,36
chr1	156450873	.	T	C	663.47	PASS	AC=1;AF=0.761;AN=2;DP=1206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:273,0,428:3,10,1,8
chr1	156452870	.	G	A	1570.29	PASS	AC=1;AF=0.733;AN=2;DP=3056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,52:92:99:1393,0,1059:28,12,36,16
chr1	156453247	.	T	A	930.24	PASS	AC=1;AF=0.733;AN=2;DP=1873;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,18:52:99:411,0,877:10,24,6,12
chr1	156460308	.	T	A	817.35	PASS	AC=2;AF=0.955;AN=2;DP=1407;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1285,127,0:0,0,28,15
chr1	156460511	.	C	T	275.34	PASS	AC=1;AF=0.529;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant18-variant19-variant23-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:360,0,246:3,7,6,8
chr1	156495521	.	CAAAAAAAA	CAAAAAA,C,CAAAAAAAAAAAAA,CAAAAAAAAAAA,CAAAAAAAAAA,CAAAAAAA,CAAAAAAAAAAAA,CAAAAA,CAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAA	132.92	PASS	AC=0,0,1,0,0,0,0,0,0,0;AF=0.052,0.017,0.155,0.103,0.086,0.086,0.103,0.034,0.034,0.017;AN=2;DP=1562;set=filterInvariant-variant2-variant3-variant5-filterInvariant6-variant7-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant40-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/3:31:99:5,4,7,15
chr1	156496188	.	A	G	2526.96	PASS	AC=2;AF=0.989;AN=2;DP=4111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,117:118:99:3728,344,0:0,1,63,54
chr1	156498673	.	T	A	681.81	PASS	AC=1;AF=0.538;AN=2;DP=2806;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant26-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,53:138:99:1404,0,2417:51,34,29,24
chr1	156499969	.	T	C	2362.35	PASS	AC=1;AF=0.558;AN=2;DP=6195;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant26-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:147,127:274:99:3101,0,3544:59,88,52,75
chr1	156500128	.	T	C	406.73	PASS	AC=1;AF=0.5;AN=2;DP=334;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant25-variant31-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:286,0,298:2,8,1,8
chr1	156502991	.	A	G	314.32	PASS	AC=1;AF=0.554;AN=2;DP=892;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:342,0,658:5,17,0,10
chr1	156503541	.	T	C	191.63	PASS	AC=2;AF=1;AN=2;DP=1014;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:977,90,0:0,0,19,11
chr1	156504104	.	A	C	135.3	PASS	AC=1;AF=0.577;AN=2;DP=392;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant26-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:122,0,182:3,5,4,1
chr1	156504728	.	G	A	389.69	PASS	AC=1;AF=0.5;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant31-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:237,0,186:4,1,6,2
chr1	156505061	.	C	T	849.08	PASS	AC=1;AF=0.5;AN=2;DP=1228;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant25-variant31-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,50:85:99:1212,0,896:11,24,20,30
chr1	156509552	.	C	G	2473.02	PASS	AC=2;AF=1;AN=2;DP=3215;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2574,224,0:0,0,48,27
chr1	156509807	.	T	C	1066.73	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=2.367;FractionInformativeReads=1;MQ=60;MQRankSum=-2.593;QD=15.02;ReadPosRankSum=1.662;SOR=1.075;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:1095,0,1001:9,26,7,29
chr1	156510806	.	C	T	304.09	PASS	AC=1;AF=0.5;AN=2;DP=42;FractionInformativeReads=1;MQ=60;set=variant15-variant18	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:332,0,366:3,10,0,9
chr1	156518379	.	G	A	1284.63	PASS	AC=1;AF=0.5;AN=2;DP=2546;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant22-variant25-variant26-variant31-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,90:185:99:2272,0,2373:53,42,38,52
chr1	156520173	.	T	A	2040.58	PASS	AC=2;AF=0.989;AN=2;DP=4821;MQ=60;MQRankSum=-1.518;ReadPosRankSum=1.552;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3453,355,0:0,0,64,55
chr1	156520320	.	C	T	196.13	PASS	AC=1;AF=0.5;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant22-variant25-variant26-variant31-variant32-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:504,0,599:6,14,1,14
chr1	156524221	.	G	T	960.11	PASS	AC=1;AF=0.5;AN=2;DP=1463;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant22-variant25-variant26-variant31-variant32-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,31:91:99:841,0,1824:14,46,6,25
chr1	156526234	.	C	T	1099.55	PASS	AC=2;AF=0.989;AN=2;DP=2749;MQ=60;MQRankSum=-1.114;ReadPosRankSum=0.841;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2827,276,0:0,0,55,37
chr1	156526387	.	C	G	548.35	PASS	AC=1;AF=0.688;AN=2;DP=3610;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,66:108:99:1625,0,1017:17,25,31,35
chr1	156526444	.	T	C	982.89	PASS	AC=2;AF=0.989;AN=2;DP=2762;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2538,252,0:0,0,33,51
chr1	156526564	.	C	A	123.76	PASS	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant22-variant25-variant26-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:213,0,135:1,3,0,6
chr1	156531474	.	A	G	354.04	PASS	AC=2;AF=0.989;AN=2;DP=1269;FractionInformativeReads=1;MQ=60;MQRankSum=0.216;ReadPosRankSum=-0.216;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:883,90,0:0,0,19,11
chr1	156531871	.	A	G	2709.11	PASS	AC=2;AF=0.989;AN=2;DP=4341;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3677,350,0:0,0,40,77
chr1	156532344	.	T	G	1079.68	PASS	AC=1;AF=0.761;AN=2;DP=2896;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,53:87:99:1628,0,897:24,10,38,15
chr1	156532908	.	C	A	1215.7	PASS	AC=1;AF=0.761;AN=2;DP=6750;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:91,76:167:99:1708,0,2213:51,40,39,37
chr1	156532977	.	T	C	3172.06	PASS	AC=2;AF=0.989;AN=2;DP=5831;MQ=60;MQRankSum=1.536;ReadPosRankSum=-0.347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4326,435,0:0,0,61,84
chr1	156534525	.	A	C	524.85	PASS	AC=1;AF=0.726;AN=2;DP=1200;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:665,0,481:5,13,6,17
chr1	156534539	.	G	A	405.61	PASS	AC=1;AF=0.761;AN=2;DP=1039;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:515,0,449:4,13,5,14
chr1	156536123	.	T	C	331.77	PASS	AC=2;AF=0.989;AN=2;DP=739;FractionInformativeReads=1;MQ=60;MQRankSum=-1.359;ReadPosRankSum=-0.453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:81:1195,81,0:0,0,21,5
chr1	156536133	.	A	G	331.77	PASS	AC=2;AF=0.989;AN=2;DP=861;MQ=60;MQRankSum=-1.244;ReadPosRankSum=-2.096;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1310,90,0:0,0,24,6
chr1	156536221	.	G	C	1213.39	PASS	AC=2;AF=0.989;AN=2;DP=2879;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3007,279,0:0,0,58,35
chr1	156536251	.	T	C	1823.63	PASS	AC=2;AF=0.989;AN=2;DP=4016;FractionInformativeReads=1;MQ=60;MQRankSum=0.527;ReadPosRankSum=0.776;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3916,356,0:0,0,73,46
chr1	156536353	.	A	G	3544.08	PASS	AC=2;AF=0.989;AN=2;DP=7088;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:5393,567,0:0,0,93,97
chr1	156536480	.	T	C	1840.63	PASS	AC=2;AF=0.989;AN=2;DP=2431;MQ=60;MQRankSum=0.184;ReadPosRankSum=0.282;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1730,153,0:0,0,12,39
chr1	156538973	.	A	G	292.45	PASS	AC=2;AF=0.988;AN=2;DP=285;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,6,2
chr1	156539019	.	CA	C	519.09	PASS	AC=2;AF=0.988;AN=2;DP=538;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:388,42,0:0,0,6,8
chr1	156539154	.	T	C	1198.79	PASS	AC=2;AF=0.989;AN=2;DP=1942;MQ=60;MQRankSum=1.549;ReadPosRankSum=1.062;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1491,132,0:0,0,29,15
chr1	156539320	.	CTTTTTTT	CTTTTTTTTT,CTTTTTTTT,CTTTTTTTTTTT,CTTTTTT,C,CTTTTTTTTTT	152.57	PASS	AC=2,0,0,0,0,0;AF=0.211,0.316,0.026,0.026,0.026,0.026;AN=2;DP=556;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant14-variant15-filterInvariant16-variant21-variant23-variant25-filterInvariant26-variant28-variant31-variant32-variant33-variant41	GT:DP:GQ:SB	1/1:13:9:0,1,4,8
chr1	156542451	.	C	A	1172.61	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=2.016;FractionInformativeReads=1;MQ=60;MQRankSum=0.333;QD=14.13;ReadPosRankSum=2.329;SOR=1.061;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1201,0,989:13,27,11,32
chr1	156551848	.	A	G	1548.27	PASS	AC=1;AF=0.731;AN=2;DP=3956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1093,0,1527:21,33,18,28
chr1	156552711	.	C	G	266.62	PASS	AC=2;AF=0.528;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant25-variant31-variant32-variant34-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:765,51,0:0,0,14,3
chr1	156552720	.	T	G	468.2	PASS	AC=2;AF=0.932;AN=2;DP=807;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:59:825,59,0:0,0,16,4
chr1	156553102	.	AG	A	341.29	PASS	AC=2;AF=0.524;AN=2;DP=1225;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant25-variant26-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2907,234,0:0,0,38,40
chr1	156553494	.	T	C	345.46	PASS	AC=1;AF=0.5;AN=2;DP=1592;MQ=60;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant10-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant22-variant24-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant35-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:50,24:74:99:380,0,2654:7,43,24,0
chr1	156553501	.	T	C	41.14	PASS	AC=1;AF=0.5;AN=2;DP=2791;MQ=60;set=filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:69,21:90:99:302,0,3671:18,51,21,0
chr1	156553505	.	T	C	41.13	PASS	AC=1;AF=0.5;AN=2;DP=1743;MQ=60;set=filterInvariant2-variant4-filterInvariant5-filterInvariant10-filterInvariant12-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant28-filterInvariant29-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:74,13:87:99:292,0,3703:21,53,13,0
chr1	156553762	.	A	C	228.73	PASS	AC=2;AF=0.932;AN=2;DP=813;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:884,66,0:0,0,2,20
chr1	156556023	.	C	T	49.69	PASS	AC=2;AF=0.6;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant15-variant16-variant22-variant23-variant25-variant26-variant34-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:200,24,0:0,0,5,3
chr1	156556321	.	G	A	3048.23	PASS	AC=2;AF=0.907;AN=2;DP=5567;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4205,404,0:0,0,81,54
chr1	156556606	.	A	G	345.74	PASS	AC=2;AF=1;AN=2;DP=918;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:80:949,80,0:0,0,7,20
chr1	156561414	.	T	C	655.34	PASS	AC=2;AF=0.932;AN=2;DP=1207;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:605,63,0:0,0,13,8
chr1	156561557	.	G	GGGGCCGGGCC,GGGGTCGGGCC,GGGGCCGGGCCGGGCC	2495.94	PASS	AC=0,2,0;AF=0.648,0.295,0.057;AN=2;DP=2606;FS=0;set=Intersection	GT:DP:GQ:SB	2/2:92:99:0,0,61,31
chr1	156561651	.	G	C	5478.29	PASS	AC=2;AF=0.932;AN=2;DP=9206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,268:268:99:8102,804,0:0,0,159,109
chr1	156562008	.	G	A	2694.55	PASS	AC=2;AF=0.932;AN=2;DP=3184;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3115,288,0:0,0,30,66
chr1	156562143	.	G	A	605.04	PASS	AC=2;AF=0.932;AN=2;DP=1372;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:974,84,0:0,0,16,12
chr1	156562641	.	C	CCA	476	PASS	AC=2;AF=0.524;AN=2;DP=675;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant25-variant26-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1260,93,0:0,0,7,24
chr1	156563375	.	G	A	1266.67	PASS	AC=2;AF=0.932;AN=2;DP=3712;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3325,339,0:0,0,53,61
chr1	156563726	.	A	C	3362.84	PASS	AC=2;AF=0.932;AN=2;DP=6323;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6131,602,0:0,0,103,98
chr1	156563813	.	G	A	2921.79	PASS	AC=2;AF=0.932;AN=2;DP=4851;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4495,437,0:0,0,57,89
chr1	156563852	.	C	T	2101.31	PASS	AC=2;AF=0.932;AN=2;DP=3649;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3103,289,0:0,0,36,61
chr1	156563898	.	T	C	1450.6	PASS	AC=2;AF=0.932;AN=2;DP=2398;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2438,215,0:0,0,27,45
chr1	156563992	.	C	G	840.81	PASS	AC=2;AF=0.932;AN=2;DP=2028;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1763,171,0:0,0,25,32
chr1	156565049	.	A	AAC	12589	PASS	AC=2;AF=1;AN=2;DP=11760;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,270:270:99:12164,821,0:0,0,112,158
chr1	156565834	.	G	C	1008.84	PASS	AC=2;AF=0.524;AN=2;DP=1822;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant25-variant26-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3051,300,0:0,0,56,44
chr1	156589450	.	C	T	1516.59	PASS	AC=2;AF=0.524;AN=2;DP=3032;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant25-variant26-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,195:196:99:5973,541,0:1,0,86,109
chr1	156594364	.	T	C	1393.87	PASS	AC=2;AF=0.525;AN=2;DP=2654;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant25-variant26-variant31-variant32-variant34-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4132,387,0:0,0,60,69
chr1	156595447	.	G	A	2377.9	PASS	AC=2;AF=0.895;AN=2;DP=3527;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2785,291,0:0,0,51,47
chr1	156617968	.	G	A	1726.47	PASS	AC=2;AF=0.643;AN=2;DP=1908;MQ=60;set=variant3-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant31-variant33-variant36-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3224,308,0:0,0,37,66
chr1	156618768	.	T	G	314.43	PASS	AC=2;AF=0.683;AN=2;DP=553;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:418,36,0:0,0,3,9
chr1	156622252	.	G	A	1702.09	PASS	AC=2;AF=0.625;AN=2;DP=2640;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant30-variant31-variant33-variant36-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,139:140:99:4273,407,0:1,0,62,77
chr1	156622525	.	C	A	1340.78	PASS	AC=1;AF=0.5;AN=2;DP=361;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15	GT:AD:DP:GQ:PL:SB	0/1:60,67:127:99:1761,0,1559:33,27,36,31
chr1	156626358	.	C	A	333.13	PASS	AC=2;AF=0.667;AN=2;DP=708;MQ=60;set=variant3-filterInvariant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant29-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1086,84,0:0,0,5,23
chr1	156626920	.	T	C	5920.85	PASS	AC=2;AF=1;AN=2;DP=10102;FS=0;MQ=60;MQRankSum=1.313;ReadPosRankSum=0.853;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,241:241:99:7236,722,0:0,0,99,142
chr1	156628717	.	C	A	2165.01	PASS	AC=2;AF=0.611;AN=2;DP=2273;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant29-variant30-variant31-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2209,221,0:0,0,43,31
chr1	156629037	.	A	G	1282.37	PASS	AC=2;AF=0.625;AN=2;DP=2198;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant29-variant30-variant31-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2173,230,0:0,0,41,36
chr1	156638495	.	A	G	66.22	PASS	AC=1;AF=0.853;AN=2;DP=300;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:177,0,221:4,3,5,1
chr1	156639753	.	G	A	1584.85	PASS	AC=1;AF=0.763;AN=2;DP=7833;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:153,105:258:99:2531,0,4030:68,85,48,57
chr1	156640156	.	G	A	3147.98	PASS	AC=1;AF=0.763;AN=2;DP=11341;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:171,168:339:99:3847,0,4116:96,75,98,70
chr1	156640678	.	G	A,C	355.1	PASS	AC=1,0;AF=0.75,0.013;AN=2;DP=2443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:75:99:8,26,2,39
chr1	156641537	.	C	T	1475.82	PASS	AC=1;AF=0.571;AN=2;DP=2178;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant30-variant31-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,65:123:99:1703,0,1455:26,32,31,34
chr1	156646668	.	A	G	2610.86	PASS	AC=2;AF=0.989;AN=2;DP=3930;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3830,323,0:1,0,71,50
chr1	156670545	.	C	T	1399.26	PASS	AC=2;AF=0.977;AN=2;DP=1226;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1385,114,0:0,0,18,20
chr1	156692678	.	T	C	628.5	PASS	AC=2;AF=1;AN=2;DP=863;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:733,66,0:0,0,12,10
chr1	156693018	.	C	G	917.52	PASS	AC=1;AF=0.5;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant22-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:33,54:87:99:1358,0,915:16,17,29,25
chr1	156696603	.	G	A	768.33	PASS	AC=1;AF=0.5;AN=2;DP=286;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant22-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:810,0,979:27,9,21,10
chr1	156698265	.	C	T	960.69	PASS	AC=1;AF=0.615;AN=2;DP=1918;MQ=60;set=variant2-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:834,0,1065:21,28,13,26
chr1	156705593	.	G	C	5312.18	PASS	AC=2;AF=1;AN=2;DP=10444;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,296:296:99:8644,886,0:0,0,142,154
chr1	156706559	.	A	C,G	5984.76	PASS	AC=1,1;AF=0.33,0.67;AN=2;DP=6753;FS=0;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:191:99:0,0,102,89
chr1	156707775	.	T	G	767.56	PASS	AC=2;AF=1;AN=2;DP=2119;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1806,159,0:0,0,38,15
chr1	156713512	.	C	T	1226.57	PASS	AC=2;AF=1;AN=2;DP=2623;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2117,226,0:0,0,40,36
chr1	156713558	.	G	A	813.85	PASS	AC=1;AF=0.615;AN=2;DP=1474;set=variant2-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:823,0,1006:12,25,15,17
chr1	156752048	.	C	G	1933.58	PASS	AC=1;AF=0.776;AN=2;DP=2406;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,38:83:99:918,0,1166:24,21,19,19
chr1	156760887	.	C	A	1096.39	PASS	AC=1;AF=0.633;AN=2;DP=2554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1209,0,1145:30,24,27,24
chr1	156761618	.	C	T	2054.29	PASS	AC=1;AF=0.579;AN=2;DP=1438;MQ=60;set=variant5-variant9-variant10-variant14-variant15-variant20-variant21-variant24-variant25-variant26-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1229,0,1102:24,22,20,26
chr1	156770322	.	G	A	728.2	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:756,0,1297:27,29,20,18
chr1	156784982	.	T	C	1586.99	PASS	AC=1;AF=0.737;AN=2;DP=2032;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:827,0,1093:21,22,18,18
chr1	156785356	.	T	C	1060.39	PASS	AC=2;AF=0.976;AN=2;DP=2016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2432,198,0:0,0,50,16
chr1	156785617	.	G	A	2774.7	PASS	AC=1;AF=0.776;AN=2;DP=5562;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,68:161:99:1838,0,2479:37,56,30,38
chr1	156785762	.	AG	A	2179.51	PASS	AC=1;AF=0.724;AN=2;DP=3819;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,57:109:99:2210,0,4549:25,27,26,31
chr1	156785771	.	A	G	2364.75	PASS	AC=1;AF=0.737;AN=2;DP=3755;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,56:103:99:2417,0,4440:22,25,28,28
chr1	156785779	.	G	A	2067.87	PASS	AC=1;AF=0.776;AN=2;DP=3671;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,58:108:99:2270,0,4462:25,25,29,29
chr1	156786839	.	T	TTCTCTCTCTCTCTC,TTCTCCCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTC,TTCTCTC,TTCTCTCTCTCTCTCTCTC,TTCTC,TTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTC	251.09	PASS	AC=0,0,0,1,1,0,0,0,0,0;AF=0.1,0.017,0.067,0.3,0.25,0.033,0.05,0.067,0.033,0.033;AN=2;DP=608;set=variant-variant3-variant4-variant5-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	4/5:8:99:0,0,2,6
chr1	156810090	.	A	G	1025.05	PASS	AC=2;AF=0.886;AN=2;DP=1537;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1143,111,0:0,0,23,14
chr1	156810219	.	GA	G	353.89	PASS	AC=1;AF=0.531;AN=2;DP=587;set=variant5-variant11-variant14-variant15-variant17-variant20-variant24-variant25-variant26-variant30-variant33-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:660,0,653:4,8,7,11
chr1	156810221	.	G	GCC	353.89	PASS	AC=1;AF=0.531;AN=2;DP=573;MQ=60;set=variant5-variant11-variant14-variant15-variant17-variant20-variant24-variant25-variant26-variant30-variant33-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:660,0,653:4,8,7,11
chr1	156813650	.	T	C	178.26	PASS	AC=1;AF=0.522;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:224,0,287:7,4,5,4
chr1	156815921	.	C	T	2565.55	PASS	AC=1;AF=0.583;AN=2;DP=902;MQ=60;set=variant11-variant15-variant17-variant35-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:92,87:179:99:2110,0,2220:43,49,40,47
chr1	156816612	.	G	C	395.58	PASS	AC=1;AF=0.583;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant17-variant35-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:422,0,452:1,12,5,10
chr1	156845492	.	AGTGTGTGTGTGT	AGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGTGT,AGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGT	809.19	PASS	AC=1,0,0,0,0,0;AF=0.489,0.023,0.125,0.125,0.114,0.011;AN=2;DP=3699;set=Intersection	GT:DP:GQ:SB	0/1:50:99:11,20,6,13
chr1	156846233	.	G	A,T	1683.58	PASS	AC=1,0;AF=0.526,0.026;AN=2;DP=3274;MQ=60;set=variant2-variant3-variant4-variant9-variant11-variant14-variant15-variant20-variant22-variant24-variant25-variant26-variant32-variant33-variant34-variant35-variant36-variant38-variant43	GT:DP:GQ:SB	0/1:177:99:49,47,41,40
chr1	156848995	.	C	T	1218.43	PASS	AC=1;AF=0.763;AN=2;DP=6074;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,75:164:99:1933,0,2198:51,38,43,32
chr1	156863532	.	T	C	1122.87	PASS	AC=2;AF=1;AN=2;DP=1833;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1394,129,0:0,0,25,18
chr1	156863617	.	G	T	503.43	PASS	AC=1;AF=0.895;AN=2;DP=2218;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:328,0,661:13,13,8,9
chr1	156872149	.	G	A	418.52	PASS	AC=1;AF=0.768;AN=2;DP=2080;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:413,0,682:10,15,4,12
chr1	156873727	.	G	A	1495.79	PASS	AC=1;AF=0.563;AN=2;DP=1228;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24	GT:AD:DP:GQ:PL:SB	0/1:82,85:167:99:2106,0,2037:47,35,48,37
chr1	156875037	.	T	G	126.16	PASS	AC=1;AF=0.548;AN=2;DP=853;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant20-variant24-variant29-variant34-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:816,0,755:18,8,20,6
chr1	156875092	.	G	A	1297.23	PASS	AC=1;AF=0.762;AN=2;DP=3249;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,54:96:99:2256,0,1592:27,15,34,20
chr1	156875097	.	G	A	1375.13	PASS	AC=1;AF=0.786;AN=2;DP=3408;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,58:102:99:2301,0,1733:28,16,37,21
chr1	156875107	.	C	A	1357.89	PASS	AC=1;AF=0.762;AN=2;DP=3736;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,64:115:99:2358,0,1820:31,20,38,26
chr1	156875377	.	G	C	506.74	PASS	AC=2;AF=0.955;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:404,33,0:0,0,4,7
chr1	156875935	.	T	C	474.4	PASS	AC=1;AF=0.55;AN=2;DP=376;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:458,0,1017:26,5,13,6
chr1	156875985	.	G	A	1692.65	PASS	AC=2;AF=1;AN=2;DP=3677;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3699,346,0:0,0,76,40
chr1	156876206	.	G	A	1384.08	PASS	AC=1;AF=0.55;AN=2;DP=953;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1933,0,2953:15,34,18,35
chr1	156876221	.	G	A	1332.6	PASS	AC=1;AF=0.55;AN=2;DP=773;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1854,0,2903:13,32,14,33
chr1	156876237	.	C	T	1003.3	PASS	AC=1;AF=0.55;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:1406,0,2287:11,24,11,25
chr1	156876260	.	C	T	692.92	PASS	AC=1;AF=0.55;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:959,0,1878:10,20,7,18
chr1	156876373	.	A	G	312.06	PASS	AC=1;AF=0.55;AN=2;DP=443;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:760,0,705:21,5,20,4
chr1	156876729	.	T	C	690.49	PASS	AC=1;AF=0.55;AN=2;DP=770;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:1103,0,1064:11,27,8,29
chr1	156877249	.	A	G	313.78	PASS	AC=1;AF=0.55;AN=2;DP=410;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:799,0,863:22,10,21,8
chr1	156877457	.	T	C	2211.71	PASS	AC=2;AF=1;AN=2;DP=6402;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5040,476,0:0,0,71,88
chr1	156877797	.	C	A	3239.01	PASS	AC=1;AF=0.542;AN=2;DP=3932;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant15-variant20-variant24-variant29-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:235,148:383:99:3555,0,6237:124,111,77,71
chr1	156877884	.	T	TG	1767.61	PASS	AC=1;AF=0.556;AN=2;DP=1713;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant31	GT:AD:DP:GQ:PL:SB	0/1:137,80:217:99:1962,0,3778:71,66,47,33
chr1	156878435	.	C	T	230.62	PASS	AC=1;AF=0.542;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant15-variant20-variant24-variant29-variant31-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:238,0,307:8,6,5,5
chr1	156878531	.	T	C	742.38	PASS	AC=1;AF=0.542;AN=2;DP=785;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant15-variant20-variant24-variant29-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,47:73:99:1402,0,656:15,11,33,14
chr1	156878737	.	T	C	1068.77	PASS	AC=1;AF=0.542;AN=2;DP=1839;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant15-variant20-variant24-variant29-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,127:206:99:3082,0,1748:36,43,58,69
chr1	156878887	.	G	A	444.37	PASS	AC=1;AF=0.556;AN=2;DP=535;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant31	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:788,0,605:3,17,8,18
chr1	156879395	.	C	T	622.23	PASS	AC=1;AF=0.542;AN=2;DP=606;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant15-variant20-variant24-variant29-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:881,0,1017:27,7,26,5
chr1	156879504	.	A	G	1688.53	PASS	AC=1;AF=0.545;AN=2;DP=1820;MQ=60;set=variant-variant4-variant6-variant8-variant10-variant15-variant20-variant24-variant29-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:101,109:210:99:2734,0,2779:51,50,53,56
chr1	156879580	.	C	T	1640.63	PASS	AC=1;AF=0.563;AN=2;DP=1442;MQ=60;set=variant-variant4-variant6-variant8-variant15-variant20-variant24-variant31	GT:AD:DP:GQ:PL:SB	0/1:123,93:216:99:2197,0,3006:57,66,40,53
chr1	156881959	.	C	T	374.5	PASS	AC=1;AF=0.563;AN=2;DP=357;MQ=60;set=variant-variant4-variant6-variant8-variant15-variant20-variant24-variant31	GT:AD:DP:GQ:PL:SB	0/1:33,20:53:99:529,0,999:21,12,13,7
chr1	156882996	.	G	C	2913.87	PASS	AC=1;AF=0.536;AN=2;DP=4859;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant15-variant16-variant20-variant24-variant27-variant31-variant34-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:210,173:383:99:4032,0,5203:109,101,89,84
chr1	156883215	.	C	A	1294.82	PASS	AC=1;AF=0.556;AN=2;DP=1599;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant15-variant20-variant24-variant27-variant31	GT:AD:DP:GQ:PL:SB	0/1:76,87:163:99:2116,0,1916:30,46,35,52
chr1	156884103	.	T	A	133.42	PASS	AC=1;AF=0.5;AN=2;DP=129;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant11-variant15-variant20-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:62:62,0,117:2,3,1,2
chr1	156884365	.	T	C	1011.98	PASS	AC=1;AF=0.738;AN=2;DP=1823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:892,0,460:17,4,22,6
chr1	156884584	.	C	T	1711.06	PASS	AC=1;AF=0.5;AN=2;DP=1766;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,88:155:99:2129,0,1660:29,38,37,51
chr1	156885767	.	A	G	537.84	PASS	AC=1;AF=0.5;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,36:98:99:1023,0,1829:40,22,18,18
chr1	156890672	.	T	C	1479.74	PASS	AC=1;AF=0.5;AN=2;DP=1597;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,61:133:99:1747,0,1970:34,38,24,37
chr1	156894006	.	C	G	66.5	PASS	AC=1;AF=0.65;AN=2;DP=1023;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:318,0,549:7,13,5,8
chr1	156894613	.	G	T	939.13	PASS	AC=1;AF=0.5;AN=2;DP=1011;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,43:73:99:1285,0,815:24,6,30,13
chr1	156894825	.	C	T	486.14	PASS	AC=1;AF=0.5;AN=2;DP=1358;MQ=60;set=variant2-variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,47:99:99:1022,0,1288:19,33,13,34
chr1	156897967	.	G	C	520.37	PASS	AC=1;AF=0.526;AN=2;DP=626;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:408,0,568:7,15,9,10
chr1	156899288	.	G	A	480.78	PASS	AC=1;AF=0.5;AN=2;DP=730;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,37:63:99:1095,0,727:8,18,14,23
chr1	156899592	.	A	G	105.69	PASS	AC=1;AF=0.553;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:393,0,255:3,6,2,10
chr1	156901888	.	T	C	232.31	PASS	AC=1;AF=0.525;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:676,0,607:3,17,4,18
chr1	156902222	.	G	A	202.69	PASS	AC=1;AF=0.5;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:462,0,554:14,7,11,10
chr1	156902259	.	G	A	198.21	PASS	AC=1;AF=0.641;AN=2;DP=1884;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:836,0,1079:26,15,21,13
chr1	156902281	.	T	G	653.27	PASS	AC=1;AF=0.529;AN=2;DP=1094;MQ=60;set=variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,42:95:99:1056,0,1344:32,21,26,16
chr1	156902574	.	A	AT	154.85	PASS	AC=1;AF=0.526;AN=2;DP=945;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:292,0,738:14,18,9,9
chr1	156905584	.	A	G	1580.57	PASS	AC=1;AF=0.525;AN=2;DP=2486;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,72:138:99:1881,0,1586:35,31,36,36
chr1	156906093	.	C	T	663.55	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:692,0,707:9,17,6,19
chr1	156906881	.	G	A	361.48	PASS	AC=1;AF=0.5;AN=2;DP=549;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,11:37:99:218,0,818:16,10,5,6
chr1	156906910	.	C	T	335.34	PASS	AC=1;AF=0.526;AN=2;DP=869;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,8:39:99:226,0,1008:20,11,4,4
chr1	156907031	.	C	T	1306.03	PASS	AC=1;AF=0.5;AN=2;DP=1394;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,68:137:99:1601,0,1765:38,31,41,27
chr1	156907081	.	T	C	842.3	PASS	AC=1;AF=0.65;AN=2;DP=3780;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,82:146:99:1981,0,1552:30,34,47,35
chr1	156909303	.	T	A	1196.99	PASS	AC=1;AF=0.5;AN=2;DP=1383;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,51:113:99:1221,0,1442:36,26,33,18
chr1	156909695	.	G	A	770.25	PASS	AC=1;AF=0.5;AN=2;DP=1160;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,49:102:99:1236,0,1257:24,29,14,35
chr1	156911379	.	A	G	917.93	PASS	AC=1;AF=0.5;AN=2;DP=1012;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:985,0,792:9,20,8,23
chr1	156914070	.	C	A	809.43	PASS	AC=1;AF=0.5;AN=2;DP=861;FractionInformativeReads=1;set=variant2-variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:676,0,801:15,10,15,12
chr1	156914240	.	CCATTCATT	CCATT,C,CCATTCATTCATT	685.9	PASS	AC=0,1,0;AF=0.423,0.244,0.038;AN=2;DP=3909;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:104:99:30,36,18,20
chr1	156915038	.	C	T	760.26	PASS	AC=1;AF=0.524;AN=2;DP=1388;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,49:105:99:1185,0,1427:19,37,17,32
chr1	156916640	.	G	GCCTATCCCTT	601.32	PASS	AC=1;AF=0.524;AN=2;DP=1146;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:1122,0,2248:7,15,8,20
chr1	156925435	.	T	C	2241.77	PASS	AC=1;AF=0.5;AN=2;DP=2278;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:89,92:181:99:2302,0,2285:57,32,57,35
chr1	156927751	.	T	C	456.95	PASS	AC=1;AF=0.5;AN=2;DP=481;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:548,0,265:1,8,5,14
chr1	156928776	.	A	T	586.49	PASS	AC=1;AF=0.5;AN=2;DP=1263;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:956,0,934:20,18,22,15
chr1	156930053	.	C	T	211.91	PASS	AC=1;AF=0.5;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:332,0,418:11,1,8,2
chr1	156939067	.	G	A	687.28	PASS	AC=1;AF=0.5;AN=2;DP=694;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,38:68:99:972,0,792:19,11,25,13
chr1	156939175	.	C	T	650.69	PASS	AC=1;AF=0.59;AN=2;DP=3709;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,53:99:99:1309,0,1095:24,22,25,28
chr1	156941412	.	T	G	2754.3	PASS	AC=1;AF=0.5;AN=2;DP=3203;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:152,115:267:99:2801,0,3824:78,74,65,50
chr1	156946898	.	T	G	1552.08	PASS	AC=1;AF=0.5;AN=2;DP=1958;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:91,66:157:99:1472,0,2468:31,60,27,39
chr1	156947928	.	T	C	1865.92	PASS	AC=1;AF=0.5;AN=2;DP=2236;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,98:169:99:2536,0,1892:34,37,44,54
chr1	156947953	.	A	T	1837.56	PASS	AC=1;AF=0.5;AN=2;DP=2266;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,96:169:99:2552,0,1920:35,38,48,48
chr1	156949153	.	CTTTT	CTTT,CT,CTTTTTT,CTT,CTTTTT,C	121.2	PASS	AC=1,0,0,0,0,0;AF=0.2,0.02,0.12,0.04,0.12,0.02;AN=2;DP=1052;set=variant4-variant5-variant9-variant10-variant12-variant14-filterInvariant15-filterInvariant18-filterInvariant19-filterInvariant20-variant21-variant24-variant26-filterInvariant27-variant28-variant31-filterInvariant33-variant34-variant36-variant38-variant39-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/1:26:87:3,13,1,9
chr1	156954267	.	C	T	765.9	PASS	AC=1;AF=0.569;AN=2;DP=4574;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,73:144:99:1887,0,1733:26,45,28,45
chr1	156954384	.	T	C	353.24	PASS	AC=1;AF=0.571;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:715,0,285:3,7,1,18
chr1	157014702	.	G	A	2075.83	PASS	AC=1;AF=0.608;AN=2;DP=7402;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,89:214:99:2165,0,3009:66,59,44,45
chr1	157014964	.	T	A	1822.06	PASS	AC=1;AF=0.571;AN=2;DP=4813;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:112,106:218:99:2298,0,2456:56,56,49,57
chr1	157043491	.	A	G	266.3	PASS	AC=1;AF=0.619;AN=2;DP=2586;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,48:107:99:1268,0,1463:29,30,22,26
chr1	157061973	.	C	T	435.23	PASS	AC=1;AF=0.638;AN=2;DP=1415;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,36:83:99:928,0,1193:26,21,21,15
chr1	157062364	.	G	A	2106.31	PASS	AC=1;AF=0.635;AN=2;DP=2384;MQ=60;set=variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,43:95:99:1100,0,1445:30,22,24,19
chr1	157062696	.	G	T	3934.78	PASS	AC=1;AF=0.625;AN=2;DP=3372;MQ=60;set=variant2-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,86:161:99:2197,0,1866:35,40,38,48
chr1	157069154	.	A	G	1664.77	PASS	AC=1;AF=0.5;AN=2;DP=2504;set=variant2-variant7-variant10-variant11-variant14-variant15-variant16-variant27-variant29-variant30-variant31-variant34-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,82:179:99:2075,0,2460:53,44,44,38
chr1	157094030	.	CAAA	CAA,C,CA	886.14	PASS	AC=1,0,0;AF=0.28,0.122,0.256;AN=2;DP=5534;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:117:99:10,21,69,17
chr1	157094381	.	T	C	987.18	PASS	AC=1;AF=0.5;AN=2;DP=528;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant20-variant24-variant25	GT:AD:DP:GQ:PL:SB	0/1:40,52:92:99:1475,0,1085:12,28,18,34
chr1	157094546	.	T	TTCC,TTCCC,TCCC,TTC,TTCCCCC	103.39	PASS	AC=1,0,0,0,0;AF=0.192,0.038,0.077,0.154,0.038;AN=2;DP=340;set=variant2-variant6-variant10-variant12-variant15-variant16-variant18-variant22-filterInvariant25-variant26-variant34-variant36-variant39	GT:DP:GQ:SB	0/1:26:99:1,19,6,0
chr1	157094550	.	T	C	177.98	PASS	AC=1;AF=0.5;AN=2;DP=518;set=variant-variant2-variant4-variant6-variant10-variant12-variant15-filterInvariant16-variant17-variant18-variant22-filterInvariant23-filterInvariant25-variant26-filterInvariant31-variant34-variant36-variant37-variant39-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:19,7:26:99:200,0,521:0,19,7,0
chr1	157094558	.	A	C	126.84	PASS	AC=1;AF=0.5;AN=2;DP=403;set=variant-variant2-variant4-variant6-variant10-variant12-variant15-variant16-variant17-variant18-filterInvariant25-variant26-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:23,6:29:99:143,0,1407:4,19,6,0
chr1	157483440	.	C	T	168.71	PASS	AC=1;AF=0.662;AN=2;DP=1346;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:539,0,524:8,11,6,14
chr1	157483865	.	C	T	224	PASS	AC=1;AF=0.662;AN=2;DP=1220;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:588,0,444:6,12,9,13
chr1	157484575	.	A	G	601.82	PASS	AC=1;AF=0.662;AN=2;DP=2547;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:1095,0,1161:23,21,23,17
chr1	157484698	.	T	C	1069.54	PASS	AC=1;AF=0.5;AN=2;DP=340;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:45,52:97:99:1390,0,1052:23,22,30,22
chr1	157485275	.	T	G	1167.2	PASS	AC=1;AF=0.5;AN=2;DP=1194;MQ=60;set=variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant20-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,62:114:99:1513,0,1344:33,19,36,26
chr1	157485429	.	C	G	1671.52	PASS	AC=1;AF=0.5;AN=2;DP=734;MQ=60;set=variant11-variant13-variant14-variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:81,85:166:99:2088,0,2046:37,44,39,46
chr1	157485504	.	G	A	1440.19	PASS	AC=1;AF=0.5;AN=2;DP=552;MQ=60;set=variant11-variant13-variant14-variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:60,70:130:99:2100,0,1576:28,32,29,41
chr1	157485720	.	T	C	359.81	PASS	AC=2;AF=0.989;AN=2;DP=660;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;ReadPosRankSum=-1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:664,48,0:0,0,4,12
chr1	157491173	.	T	A	1493.9	PASS	AC=1;AF=0.779;AN=2;DP=2536;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:877,0,874:18,23,11,25
chr1	157493685	.	G	C	11408.9	PASS	AC=2;AF=0.826;AN=2;DP=14827;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,389:389:99:11838,1167,0:0,0,212,177
chr1	157497263	.	T	C	1526.54	PASS	AC=2;AF=0.83;AN=2;DP=1930;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2294,219,0:0,0,49,24
chr1	157501930	.	G	A	8554.59	PASS	AC=2;AF=0.826;AN=2;DP=10365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,281:282:99:8662,796,0:0,1,148,133
chr1	157502830	.	T	C	8142.3	PASS	AC=2;AF=0.826;AN=2;DP=8663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6559,602,0:0,0,99,102
chr1	157508882	.	C	T	412.08	PASS	AC=2;AF=0.826;AN=2;DP=1080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1120,99,0:0,0,21,12
chr1	157509005	.	A	G	686.07	PASS	AC=1;AF=0.5;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant26-variant34	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1310,0,1375:28,26,27,24
chr1	157509025	.	C	T	995.4	PASS	AC=2;AF=0.83;AN=2;DP=4689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3397,356,0:0,0,59,60
chr1	157514091	.	C	T	904.78	PASS	AC=2;AF=0.633;AN=2;DP=1618;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant21-variant24-variant26-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:5155,346,0:0,0,65,49
chr1	157514097	.	A	G	3256.18	PASS	AC=2;AF=0.817;AN=2;DP=4498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5246,355,0:0,0,67,51
chr1	157517127	.	C	T	192.28	PASS	AC=2;AF=0.643;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant13-variant14-variant15-variant16-variant21-variant24-variant26-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2614,258,0:0,0,48,38
chr1	157522016	.	G	A	530.6	PASS	AC=2;AF=0.633;AN=2;DP=446;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant21-variant24-variant26-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1294,96,0:0,0,30,2
chr1	157543746	.	C	T	2066.08	PASS	AC=2;AF=0.581;AN=2;DP=6909;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:11000,755,0:0,0,114,135
chr1	157543762	.	C	T	6660.09	PASS	AC=2;AF=0.83;AN=2;DP=9542;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,236:236:99:10545,713,0:0,0,105,131
chr1	157543878	.	G	A	1591.65	PASS	AC=2;AF=0.641;AN=2;DP=2229;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3271,240,0:0,0,41,39
chr1	157545047	.	A	G	698.8	PASS	AC=2;AF=0.636;AN=2;DP=1848;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2048,204,0:0,0,36,32
chr1	157545231	.	G	T	449.69	PASS	AC=2;AF=0.636;AN=2;DP=1690;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1899,180,0:0,0,30,30
chr1	157548669	.	T	A	809.56	PASS	AC=2;AF=0.636;AN=2;DP=939;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1291,123,0:0,0,11,31
chr1	157557957	.	T	C	789.48	PASS	AC=2;AF=0.603;AN=2;DP=1808;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1990,177,0:0,0,18,41
chr1	157566019	.	G	A	326.38	PASS	AC=2;AF=0.611;AN=2;DP=446;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:268,21,0:0,0,6,1
chr1	157566211	.	A	G	1112.82	PASS	AC=2;AF=0.603;AN=2;DP=2550;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2696,270,0:0,0,42,48
chr1	157567751	.	A	G	293.08	PASS	AC=2;AF=0.814;AN=2;DP=3228;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2453,237,0:0,0,40,39
chr1	157647789	.	C	A	6471.1	PASS	AC=2;AF=0.765;AN=2;DP=15914;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,554:555:99:17158,1654,0:1,0,291,263
chr1	157648098	.	G	A	2491.98	PASS	AC=2;AF=0.611;AN=2;DP=5086;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:6284,588,0:0,0,77,119
chr1	157651017	.	T	C	346.97	PASS	AC=2;AF=0.615;AN=2;DP=637;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1164,102,0:0,0,8,26
chr1	157652929	.	TA	T	581.22	PASS	AC=2;AF=0.625;AN=2;DP=1612;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2429,243,0:0,0,52,29
chr1	157666256	.	T	C	797.9	PASS	AC=2;AF=0.591;AN=2;DP=894;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant21-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1881,153,0:0,0,12,39
chr1	157666336	.	C	G	273.95	PASS	AC=2;AF=0.595;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant21-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:513,51,0:0,0,6,11
chr1	157668390	.	T	C	1350.88	PASS	AC=2;AF=0.71;AN=2;DP=2924;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3215,288,0:0,0,37,59
chr1	157669580	.	T	A	1028.28	PASS	AC=2;AF=0.591;AN=2;DP=1655;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant21-variant24-variant25-variant26-variant28-variant32-variant33-variant34-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2022,194,0:0,0,26,39
chr1	157670290	.	C	G	624.2	PASS	AC=2;AF=0.717;AN=2;DP=2626;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2718,264,0:0,0,47,41
chr1	157680273	.	T	C	1081.83	PASS	AC=2;AF=0.575;AN=2;DP=1455;set=variant3-variant6-variant7-variant8-variant13-variant14-variant15-variant16-variant21-variant24-variant25-variant26-variant28-variant32-variant33-variant34-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2788,263,0:0,0,36,52
chr1	157718283	.	A	T	1682.86	PASS	AC=2;AF=0.881;AN=2;DP=2364;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2342,192,0:0,0,44,19
chr1	157718325	.	T	G	832.43	PASS	AC=1;AF=0.563;AN=2;DP=1549;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant10-variant13-variant14-variant15-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1252,0,1125:29,21,34,13
chr1	157718430	.	T	G	857.61	PASS	AC=1;AF=0.563;AN=2;DP=1470;MQ=60;set=variant-variant3-variant7-variant10-variant13-variant14-variant15-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,57:95:99:1357,0,897:15,23,26,31
chr1	157718645	.	T	C	256.52	PASS	AC=1;AF=0.563;AN=2;DP=800;MQ=60;set=variant-variant3-variant7-variant10-variant13-variant14-variant15-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,27:71:99:658,0,1066:25,19,16,11
chr1	157718780	.	A	G	746.59	PASS	AC=1;AF=0.563;AN=2;DP=1368;MQ=60;set=variant-variant3-variant7-variant10-variant13-variant14-variant15-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,43:107:99:1003,0,1481:30,34,22,21
chr1	157718835	.	G	A	575.69	PASS	AC=1;AF=0.563;AN=2;DP=879;MQ=60;set=variant-variant3-variant7-variant10-variant13-variant14-variant15-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,28:71:99:605,0,1094:18,25,10,18
chr1	157736431	.	C	A	6506.14	PASS	AC=1;AF=0.553;AN=2;DP=9714;set=variant-variant3-variant7-variant8-variant10-variant13-variant14-variant15-variant18-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:291,279:570:99:6363,0,7135:157,134,156,123
chr1	157737504	.	G	A	738.31	PASS	AC=2;AF=0.71;AN=2;DP=935;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1220,126,0:0,0,16,26
chr1	157740186	.	GTC	G	3247.16	PASS	AC=2;AF=0.724;AN=2;DP=2111;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3849,259,0:0,0,45,40
chr1	157740189	.	A	G	3256.19	PASS	AC=2;AF=0.724;AN=2;DP=2130;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3849,259,0:0,0,45,41
chr1	157744142	.	A	T	1036.23	PASS	AC=1;AF=0.553;AN=2;DP=1222;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant22-variant26-variant31-variant34-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,41:81:99:979,0,953:20,20,25,16
chr1	157764964	.	C	T	250.39	PASS	AC=1;AF=0.567;AN=2;DP=357;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant13-variant14-variant15-variant21-variant25-variant28-variant32-variant33-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:533,0,477:2,12,8,13
chr1	157768000	.	G	C	772.87	PASS	AC=1;AF=0.55;AN=2;DP=1370;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant22-variant26-variant31-variant34-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,32:77:99:779,0,1214:25,20,17,15
chr1	157801578	.	T	A	599.18	PASS	AC=1;AF=0.579;AN=2;DP=1159;MQ=60;set=variant-variant11-variant13-variant14-variant15-variant18-variant21-variant24-variant25-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:1003,0,985:19,21,12,20
chr1	157802979	.	C	T	1138.58	PASS	AC=1;AF=0.775;AN=2;DP=4555;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,66:137:99:1881,0,1699:35,36,31,35
chr1	157806006	.	G	A	1627.35	PASS	AC=1;AF=0.775;AN=2;DP=7235;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,103:208:99:2349,0,2632:43,62,45,58
chr1	157811392	.	G	A	540.65	PASS	AC=1;AF=0.775;AN=2;DP=2433;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1167,0,867:22,15,30,15
chr1	157963362	.	GCGGGCTCC	G	1054.8	PASS	AC=1;AF=0.625;AN=2;DP=1577;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:1219,0,3197:32,7,28,4
chr1	158045655	.	A	G	317.23	PASS	AC=2;AF=0.806;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:362,33,0:0,0,8,3
chr1	158045749	.	A	G	536.5	PASS	AC=2;AF=0.803;AN=2;DP=1065;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1016,96,0:0,0,20,12
chr1	158047657	.	G	A	214.33	PASS	AC=1;AF=0.5;AN=2;DP=202;MQ=60;set=variant11-variant15-variant17-variant20-variant23-variant31-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:413,0,632:16,1,10,2
chr1	158054379	.	A	G	2003.13	PASS	AC=1;AF=0.571;AN=2;DP=3061;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,63:128:99:1734,0,1620:19,46,18,45
chr1	158056213	.	AAC	AACACAC,AACAC,AACACACAC,A	646.33	PASS	AC=0,0,1,0;AF=0.5,0.13,0.074,0.019;AN=2;DP=427;set=variant3-variant4-variant8-variant9-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:14:99:6,1,5,2
chr1	158056299	.	C	G	3599.96	PASS	AC=1;AF=0.648;AN=2;DP=2287;set=variant3-variant4-variant9-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,57:109:99:1542,0,1162:33,19,38,19
chr1	158056549	.	G	C	504.85	PASS	AC=1;AF=0.5;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant8-variant13-variant14-variant15-variant18-variant21-variant31-variant32-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:851,0,473:4,13,4,23
chr1	158057420	.	A	T	415.27	PASS	AC=2;AF=0.667;AN=2;DP=2094;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2379,227,0:0,0,45,31
chr1	158058109	.	C	A	2243.57	PASS	AC=2;AF=0.683;AN=2;DP=4935;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5537,529,0:0,0,112,65
chr1	158058266	.	CTTTT	CT,CTTT,CTT,CTTTTT,C	337.49	PASS	AC=0,2,0,0,0;AF=0.139,0.167,0.181,0.069,0.028;AN=2;DP=4119;set=variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant7-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-filterInvariant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:46:10:2,5,5,34
chr1	158065762	.	C	T	129.16	PASS	AC=1;AF=0.583;AN=2;DP=518;MQ=60;set=variant-variant3-variant5-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant34-variant35-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:416,0,296:5,9,8,10
chr1	158066042	.	A	G	636.69	PASS	AC=2;AF=0.703;AN=2;DP=1380;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1282,123,0:0,0,20,21
chr1	158066834	.	A	G	2101.64	PASS	AC=2;AF=0.703;AN=2;DP=5067;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:5936,575,0:0,0,100,92
chr1	158067047	.	A	C	2370.69	PASS	AC=2;AF=0.661;AN=2;DP=7141;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,274:275:99:12148,802,0:1,0,149,125
chr1	158067060	.	TG	T	2718.86	PASS	AC=2;AF=0.703;AN=2;DP=7796;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,300:300:99:13006,908,0:0,0,162,138
chr1	158068344	.	A	G	338.05	PASS	AC=2;AF=0.661;AN=2;DP=1051;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1343,117,0:0,0,19,20
chr1	158069099	.	G	A	209.43	PASS	AC=2;AF=0.732;AN=2;DP=2094;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1608,153,0:0,0,28,23
chr1	158153996	.	T	C	5190.18	PASS	AC=2;AF=1;AN=2;DP=6675;FS=0;MQ=60;MQRankSum=0.133;ReadPosRankSum=0.763;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6314,583,0:0,0,92,103
chr1	158224282	.	A	G	343.99	PASS	AC=1;AF=0.531;AN=2;DP=705;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant15-variant18-variant20-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:583,0,890:18,16,14,13
chr1	158224575	.	CTGTGTGTGTGTGTGTGTG	C,CTGTGTGTGTG,CTGTGTGTGTGTG,CTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG,CTGTG,CTGTGTG	1394.96	PASS	AC=0,0,0,1,0,0,0,0;AF=0.075,0.113,0.275,0.088,0.15,0.063,0.013,0.025;AN=2;DP=3223;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:35:99:2,13,6,14
chr1	158224825	.	C	T	1360.06	PASS	AC=1;AF=0.548;AN=2;DP=2133;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,54:121:99:1331,0,1644:40,27,32,22
chr1	158226407	.	C	A	398.14	PASS	AC=1;AF=0.5;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant15-variant18-variant27-variant29-variant31-variant33-variant34-variant39	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:285,0,140:4,0,7,2
chr1	158226465	.	CAA	CA,CAAA,C	87.05	PASS	AC=1,0,0;AF=0.476,0.024,0.024;AN=2;DP=997;set=filterInvariant3-variant5-variant6-variant13-variant14-variant15-variant18-filterInvariant19-filterInvariant22-variant25-variant27-filterInvariant28-variant29-variant31-variant32-variant33-variant34-filterInvariant37-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:50:99:16,5,22,7
chr1	158226814	.	G	A	1448.86	PASS	AC=1;AF=0.5;AN=2;DP=460;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:91,78:169:99:1756,0,2319:41,50,37,41
chr1	158322961	.	T	C	88.51	PASS	AC=2;AF=0.988;AN=2;DP=279;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.307;ReadPosRankSum=-0.361;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:301,24,0:0,0,7,1
chr1	158324425	.	A	G	2880.07	PASS	AC=1;AF=0.617;AN=2;DP=2918;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,48:123:99:1128,0,1890:34,41,23,25
chr1	158326447	.	CTT	CTTT,C,CT	1058.24	PASS	AC=1,0,0;AF=0.471,0.029,0.059;AN=2;DP=892;MQ=60;set=variant-variant5-variant6-variant9-variant13-variant15-variant20-variant25-variant27-variant30-variant31-variant33-variant34-variant37-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:62:99:19,18,15,10
chr1	158368315	.	G	A	1755.19	PASS	AC=1;AF=0.5;AN=2;DP=976;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant14-variant15-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,100:182:99:2381,0,1962:40,42,56,44
chr1	158368541	.	A	G	3950.03	PASS	AC=1;AF=0.583;AN=2;DP=3764;MQ=60;set=variant-variant5-variant6-variant9-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,70:153:99:1903,0,2103:38,45,32,38
chr1	158368846	.	T	C	2833.85	PASS	AC=1;AF=0.583;AN=2;DP=2594;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,57:109:99:1552,0,1279:24,28,31,26
chr1	158369319	.	C	A	486.75	PASS	AC=1;AF=0.587;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:186,0,175:1,5,2,5
chr1	158389208	.	G	GA	1089.29	PASS	AC=1;AF=0.579;AN=2;DP=454;MQ=60;set=variant3-variant5-variant11-variant13-variant15-variant16-variant17-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,9:31:99:163,0,650:7,15,1,8
chr1	158389209	.	A	AG	472.57	PASS	AC=1;AF=0.583;AN=2;DP=312;MQ=60;set=variant-variant6-variant9-variant14-variant15-variant20-variant21-variant29-variant30-variant31-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,22:32:99:600,0,310:2,8,7,15
chr1	158389630	.	G	C	268.71	PASS	AC=1;AF=0.609;AN=2;DP=406;FractionInformativeReads=1;set=variant-variant5-variant6-variant9-variant13-variant14-variant15-variant17-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:162,0,501:11,5,4,3
chr1	158389659	.	T	C	252.6	PASS	AC=2;AF=0.685;AN=2;DP=709;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1198,105,0:0,0,23,12
chr1	158389693	.	C	T	1642.86	PASS	AC=1;AF=0.571;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant16-variant27-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:14,37:51:99:1063,0,330:8,6,23,14
chr1	158390252	.	T	G	1683.78	PASS	AC=2;AF=0.685;AN=2;DP=4075;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5796,519,0:0,0,96,77
chr1	158390501	.	G	A	2100.26	PASS	AC=2;AF=0.685;AN=2;DP=4692;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:5879,567,0:0,0,74,116
chr1	158390834	.	C	A	703.92	PASS	AC=2;AF=0.685;AN=2;DP=1322;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1657,167,0:0,0,22,34
chr1	158435250	.	C	T	843.16	PASS	AC=1;AF=0.692;AN=2;DP=2043;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:820,0,1230:30,14,21,14
chr1	158435278	.	G	A	1254.96	PASS	AC=2;AF=0.75;AN=2;DP=3259;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3650,356,0:0,0,73,46
chr1	158435928	.	G	A	7381.1	PASS	AC=1;AF=0.571;AN=2;DP=1466;MQ=60;set=variant3-variant11-variant15-variant16-variant27-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:107,117:224:99:3155,0,2977:45,62,49,68
chr1	158436299	.	T	C	5514.94	PASS	AC=2;AF=0.721;AN=2;DP=13955;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,454:454:99:13894,1360,0:0,0,219,235
chr1	158436354	.	AT	A	4662.5	PASS	AC=2;AF=0.742;AN=2;DP=10780;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,376:376:99:11471,1130,0:0,0,179,197
chr1	158450192	.	C	T	7344.53	PASS	AC=1;AF=0.563;AN=2;DP=1403;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant16-variant25-variant27-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:110,86:196:99:2267,0,2760:53,57,32,54
chr1	158450314	.	A	G	1883.16	PASS	AC=1;AF=0.667;AN=2;DP=4008;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,91:171:99:2322,0,1956:35,45,45,46
chr1	158507157	.	A	T	1974.63	PASS	AC=1;AF=0.662;AN=2;DP=3085;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,59:115:99:2256,0,2675:36,20,37,22
chr1	158507160	.	T	G	1971.64	PASS	AC=1;AF=0.662;AN=2;DP=3168;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,60:117:99:2282,0,2693:36,21,38,22
chr1	158507222	.	GA	G	1674.31	PASS	AC=1;AF=0.662;AN=2;DP=4352;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,71:153:99:1707,0,2032:42,40,33,38
chr1	158507360	.	G	C	1495.05	PASS	AC=1;AF=0.563;AN=2;DP=340;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant16-variant25-variant27-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:874,0,777:7,21,11,22
chr1	158507398	.	G	T	109.98	PASS	AC=1;AF=0.667;AN=2;DP=757;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:513,0,409:1,11,2,13
chr1	158549421	.	G	A	4732.12	PASS	AC=1;AF=0.563;AN=2;DP=886;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant16-variant25-variant27-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:1614,0,1922:38,30,33,33
chr1	158576809	.	C	T	3162.7	PASS	AC=1;AF=0.5;AN=2;DP=238;FS=3.605;FractionInformativeReads=1;MQ=60;MQRankSum=-0.83;QD=13.29;ReadPosRankSum=1.846;SOR=0.501;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:111,127:238:99:3191,0,2952:49,62,63,64
chr1	158580477	.	A	G	2076.3	PASS	AC=1;AF=0.64;AN=2;DP=3197;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,82:184:99:2081,0,2978:52,50,45,37
chr1	158580759	.	G	A	2907.31	PASS	AC=1;AF=0.688;AN=2;DP=8118;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,142:300:99:3624,0,4041:80,78,75,67
chr1	158580887	.	T	C	2403.12	PASS	AC=1;AF=0.64;AN=2;DP=4586;set=variant-variant3-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:118,104:222:99:2767,0,2780:52,66,43,61
chr1	158580921	.	GCACA	GCACACACACACACA,GCA,GCACACACACA,G,GCACACA,GCACACACACACACACA,GCGCACACA,GCACACACA,GCACACACACACA	1968.25	PASS	AC=0,1,0,0,0,0,0,0,1;AF=0.128,0.267,0.081,0.07,0.047,0.012,0.012,0.116,0.105;AN=2;DP=5568;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/9:97:99:1,2,28,66
chr1	158582646	.	T	C	956.74	PASS	AC=1;AF=0.688;AN=2;DP=3712;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,96:167:99:2280,0,1623:34,37,43,53
chr1	158584091	.	A	G	1125.18	PASS	AC=1;AF=0.688;AN=2;DP=1633;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,21:62:99:630,0,1871:19,22,9,12
chr1	158584103	.	GA	GAA,GAAA,G	864.18	PASS	AC=1,0,0;AF=0.471,0.176,0.044;AN=2;DP=1670;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:63:99:19,22,9,13
chr1	158587390	.	C	T	1073.97	PASS	AC=1;AF=0.688;AN=2;DP=3022;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,63:116:99:1552,0,1250:27,26,34,29
chr1	158587784	.	T	G	501.06	PASS	AC=2;AF=1;AN=2;DP=1360;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=1.542;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:915,78,0:0,0,17,9
chr1	158587858	.	G	A	442.77	PASS	AC=1;AF=0.615;AN=2;DP=1298;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:557,0,856:18,15,12,15
chr1	158588916	.	C	G	260.37	PASS	AC=1;AF=0.603;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:419,0,367:10,2,11,3
chr1	158592935	.	G	A	1436.49	PASS	AC=1;AF=0.603;AN=2;DP=4201;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,78:181:99:1796,0,2607:42,61,32,46
chr1	158595824	.	T	C	598.46	PASS	AC=1;AF=0.615;AN=2;DP=798;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:415,0,385:10,5,11,3
chr1	158595842	.	C	A	686.66	PASS	AC=1;AF=0.615;AN=2;DP=1185;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:544,0,551:15,7,15,4
chr1	158596524	.	A	G	546.22	PASS	AC=1;AF=0.615;AN=2;DP=745;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:494,0,791:19,8,14,6
chr1	158597309	.	A	G	742.04	PASS	AC=1;AF=0.538;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant33-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:656,0,715:17,9,17,5
chr1	158597507	.	G	C	1164.56	PASS	AC=1;AF=0.615;AN=2;DP=1881;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,52:89:99:1270,0,971:11,26,22,30
chr1	158606449	.	G	T	1347.87	PASS	AC=1;AF=0.603;AN=2;DP=3277;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,77:142:99:1834,0,1422:38,27,39,38
chr1	158607788	.	T	G	1494.46	PASS	AC=2;AF=1;AN=2;DP=1906;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1564,135,0:0,0,35,10
chr1	158609300	.	C	G	861.98	PASS	AC=1;AF=0.615;AN=2;DP=2181;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,58:117:99:1271,0,1432:30,29,30,28
chr1	158612236	.	A	G	841.26	PASS	AC=1;AF=0.686;AN=2;DP=3087;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,53:120:99:1107,0,1532:37,30,30,23
chr1	158614198	.	C	T	805.06	PASS	AC=1;AF=0.603;AN=2;DP=2111;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1261,0,1251:15,30,22,28
chr1	158618223	.	C	T	205.39	PASS	AC=1;AF=0.672;AN=2;DP=1055;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:499,0,537:12,6,12,6
chr1	158618480	.	A	T	286.31	PASS	AC=1;AF=0.625;AN=2;DP=641;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant11-variant14-variant15-variant17-variant20-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:647,0,460:6,12,9,17
chr1	158619728	.	A	C	2741.21	PASS	AC=2;AF=0.989;AN=2;DP=4186;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3310,315,0:0,0,51,54
chr1	158637865	.	GAAA	GAA,G,GA,GAAAA	149.5	PASS	AC=0,0,1,0;AF=0.269,0.256,0.064,0.013;AN=2;DP=1106;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:21:99:4,7,3,7
chr1	158639601	.	A	G	1596.92	PASS	AC=1;AF=0.7;AN=2;DP=3254;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,49:109:99:1183,0,1483:26,34,19,30
chr1	158647495	.	A	T	3091.88	PASS	AC=2;AF=0.989;AN=2;DP=4278;MQ=60;MQRankSum=-1.285;ReadPosRankSum=1.176;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2952,296,0:0,0,52,47
chr1	158647522	.	A	G	1269.49	PASS	AC=2;AF=0.625;AN=2;DP=3050;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3225,329,0:0,0,53,57
chr1	158647631	.	T	A	1124.6	PASS	AC=2;AF=0.989;AN=2;DP=1677;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1634,155,0:0,0,18,34
chr1	158647669	.	T	C	188.93	PASS	AC=2;AF=0.625;AN=2;DP=687;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,29:31:58:936,58,0:1,1,7,22
chr1	158654786	.	C	T	467.35	PASS	AC=2;AF=1;AN=2;DP=505;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:970,72,0:0,0,22,2
chr1	158654852	.	A	G	707.28	PASS	AC=2;AF=0.629;AN=2;DP=1504;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2348,209,0:0,0,51,19
chr1	158655036	.	G	A	6042.15	PASS	AC=2;AF=1;AN=2;DP=7051;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:5977,592,0:0,0,89,109
chr1	158655162	.	C	A	2388.06	PASS	AC=2;AF=1;AN=2;DP=3612;FS=0;MQ=60;MQRankSum=-0.17;ReadPosRankSum=0.713;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2806,257,0:0,0,26,60
chr1	158656281	.	T	C	1859.38	PASS	AC=2;AF=1;AN=2;DP=2020;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2019,168,0:0,0,45,11
chr1	158656347	.	C	CAGAG,CAGAGAGAG	4289.09	PASS	AC=2,0;AF=0.989,0.011;AN=2;DP=4183;FS=0;set=Intersection	GT:DP:GQ:SB	1/1:91:99:0,0,57,34
chr1	158656432	.	G	GA,GAA,GGA	1680.96	PASS	AC=2,0,0;AF=0.613,0.016,0.048;AN=2;DP=6152;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:198:99:5,3,95,95
chr1	158656632	.	G	GA,GAA	1067.42	PASS	AC=2,0;AF=0.455,0.489;AN=2;DP=1004;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:25:75:0,0,4,21
chr1	158656641	.	C	A	861.09	PASS	AC=2;AF=0.955;AN=2;DP=829;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:648,57,0:0,0,1,18
chr1	158656653	.	A	T	713.74	PASS	AC=2;AF=1;AN=2;DP=610;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:367,30,0:0,0,1,9
chr1	158669342	.	T	TGTTTG	34.59	PASS	AC=2;AF=0.638;AN=2;DP=519;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:99:1413,99,0:0,0,14,15
chr1	158687163	.	G	A	1529.54	PASS	AC=2;AF=0.63;AN=2;DP=3132;MQ=60;set=variant-variant3-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3585,329,0:0,0,57,53
chr1	158687224	.	G	A	1311.85	PASS	AC=2;AF=0.619;AN=2;DP=2922;MQ=60;set=variant-variant3-variant6-variant8-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3972,363,0:0,0,61,60
chr1	158724469	.	GA	G,GAA	2068.33	PASS	AC=1,0;AF=0.368,0.158;AN=2;DP=4200;MQ=60;set=variant-variant3-variant8-variant10-variant11-variant15-variant16-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant37-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:228:99:75,37,83,33
chr1	158725080	.	C	T	2499.58	PASS	AC=1;AF=0.545;AN=2;DP=2213;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant11-variant15-variant16-variant22-variant27-variant28-variant29-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,113:231:99:2784,0,3096:58,60,57,56
chr1	158735595	.	C	T	1870.34	PASS	AC=1;AF=0.813;AN=2;DP=7365;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:111,103:214:99:2713,0,2707:59,52,59,44
chr1	158735691	.	T	C	1771.48	PASS	AC=1;AF=0.813;AN=2;DP=7917;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,124:229:99:3164,0,2633:56,49,61,63
chr1	158735740	.	A	G	1594.3	PASS	AC=1;AF=0.813;AN=2;DP=7388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,107:196:99:2859,0,2180:45,44,44,63
chr1	158735892	.	A	G	1123.03	PASS	AC=1;AF=0.813;AN=2;DP=4335;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,57:125:99:1550,0,1911:30,38,27,30
chr1	158736215	.	G	A	2927.37	PASS	AC=2;AF=0.92;AN=2;DP=5559;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4508,436,0:0,0,66,80
chr1	158813819	.	A	G	1141.1	PASS	AC=1;AF=0.662;AN=2;DP=3793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,58:102:99:1427,0,1076:28,16,38,20
chr1	158817474	.	A	G	704.48	PASS	AC=1;AF=0.611;AN=2;DP=439;MQ=60;set=variant2-variant4-variant5-variant7-variant11-variant14-variant15-variant16-variant18-variant24-variant27-variant29-variant31-variant33-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:328,0,383:10,2,9,0
chr1	158819324	.	G	C	1824.34	PASS	AC=1;AF=0.662;AN=2;DP=4887;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,73:154:99:1750,0,1984:39,42,29,44
chr1	158909164	.	C	A	2376.71	PASS	AC=2;AF=0.779;AN=2;DP=2180;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2488,184,0:0,0,43,18
chr1	158913525	.	A	G	1950.08	PASS	AC=2;AF=0.966;AN=2;DP=1581;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1879,126,0:0,0,25,15
chr1	158913532	.	C	T	1943.51	PASS	AC=2;AF=0.685;AN=2;DP=1063;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1950,135,0:0,0,28,17
chr1	158943295	.	TCACACA	TCACACACACA,TCACACACA,TCA,TCACA,T	527.17	PASS	AC=0,2,0,0,0;AF=0.14,0.674,0.081,0.012,0.012;AN=2;DP=671;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:12:36:0,0,12,0
chr1	158946830	.	C	CT	514.19	PASS	AC=2;AF=0.965;AN=2;DP=974;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:56:514,56,0:0,0,11,8
chr1	158979950	.	A	G	240.92	PASS	AC=1;AF=0.5;AN=2;DP=402;MQ=60;set=variant9-variant14-variant15-variant23-variant26-variant27-variant28-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:647,0,543:8,14,9,17
chr1	158984322	.	G	A	454.48	PASS	AC=1;AF=0.5;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant26-variant28-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:502,0,239:7,1,13,3
chr1	158985652	.	T	C	585.22	PASS	AC=1;AF=0.5;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant26-variant28-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,38:68:99:950,0,751:18,12,22,16
chr1	158985831	.	C	T	289.4	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant26-variant28-variant34-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:371,0,278:1,7,2,10
chr1	158986477	.	G	C	5689.27	PASS	AC=1;AF=0.786;AN=2;DP=6054;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,96:198:99:2459,0,2480:59,43,58,38
chr1	158987941	.	A	G	906.91	PASS	AC=2;AF=0.805;AN=2;DP=1021;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:905,78,0:0,0,20,6
chr1	159002222	.	A	G	825.42	PASS	AC=2;AF=0.857;AN=2;DP=1243;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1675,126,0:0,0,38,4
chr1	159002301	.	T	C	2128.8	PASS	AC=2;AF=0.857;AN=2;DP=4829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4620,454,0:0,0,94,58
chr1	159002377	.	C	A	2913.52	PASS	AC=2;AF=0.857;AN=2;DP=7438;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,207:208:99:6191,611,0:1,0,101,106
chr1	159002389	.	T	A	2762.21	PASS	AC=2;AF=0.857;AN=2;DP=7036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:5942,580,0:0,0,90,104
chr1	159032255	.	G	T	1502.35	PASS	AC=2;AF=0.905;AN=2;DP=2470;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2078,197,0:0,0,40,26
chr1	159169463	.	C	T	1720.03	PASS	AC=1;AF=0.553;AN=2;DP=3863;MQ=60;set=variant-variant3-variant5-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant27-variant31-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:131,111:242:99:2532,0,3120:68,63,61,50
chr1	159169641	.	T	C	1398.35	PASS	AC=2;AF=0.744;AN=2;DP=4632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4170,386,0:0,0,55,74
chr1	159170353	.	TC	T	561.85	PASS	AC=1;AF=0.667;AN=2;DP=763;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant26-variant27-variant28-variant31-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:833,0,489:9,5,16,7
chr1	159170986	.	T	G	483.06	PASS	AC=1;AF=0.677;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:66:66,0,203:5,2,2,2
chr1	159174824	.	G	C	5715.86	PASS	AC=2;AF=1;AN=2;DP=8688;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6354,615,0:0,0,93,112
chr1	159174885	.	T	C	2382.21	PASS	AC=1;AF=0.556;AN=2;DP=2638;MQ=60;set=variant3-variant9-variant11-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant28-variant33-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,57:134:99:1647,0,2079:27,50,19,38
chr1	159175004	.	CT	C	1643.22	PASS	AC=1;AF=0.814;AN=2;DP=1876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:597,0,568:6,15,7,14
chr1	159175193	.	A	G	1371.11	PASS	AC=1;AF=0.611;AN=2;DP=1143;set=variant3-variant14-variant15-variant20-variant23-variant24-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:81,75:156:99:1859,0,2120:50,31,44,31
chr1	159175354	.	G	A	5261.06	PASS	AC=1;AF=0.695;AN=2;DP=10966;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:149,161:310:99:4128,0,3940:72,77,86,75
chr1	159259680	.	T	G	37.69	PASS	AC=1;AF=0.696;AN=2;DP=411;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:386,0,312:0,8,0,10
chr1	159272060	.	T	C	799.33	PASS	AC=1;AF=0.587;AN=2;DP=1643;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,55:106:99:1352,0,1275:31,20,35,20
chr1	159320979	.	G	A	1556.04	PASS	AC=1;AF=0.69;AN=2;DP=3403;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,77:161:99:1679,0,2040:40,44,39,38
chr1	159402584	.	G	GT	4436.21	PASS	AC=2;AF=0.965;AN=2;DP=5779;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:5382,457,0:0,0,54,98
chr1	159402695	.	A	C	1568.95	PASS	AC=2;AF=0.965;AN=2;DP=2364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2242,210,0:0,0,30,40
chr1	159409196	.	T	C	1466.9	PASS	AC=2;AF=0.965;AN=2;DP=2092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1717,156,0:0,0,37,15
chr1	159409533	.	G	A	12692.7	PASS	AC=2;AF=0.965;AN=2;DP=16125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,471:471:99:13731,1407,0:0,0,232,239
chr1	159409734	.	G	T	7205.62	PASS	AC=2;AF=0.989;AN=2;DP=9097;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:8213,744,0:0,0,107,141
chr1	159409857	.	A	G	4955.12	PASS	AC=2;AF=0.819;AN=2;DP=5624;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:6006,566,0:0,0,82,107
chr1	159505101	.	G	A	1662.35	PASS	AC=1;AF=0.55;AN=2;DP=1298;MQ=60;set=variant9-variant11-variant15-variant19-variant24-variant26-variant27-variant28-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:70,71:141:99:2043,0,1810:27,43,31,40
chr1	159505297	.	C	T	4735.51	PASS	AC=1;AF=0.813;AN=2;DP=7453;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,120:237:99:2856,0,2747:61,56,66,54
chr1	159558258	.	A	G	1938.82	PASS	AC=1;AF=0.833;AN=2;DP=6699;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,89:200:99:2117,0,2881:56,55,49,40
chr1	159558672	.	G	T	1243.4	PASS	AC=1;AF=0.5;AN=2;DP=660;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:80,52:132:99:1272,0,2023:30,50,17,35
chr1	159683091	.	G	A	5142.92	PASS	AC=1;AF=0.619;AN=2;DP=2340;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:53,71:124:99:1972,0,1465:21,32,27,44
chr1	159684047	.	CCACACACACACA	CCACACACACACACA,CCACA,C,CCA,CCACACACA,CCACACACACACACACA,CCACACACACA	220.97	PASS	AC=0,1,0,0,0,1,0;AF=0.122,0.488,0.049,0.098,0.012,0.024,0.012;AN=2;DP=1262;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/6:22:99:0,1,15,6
chr1	159684121	.	CT	C	90.6	PASS	AC=1;AF=0.5;AN=2;DP=1704;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-variant10-variant11-filterInvariant14-variant15-variant16-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,15:48:99:209,0,602:17,16,7,8
chr1	159684186	.	T	A	1698.42	PASS	AC=1;AF=0.619;AN=2;DP=1313;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:942,0,1139:17,23,18,18
chr1	159778699	.	G	A	923.54	PASS	AC=2;AF=0.638;AN=2;DP=3006;set=variant2-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3532,328,0:0,0,76,34
chr1	159779122	.	GT	G	1247.85	PASS	AC=2;AF=0.75;AN=2;DP=214;FS=0;MQ=60;MQRankSum=1.459;ReadPosRankSum=0.772;set=variant7-variant15	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4619,363,0:0,0,47,74
chr1	159785284	.	C	G	3280.67	PASS	AC=2;AF=0.78;AN=2;DP=10308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,321:322:99:9795,919,0:0,1,176,145
chr1	159796430	.	G	A	366.63	PASS	AC=2;AF=0.75;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.788;ReadPosRankSum=2.729;set=variant7-variant15	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:957,81,0:0,0,18,9
chr1	159799599	.	C	CA	4106.1	PASS	AC=2;AF=0.872;AN=2;DP=5517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:6042,541,0:0,0,109,71
chr1	159802627	.	A	C	1170.46	PASS	AC=1;AF=0.5;AN=2;DP=1103;set=variant2-variant7-variant11-variant12-variant15-variant18-variant26-variant42	GT:AD:DP:GQ:PL:SB	0/1:93,98:191:99:2423,0,2338:54,39,55,43
chr1	159804282	.	C	G	205.05	PASS	AC=1;AF=0.521;AN=2;DP=518;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:313,0,494:11,9,8,3
chr1	159807969	.	A	T	368.65	PASS	AC=1;AF=0.523;AN=2;DP=421;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:333,0,633:2,17,4,10
chr1	159824967	.	G	C	3498.3	PASS	AC=2;AF=0.898;AN=2;DP=5083;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4292,423,0:0,0,78,63
chr1	159825916	.	C	T	3476.26	PASS	AC=2;AF=0.638;AN=2;DP=4076;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:5592,576,0:0,0,84,109
chr1	159827365	.	CA	CAAAA,CAAA,CAA,CAAAAA,C	141.87	PASS	AC=2,0,0,0,0;AF=0.214,0.286,0.071,0.071,0.024;AN=2;DP=207;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant15-variant16-variant19-variant22-variant23-variant24-variant27-variant28-variant32-variant34-variant36-variant38-variant42-variant43	GT:DP:GQ:SB	1/1:9:22:1,0,5,3
chr1	159827456	.	A	G	1626.58	PASS	AC=2;AF=0.798;AN=2;DP=1970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1503,132,0:0,0,30,14
chr1	159828128	.	A	G	1318.27	PASS	AC=2;AF=0.886;AN=2;DP=3005;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2728,245,0:0,0,34,48
chr1	159828746	.	G	A	722.63	PASS	AC=2;AF=0.793;AN=2;DP=1588;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1677,150,0:0,0,14,36
chr1	159832425	.	G	A	2946.28	PASS	AC=2;AF=0.757;AN=2;DP=3969;set=variant-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,122:123:99:3935,357,0:0,1,39,83
chr1	159842088	.	T	A	1607.92	PASS	AC=2;AF=0.849;AN=2;DP=2246;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2275,210,0:0,0,48,22
chr1	159842103	.	C	T	1857.33	PASS	AC=2;AF=0.757;AN=2;DP=2295;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2869,275,0:0,0,59,33
chr1	159842566	.	T	A	323.54	PASS	AC=2;AF=0.764;AN=2;DP=471;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:256,21,0:0,0,6,1
chr1	159842691	.	C	G	1318.08	PASS	AC=2;AF=0.757;AN=2;DP=3335;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3000,287,0:0,0,62,34
chr1	159854392	.	C	A	1076.84	PASS	AC=2;AF=0.849;AN=2;DP=1628;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1703,140,0:0,0,9,38
chr1	159860259	.	G	A	1520.3	PASS	AC=1;AF=0.58;AN=2;DP=3442;MQ=60;set=variant-variant5-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:55,88:143:99:2400,0,1315:32,23,51,37
chr1	159860547	.	CTT	CTTT,C,CT,CTTTT,CTTTTT	192.53	PASS	AC=1,0,0,0,0;AF=0.333,0.037,0.111,0.019,0.019;AN=2;DP=1006;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-variant9-variant13-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-filterInvariant25-filterInvariant29-variant30-filterInvariant33-variant34-variant35-variant37-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:20:99:0,11,2,7
chr1	159889686	.	G	A	1034.35	PASS	AC=1;AF=0.689;AN=2;DP=3422;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,58:105:99:1449,0,1200:21,26,23,35
chr1	159894146	.	C	T	563.25	PASS	AC=2;AF=0.955;AN=2;DP=1380;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1354,113,0:0,0,31,7
chr1	159895536	.	G	A	414.23	PASS	AC=1;AF=0.68;AN=2;DP=680;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant35-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:599,0,274:4,8,6,15
chr1	159896887	.	CAGAGAGAGAG	CAGAGAG,C,CAGAGAGAG,CAGAGAGAGAGAGAGAGAGAGAGAG,CAG,CAGAGAGAGAGAG,CAGAGAGAGAGAGAG	118.65	PASS	AC=0,0,0,0,1,0,0;AF=0.083,0.042,0.125,0.042,0.125,0.042,0.042;AN=2;DP=147;FS=0;set=variant-variant5-variant11-variant14-variant15-variant17-variant20-variant21-variant24-variant27-variant37-variant42	GT:DP:GQ:SB	0/5:18:99:8,2,6,2
chr1	159896897	.	G	C	68.12	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=0;set=variant6-variant15-variant21-variant37	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:150,0,491:8,2,5,1
chr1	159897126	.	C	T	2081.08	PASS	AC=1;AF=0.672;AN=2;DP=1758;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:1014,0,1021:24,12,23,15
chr1	159897327	.	C	T	1227.21	PASS	AC=1;AF=0.559;AN=2;DP=1797;MQ=60;set=variant3-variant5-variant6-variant7-variant11-variant13-variant15-variant21-variant22-variant24-variant25-variant28-variant29-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,58:140:99:1368,0,1959:38,44,28,30
chr1	159897681	.	TAA	TA,T	1861.76	PASS	AC=1,1;AF=0.636,0.352;AN=2;DP=4367;set=Intersection	GT:DP:GQ:SB	2/1:90:99:0,0,43,47
chr1	159898913	.	A	G	2627.92	PASS	AC=1;AF=0.672;AN=2;DP=1764;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:920,0,932:18,12,15,17
chr1	159901972	.	A	G	84.19	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant15-variant21-variant22-variant25	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:289,0,141:1,4,2,7
chr1	159902526	.	T	C	2242.06	PASS	AC=1;AF=0.661;AN=2;DP=1190;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:776,0,679:9,16,9,19
chr1	159904202	.	G	A	2374.48	PASS	AC=1;AF=0.5;AN=2;DP=1441;MQ=60;set=variant5-variant6-variant15-variant21-variant22-variant25-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:101,103:204:99:2644,0,2583:50,51,54,49
chr1	159906849	.	A	G	512.27	PASS	AC=1;AF=0.714;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:99:111,0,372:5,8,0,4
chr1	159912533	.	AGTGT	A,AGT	829.52	PASS	AC=1,1;AF=0.576,0.258;AN=2;DP=788;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:25:99:0,0,19,6
chr1	159912899	.	C	T	1133.04	PASS	AC=1;AF=0.5;AN=2;DP=388;set=variant8-variant9-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:67,45:112:99:1095,0,1787:24,43,12,33
chr1	159913053	.	C	T	329.2	PASS	AC=1;AF=0.5;AN=2;DP=631;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant11-variant15-variant20-variant27-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:35,59:94:99:1449,0,832:22,13,34,25
chr1	159913388	.	G	A	503.42	PASS	AC=1;AF=0.691;AN=2;DP=1914;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:1047,0,1025:14,25,14,25
chr1	159922369	.	C	T	1751.65	PASS	AC=1;AF=0.93;AN=2;DP=3406;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,43:102:99:1026,0,1524:27,32,18,25
chr1	159922458	.	A	G	625.6	PASS	AC=1;AF=0.559;AN=2;DP=865;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant21-variant28-variant32-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:735,0,838:10,18,7,17
chr1	159923111	.	T	G	2758.73	PASS	AC=1;AF=0.93;AN=2;DP=4717;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,69:121:99:1807,0,1341:30,22,44,25
chr1	159998579	.	TA	T	9155.13	PASS	AC=2;AF=0.768;AN=2;DP=13987;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,336:337:99:9356,1004,0:1,0,173,163
chr1	159999335	.	A	G	860.4	PASS	AC=1;AF=0.567;AN=2;DP=314;FractionInformativeReads=1;set=variant7-variant8-variant9-variant13-variant15-variant20-variant24-variant27-variant29-variant30-variant34-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:414,0,478:12,5,11,2
chr1	159999567	.	CTTT	CTT,CTTTTTTTT,C,CTTTT,CTTTTTT,CTTTTTTT,CT,CTTTTT	155.41	PASS	AC=0,0,0,0,0,0,1,0;AF=0.16,0.02,0.02,0.16,0.04,0.04,0.04,0.06;AN=2;DP=1524;set=variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-filterInvariant16-variant19-variant23-variant26-variant27-variant28-filterInvariant29-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	0/7:30:99:6,10,2,12
chr1	159999682	.	ATT	AT,ATTT,A	50.48	PASS	AC=0,1,0;AF=0.4,0.1,0.05;AN=2;DP=118;set=variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant29-variant31-variant37	GT:DP:GQ:SB	0/2:16:99:7,2,3,4
chr1	160009121	.	A	C	272.92	PASS	AC=1;AF=0.667;AN=2;DP=402;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:255,0,316:6,3,1,6
chr1	160009143	.	G	C	322.84	PASS	AC=2;AF=1;AN=2;DP=526;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:51:678,51,0:0,0,9,7
chr1	160009163	.	GACACACACACACAC	GACACAC,GACAC,GACACACACACAC,GACACACACAC,GACACACACACACACAC,GACACACACACACACACACAC,GACACACAC,G,GAC	93.39	PASS	AC=0,0,0,0,0,0,1,0,0;AF=0.313,0.047,0.047,0.156,0.063,0.016,0.031,0.063,0.016;AN=2;DP=441;set=variant-variant3-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/7:16:99:5,4,4,3
chr1	160009419	.	A	C	244.61	PASS	AC=2;AF=0.841;AN=2;DP=1385;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1216,128,0:0,0,20,23
chr1	160057964	.	C	T	471.99	PASS	AC=1;AF=0.583;AN=2;DP=1696;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:809,0,903:15,20,13,18
chr1	160058000	.	C	T	547.81	PASS	AC=1;AF=0.5;AN=2;DP=555;MQ=60;set=variant11-variant15-variant21-variant24-variant29-variant31-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,27:62:99:685,0,873:15,20,11,16
chr1	160061853	.	G	A	312.92	PASS	AC=1;AF=0.5;AN=2;DP=278;MQ=60;set=variant11-variant15-variant21-variant24-variant29-variant31-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:391,0,242:6,2,6,7
chr1	160061934	.	T	C	621.71	PASS	AC=1;AF=0.5;AN=2;DP=901;MQ=60;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:678,0,1192:21,9,12,5
chr1	160061959	.	C	T	774.95	PASS	AC=1;AF=0.5;AN=2;DP=1140;MQ=60;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,24:69:99:779,0,1637:31,14,19,5
chr1	160062472	.	C	T	2599.13	PASS	AC=1;AF=0.5;AN=2;DP=2728;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:130,102:232:99:2409,0,3175:60,70,47,55
chr1	160062727	.	A	G	2801.15	PASS	AC=1;AF=0.5;AN=2;DP=2500;MQ=60;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,79:147:99:2043,0,1840:35,33,42,37
chr1	160068068	.	A	C	807.12	PASS	AC=1;AF=0.641;AN=2;DP=2274;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:1178,0,1265:28,21,32,17
chr1	160085868	.	A	C	297.42	PASS	AC=1;AF=0.722;AN=2;DP=1252;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:773,0,656:8,17,12,20
chr1	160085955	.	A	C	94.66	PASS	AC=1;AF=0.538;AN=2;DP=273;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:254,0,265:2,6,0,7
chr1	160090674	.	T	C	1052.02	PASS	AC=2;AF=1;AN=2;DP=2030;FS=0;MQ=60;MQRankSum=0.933;ReadPosRankSum=1.599;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1798,174,0:0,0,36,22
chr1	160090681	.	CCCTT	C	698.45	PASS	AC=2;AF=0.81;AN=2;DP=2144;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2768,187,0:0,0,39,23
chr1	160093222	.	C	T	3016.19	PASS	AC=2;AF=0.989;AN=2;DP=8150;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:6045,594,0:0,0,77,122
chr1	160093911	.	T	C	2743.33	PASS	AC=2;AF=0.989;AN=2;DP=4686;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3716,351,0:0,0,44,73
chr1	160093927	.	T	A	1459.54	PASS	AC=1;AF=0.621;AN=2;DP=2861;MQ=60;set=variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1005,0,1391:19,35,22,25
chr1	160094343	.	T	C	842.12	PASS	AC=1;AF=0.556;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant11-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant32-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:315,0,649:11,13,6,9
chr1	160094458	.	A	G	237.04	PASS	AC=2;AF=1;AN=2;DP=332;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:358,27,0:0,0,2,7
chr1	160095127	.	T	A	661.5	PASS	AC=1;AF=0.694;AN=2;DP=1063;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,22:28:99:667,0,186:3,3,7,15
chr1	160097666	.	G	A	2138.59	PASS	AC=1;AF=0.821;AN=2;DP=3736;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,35:91:99:885,0,1636:27,29,19,16
chr1	160098927	.	A	AG	149.73	PASS	AC=1;AF=0.845;AN=2;DP=659;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:148,0,259:6,2,3,2
chr1	160121488	.	G	T	1144.24	PASS	AC=1;AF=0.579;AN=2;DP=1932;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,50:121:99:1087,0,1761:34,37,25,25
chr1	160121746	.	C	T	813.82	PASS	AC=1;AF=0.579;AN=2;DP=1361;MQ=60;set=variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,40:81:99:1140,0,1079:22,19,22,18
chr1	160122826	.	G	A	466.31	PASS	AC=1;AF=0.579;AN=2;DP=1224;set=variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:728,0,1146:28,10,19,8
chr1	160124875	.	G	A	2123.7	PASS	AC=1;AF=0.788;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1145,0,924:25,14,26,20
chr1	160128671	.	G	A	500.5	PASS	AC=1;AF=0.658;AN=2;DP=1618;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,37:55:99:1137,0,506:14,4,29,8
chr1	160128994	.	C	T	1046.66	PASS	AC=2;AF=0.929;AN=2;DP=1492;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1644,132,0:0,0,17,27
chr1	160134205	.	C	T	810.02	PASS	AC=1;AF=0.713;AN=2;DP=2754;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,72:112:99:2018,0,1028:10,30,21,51
chr1	160137300	.	A	C	838.44	PASS	AC=2;AF=0.685;AN=2;DP=1787;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant23-variant24-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2650,242,0:0,0,23,58
chr1	160140998	.	G	A	554.76	PASS	AC=2;AF=0.655;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant24-variant26-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:569,45,0:0,0,14,1
chr1	160141196	.	C	T	3666.67	PASS	AC=2;AF=0.977;AN=2;DP=4304;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4381,463,0:0,0,83,72
chr1	160141285	.	C	T	5573.75	PASS	AC=2;AF=0.633;AN=2;DP=1452;MQ=60;set=variant3-variant6-variant7-variant12-variant13-variant15-variant29-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:5801,400,0:0,0,60,69
chr1	160141286	.	C	G	777.36	PASS	AC=2;AF=0.646;AN=2;DP=2335;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant23-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:5801,400,0:0,0,59,71
chr1	160143284	.	GT	G	2205.77	PASS	AC=1;AF=0.5;AN=2;DP=232;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:45,59:104:99:2066,0,1501:35,10,43,16
chr1	160145586	.	G	T	97.37	PASS	AC=2;AF=0.536;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant31-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:440,30,0:0,0,10,0
chr1	160145688	.	C	G	449.7	PASS	AC=2;AF=0.663;AN=2;DP=2571;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2421,243,0:0,0,48,33
chr1	160146173	.	T	C	1264.38	PASS	AC=2;AF=0.556;AN=2;DP=1733;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant21-variant27-variant29-variant31-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4574,399,0:0,0,76,57
chr1	160147502	.	T	G	690.82	PASS	AC=2;AF=0.628;AN=2;DP=4233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,119:120:99:5249,360,0:1,0,53,66
chr1	160147510	.	G	A	1137.97	PASS	AC=2;AF=0.556;AN=2;DP=1895;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant21-variant27-variant29-variant31-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:5294,370,0:0,0,51,70
chr1	160151345	.	CAA	CA,C	42.41	PASS	AC=1,0;AF=0.552,0.034;AN=2;DP=418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant35-variant36-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:12:33:2,1,8,1
chr1	160151421	.	G	C	604.12	PASS	AC=2;AF=0.553;AN=2;DP=1150;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant21-variant27-variant29-variant31-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2257,201,0:0,0,47,20
chr1	160151450	.	T	C	2302.92	PASS	AC=2;AF=0.671;AN=2;DP=3055;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2705,264,0:0,0,55,33
chr1	160151624	.	G	GC	2874.1	PASS	AC=2;AF=0.661;AN=2;DP=3903;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4942,447,0:0,0,69,78
chr1	160156027	.	C	G	506.48	PASS	AC=2;AF=0.568;AN=2;DP=1038;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant19-variant21-variant22-variant27-variant31-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1714,165,0:0,0,37,18
chr1	160163446	.	C	T	267.8	PASS	AC=1;AF=0.667;AN=2;DP=1045;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:719,0,631:17,1,18,3
chr1	160163509	.	C	T	955.24	PASS	AC=1;AF=0.64;AN=2;DP=2160;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant12-variant14-variant15-variant18-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,65:115:99:1541,0,1063:29,21,37,28
chr1	160164668	.	T	C	441.31	PASS	AC=2;AF=0.989;AN=2;DP=725;FS=0;MQ=60;MQRankSum=0.684;ReadPosRankSum=0.322;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:513,45,0:0,0,11,4
chr1	160165095	.	A	C	380.41	PASS	AC=1;AF=0.625;AN=2;DP=1133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:464,0,594:15,6,13,3
chr1	160165451	.	C	T	581.77	PASS	AC=1;AF=0.661;AN=2;DP=866;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:604,0,458:4,13,6,17
chr1	160167546	.	T	C	336.07	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.421;QD=18.67;ReadPosRankSum=1.171;SOR=0.527;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:364,0,159:1,5,3,9
chr1	160168368	.	G	A	1680.07	PASS	AC=1;AF=0.648;AN=2;DP=3654;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,94:186:99:2242,0,2178:57,35,60,34
chr1	160169473	.	T	C	811	PASS	AC=2;AF=1;AN=2;DP=1205;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1158,90,0:0,0,26,4
chr1	160175210	.	A	AGCG	659.3	PASS	AC=1;AF=0.676;AN=2;DP=2223;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,50:91:99:1969,0,1647:23,18,32,18
chr1	160178356	.	A	G	2430.06	PASS	AC=2;AF=1;AN=2;DP=4199;FS=0;MQ=60;MQRankSum=1.417;ReadPosRankSum=1.638;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3195,322,0:0,0,62,46
chr1	160182684	.	A	G	317.5	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant15-variant37	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:346,0,839:17,11,9,4
chr1	160187173	.	A	G	1388.28	PASS	AC=1;AF=0.886;AN=2;DP=2037;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:703,0,647:13,12,17,8
chr1	160233265	.	CA	CAA,C	83.35	PASS	AC=1,0;AF=0.7,0.05;AN=2;DP=56;FS=0;set=variant-variant2-variant11-variant15-variant17-variant19-variant22-variant30-variant31-variant38	GT:DP:GQ:SB	0/1:9:23:0,2,4,3
chr1	160233345	.	C	A	66.22	PASS	AC=2;AF=0.929;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant29-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,2,2
chr1	160236470	.	T	A	1185.07	PASS	AC=1;AF=0.735;AN=2;DP=5551;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,107:189:99:2528,0,2018:44,38,57,50
chr1	160246485	.	C	T	575.18	PASS	AC=1;AF=0.672;AN=2;DP=1093;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:970,0,419:12,6,25,5
chr1	160247185	.	G	C	1043.96	PASS	AC=1;AF=0.672;AN=2;DP=2602;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:961,0,1567:25,31,15,26
chr1	160248443	.	T	C	662.61	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=5.457;FractionInformativeReads=1;MQ=60;MQRankSum=-0.415;QD=17.91;ReadPosRankSum=1.844;SOR=0.18;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,26:37:99:691,0,248:8,3,13,13
chr1	160251792	.	A	G	1653.38	PASS	AC=1;AF=0.735;AN=2;DP=4362;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,77:159:99:1876,0,2148:45,37,43,34
chr1	160254955	.	G	A	738.43	PASS	AC=1;AF=0.5;AN=2;DP=363;MQ=60;set=variant5-variant6-variant12-variant15-variant21-variant23	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:513,0,928:11,21,6,16
chr1	160260233	.	T	C	542.26	PASS	AC=1;AF=0.672;AN=2;DP=1683;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,20:64:99:462,0,1150:22,22,13,7
chr1	160262678	.	T	C	72.21	PASS	AC=1;AF=0.735;AN=2;DP=539;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:157,0,198:5,3,5,1
chr1	160263124	.	C	T	2020.88	PASS	AC=1;AF=0.735;AN=2;DP=6065;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,105:204:99:2698,0,2449:53,46,54,51
chr1	160265515	.	T	C	927.19	PASS	AC=1;AF=0.672;AN=2;DP=1370;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:678,0,904:24,6,18,6
chr1	160275434	.	A	G	6087.68	PASS	AC=2;AF=0.955;AN=2;DP=9082;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:6885,660,0:0,0,111,109
chr1	160281924	.	C	A	312.34	PASS	AC=1;AF=0.5;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant15-variant21-variant23	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:317,0,349:3,9,1,9
chr1	160302444	.	G	A	237.41	PASS	AC=1;AF=0.735;AN=2;DP=659;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:571,0,328:2,9,3,15
chr1	160303416	.	G	A	1927.33	PASS	AC=1;AF=0.712;AN=2;DP=5146;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,65:162:99:1555,0,2502:43,54,31,34
chr1	160309664	.	T	G	1318.41	PASS	AC=1;AF=0.735;AN=2;DP=3208;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,67:138:99:1370,0,1572:36,35,36,31
chr1	160313733	.	C	A	500.1	PASS	AC=1;AF=0.667;AN=2;DP=1902;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:868,0,934:17,23,15,24
chr1	160313744	.	GTT	GTTT,GT,G,GTTTTTT,GTTTTT	83.33	PASS	AC=0,1,0,0,0;AF=0.038,0.5,0.038,0.019,0.038;AN=2;DP=1218;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant7-filterInvariant8-variant10-variant11-variant12-variant13-filterInvariant15-variant16-variant17-variant19-variant20-variant24-variant25-variant27-filterInvariant28-variant29-variant31-variant33-variant34-variant43-variant44	GT:DP:GQ:SB	0/2:34:99:8,11,1,14
chr1	160318940	.	A	G	1101.86	PASS	AC=1;AF=0.7;AN=2;DP=2845;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,42:84:99:1050,0,1081:21,21,17,25
chr1	160319055	.	T	C	649.47	PASS	AC=1;AF=0.5;AN=2;DP=278;MQ=60;set=variant3-variant10-variant15-variant16-variant18-variant26-variant30-variant36-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:427,0,493:6,10,6,9
chr1	160319074	.	A	T	762.99	PASS	AC=1;AF=0.571;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant16-variant24-variant26-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:563,0,380:5,7,6,9
chr1	160320938	.	C	T	282.17	PASS	AC=1;AF=0.5;AN=2;DP=173;MQ=60;set=variant15-variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:310,0,837:21,7,10,3
chr1	160321065	.	A	G	1828.91	PASS	AC=1;AF=0.5;AN=2;DP=843;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant20-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,79:162:99:1857,0,2228:43,40,45,34
chr1	160321359	.	C	T	983.31	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:1012,0,932:11,20,17,16
chr1	160321499	.	C	T	980.41	PASS	AC=1;AF=0.5;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1009,0,1012:21,20,20,21
chr1	160323903	.	C	G	921.45	PASS	AC=1;AF=0.5;AN=2;DP=248;MQ=60;set=variant15-variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:950,0,793:20,11,22,13
chr1	160325921	.	T	C	140.46	PASS	AC=1;AF=0.5;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant15-variant20-variant24-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:258,0,315:8,3,5,2
chr1	160327820	.	G	C	644.24	PASS	AC=1;AF=0.5;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant15-variant20-variant24-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,22:64:99:618,0,1203:29,13,18,4
chr1	160328821	.	T	C	1294.19	PASS	AC=1;AF=0.5;AN=2;DP=294;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,63:124:99:1322,0,1424:24,37,31,32
chr1	160340198	.	A	C	34.68	PASS	AC=1;AF=0.5;AN=2;DP=69;FractionInformativeReads=1;set=variant5-variant7-variant15-variant22-variant24-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:172,0,102:0,4,5,0
chr1	160340212	.	A	C	32.1	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;set=variant5-variant7-variant15-variant22-variant24-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:163,0,382:2,5,5,0
chr1	160341876	.	G	A	1921.07	PASS	AC=1;AF=0.712;AN=2;DP=1915;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:687,0,804:17,18,13,16
chr1	160342015	.	T	G	366.22	PASS	AC=1;AF=0.743;AN=2;DP=1335;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:334,0,330:5,9,5,8
chr1	160342162	.	C	CTTAT	122.16	PASS	AC=1;AF=0.833;AN=2;DP=92;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant19-variant24-variant29-variant31-variant33-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,215:2,2,1,1
chr1	160370356	.	G	C	137.07	PASS	AC=2;AF=1;AN=2;DP=314;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:181,18,0:0,0,4,2
chr1	160393905	.	A	G	661.21	PASS	AC=1;AF=0.694;AN=2;DP=2512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:993,0,1197:29,12,24,17
chr1	160394155	.	CT	C	1846.39	PASS	AC=1;AF=0.5;AN=2;DP=476;MQ=60;set=variant10-variant15-variant23-variant25	GT:AD:DP:GQ:PL:SB	0/1:82,64:146:99:2127,0,2830:36,46,33,31
chr1	160395276	.	C	CT,CTT	352.49	PASS	AC=1,0;AF=0.676,0.014;AN=2;DP=1700;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:45:99:15,13,12,5
chr1	160397254	.	G	T	3597.32	PASS	AC=2;AF=1;AN=2;DP=5103;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3645,395,0:0,0,57,75
chr1	160397344	.	C	CATTATT,CATTATTATT,CATTATTATTATT,CATT	254.46	PASS	AC=0,0,0,1;AF=0.4,0.133,0.033,0.133;AN=2;DP=798;set=variant-variant2-variant3-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant38-variant40-variant42-variant44	GT:DP:GQ:SB	0/4:23:99:5,8,5,5
chr1	160455109	.	A	T	112.45	PASS	AC=2;AF=0.964;AN=2;DP=334;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:409,42,0:0,0,8,6
chr1	160456712	.	G	C	394.55	PASS	AC=1;AF=0.583;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant11-variant12-variant15-variant21-variant23-variant34-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:381,0,294:5,6,6,8
chr1	160458782	.	A	G	1743.56	PASS	AC=1;AF=0.793;AN=2;DP=4672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,60:135:99:1451,0,1855:45,30,36,24
chr1	160459909	.	C	A	1127.8	PASS	AC=1;AF=0.583;AN=2;DP=808;MQ=60;set=variant3-variant9-variant11-variant12-variant15-variant21-variant23-variant34-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,56:84:99:1344,0,673:15,13,31,25
chr1	160460099	.	T	A	116.76	PASS	AC=1;AF=0.591;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant11-variant12-variant15-variant21-variant23-variant34-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:168,0,347:2,8,0,5
chr1	160466356	.	A	G	172.58	PASS	AC=1;AF=0.577;AN=2;DP=201;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant11-variant12-variant15-variant21-variant23-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:345,0,339:1,10,2,9
chr1	160493178	.	AT	A,ATT	100.75	PASS	AC=1,0;AF=0.559,0.059;AN=2;DP=309;MQ=60;set=variant-variant3-variant9-variant15-variant17-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant40-variant41	GT:DP:GQ:SB	0/1:17:50:1,3,2,11
chr1	160511648	.	C	T	306.43	PASS	AC=1;AF=0.641;AN=2;DP=1290;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,31:49:99:763,0,349:12,6,18,13
chr1	160512224	.	G	A	9813.49	PASS	AC=2;AF=0.821;AN=2;DP=12640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,399:399:99:12562,1195,0:0,0,185,214
chr1	160512616	.	G	A	14591.2	PASS	AC=2;AF=0.821;AN=2;DP=17674;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,517:517:99:15707,1545,0:0,0,269,248
chr1	160512813	.	T	C	8329.3	PASS	AC=2;AF=0.849;AN=2;DP=10962;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,307:307:99:9491,919,0:0,0,128,179
chr1	160513173	.	G	A	2369.08	PASS	AC=1;AF=0.583;AN=2;DP=5068;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:137,95:232:99:2197,0,3657:77,60,54,41
chr1	160513183	.	A	G	9074.39	PASS	AC=2;AF=0.826;AN=2;DP=9505;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,242:242:99:8918,727,0:0,0,133,109
chr1	160513392	.	T	TTTATTATTA,TTTATTATTATTA,TTTTTTATTATTA	202.83	PASS	AC=0,1,0;AF=0.796,0.093,0.019;AN=2;DP=771;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:8:8:1,0,3,4
chr1	160513456	.	G	A	1958.51	PASS	AC=2;AF=0.814;AN=2;DP=2591;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,83:84:99:2703,241,0:1,0,61,22
chr1	160513626	.	G	A	10862.5	PASS	AC=2;AF=0.802;AN=2;DP=12955;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,369:369:99:11180,1105,0:0,0,196,173
chr1	160513935	.	CTTTTT	C,CT,CTT,CTTT,CTTTT	80.41	PASS	AC=0,0,2,0,0;AF=0.042,0.063,0.271,0.25,0.063;AN=2;DP=336;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant15-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	3/3:5:15:0,0,0,5
chr1	160514226	.	C	A	463.38	PASS	AC=1;AF=0.583;AN=2;DP=900;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:507,0,363:9,6,13,7
chr1	160514859	.	G	A	406.71	PASS	AC=2;AF=0.814;AN=2;DP=1211;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1089,99,0:0,0,20,13
chr1	160514955	.	T	C	660.48	PASS	AC=2;AF=0.826;AN=2;DP=1342;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1086,111,0:0,0,18,19
chr1	160514987	.	C	A	230.68	PASS	AC=1;AF=0.587;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:386,0,628:9,12,9,6
chr1	160515266	.	G	A	2230.33	PASS	AC=2;AF=0.821;AN=2;DP=3544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3356,332,0:0,0,52,59
chr1	160516049	.	A	G	66.22	PASS	AC=2;AF=0.829;AN=2;DP=553;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:420,39,0:0,0,9,4
chr1	160516262	.	A	G	535.63	PASS	AC=1;AF=0.583;AN=2;DP=1006;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:769,0,488:14,6,13,17
chr1	160516308	.	A	G	1147.09	PASS	AC=2;AF=0.814;AN=2;DP=2102;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1576,149,0:0,0,25,25
chr1	160516542	.	A	T	807.76	PASS	AC=1;AF=0.583;AN=2;DP=1315;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,39:63:99:1104,0,609:12,12,17,22
chr1	160516640	.	C	G	782.93	PASS	AC=1;AF=0.583;AN=2;DP=1405;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:786,0,1222:21,22,17,18
chr1	160516659	.	C	G	714.64	PASS	AC=1;AF=0.58;AN=2;DP=1519;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,31:73:99:721,0,1124:21,21,16,15
chr1	160517214	.	A	G	291.3	PASS	AC=1;AF=0.58;AN=2;DP=1017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,34:50:99:961,0,336:10,6,17,17
chr1	160517479	.	C	G	228.48	PASS	AC=1;AF=0.58;AN=2;DP=1407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,36:65:99:929,0,736:15,14,18,18
chr1	160517692	.	C	T	393.98	PASS	AC=1;AF=0.58;AN=2;DP=1755;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,49:91:99:1213,0,1062:15,27,24,25
chr1	160519812	.	C	CA	695.54	PASS	AC=1;AF=0.62;AN=2;DP=1636;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:1119,0,2745:13,27,10,20
chr1	160519815	.	C	CT	695.69	PASS	AC=1;AF=0.62;AN=2;DP=1497;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:1119,0,2744:13,27,9,20
chr1	160577890	.	T	G	229.75	PASS	AC=2;AF=0.826;AN=2;DP=613;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:582,57,0:0,0,13,6
chr1	160578004	.	T	A	140.91	PASS	AC=1;AF=0.6;AN=2;DP=903;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:568,0,828:18,16,15,9
chr1	160578141	.	C	T	341.09	PASS	AC=1;AF=0.6;AN=2;DP=1344;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:755,0,573:13,10,15,13
chr1	160578541	.	C	CA	1697.91	PASS	AC=2;AF=0.849;AN=2;DP=2309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2323,175,0:0,0,28,30
chr1	160580015	.	A	G	2130.04	PASS	AC=1;AF=0.641;AN=2;DP=4736;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,75:180:99:1904,0,2906:47,58,36,39
chr1	160582213	.	C	A	514.62	PASS	AC=1;AF=0.571;AN=2;DP=866;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:272,0,390:9,6,8,1
chr1	160582248	.	C	G	541.06	PASS	AC=1;AF=0.571;AN=2;DP=1291;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,15:46:99:364,0,784:16,15,10,5
chr1	160585554	.	C	G	1985.27	PASS	AC=2;AF=0.989;AN=2;DP=4157;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3159,318,0:0,0,56,50
chr1	160585706	.	C	T	153.68	PASS	AC=1;AF=0.8;AN=2;DP=1512;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:654,0,742:9,19,8,15
chr1	160604172	.	T	G	62.99	PASS	AC=2;AF=0.986;AN=2;DP=162;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;ReadPosRankSum=-0.922;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:162,12,0:0,0,3,1
chr1	160604863	.	A	T	314.96	PASS	AC=1;AF=0.75;AN=2;DP=622;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:271,0,214:2,5,1,7
chr1	160648549	.	C	T	251.9	PASS	AC=1;AF=0.841;AN=2;DP=517;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:219,0,192:5,3,6,2
chr1	160650792	.	GC	G	126.16	PASS	AC=2;AF=0.917;AN=2;DP=561;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:588,54,0:0,0,12,6
chr1	160650913	.	A	G	1536.21	PASS	AC=2;AF=0.989;AN=2;DP=2728;MQ=60;MQRankSum=-0.944;ReadPosRankSum=-0.087;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1880,158,0:0,0,37,16
chr1	160650938	.	C	T	831.01	PASS	AC=1;AF=0.583;AN=2;DP=907;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant10-variant13-variant15-variant18-variant21-variant22-variant27-variant32	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:975,0,1081:26,12,23,12
chr1	160653299	.	G	A	1514.93	PASS	AC=1;AF=0.579;AN=2;DP=1864;set=variant2-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant21-variant23-variant24-variant28-variant29-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,74:151:99:1727,0,2006:51,26,47,27
chr1	160653308	.	CT	C,CTT	973.88	PASS	AC=1,0;AF=0.455,0.045;AN=2;DP=5109;set=Intersection	GT:DP:GQ:SB	0/1:164:99:60,47,36,21
chr1	160654758	.	C	G	2157.72	PASS	AC=1;AF=0.591;AN=2;DP=1769;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant15-variant21-variant24-variant29-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,84:169:99:2163,0,2267:34,51,42,42
chr1	160654786	.	G	A	1837.38	PASS	AC=1;AF=0.556;AN=2;DP=2701;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant21-variant24-variant28-variant29-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:81,80:161:99:2197,0,2115:36,45,40,40
chr1	160681775	.	A	G	280.63	PASS	AC=2;AF=0.662;AN=2;DP=838;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:974,87,0:0,0,13,16
chr1	160681836	.	C	G	186.77	PASS	AC=2;AF=0.579;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant10-variant12-variant15-variant24-variant25-variant27-variant28-variant29-variant31-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:557,54,0:0,0,7,11
chr1	160717693	.	G	GT	185.1	PASS	AC=2;AF=0.833;AN=2;DP=229;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:159,15,0:0,0,5,0
chr1	160717872	.	T	G	2209.87	PASS	AC=2;AF=1;AN=2;DP=3005;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2583,258,0:0,0,48,38
chr1	160722064	.	A	G	978.7	PASS	AC=2;AF=1;AN=2;DP=1029;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:550,51,0:0,0,5,12
chr1	160723256	.	A	G	4997.43	PASS	AC=2;AF=0.763;AN=2;DP=5413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4665,431,0:0,0,52,92
chr1	160723517	.	A	G	918.41	PASS	AC=2;AF=0.763;AN=2;DP=1433;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1725,144,0:0,0,24,24
chr1	160723957	.	T	C	242.07	PASS	AC=1;AF=0.568;AN=2;DP=238;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant28-variant30-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:151,0,269:0,7,3,4
chr1	160724305	.	T	C	653.38	PASS	AC=2;AF=1;AN=2;DP=1456;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:928,81,0:0,0,18,9
chr1	160766179	.	C	CT	806.66	PASS	AC=1;AF=0.756;AN=2;DP=1345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:432,0,244:3,8,5,13
chr1	160786670	.	A	G	700.86	PASS	AC=1;AF=0.543;AN=2;DP=1199;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant21-variant22-variant24-variant27-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:1086,0,753:8,22,12,24
chr1	160789196	.	A	C	3821.02	PASS	AC=2;AF=1;AN=2;DP=5331;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4367,411,0:0,0,50,87
chr1	160789308	.	C	T	530.03	PASS	AC=1;AF=0.721;AN=2;DP=680;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:394,0,452:1,12,0,12
chr1	160793442	.	A	G	4013.83	PASS	AC=1;AF=0.625;AN=2;DP=4573;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,78:158:99:2071,0,1984:40,40,45,33
chr1	160793560	.	A	G	3171.71	PASS	AC=1;AF=0.621;AN=2;DP=4224;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,83:132:99:2158,0,1213:17,32,34,49
chr1	160793962	.	G	C	3134.57	PASS	AC=1;AF=0.625;AN=2;DP=3807;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,78:130:99:2113,0,1347:33,19,50,28
chr1	160797323	.	T	G	468.49	PASS	AC=1;AF=0.65;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:261,0,268:7,0,7,2
chr1	160797514	.	C	G	3906.92	PASS	AC=1;AF=0.633;AN=2;DP=3418;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,62:126:99:1377,0,1593:29,35,32,30
chr1	160797684	.	A	G	2191.43	PASS	AC=1;AF=0.633;AN=2;DP=1776;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:759,0,727:14,15,13,15
chr1	160798126	.	A	G	746.96	PASS	AC=1;AF=0.633;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:725,0,321:3,7,1,19
chr1	160800480	.	T	C	1573.1	PASS	AC=1;AF=0.645;AN=2;DP=2033;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,47:78:99:1159,0,742:14,17,21,26
chr1	160801046	.	C	G	3401.31	PASS	AC=1;AF=0.542;AN=2;DP=3886;MQ=60;set=variant2-variant4-variant7-variant9-variant13-variant14-variant15-variant19-variant27-variant35-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:199,196:395:99:5088,0,5322:82,117,78,118
chr1	160803802	.	A	G	495.81	PASS	AC=1;AF=0.702;AN=2;DP=3998;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,68:135:99:1726,0,1703:35,32,41,27
chr1	160809003	.	G	A	387.59	PASS	AC=1;AF=0.688;AN=2;DP=742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:389,0,496:2,13,0,11
chr1	160832212	.	A	G	142.7	PASS	AC=1;AF=0.529;AN=2;DP=572;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant13-variant14-variant15-variant19-variant25-variant27-variant31-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:564,0,531:15,5,14,7
chr1	160832646	.	A	G	778.14	PASS	AC=1;AF=0.533;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant13-variant14-variant15-variant19-variant25-variant27-variant31-variant35-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:728,0,944:14,21,11,17
chr1	160846284	.	T	G	310.29	PASS	AC=1;AF=0.75;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:523,0,266:7,5,13,9
chr1	160849030	.	T	A	70.45	PASS	AC=1;AF=0.75;AN=2;DP=817;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:216,0,430:11,3,6,1
chr1	160849060	.	G	A	193.9	PASS	AC=1;AF=0.75;AN=2;DP=1582;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:710,0,729:18,7,19,0
chr1	160849082	.	A	G	606.39	PASS	AC=1;AF=0.763;AN=2;DP=2491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:978,0,890:24,8,27,3
chr1	160849367	.	G	T	306.11	PASS	AC=1;AF=0.75;AN=2;DP=927;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:496,0,322:2,9,4,13
chr1	160849420	.	G	A	91.66	PASS	AC=1;AF=0.565;AN=2;DP=293;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:189,0,195:1,5,0,5
chr1	160850280	.	G	A	617.56	PASS	AC=1;AF=0.763;AN=2;DP=2170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:629,0,1120:28,11,18,8
chr1	160850936	.	T	C	436.59	PASS	AC=1;AF=0.763;AN=2;DP=7892;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,105:195:99:2588,0,2190:47,43,60,45
chr1	160851534	.	A	G	87.17	PASS	AC=2;AF=0.842;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:319,24,0:0,0,7,1
chr1	160851564	.	C	G	37.72	PASS	AC=1;AF=0.803;AN=2;DP=460;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,11:12:9:299,0,9:1,0,8,3
chr1	160851594	.	GAAAAAAA	G,GAAAAAA	82.47	PASS	AC=1,0;AF=0.744,0.024;AN=2;DP=1069;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:27:99:6,4,10,7
chr1	160851619	.	A	G	294.37	PASS	AC=1;AF=0.75;AN=2;DP=1753;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:919,0,547:13,7,17,8
chr1	160851826	.	A	T	493.18	PASS	AC=1;AF=0.75;AN=2;DP=3658;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,67:116:99:1722,0,1289:23,26,32,35
chr1	160851894	.	G	A	889.94	PASS	AC=1;AF=0.763;AN=2;DP=4325;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,69:131:99:1710,0,1452:32,30,41,28
chr1	160852022	.	C	T	807.5	PASS	AC=1;AF=0.75;AN=2;DP=6430;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,75:186:99:1731,0,2589:49,62,31,44
chr1	160852046	.	T	C	760.58	PASS	AC=1;AF=0.75;AN=2;DP=5402;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,62:155:99:1445,0,2209:44,49,25,37
chr1	160854526	.	G	A	136.21	PASS	AC=1;AF=0.763;AN=2;DP=874;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:474,0,609:15,6,14,3
chr1	160920813	.	A	G	985.22	PASS	AC=2;AF=1;AN=2;DP=5780;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:4800,494,0:0,0,88,77
chr1	161023252	.	TTCTCTCTCTCTCTCTCTCTCTCTC	TTCTCTCTCTC,TTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTCTC,TTC,TTCTCTCTCTCTCTC,T,TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	430.25	PASS	AC=0,0,0,0,1,0,0,0,0,0,0,0,0;AF=0.018,0.179,0.071,0.071,0.054,0.054,0.054,0.036,0.071,0.018,0.036,0.018,0.036;AN=2;DP=941;set=variant4-variant5-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant32-filterInvariant33-variant35-variant36-variant37-variant40-variant43-variant44	GT:DP:GQ:SB	0/5:13:99:1,6,0,6
chr1	161068119	.	C	T	214.23	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant15-variant29-variant33	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:242,0,221:6,1,7,2
chr1	161068240	.	G	A	790.1	PASS	AC=1;AF=0.63;AN=2;DP=2222;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,51:89:99:1355,0,1057:26,12,33,18
chr1	161070042	.	C	T	1376.83	PASS	AC=1;AF=0.5;AN=2;DP=619;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant22-variant37	GT:AD:DP:GQ:PL:SB	0/1:83,86:169:99:2125,0,2289:36,47,40,46
chr1	161088583	.	T	G	1444.71	PASS	AC=1;AF=0.5;AN=2;DP=891;MQ=60;set=variant7-variant9-variant15-variant27-variant29-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:71,60:131:99:1594,0,1704:38,33,32,28
chr1	161088695	.	A	C	1692.65	PASS	AC=1;AF=0.5;AN=2;DP=569;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant13-variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:62,69:131:99:1680,0,1618:26,36,29,40
chr1	161089450	.	C	CTAAACT	923.64	PASS	AC=2;AF=0.63;AN=2;DP=1765;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2886,197,0:0,0,27,35
chr1	161090591	.	A	C	214.51	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=190;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:70,22:92:99:243,0,1343:17,53,19,3
chr1	161090597	.	A	C	132.59	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=380;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:65,26:91:99:292,0,1281:11,54,26,0
chr1	161090601	.	T	C	89.06	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=90;FS=65.974;FractionInformativeReads=0.978;MQ=60;MQRankSum=-0.614;QD=0.99;ReadPosRankSum=-3.313;SOR=5.13;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:76,12:88:99:117,0,4023:17,59,12,0
chr1	161091814	.	TAA	TAAA,T,TA	45.22	PASS	AC=2,0,0;AF=0.4,0.05,0.1;AN=2;DP=137;set=variant-variant3-variant7-variant8-variant14-variant15-variant26-variant31-variant32-variant33	GT:DP:GQ:SB	1/1:6:7:0,1,0,5
chr1	161092761	.	A	G	1200.78	PASS	AC=1;AF=0.5;AN=2;DP=875;MQ=60;set=variant7-variant9-variant15-variant27-variant29-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:67,63:130:99:1532,0,1745:37,30,33,30
chr1	161094190	.	A	G	1742.78	PASS	AC=1;AF=0.5;AN=2;DP=1180;MQ=60;set=variant7-variant9-variant15-variant27-variant29-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:121,97:218:99:2317,0,3106:50,71,38,59
chr1	161094834	.	C	T	160.4	PASS	AC=2;AF=0.635;AN=2;DP=517;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:992,87,0:0,0,20,9
chr1	161101890	.	A	C	144.11	PASS	AC=2;AF=0.659;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant13-variant14-variant15-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:342,30,0:0,0,5,5
chr1	161126641	.	T	C	722.6	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant15-variant27-variant29-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:11,27:38:99:751,0,254:8,3,18,9
chr1	161126705	.	A	G	1650.64	PASS	AC=1;AF=0.5;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant15-variant27-variant29-variant33	GT:AD:DP:GQ:PL:SB	0/1:42,64:106:99:1679,0,844:22,20,39,25
chr1	161126975	.	C	G	1116.56	PASS	AC=2;AF=0.63;AN=2;DP=2389;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3814,374,0:0,0,66,59
chr1	161127695	.	GA	G	32.33	PASS	AC=1;AF=0.5;AN=2;DP=121;MQ=60;set=filterInvariant12-variant15-variant27-variant29-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:236,0,151:7,1,8,3
chr1	161135559	.	A	G	62.99	PASS	AC=2;AF=0.844;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant11-variant13-variant15-variant18-variant21-variant22-variant24-variant25-variant29-variant32-variant33-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:66,6,0:0,0,2,0
chr1	161136224	.	C	A	734.67	PASS	AC=2;AF=0.63;AN=2;DP=1971;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2556,256,0:0,0,56,30
chr1	161136843	.	C	G	1201.41	PASS	AC=2;AF=0.63;AN=2;DP=3164;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4104,390,0:0,0,54,77
chr1	161138135	.	C	T	581.37	PASS	AC=1;AF=0.5;AN=2;DP=224;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:59,50:109:99:1278,0,1567:37,22,32,18
chr1	161139032	.	C	T	963.29	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=0.748;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.165;QD=9.63;ReadPosRankSum=-0.712;SOR=0.777;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:57,42:99:99:992,0,1566:27,30,19,23
chr1	161139738	.	G	A	1020.15	PASS	AC=1;AF=0.5;AN=2;DP=322;MQ=60;set=variant15-variant27-variant29-variant33	GT:AD:DP:GQ:PL:SB	0/1:55,46:101:99:1048,0,1360:20,35,18,28
chr1	161143312	.	T	C	539.89	PASS	AC=1;AF=0.568;AN=2;DP=635;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant13-variant14-variant15-variant18-variant21-variant22-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:380,0,609:13,7,10,2
chr1	161143801	.	G	A	3042.98	PASS	AC=1;AF=0.5;AN=2;DP=993;FractionInformativeReads=1;MQ=60;set=variant15-variant27-variant29-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:111,124:235:99:3071,0,2822:44,67,57,67
chr1	161143969	.	A	G	241.2	PASS	AC=2;AF=0.63;AN=2;DP=767;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:738,57,0:0,0,1,18
chr1	161145005	.	C	T	1028.51	PASS	AC=1;AF=0.5;AN=2;DP=763;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant15-variant27-variant29-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:47,49:96:99:1157,0,1020:22,25,22,27
chr1	161160460	.	T	TCA	646.34	PASS	AC=1;AF=0.595;AN=2;DP=1617;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant29-variant32-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,25:92:99:658,0,2246:32,35,10,15
chr1	161160640	.	C	G	280.52	PASS	AC=1;AF=0.5;AN=2;DP=167;MQ=60;set=variant7-variant9-variant15-variant27-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:483,0,537:8,10,8,8
chr1	161161284	.	G	C	1788.86	PASS	AC=1;AF=0.571;AN=2;DP=996;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant15-variant27-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:97,78:175:99:1911,0,2449:48,49,33,45
chr1	161162173	.	G	A	714	PASS	AC=2;AF=0.708;AN=2;DP=2080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2382,237,0:0,0,30,49
chr1	161162227	.	C	T	315.79	PASS	AC=1;AF=0.5;AN=2;DP=80;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:612,0,359:5,10,4,15
chr1	161163037	.	T	C	1040.6	PASS	AC=2;AF=0.708;AN=2;DP=3163;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3447,350,0:0,0,60,57
chr1	161163633	.	C	T	1117.85	PASS	AC=2;AF=0.722;AN=2;DP=3829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4225,396,0:0,0,67,65
chr1	161167698	.	T	G	602.47	PASS	AC=2;AF=0.722;AN=2;DP=1332;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1553,120,0:0,0,34,6
chr1	161168189	.	C	T	1866.57	PASS	AC=1;AF=0.5;AN=2;DP=1417;MQ=60;set=variant13-variant14-variant15-variant18-variant22-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:128,151:279:99:3513,0,3222:65,63,76,75
chr1	161172233	.	C	A	2181.16	PASS	AC=1;AF=0.571;AN=2;DP=1103;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant15-variant27-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:92,68:160:99:1471,0,2308:48,44,33,35
chr1	161176137	.	A	G	2268.13	PASS	AC=2;AF=0.722;AN=2;DP=5049;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5142,510,0:0,0,101,69
chr1	161179877	.	G	A	1418.24	PASS	AC=1;AF=0.65;AN=2;DP=1894;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant15-variant19-variant21-variant24-variant25-variant27-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,55:96:99:1558,0,1037:21,20,32,23
chr1	161182208	.	C	G	1624.11	PASS	AC=1;AF=0.5;AN=2;DP=1294;MQ=60;set=variant13-variant14-variant15-variant18-variant22-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:105,99:204:99:2443,0,2428:55,50,51,48
chr1	161184059	.	CTGTGTGTGTG	CTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTG,C,CTGTGTGTGTGTGTGTGTGTG	260.2	PASS	AC=1,0,0,0,1,0,0;AF=0.205,0.205,0.026,0.154,0.077,0.013,0.013;AN=2;DP=1949;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/5:35:99:1,1,9,24
chr1	161188893	.	T	G	117.33	PASS	AC=1;AF=0.5;AN=2;DP=346;MQ=60;set=variant13-variant14-variant15-variant18-variant22-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:36,16:52:99:391,0,1005:13,23,8,8
chr1	161188936	.	T	C	781.24	PASS	AC=1;AF=0.571;AN=2;DP=637;MQ=60;set=variant4-variant11-variant13-variant15-variant19-variant21-variant22-variant24-variant25-variant31-variant35-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:446,0,667:10,12,10,10
chr1	161191228	.	G	A	61.62	PASS	AC=2;AF=0.605;AN=2;DP=318;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant11-variant13-variant15-variant19-variant21-variant22-variant24-variant25-variant27-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:460,39,0:0,0,10,3
chr1	161191339	.	C	T	848.7	PASS	AC=1;AF=0.5;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant15-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:58,48:106:99:877,0,1392:35,23,24,24
chr1	161191450	.	CTTTTTTTTTTTTT	CTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTT,CTTT,CTTTTTTT,CTTTTTTTTTTTT,C,CTTTTTTTT	336.83	PASS	AC=1,0,0,0,1,0,0,0;AF=0.405,0.024,0.024,0.024,0.071,0.048,0.024,0.024;AN=2;DP=722;set=variant-variant2-variant4-variant7-variant10-variant11-variant13-variant15-variant19-variant21-variant22-variant24-variant25-variant27-filterInvariant29-variant33-variant35-variant38-variant39-variant40-variant43	GT:DP:GQ:SB	1/5:24:97:0,0,7,17
chr1	161191461	.	T	C	243.14	PASS	AC=1;AF=0.5;AN=2;DP=101;MQ=60;set=variant15-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:271,0,165:1,8,6,10
chr1	161191462	.	T	C	31.25	PASS	AC=1;AF=0.5;AN=2;DP=432;set=filterInvariant-variant4-variant11-variant13-filterInvariant15-variant19-variant21-variant22-variant24-variant25-variant35-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:71:71,0,343:7,12,0,6
chr1	161191522	.	A	G	59.7	PASS	AC=2;AF=0.694;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant11-variant13-variant15-variant19-variant21-variant22-variant24-variant25-variant27-variant31-variant33-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:682,51,0:0,0,3,14
chr1	161192316	.	G	A	375	PASS	AC=1;AF=0.5;AN=2;DP=244;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant27-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:953,0,902:12,20,13,23
chr1	161192845	.	CCACACACACACACA	CCA,CCACACACA,CCACACACACACA,C,CCACACACACA,CCACA,CCACACACACACACACA,CCACACACACACACACACA,CCACACACACACACACACACACA,CCACACA	256.52	PASS	AC=0,0,0,0,0,2,0,0,0,0;AF=0.174,0.233,0.058,0.023,0.012,0.093,0.035,0.012,0.012,0.012;AN=2;DP=3731;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	6/6:71:99:0,1,29,41
chr1	161195709	.	CTTTTTTTTT	CTT,CT,CTTTTTTTT,CTTTT,C,CTTT	97.92	PASS	AC=1,1,0,0,0,0;AF=0.452,0.167,0.024,0.095,0.024,0.024;AN=2;DP=169;set=variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	2/1:9:76:0,0,8,1
chr1	161196166	.	A	C	730.41	PASS	AC=2;AF=0.587;AN=2;DP=1384;MQ=60;set=variant-variant4-variant7-variant8-variant11-variant13-variant14-variant15-variant19-variant21-variant22-variant24-variant25-variant27-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2912,234,0:0,0,41,37
chr1	161200487	.	C	A	353.21	PASS	AC=2;AF=0.671;AN=2;DP=1868;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1570,129,0:0,0,29,14
chr1	161201350	.	G	T	73.32	PASS	AC=2;AF=0.587;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant8-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:765,54,0:0,0,3,15
chr1	161201352	.	G	A	73.32	PASS	AC=2;AF=0.587;AN=2;DP=261;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant8-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:54:765,54,0:0,0,2,14
chr1	161202605	.	G	A	1953.98	PASS	AC=2;AF=0.583;AN=2;DP=3273;MQ=60;set=variant-variant4-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,157:159:99:4599,426,0:1,1,84,73
chr1	161204906	.	G	A	251.83	PASS	AC=1;AF=0.604;AN=2;DP=603;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant21-variant22-variant23-variant27-variant28-variant29-variant33-variant34-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:434,0,441:11,8,10,8
chr1	161205046	.	GTTTTTT	GT,GTTT,G,GTTTCTTTTTTT	294.67	PASS	AC=0,1,0,0;AF=0.409,0.045,0.182,0.045;AN=2;DP=212;MQ=60;set=variant-variant4-variant15-variant16-variant25-variant35-variant36-variant38-variant39-variant40-variant43	GT:DP:GQ:SB	0/2:11:91:4,3,1,3
chr1	161205053	.	T	C	63.09	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=2.398;FractionInformativeReads=0.706;MQ=60;MQRankSum=-0.289;QD=3.71;ReadPosRankSum=0.825;SOR=1.609;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:91:91,0,229:4,4,1,3
chr1	161205898	.	G	T	730.13	PASS	AC=1;AF=0.5;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant14-variant15-variant22-variant27-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:810,0,722:4,18,7,21
chr1	161209164	.	G	A	118.96	PASS	AC=1;AF=0.556;AN=2;DP=59;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant14-variant15-variant27-variant33-variant34-variant39	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:73:76,0,73:1,2,2,1
chr1	161228800	.	C	T	467.02	PASS	AC=1;AF=0.588;AN=2;DP=968;MQ=60;set=variant-variant4-variant5-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant31-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:28,41:69:99:1221,0,871:7,21,11,30
chr1	161228843	.	G	A	360.66	PASS	AC=1;AF=0.5;AN=2;DP=218;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant15-variant27-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:460,0,684:9,15,5,12
chr1	161253657	.	C	T	350.51	PASS	AC=1;AF=0.638;AN=2;DP=1009;MQ=60;set=variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:698,0,359:3,10,4,18
chr1	161254280	.	G	C	1309.32	PASS	AC=1;AF=0.526;AN=2;DP=1276;MQ=60;set=variant3-variant9-variant10-variant13-variant15-variant17-variant21-variant24-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,26:84:99:559,0,1592:26,32,10,16
chr1	161254634	.	G	C	868.09	PASS	AC=1;AF=0.526;AN=2;DP=1325;MQ=60;set=variant3-variant9-variant10-variant13-variant15-variant17-variant21-variant24-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:891,0,1171:22,26,17,19
chr1	161274448	.	G	C	52.74	PASS	AC=1;AF=0.722;AN=2;DP=33;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant25-variant31-variant33-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:33:81,0,33:1,0,1,1
chr1	161274755	.	T	TTCTC	298.36	PASS	AC=1;AF=0.5;AN=2;DP=245;MQ=60;set=variant3-variant13-variant15-variant17-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:328,0,701:8,5,4,5
chr1	161276376	.	G	A	406.42	PASS	AC=1;AF=0.56;AN=2;DP=1290;MQ=60;set=variant3-variant9-variant11-variant12-variant13-variant15-variant17-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:711,0,1124:16,21,9,18
chr1	161276434	.	A	G	1030.4	PASS	AC=2;AF=1;AN=2;DP=1742;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1961,162,0:0,0,36,18
chr1	161276804	.	CAAAAAAAAAA	C,CAAAAAA,CAAAAAAAA,CAAAAAAA	408.21	PASS	AC=1,0,0,0;AF=0.083,0.167,0.083,0.208;AN=2;DP=138;set=variant-variant3-variant11-variant15-variant23-variant24-variant25-variant31-variant32-variant36-variant38-variant40	GT:DP:GQ:SB	0/1:13:99:3,1,8,1
chr1	161279882	.	A	G	123.15	PASS	AC=1;AF=0.603;AN=2;DP=457;MQ=60;set=variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:422,0,198:4,2,8,4
chr1	161332091	.	CT	C	500.91	PASS	AC=1;AF=0.5;AN=2;DP=849;set=variant3-filterInvariant5-filterInvariant10-variant11-variant13-variant15-variant17-variant19-variant21-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:323,0,311:14,6,15,3
chr1	161475875	.	G	A	1209.02	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1237,0,1128:19,27,17,34
chr1	161479745	.	A	G	3428.86	PASS	AC=2;AF=0.625;AN=2;DP=10311;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,330:330:99:10091,989,0:0,0,172,158
chr1	161494311	.	G	C	3117.52	PASS	AC=2;AF=0.826;AN=2;DP=3970;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3348,308,0:0,0,41,62
chr1	161495477	.	A	T	10864.1	PASS	AC=2;AF=0.707;AN=2;DP=21389;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,628:629:99:18423,1865,0:0,1,291,337
chr1	161495885	.	T	C	2487.4	PASS	AC=2;AF=0.821;AN=2;DP=7349;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:6187,561,0:0,0,85,102
chr1	161496530	.	C	G	74.13	PASS	AC=2;AF=0.54;AN=2;DP=619;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:685,54,0:0,0,5,13
chr1	161518172	.	C	T	854.56	PASS	AC=1;AF=0.5;AN=2;DP=2580;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,88:113:99:2470,0,431:12,13,66,22
chr1	161518214	.	T	C	221.23	PASS	AC=1;AF=0.5;AN=2;DP=3901;set=filterInvariant4-filterInvariant5-variant9-filterInvariant12-variant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant24-filterInvariant26-variant30-filterInvariant34-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:203,34:237:99:265,0,5665:136,67,19,15
chr1	161518336	.	C	T	756.64	PASS	AC=1;AF=0.5;AN=2;DP=9926;set=filterInvariant4-filterInvariant5-variant9-filterInvariant11-filterInvariant12-variant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant24-filterInvariant26-variant30-filterInvariant31-filterInvariant32-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:405,76:481:99:676,0,10750:198,207,43,33
chr1	161559256	.	C	T	528.87	PASS	AC=1;AF=0.531;AN=2;DP=454;FractionInformativeReads=1;set=variant4-variant5-variant8-variant9-variant11-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant30-variant31-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:333,0,346:7,3,8,3
chr1	161559327	.	A	G	126.28	PASS	AC=2;AF=0.867;AN=2;DP=2239;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2435,197,0:0,0,50,16
chr1	161559571	.	C	T	939.59	PASS	AC=1;AF=0.531;AN=2;DP=1316;set=variant4-variant5-variant8-variant9-variant11-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant30-variant31-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,48:100:99:1311,0,1230:24,28,19,29
chr1	161561236	.	C	T	459.58	PASS	AC=2;AF=0.727;AN=2;DP=1038;set=variant-variant5-variant6-variant7-variant8-variant9-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant27-variant31-variant32-variant33-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1362,122,0:0,0,7,34
chr1	161561287	.	A	G	163.06	PASS	AC=2;AF=0.987;AN=2;DP=410;FS=0;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:353,27,0:0,0,0,9
chr1	161565324	.	C	T	1306.35	PASS	AC=2;AF=0.811;AN=2;DP=3675;set=variant-filterInvariant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4061,374,0:0,0,82,43
chr1	161565479	.	G	A	1591.6	PASS	AC=1;AF=0.579;AN=2;DP=2234;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant30-variant31-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,77:158:99:2019,0,1987:32,49,21,56
chr1	161576227	.	C	G	494.82	PASS	AC=1;AF=0.817;AN=2;DP=1750;set=filterInvariant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant36-variant37-variant38-variant39-filterInvariant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:787,0,553:17,5,28,2
chr1	161577204	.	G	T	4843.08	PASS	AC=1;AF=0.594;AN=2;DP=3297;set=variant-variant2-variant5-variant8-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,135:281:99:3922,0,3877:43,103,31,104
chr1	161577669	.	G	A	1767.52	PASS	AC=1;AF=0.793;AN=2;DP=4283;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,70:158:99:1769,0,2298:44,44,34,36
chr1	161593122	.	C	T	2356.14	PASS	AC=1;AF=0.636;AN=2;DP=4176;set=variant4-variant5-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant30-variant31-variant33-variant34-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,122:224:99:3448,0,2622:69,33,88,34
chr1	161593349	.	C	T	3834.99	PASS	AC=2;AF=1;AN=2;DP=3690;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4775,386,0:0,0,24,105
chr1	161593397	.	C	G	2162.19	PASS	AC=2;AF=1;AN=2;DP=2186;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3047,229,0:0,0,25,51
chr1	161593468	.	A	G	1619.72	PASS	AC=2;AF=1;AN=2;DP=2795;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2379,242,0:0,0,37,44
chr1	161593551	.	T	G	1475.74	PASS	AC=2;AF=1;AN=2;DP=1690;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1858,135,0:0,0,3,42
chr1	161593571	.	A	G	1255.78	PASS	AC=2;AF=1;AN=2;DP=1473;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1895,135,0:0,0,5,40
chr1	161594226	.	C	T	540.2	PASS	AC=2;AF=1;AN=2;DP=1062;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:694,69,0:0,0,16,7
chr1	161594246	.	G	T	697.63	PASS	AC=2;AF=1;AN=2;DP=1483;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:960,90,0:0,0,21,9
chr1	161594525	.	G	C	2990.38	PASS	AC=2;AF=1;AN=2;DP=2956;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:4649,313,0:0,0,37,67
chr1	161594526	.	T	G	2990.38	PASS	AC=2;AF=1;AN=2;DP=2856;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:4649,313,0:0,0,37,66
chr1	161594561	.	C	G	1263.63	PASS	AC=2;AF=0.988;AN=2;DP=1854;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1874,192,0:0,0,19,45
chr1	161596283	.	G	A	1419.83	PASS	AC=2;AF=0.966;AN=2;DP=2667;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2023,173,0:0,0,9,49
chr1	161599693	.	T	C	1257.96	PASS	AC=2;AF=0.987;AN=2;DP=3367;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,56:58:99:1655,118,0:1,1,32,24
chr1	161600287	.	AT	A	784.17	PASS	AC=1;AF=0.603;AN=2;DP=1191;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:690,0,689:6,19,8,17
chr1	161600345	.	C	T	69.04	PASS	AC=1;AF=0.662;AN=2;DP=343;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant10-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant20-variant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:176,0,153:0,6,0,8
chr1	161600832	.	G	T	765.63	PASS	AC=1;AF=0.776;AN=2;DP=1157;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:1091,0,679:20,4,28,4
chr1	161600995	.	C	T	2420.66	PASS	AC=1;AF=0.63;AN=2;DP=4871;set=variant4-variant5-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,105:254:99:2510,0,3868:65,84,50,55
chr1	161601118	.	G	C	884.48	PASS	AC=1;AF=0.62;AN=2;DP=1441;FractionInformativeReads=1;set=variant4-variant5-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:667,0,752:5,19,6,15
chr1	161601133	.	T	C	1411.26	PASS	AC=2;AF=1;AN=2;DP=1785;FS=0;MQRankSum=-1.264;ReadPosRankSum=0.234;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1415,99,0:0,0,6,27
chr1	161641384	.	G	A	701.08	PASS	AC=1;AF=0.5;AN=2;DP=1198;FractionInformativeReads=1;set=variant-variant5-variant8-variant14-variant15-variant17-variant18-variant20-variant23-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,58:100:99:1709,0,1072:19,23,24,34
chr1	161643044	.	A	G	279.28	PASS	AC=1;AF=0.667;AN=2;DP=371;FractionInformativeReads=1;set=variant7-variant9-filterInvariant12-filterInvariant15-filterInvariant18-filterInvariant19-filterInvariant22-filterInvariant25-filterInvariant30-variant31-filterInvariant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:195,0,231:3,5,5,3
chr1	161643327	.	C	G	83.47	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;set=filterInvariant8-filterInvariant15-variant20-filterInvariant23	GT:AD:DP:GQ:PL:SB	0/1:46,9:55:99:101,0,1112:23,23,6,3
chr1	161643663	.	C	T	188.78	PASS	AC=2;AF=0.833;AN=2;DP=176;FractionInformativeReads=1;set=variant-variant8-variant14-variant15-filterInvariant16-variant18-variant20-variant23-variant33-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,15:16:38:439,38,0:0,1,6,9
chr1	161645259	.	T	G	227.59	PASS	AC=2;AF=0.872;AN=2;DP=1391;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:948,78,0:0,0,6,20
chr1	161647533	.	A	G	343.73	PASS	AC=1;AF=0.793;AN=2;DP=2820;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:724,0,904:17,16,16,13
chr1	161676904	.	T	C	8677.85	PASS	AC=2;AF=0.756;AN=2;DP=13474;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,430:430:99:12604,1286,0:0,0,229,201
chr1	161676970	.	A	G	10093.8	PASS	AC=2;AF=0.756;AN=2;DP=14889;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,441:441:99:13701,1321,0:0,0,196,245
chr1	161677350	.	A	G	196.77	PASS	AC=2;AF=0.786;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:309,27,0:0,0,2,7
chr1	161680258	.	G	A	4606.22	PASS	AC=2;AF=0.732;AN=2;DP=6063;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5591,510,0:0,0,85,85
chr1	161680868	.	T	C	254.9	PASS	AC=2;AF=0.676;AN=2;DP=728;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:672,69,0:0,0,14,9
chr1	161683136	.	G	A	9395.66	PASS	AC=2;AF=0.681;AN=2;DP=9513;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,290:292:99:9382,824,0:1,1,174,116
chr1	161691366	.	C	A	349.59	PASS	AC=2;AF=0.875;AN=2;DP=725;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:527,57,0:0,0,11,8
chr1	161691433	.	C	T	610.68	PASS	AC=2;AF=0.762;AN=2;DP=1212;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:728,75,0:0,0,14,11
chr1	161695381	.	G	C	61.77	PASS	AC=2;AF=0.731;AN=2;DP=168;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant33-variant34-variant35-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:370,36,0:0,0,8,4
chr1	161695639	.	G	T	3137.09	PASS	AC=2;AF=0.852;AN=2;DP=5681;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5221,498,0:0,0,95,72
chr1	161696088	.	T	C	5370.74	PASS	AC=2;AF=0.768;AN=2;DP=8882;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:7737,737,0:0,0,125,121
chr1	161696782	.	G	C	1298.61	PASS	AC=2;AF=0.662;AN=2;DP=2451;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2616,261,0:0,0,32,55
chr1	161696998	.	C	G	488.36	PASS	AC=2;AF=0.662;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:541,45,0:0,0,11,4
chr1	161698011	.	CGGGGG	CG,CGGG,C,CGG,CGGGG	7611.69	PASS	AC=2,0,0,0,0;AF=0.607,0.036,0.06,0.036,0.012;AN=2;DP=4926;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:163:99:0,0,53,110
chr1	161698019	.	G	C	7619.45	PASS	AC=2;AF=0.676;AN=2;DP=4104;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:6855,490,0:0,0,53,110
chr1	161721351	.	A	G	959.06	PASS	AC=1;AF=0.732;AN=2;DP=840;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:409,0,587:15,4,11,5
chr1	161721707	.	C	T	4371.28	PASS	AC=1;AF=0.659;AN=2;DP=3155;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant34-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,73:154:99:1742,0,1965:41,40,38,35
chr1	161722272	.	C	A	620.69	PASS	AC=1;AF=0.6;AN=2;DP=2026;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:811,0,1214:19,30,16,20
chr1	161722779	.	C	CAAA,CAA	848.2	PASS	AC=2,0;AF=0.795,0.08;AN=2;DP=1237;set=Intersection	GT:DP:GQ:SB	1/1:24:82:0,0,23,1
chr1	161736035	.	A	G	1732.16	PASS	AC=2;AF=0.875;AN=2;DP=3231;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2909,300,0:0,0,49,51
chr1	161751741	.	A	G	4040.09	PASS	AC=1;AF=0.568;AN=2;DP=2627;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant15-variant17-variant20-variant21-variant22-variant23-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,66:125:99:1586,0,1346:29,30,36,30
chr1	161822959	.	C	T	85.2	PASS	AC=2;AF=0.963;AN=2;DP=266;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:439,39,0:0,0,8,5
chr1	161823011	.	T	A	509.88	PASS	AC=2;AF=0.707;AN=2;DP=1051;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1622,153,0:0,0,33,18
chr1	161823197	.	G	GT	2657.26	PASS	AC=2;AF=0.738;AN=2;DP=2864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3597,307,0:0,0,37,65
chr1	161833233	.	G	A	105.95	PASS	AC=1;AF=0.593;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:313,0,317:2,9,2,9
chr1	161928327	.	A	G	2859.41	PASS	AC=2;AF=0.798;AN=2;DP=4040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3643,374,0:0,0,60,65
chr1	161928568	.	G	A	785.78	PASS	AC=2;AF=0.798;AN=2;DP=982;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1163,104,0:0,0,22,13
chr1	161929235	.	T	C	234.82	PASS	AC=2;AF=0.917;AN=2;DP=375;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:507,39,0:0,0,3,10
chr1	161929459	.	CAAAAAAA	CAA,CA,C,CAAA,CAAAAA,CAAAA	1635.02	PASS	AC=0,1,0,1,0,0;AF=0.355,0.211,0.026,0.079,0.013,0.013;AN=2;DP=3047;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/4:47:99:0,2,41,4
chr1	161929761	.	C	T	10036.9	PASS	AC=2;AF=0.875;AN=2;DP=11887;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,338:338:99:10034,1012,0:0,0,173,165
chr1	161929878	.	TAA	TA,TAAA,T	6397.56	PASS	AC=2,0,0;AF=0.761,0.068,0.011;AN=2;DP=11482;set=Intersection	GT:DP:GQ:SB	1/1:208:99:9,8,91,100
chr1	161930476	.	C	T	1413.35	PASS	AC=2;AF=0.78;AN=2;DP=2048;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1884,188,0:0,0,28,35
chr1	161930730	.	A	G	1375.88	PASS	AC=1;AF=0.596;AN=2;DP=1196;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:534,0,546:14,7,12,8
chr1	161930908	.	G	A	2855.39	PASS	AC=2;AF=0.786;AN=2;DP=3677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3113,310,0:0,0,54,50
chr1	161930954	.	G	A	2670.51	PASS	AC=1;AF=0.571;AN=2;DP=1777;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant15-variant17-variant20-variant21-variant22-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1085,0,1269:22,26,25,20
chr1	161931167	.	A	G	2005.96	PASS	AC=2;AF=0.786;AN=2;DP=2607;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2256,186,0:0,0,39,23
chr1	161931260	.	T	C	4280.85	PASS	AC=1;AF=0.596;AN=2;DP=3725;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,89:176:99:2136,0,2071:54,33,50,39
chr1	161931361	.	ATT	AT,A,ATTT	447.62	PASS	AC=1,0,0;AF=0.419,0.081,0.012;AN=2;DP=7293;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:185:99:61,59,31,34
chr1	161931538	.	G	T	2952.11	PASS	AC=2;AF=0.786;AN=2;DP=3534;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3369,268,0:0,0,34,55
chr1	161931562	.	G	A	454.94	PASS	AC=1;AF=0.565;AN=2;DP=2198;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,43:80:99:1269,0,977:19,18,15,28
chr1	161931628	.	G	C	2740.83	PASS	AC=2;AF=0.786;AN=2;DP=2241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2439,195,0:0,0,38,27
chr1	161931802	.	A	G	12726.2	PASS	AC=2;AF=0.786;AN=2;DP=13657;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,432:433:99:13323,1253,0:1,0,249,183
chr1	161931915	.	AT	A	10987.3	PASS	AC=2;AF=0.786;AN=2;DP=13811;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,365:367:99:10228,1063,0:1,1,173,192
chr1	161932193	.	C	T	789.47	PASS	AC=1;AF=0.565;AN=2;DP=2612;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,42:94:99:1142,0,1651:25,27,22,20
chr1	161932324	.	A	G	6734.58	PASS	AC=2;AF=0.786;AN=2;DP=7709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:6880,685,0:0,0,120,109
chr1	161933048	.	G	A	14720.1	PASS	AC=2;AF=0.786;AN=2;DP=14218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,402:402:99:17529,1227,0:0,0,179,223
chr1	161933066	.	G	C	14283.5	PASS	AC=2;AF=0.83;AN=2;DP=14017;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,371:371:99:16257,1125,0:0,0,170,201
chr1	161953004	.	T	TA,TAA	1548.05	PASS	AC=1,0;AF=0.531,0.031;AN=2;DP=1977;MQ=60;set=variant5-variant10-variant14-variant15-variant20-variant21-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:168:99:49,34,55,30
chr1	161976234	.	A	G	2940.75	PASS	AC=2;AF=0.821;AN=2;DP=5027;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4438,448,0:0,0,77,73
chr1	161976272	.	G	GA	2556.64	PASS	AC=2;AF=0.932;AN=2;DP=5464;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:9,122:131:99:3111,206,0:5,4,54,68
chr1	162313518	.	A	G	1043.35	PASS	AC=2;AF=0.591;AN=2;DP=2262;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant21-variant23-variant25-variant27-variant29-variant33-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4076,395,0:0,0,82,50
chr1	162313597	.	T	C	4452.38	PASS	AC=2;AF=0.989;AN=2;DP=7655;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,200:201:99:6064,591,0:1,0,104,96
chr1	162313735	.	C	T	872.61	PASS	AC=2;AF=0.635;AN=2;DP=2470;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant25-variant26-variant27-variant29-variant33-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3525,348,0:0,0,41,77
chr1	162326716	.	A	G	1646.19	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=9.246;FractionInformativeReads=0.993;MQ=60;MQRankSum=-0.639;QD=12.19;ReadPosRankSum=-0.483;SOR=1.082;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:66,68:134:99:1674,0,1695:30,36,41,27
chr1	162333990	.	A	G	623.98	PASS	AC=1;AF=0.538;AN=2;DP=1835;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant26-variant27-variant28-variant32-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:651,0,918:20,16,14,13
chr1	162334100	.	T	C	2014.52	PASS	AC=1;AF=0.731;AN=2;DP=2360;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:757,0,897:15,17,15,14
chr1	162334875	.	T	TGCAC	526.96	PASS	AC=1;AF=0.529;AN=2;DP=620;set=variant2-variant4-variant5-variant7-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,27:43:99:1024,0,885:7,9,13,14
chr1	162334881	.	T	TGTGC	478.98	PASS	AC=1;AF=0.529;AN=2;DP=635;FractionInformativeReads=1;set=variant2-variant4-variant5-variant7-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,25:42:99:1013,0,923:8,9,12,13
chr1	162335256	.	C	T	1122.03	PASS	AC=1;AF=0.529;AN=2;DP=2065;MQ=60;set=variant2-variant4-variant5-variant7-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,62:138:99:1634,0,2049:27,49,22,40
chr1	162335424	.	T	C	471.1	PASS	AC=1;AF=0.829;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:444,0,104:2,4,1,10
chr1	162338228	.	CAAAAA	C,CAAAAAAA,CAAA,CAAAAAAAA,CAAAAAAAAA	508.03	PASS	AC=1,0,1,0,0;AF=0.349,0.279,0.209,0.047,0.012;AN=2;DP=1467;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:38:99:0,0,18,20
chr1	162338377	.	C	G	1017.66	PASS	AC=1;AF=0.802;AN=2;DP=1806;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:822,0,574:12,14,16,19
chr1	162338397	.	A	C	881.43	PASS	AC=1;AF=0.802;AN=2;DP=1620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,37:59:99:986,0,450:10,12,17,20
chr1	162338485	.	A	G	1028.8	PASS	AC=1;AF=0.802;AN=2;DP=1801;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,34:49:99:948,0,470:10,5,18,16
chr1	162338496	.	G	A	427.26	PASS	AC=1;AF=0.574;AN=2;DP=1165;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,35:52:99:927,0,538:13,4,20,15
chr1	162338853	.	G	A	1105.58	PASS	AC=1;AF=0.574;AN=2;DP=2186;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,46:113:99:1297,0,2632:42,25,29,17
chr1	162338855	.	G	GGT	640.96	PASS	AC=1;AF=0.5;AN=2;DP=868;set=variant5-variant15-variant20-variant21-variant27-variant28-variant29-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,57:109:99:1692,0,1926:35,17,34,23
chr1	162338962	.	C	T	8982.53	PASS	AC=1;AF=0.802;AN=2;DP=10693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:182,153:335:99:3680,0,4735:102,80,81,72
chr1	162339260	.	T	TG	378.52	PASS	AC=1;AF=0.713;AN=2;DP=1559;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,11:39:99:218,0,838:13,15,3,8
chr1	162339261	.	G	GA	215.78	PASS	AC=1;AF=0.574;AN=2;DP=1086;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,28:39:99:742,0,256:3,8,13,15
chr1	162339579	.	T	C	2552.2	PASS	AC=2;AF=1;AN=2;DP=4394;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3755,351,0:0,0,67,50
chr1	162343774	.	A	G	1242.02	PASS	AC=1;AF=0.633;AN=2;DP=4252;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,99:199:99:2356,0,2482:58,42,57,42
chr1	162344102	.	C	T	898.02	PASS	AC=1;AF=0.625;AN=2;DP=3988;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,83:181:99:1843,0,2351:54,44,44,39
chr1	162344390	.	A	G	1292.06	PASS	AC=2;AF=1;AN=2;DP=3214;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2591,252,0:0,0,31,53
chr1	162345091	.	G	A	2930.39	PASS	AC=2;AF=0.966;AN=2;DP=4272;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3773,339,0:0,0,80,33
chr1	162345294	.	G	T	1379.48	PASS	AC=1;AF=0.545;AN=2;DP=3428;MQ=60;set=variant2-variant4-variant5-variant9-variant12-variant13-variant15-variant20-variant21-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,92:176:99:2205,0,2255:33,51,39,53
chr1	162345472	.	C	T	431.9	PASS	AC=2;AF=0.966;AN=2;DP=954;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:841,69,0:0,0,5,18
chr1	162346433	.	CA	C	1249.58	PASS	AC=1;AF=0.607;AN=2;DP=3614;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,79:145:99:1993,0,1556:37,29,45,34
chr1	162348662	.	C	T	2282.49	PASS	AC=2;AF=0.989;AN=2;DP=3162;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2986,284,0:0,0,61,34
chr1	162352111	.	G	A	152.64	PASS	AC=2;AF=0.684;AN=2;DP=1054;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1255,125,0:0,0,17,25
chr1	162353726	.	T	C	1182.86	PASS	AC=2;AF=0.726;AN=2;DP=4053;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3650,381,0:0,0,67,60
chr1	162354525	.	A	G	1575.22	PASS	AC=2;AF=1;AN=2;DP=2868;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2313,219,0:0,0,35,38
chr1	162355883	.	G	A	622.89	PASS	AC=2;AF=0.621;AN=2;DP=2339;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2779,269,0:0,0,42,48
chr1	162356324	.	G	T	1049.27	PASS	AC=2;AF=1;AN=2;DP=1657;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1033,99,0:0,0,15,18
chr1	162356392	.	G	C	574.93	PASS	AC=2;AF=0.677;AN=2;DP=1207;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-filterInvariant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1334,123,0:0,0,23,18
chr1	162356487	.	G	T	618.09	PASS	AC=2;AF=0.677;AN=2;DP=1260;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1846,174,0:0,0,35,23
chr1	162366121	.	G	A	11165.4	PASS	AC=2;AF=1;AN=2;DP=13795;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,350:350:99:10424,1049,0:0,0,178,172
chr1	162367071	.	C	T	706.33	PASS	AC=2;AF=0.621;AN=2;DP=3050;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,138:139:99:4375,407,0:1,0,66,72
chr1	162381833	.	C	G	924.66	PASS	AC=1;AF=0.522;AN=2;DP=3903;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant20-variant24-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,81:176:99:1887,0,2394:46,49,40,41
chr1	162467014	.	C	G	1256.92	PASS	AC=1;AF=0.617;AN=2;DP=2687;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,57:102:99:1555,0,1159:28,17,37,20
chr1	162470961	.	A	AT	108.57	PASS	AC=1;AF=0.609;AN=2;DP=347;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:108,0,132:1,5,1,5
chr1	162473401	.	CAAAA	CAAA,CA,CAA,C	84.82	PASS	AC=0,0,2,0;AF=0.063,0.25,0.292,0.063;AN=2;DP=252;set=variant-variant3-variant4-variant5-variant7-variant8-variant13-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:7:21:0,0,7,0
chr1	162492874	.	G	A	3987.68	PASS	AC=1;AF=0.5;AN=2;DP=1009;MQ=60;set=variant3-variant15-variant17-variant43	GT:AD:DP:GQ:PL:SB	0/1:140,138:278:99:3782,0,3821:71,69,65,73
chr1	162493009	.	C	T	4593.63	PASS	AC=1;AF=0.638;AN=2;DP=11377;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:263,221:484:99:5113,0,6227:142,121,119,102
chr1	162493123	.	A	G	5213.26	PASS	AC=1;AF=0.633;AN=2;DP=10117;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:234,195:429:99:4782,0,6208:115,119,93,102
chr1	162493665	.	T	G	3589.18	PASS	AC=1;AF=0.633;AN=2;DP=8249;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,182:347:99:4172,0,4026:87,78,93,89
chr1	162494683	.	G	T	1534.85	PASS	AC=1;AF=0.633;AN=2;DP=3038;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,62:124:99:1640,0,1689:20,42,22,40
chr1	162496065	.	CTT	CT,C	2174.09	PASS	AC=1,0;AF=0.519,0.185;AN=2;DP=5477;MQ=60;set=variant-variant4-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:220:99:50,46,59,65
chr1	162497663	.	G	A	6399.52	PASS	AC=1;AF=0.633;AN=2;DP=13572;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:298,286:584:99:7866,0,8085:179,119,173,113
chr1	162498459	.	TA	T	821.24	PASS	AC=1;AF=0.638;AN=2;DP=2040;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:878,0,933:19,19,20,16
chr1	162498599	.	T	C	1849.31	PASS	AC=1;AF=0.633;AN=2;DP=3383;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,64:127:99:1757,0,1583:43,20,37,27
chr1	162498946	.	A	G	3001.15	PASS	AC=1;AF=0.633;AN=2;DP=5229;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,106:214:99:2719,0,2750:65,43,68,38
chr1	162625020	.	G	A	286.33	PASS	AC=2;AF=0.943;AN=2;DP=943;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1014,108,0:0,0,19,17
chr1	162675040	.	T	C	230.35	PASS	AC=2;AF=0.872;AN=2;DP=390;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:582,54,0:0,0,7,11
chr1	162722846	.	C	G	2205.02	PASS	AC=2;AF=0.989;AN=2;DP=3534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2390,233,0:0,0,50,28
chr1	162725655	.	A	C	774.68	PASS	AC=2;AF=0.989;AN=2;DP=591;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.55;ReadPosRankSum=-0.937;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:714,60,0:0,0,4,16
chr1	162736851	.	G	GAAAA,GAA,GAAA	872.08	PASS	AC=2,0,0;AF=0.705,0.273,0.011;AN=2;DP=638;FS=0;MQ=60;MQRankSum=1.106;ReadPosRankSum=0.715;set=Intersection	GT:DP:GQ:SB	1/1:25:84:0,0,23,2
chr1	162736856	.	C	A	1020.16	PASS	AC=2;AF=0.989;AN=2;DP=747;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.637;ReadPosRankSum=-1.331;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1285,87,0:0,0,27,2
chr1	162737338	.	G	C	238.54	PASS	AC=2;AF=1;AN=2;DP=139;FS=0;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:295,21,0:0,0,0,7
chr1	162740327	.	T	C	2330.27	PASS	AC=2;AF=0.989;AN=2;DP=6334;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5291,484,0:0,0,67,95
chr1	162742180	.	T	C	1755.35	PASS	AC=2;AF=0.989;AN=2;DP=2421;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2477,236,0:0,0,26,53
chr1	162743418	.	G	T	1530.75	PASS	AC=2;AF=0.989;AN=2;DP=2667;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2001,180,0:0,0,20,40
chr1	162748588	.	C	A	878.67	PASS	AC=2;AF=0.989;AN=2;DP=1314;FS=0;MQ=60;MQRankSum=0.902;ReadPosRankSum=0.332;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1659,146,0:0,0,11,38
chr1	162750208	.	C	T	674.58	PASS	AC=2;AF=0.989;AN=2;DP=1111;MQ=60;MQRankSum=0.568;ReadPosRankSum=0.016;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1499,108,0:0,0,8,28
chr1	162750210	.	CTT	C,CT	665.54	PASS	AC=2,0;AF=0.693,0.295;AN=2;DP=1058;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:36:99:0,0,8,28
chr1	162754049	.	G	A	904.69	PASS	AC=2;AF=0.756;AN=2;DP=1043;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1533,126,0:0,0,29,13
chr1	162754244	.	T	G	904.22	PASS	AC=2;AF=0.988;AN=2;DP=619;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:684,48,0:0,0,1,15
chr1	162760551	.	C	T	5695.74	PASS	AC=2;AF=0.756;AN=2;DP=8098;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,253:253:99:11390,777,0:0,0,162,91
chr1	162760554	.	T	C	5843.37	PASS	AC=2;AF=0.989;AN=2;DP=9636;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,267:267:99:11648,804,0:0,0,166,101
chr1	162765475	.	G	C	1631.55	PASS	AC=2;AF=0.989;AN=2;DP=1707;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1574,165,0:0,0,33,22
chr1	162765636	.	AAGTCTTAGATGAAG	A	767.4	PASS	AC=2;AF=0.763;AN=2;DP=720;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:43:624,43,0:0,0,2,12
chr1	162766476	.	C	T	5111.7	PASS	AC=2;AF=0.756;AN=2;DP=6390;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6380,643,0:0,0,113,102
chr1	162768784	.	CAAA	CAA,CA,C	81.82	PASS	AC=0,2,0;AF=0.512,0.369,0.036;AN=2;DP=479;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:7:21:0,0,4,3
chr1	162768939	.	TA	T	571.08	PASS	AC=2;AF=0.94;AN=2;DP=504;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:473,39,0:0,0,5,8
chr1	162774236	.	A	G	85.66	PASS	AC=2;AF=0.615;AN=2;DP=333;FractionInformativeReads=1;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:353,30,0:0,0,2,8
chr1	162775267	.	C	T	787.6	PASS	AC=2;AF=0.611;AN=2;DP=2252;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2912,282,0:0,0,36,58
chr1	162787243	.	T	A	34.4	PASS	AC=2;AF=0.72;AN=2;DP=416;set=filterInvariant-filterInvariant3-variant5-variant6-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant15-filterInvariant16-variant18-filterInvariant19-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant32-filterInvariant33-variant34-variant39-variant40-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:325,30,0:0,0,8,2
chr1	162822771	.	A	C	1277.87	PASS	AC=2;AF=0.919;AN=2;DP=1842;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2028,191,0:0,0,40,24
chr1	162822807	.	G	A	845.53	PASS	AC=1;AF=0.5;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant15-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,48:91:99:1226,0,1059:23,20,33,15
chr1	163038613	.	C	A	770.75	PASS	AC=1;AF=0.625;AN=2;DP=1939;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:686,0,963:23,15,17,11
chr1	163038853	.	G	A	1101.79	PASS	AC=1;AF=0.625;AN=2;DP=1673;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:756,0,976:11,22,9,20
chr1	163042020	.	C	CAA	589.59	PASS	AC=2;AF=0.977;AN=2;DP=742;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:642,45,0:0,0,7,8
chr1	163043088	.	A	G	373.32	PASS	AC=1;AF=0.677;AN=2;DP=695;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:282,0,528:13,6,8,4
chr1	163044892	.	TACACAC	TAC,T	142.73	PASS	AC=2,0;AF=0.902,0.085;AN=2;DP=386;FS=0;MQRankSum=0.751;ReadPosRankSum=-0.751;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:9:27:0,0,4,5
chr1	163045557	.	T	C	5599.46	PASS	AC=2;AF=0.977;AN=2;DP=6522;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4467,427,0:0,0,86,57
chr1	163045684	.	G	A	3841.58	PASS	AC=1;AF=0.5;AN=2;DP=328;FS=0.843;FractionInformativeReads=0.994;MQ=60;MQRankSum=3.218;QD=11.71;ReadPosRankSum=0.425;SOR=0.63;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:166,160:326:99:3870,0,4044:94,72,88,72
chr1	163045748	.	GA	G	7255.15	PASS	AC=2;AF=0.955;AN=2;DP=12099;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,284:286:99:8032,800,0:1,1,127,157
chr1	163046351	.	G	T	5511.37	PASS	AC=2;AF=0.647;AN=2;DP=3621;MQ=60;set=variant2-variant4-variant5-variant11-variant14-variant15-variant19-variant20-variant24-variant25-variant27-variant30-variant33-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:7052,692,0:0,0,94,137
chr1	163112037	.	G	A	312.01	PASS	AC=2;AF=0.563;AN=2;DP=520;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant27-variant30-variant31-variant33-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1707,156,0:0,0,34,18
chr1	163113375	.	G	C	2116.38	PASS	AC=2;AF=0.725;AN=2;DP=5658;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6324,581,0:0,0,82,112
chr1	163113566	.	A	T	2843.74	PASS	AC=2;AF=0.72;AN=2;DP=6090;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,158:159:99:5059,467,0:0,1,87,71
chr1	163114605	.	G	A	962.62	PASS	AC=2;AF=0.725;AN=2;DP=3344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3615,334,0:0,0,40,72
chr1	163116030	.	CT	C,CTT	1573.59	PASS	AC=1,0;AF=0.477,0.023;AN=2;DP=18162;set=variant-filterInvariant2-variant3-variant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:420:99:122,154,68,76
chr1	163117599	.	T	TG	43.55	PASS	AC=2;AF=1;AN=2;DP=156;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:200,15,0:0,0,2,3
chr1	163122528	.	G	C	998.72	PASS	AC=2;AF=0.667;AN=2;DP=2141;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2005,180,0:0,0,21,39
chr1	163187263	.	G	A	1299.95	PASS	AC=1;AF=0.793;AN=2;DP=1312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,13:45:99:337,0,980:24,8,11,2
chr1	163292040	.	T	C	128.94	PASS	AC=1;AF=0.571;AN=2;DP=299;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:261,0,103:3,3,2,7
chr1	163295678	.	A	C	2203.68	PASS	AC=1;AF=0.713;AN=2;DP=1697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,33:51:99:1041,0,623:18,0,26,7
chr1	163298768	.	T	TA,TAA	496.23	PASS	AC=1,0;AF=0.516,0.016;AN=2;DP=1703;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant36-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:39:99:2,12,5,20
chr1	163307944	.	T	C	288.25	PASS	AC=1;AF=0.641;AN=2;DP=780;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:520,0,282:2,8,6,12
chr1	163308027	.	TAA	TA,TAAA,TAAAA,T	185.95	PASS	AC=0,0,1,0;AF=0.25,0.125,0.375,0.042;AN=2;DP=88;MQ=60;set=variant2-variant3-variant12-variant15-variant16-variant23-variant26-variant27-variant31-variant32-variant33-variant36	GT:DP:GQ:SB	0/3:8:84:1,2,2,3
chr1	163309219	.	A	T	2397.06	PASS	AC=1;AF=0.641;AN=2;DP=3066;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,47:120:99:1131,0,1827:36,37,22,25
chr1	163309302	.	C	T	1102.68	PASS	AC=1;AF=0.943;AN=2;DP=1784;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:501,0,937:7,23,8,13
chr1	163315350	.	G	C	224.75	PASS	AC=1;AF=0.672;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:100,0,201:5,1,3,0
chr1	164528870	.	T	C	193.39	PASS	AC=2;AF=0.963;AN=2;DP=238;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:238,18,0:0,0,1,5
chr1	164529471	.	G	C	2634.49	PASS	AC=1;AF=0.633;AN=2;DP=1372;set=variant7-variant14-variant15-variant16-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,49:105:99:1234,0,1382:22,34,19,30
chr1	164529666	.	G	A	151.77	PASS	AC=1;AF=0.75;AN=2;DP=118;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant27-variant29-variant31-variant32-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:28:201,0,28:1,1,0,5
chr1	164546160	.	A	T	883.97	PASS	AC=1;AF=0.621;AN=2;DP=764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant15-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:472,0,589:13,13,9,11
chr1	164574684	.	T	C	527.24	PASS	AC=2;AF=0.841;AN=2;DP=585;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:806,69,0:0,0,5,18
chr1	164789444	.	A	G	1591.72	PASS	AC=2;AF=1;AN=2;DP=1736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1386,117,0:0,0,9,30
chr1	164818907	.	C	T	1243.65	PASS	AC=2;AF=0.989;AN=2;DP=1271;FS=0;MQ=60;MQRankSum=-1.357;ReadPosRankSum=-0.895;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1586,117,0:0,0,37,2
chr1	165171059	.	C	T	244.21	PASS	AC=1;AF=0.625;AN=2;DP=504;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant15-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:147,0,453:10,6,4,3
chr1	165171677	.	T	C	728.95	PASS	AC=1;AF=0.62;AN=2;DP=1038;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:688,0,451:4,14,10,12
chr1	165171712	.	G	A	456.59	PASS	AC=1;AF=0.62;AN=2;DP=644;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:405,0,251:3,6,6,8
chr1	165172158	.	T	A	664.47	PASS	AC=1;AF=0.62;AN=2;DP=956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:447,0,708:16,9,7,11
chr1	165173216	.	A	G	2438.43	PASS	AC=2;AF=1;AN=2;DP=5627;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4250,404,0:0,0,53,82
chr1	165175374	.	G	A	1374.06	PASS	AC=2;AF=0.824;AN=2;DP=1902;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,35:36:98:1279,98,0:1,0,7,28
chr1	165180089	.	T	A	2615.26	PASS	AC=2;AF=0.845;AN=2;DP=3758;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3546,335,0:0,0,46,66
chr1	165180229	.	TA	T	502.57	PASS	AC=1;AF=0.5;AN=2;DP=243;MQ=60;set=variant5-variant7-variant8-variant12-variant15-variant29-variant34-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,13:19:99:430,0,167:2,4,2,11
chr1	165218679	.	C	T	2140.46	PASS	AC=1;AF=0.583;AN=2;DP=1401;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant23-variant24-variant29-variant34-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:937,0,902:20,15,22,16
chr1	165218792	.	G	A	5128.51	PASS	AC=1;AF=0.522;AN=2;DP=3537;set=variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant18-variant20-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,85:150:99:2058,0,1615:35,30,45,40
chr1	165370757	.	G	A	251.22	PASS	AC=1;AF=0.676;AN=2;DP=381;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:271,0,190:1,5,1,7
chr1	165375835	.	A	G	41.43	PASS	AC=2;AF=0.813;AN=2;DP=1326;MQ=60;set=filterInvariant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1373,117,0:0,0,27,12
chr1	165375895	.	A	C	410.32	PASS	AC=2;AF=0.813;AN=2;DP=2122;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2214,201,0:0,0,41,26
chr1	165376043	.	T	C	1442.4	PASS	AC=2;AF=0.813;AN=2;DP=5238;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4423,438,0:0,0,70,76
chr1	165376227	.	C	CCG	889.36	PASS	AC=2;AF=0.757;AN=2;DP=1223;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1620,108,0:0,0,10,26
chr1	165376231	.	CTG	C	847.37	PASS	AC=2;AF=0.757;AN=2;DP=1124;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1600,108,0:0,0,10,25
chr1	165377389	.	T	C	903.3	PASS	AC=2;AF=1;AN=2;DP=1029;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:975,78,0:0,0,21,5
chr1	165377552	.	G	A	4391.46	PASS	AC=1;AF=0.838;AN=2;DP=5309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,76:180:99:1711,0,2546:54,50,40,36
chr1	165378729	.	TACAC	TAC,T	228.31	PASS	AC=1,1;AF=0.58,0.42;AN=2;DP=1438;FS=0;set=Intersection	GT:DP:GQ:SB	2/1:49:99:0,0,32,17
chr1	165378733	.	C	T	776.73	PASS	AC=1;AF=0.604;AN=2;DP=833;set=variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:938,0,928:17,7,16,10
chr1	165378735	.	C	T	776.73	PASS	AC=1;AF=0.587;AN=2;DP=809;FractionInformativeReads=1;set=variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant25-variant27-variant28-variant29-variant32-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:938,0,928:18,7,16,10
chr1	165386567	.	C	T	71.22	PASS	AC=2;AF=0.594;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:797,54,0:0,0,0,18
chr1	165389129	.	G	A	1027.79	PASS	AC=1;AF=0.558;AN=2;DP=2988;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,82:149:99:2112,0,1565:41,26,49,33
chr1	165513417	.	A	G	300.51	PASS	AC=1;AF=0.536;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant12-variant15-variant17-variant21-variant23-variant25-variant29-variant30-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:357,0,180:5,2,7,4
chr1	165513439	.	A	C	162.06	PASS	AC=2;AF=0.955;AN=2;DP=887;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:603,51,0:0,0,10,7
chr1	165513451	.	G	C	73.94	PASS	AC=1;AF=0.5;AN=2;DP=143;set=variant4-filterInvariant5-variant12-variant15-variant26-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:70:70,0,517:9,7,4,0
chr1	165513456	.	A	T,C	160.65	PASS	AC=1,1;AF=0.807,0.125;AN=2;DP=914;set=Intersection	GT:DP:GQ:SB	1/2:18:86:2,0,10,6
chr1	165513463	.	C	G	151.64	PASS	AC=1;AF=0.807;AN=2;DP=947;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,22:27:74:669,0,74:5,0,15,7
chr1	165533005	.	C	A	1122.54	PASS	AC=1;AF=0.604;AN=2;DP=3392;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant34-variant35-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,84:166:99:2131,0,2192:37,45,43,41
chr1	165533188	.	A	C	343.08	PASS	AC=1;AF=0.604;AN=2;DP=914;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant34-variant35-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:554,0,492:8,11,3,15
chr1	165533230	.	G	A	536.23	PASS	AC=1;AF=0.538;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant12-variant15-variant17-variant21-variant23-variant25-variant29-variant30-variant35-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:240,0,399:7,8,2,7
chr1	165600146	.	G	A	522.31	PASS	AC=1;AF=0.655;AN=2;DP=703;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:183,0,304:7,3,5,2
chr1	165600267	.	T	A	1124.94	PASS	AC=1;AF=0.655;AN=2;DP=1318;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:603,0,611:10,12,13,12
chr1	165600391	.	C	T	545.06	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.754;QD=12.39;ReadPosRankSum=0.251;SOR=0.784;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:573,0,470:10,8,15,11
chr1	165600606	.	C	T	618.16	PASS	AC=1;AF=0.655;AN=2;DP=947;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:218,0,602:9,14,5,7
chr1	165601215	.	G	C	1137.21	PASS	AC=1;AF=0.78;AN=2;DP=1328;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:615,0,485:13,3,15,3
chr1	165601365	.	T	C	4856.44	PASS	AC=1;AF=0.655;AN=2;DP=5144;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,112:190:99:2937,0,1757:43,35,64,48
chr1	165601466	.	G	A	3726.07	PASS	AC=2;AF=0.736;AN=2;DP=4445;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4783,470,0:0,0,62,95
chr1	165619424	.	G	T	91.91	PASS	AC=2;AF=0.881;AN=2;DP=401;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:494,39,0:0,0,3,10
chr1	165621322	.	TATTATC	T	1339.4	PASS	AC=1;AF=0.55;AN=2;DP=1245;MQ=60;set=variant-variant4-variant6-variant7-variant12-variant15-variant17-variant19-variant22-variant23-variant25-variant27-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1743,0,3259:15,27,11,34
chr1	165624799	.	G	T	713.15	PASS	AC=2;AF=0.708;AN=2;DP=2313;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2514,227,0:0,0,24,52
chr1	165630475	.	C	T	350.4	PASS	AC=2;AF=0.793;AN=2;DP=981;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:982,87,0:0,0,22,7
chr1	165630495	.	T	C	570.72	PASS	AC=2;AF=0.793;AN=2;DP=1718;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1622,150,0:0,0,35,15
chr1	165630698	.	A	G	515.57	PASS	AC=2;AF=0.793;AN=2;DP=2595;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,81:82:99:2625,200,0:0,1,28,53
chr1	165630784	.	C	CA,CAA	111.78	PASS	AC=1,0;AF=0.526,0.053;AN=2;DP=751;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:DP:GQ:SB	0/1:20:67:2,3,6,9
chr1	165631123	.	A	G	132.68	PASS	AC=2;AF=0.887;AN=2;DP=179;FS=0;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:35:408,35,0:0,0,6,6
chr1	165634425	.	C	G	1153.23	PASS	AC=2;AF=0.708;AN=2;DP=2494;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2416,245,0:0,0,33,49
chr1	165636749	.	A	G	411.2	PASS	AC=2;AF=0.681;AN=2;DP=648;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:746,57,0:0,0,2,17
chr1	165648559	.	T	G	222.24	PASS	AC=2;AF=0.694;AN=2;DP=1182;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1275,114,0:0,0,27,11
chr1	165648886	.	G	A	495.41	PASS	AC=2;AF=0.694;AN=2;DP=991;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1394,96,0:0,0,5,27
chr1	165648894	.	C	G	416.25	PASS	AC=2;AF=0.694;AN=2;DP=845;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:90:1311,90,0:0,0,4,24
chr1	165649715	.	T	C	1380.69	PASS	AC=1;AF=0.5;AN=2;DP=426;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant23-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,51:103:99:1409,0,1211:29,23,30,21
chr1	165651153	.	T	A	70.65	PASS	AC=1;AF=0.718;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:278,0,657:16,1,8,0
chr1	165651502	.	G	C	389.95	PASS	AC=1;AF=0.713;AN=2;DP=1263;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:609,0,531:4,13,9,15
chr1	165652273	.	A	G	2201.79	PASS	AC=1;AF=0.713;AN=2;DP=6147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,89:168:99:2145,0,1920:45,34,50,39
chr1	165652445	.	A	G	1007.72	PASS	AC=1;AF=0.713;AN=2;DP=1812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:1001,0,831:8,22,7,26
chr1	165667829	.	CGGGCCGCGGGAGGGGCG	CGGGCCGCGGGAGGGGCGGGGCCGCGGGAGGGGCG,C	217.76	PASS	AC=1,0;AF=0.25,0.25;AN=2;DP=204;MQ=60;set=variant15-variant41	GT:DP:GQ:SB	0/1:30:99:10,15,3,2
chr1	165696836	.	G	GA	3562.75	PASS	AC=1;AF=0.5;AN=2;DP=2852;MQ=60;set=variant6-variant8-variant15-variant24-variant31-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:233,227:460:99:5076,0,5298:113,120,117,110
chr1	165721223	.	T	C	663.56	PASS	AC=2;AF=0.769;AN=2;DP=751;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1097,84,0:0,0,24,4
chr1	165721489	.	ATT	AT,A	67.51	PASS	AC=1,0;AF=0.269,0.231;AN=2;DP=488;set=filterInvariant-variant9-filterInvariant15-variant18-filterInvariant21-variant23-variant24-variant25-variant27-variant29-filterInvariant37-variant39-variant42	GT:DP:GQ:SB	0/1:28:99:3,14,2,9
chr1	165727274	.	CTCT	C	1899.33	PASS	AC=2;AF=0.594;AN=2;DP=1474;MQ=60;set=variant6-variant8-variant9-variant11-variant15-variant18-variant19-variant21-variant23-variant24-variant28-variant31-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:5021,338,0:0,0,46,66
chr1	165737704	.	C	G	3492.72	PASS	AC=2;AF=0.977;AN=2;DP=5910;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4810,496,0:0,0,84,82
chr1	165738311	.	A	T	1761.51	PASS	AC=2;AF=0.966;AN=2;DP=2297;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2031,195,0:0,0,30,35
chr1	165738463	.	G	C	606.79	PASS	AC=2;AF=0.977;AN=2;DP=1211;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:983,93,0:0,0,11,20
chr1	165769308	.	T	G	273.24	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant17-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:408,0,272:6,6,8,10
chr1	165796993	.	G	C	2879.42	PASS	AC=1;AF=0.5;AN=2;DP=206;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.283;QD=13.98;ReadPosRankSum=2.433;SOR=0.725;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:96,110:206:99:2908,0,2424:56,40,65,45
chr1	165859630	.	C	G	3811.89	PASS	AC=2;AF=1;AN=2;DP=6810;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5965,553,0:0,0,89,96
chr1	165859640	.	G	GTGT	2982.88	PASS	AC=1;AF=0.531;AN=2;DP=2430;MQ=60;set=variant2-variant4-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant26-variant31-variant33-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,80:163:99:3073,0,3203:39,44,35,45
chr1	166029970	.	T	C	1899.53	PASS	AC=2;AF=0.725;AN=2;DP=3599;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2878,290,0:0,0,41,56
chr1	166030079	.	A	AAG	493.72	PASS	AC=2;AF=1;AN=2;DP=720;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:700,48,0:0,0,0,16
chr1	166124134	.	A	G	4307.23	PASS	AC=2;AF=1;AN=2;DP=6220;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4495,425,0:0,0,57,85
chr1	166136270	.	TG	T	58.62	PASS	AC=2;AF=0.904;AN=2;DP=274;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant33-variant35-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:201,21,0:0,0,3,4
chr1	166590254	.	A	G	632.23	PASS	AC=1;AF=0.545;AN=2;DP=581;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant20-variant33-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:1046,0,846:9,21,13,27
chr1	166591043	.	T	C	1199.5	PASS	AC=2;AF=0.763;AN=2;DP=1082;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1126,96,0:0,0,25,7
chr1	166591271	.	T	C	1006.59	PASS	AC=1;AF=0.538;AN=2;DP=1234;MQ=60;set=variant4-variant5-variant11-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant29-variant31	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1331,0,1417:25,30,19,30
chr1	166809291	.	T	G	100.62	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:337,0,164:5,5,9,4
chr1	166809602	.	C	G	2022.88	PASS	AC=1;AF=0.767;AN=2;DP=3110;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,26:69:99:580,0,1089:19,24,10,16
chr1	166816108	.	T	A	415.3	PASS	AC=1;AF=0.594;AN=2;DP=1235;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant21-variant23-variant24-variant26-variant28-variant33-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,38:95:99:1095,0,1624:24,33,15,23
chr1	166820104	.	G	A	2249.59	PASS	AC=1;AF=0.621;AN=2;DP=2236;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,30:64:99:823,0,894:22,12,21,9
chr1	166821770	.	GTTA	G	1653.99	PASS	AC=1;AF=0.5;AN=2;DP=498;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:81,85:166:99:3317,0,3255:46,35,47,38
chr1	166822183	.	G	A	3242.36	PASS	AC=1;AF=0.725;AN=2;DP=4416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,39:107:99:936,0,1841:38,30,23,16
chr1	166823058	.	C	CA	1924.15	PASS	AC=1;AF=0.5;AN=2;DP=555;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:90,89:179:99:2814,0,2811:57,33,57,32
chr1	166825127	.	A	AC	10713.1	PASS	AC=1;AF=0.725;AN=2;DP=8889;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,122:270:99:4056,0,4944:76,72,61,61
chr1	166825809	.	A	G	932.07	PASS	AC=1;AF=0.5;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:60,62:122:99:1727,0,1650:39,21,45,17
chr1	166825837	.	A	G	3479.81	PASS	AC=1;AF=0.629;AN=2;DP=4154;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,89:166:99:2257,0,2038:49,28,56,33
chr1	166826144	.	A	G	4511.53	PASS	AC=1;AF=0.5;AN=2;DP=1519;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:235,238:473:99:6004,0,5673:124,111,133,105
chr1	166826713	.	T	C	3673.35	PASS	AC=1;AF=0.5;AN=2;DP=1486;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:232,213:445:99:5206,0,5629:109,123,111,102
chr1	166826773	.	C	T	11066.5	PASS	AC=1;AF=0.629;AN=2;DP=10834;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:167,173:340:99:4320,0,4326:75,92,84,89
chr1	166827003	.	T	TA	1524.49	PASS	AC=1;AF=0.5;AN=2;DP=197;FS=0;MQ=60;set=variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:63,42:105:99:1172,0,1970:18,45,12,30
chr1	166838866	.	A	AATTTT	342.9	PASS	AC=1;AF=0.604;AN=2;DP=663;MQ=60;set=variant2-variant3-variant4-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:890,0,1252:5,13,6,17
chr1	166904818	.	T	C	466.71	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:602,0,681:11,15,9,15
chr1	166905927	.	C	T	1130.28	PASS	AC=1;AF=0.533;AN=2;DP=1246;MQ=60;set=variant4-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant25-variant26-variant27-variant28-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:51,50:101:99:1172,0,1140:24,27,21,29
chr1	166944256	.	TTC	T	79.63	PASS	AC=1;AF=0.625;AN=2;DP=123;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,517:7,1,2,1
chr1	166944273	.	T	A	432.12	PASS	AC=1;AF=0.75;AN=2;DP=71;MQ=60;set=variant9-variant15-variant26-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:77:77,0,517:7,1,2,1
chr1	166958601	.	T	C	2644.54	PASS	AC=1;AF=0.6;AN=2;DP=2508;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant23-variant24-variant26-variant28-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,84:174:99:1926,0,2364:49,41,41,43
chr1	166958710	.	T	G	1547.04	PASS	AC=1;AF=0.567;AN=2;DP=1590;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant23-variant24-variant26-variant28-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,54:123:99:1328,0,1603:29,40,24,30
chr1	166958826	.	C	G	384.55	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:433,0,345:1,9,3,11
chr1	166958937	.	G	T	855.99	PASS	AC=1;AF=0.577;AN=2;DP=514;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant13-variant15-variant20-variant23-variant26-variant28-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:476,0,709:17,7,13,5
chr1	166963234	.	T	C	2953.53	PASS	AC=1;AF=0.705;AN=2;DP=1365;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant23-variant26-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:982,0,696:16,11,26,12
chr1	167022021	.	A	G	45.98	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=11.49;ReadPosRankSum=0.727;SOR=0.446;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:74,0,34:1,0,2,1
chr1	167022262	.	T	G	1359.32	PASS	AC=1;AF=0.657;AN=2;DP=938;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:589,0,344:9,8,15,7
chr1	167022381	.	A	G	1312.84	PASS	AC=1;AF=0.629;AN=2;DP=1005;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:512,0,495:10,8,7,10
chr1	167022701	.	A	G	446.78	PASS	AC=1;AF=0.558;AN=2;DP=953;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:484,0,448:9,11,11,9
chr1	167022920	.	C	G	1394.02	PASS	AC=1;AF=0.596;AN=2;DP=1856;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,44:75:99:1073,0,718:17,14,22,22
chr1	167023082	.	G	GC	1133.46	PASS	AC=1;AF=0.558;AN=2;DP=1928;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,52:94:99:1471,0,1137:21,21,27,25
chr1	167023426	.	C	T	1246.12	PASS	AC=1;AF=0.558;AN=2;DP=2392;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,70:117:99:1957,0,1312:16,31,29,41
chr1	167059462	.	G	C	2276.88	PASS	AC=1;AF=0.671;AN=2;DP=5065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,68:154:99:1687,0,2051:53,33,38,30
chr1	167059833	.	A	G	961.77	PASS	AC=1;AF=0.676;AN=2;DP=942;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:514,0,636:11,15,10,12
chr1	167094908	.	G	T	506.3	PASS	AC=1;AF=0.625;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant26-variant27-variant31-variant32-variant33-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:666,0,772:20,6,18,11
chr1	167098131	.	G	A	2525.7	PASS	AC=1;AF=0.857;AN=2;DP=3230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,52:95:99:1586,0,1205:25,18,31,21
chr1	167210785	.	G	C	10256.6	PASS	AC=2;AF=0.92;AN=2;DP=15246;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,402:402:99:12221,1204,0:0,0,173,229
chr1	167353258	.	AT	A	190.63	PASS	AC=2;AF=0.738;AN=2;DP=1145;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:909,96,0:0,0,6,26
chr1	167367193	.	C	T	278.6	PASS	AC=2;AF=0.625;AN=2;DP=1287;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1943,176,0:0,0,34,25
chr1	167370988	.	C	A	133.71	PASS	AC=2;AF=0.817;AN=2;DP=216;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,1,5
chr1	167382374	.	A	C	817.91	PASS	AC=2;AF=0.75;AN=2;DP=4154;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,119:121:99:3370,312,0:1,1,52,67
chr1	167382399	.	AGTGTGT	AGT,AGTGTGTGTGT,AGTGT,A	684.97	PASS	AC=1,0,1,0;AF=0.622,0.024,0.049,0.049;AN=2;DP=3189;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:66:99:0,0,23,43
chr1	167385178	.	G	GA,GAA	1117.67	PASS	AC=1,1;AF=0.5,0.088;AN=2;DP=9631;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant18-variant19-filterInvariant20-variant21-filterInvariant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:262:99:17,13,140,92
chr1	167385324	.	TAAAAA	TAAA,TAAAA,TAAAAAA,T	2220.98	PASS	AC=1,1,0,0;AF=0.182,0.489,0.011,0.011;AN=2;DP=6680;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:139:99:9,10,60,60
chr1	167389405	.	CTT	C,CT	1467.81	PASS	AC=1,1;AF=0.261,0.568;AN=2;DP=4343;set=Intersection	GT:DP:GQ:SB	1/2:61:93:3,7,9,42
chr1	167389463	.	T	C	1559.58	PASS	AC=2;AF=0.943;AN=2;DP=1110;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1312,93,0:0,0,2,29
chr1	167389601	.	G	A	403.27	PASS	AC=1;AF=0.75;AN=2;DP=63;FractionInformativeReads=1;MQ=60;MQRankSum=0.467;ReadPosRankSum=0.571;set=variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:432,0,326:7,4,11,4
chr1	167389619	.	G	T	183.1	PASS	AC=2;AF=0.722;AN=2;DP=906;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1246,93,0:0,0,23,8
chr1	167389761	.	G	T	1346.28	PASS	AC=2;AF=0.722;AN=2;DP=2929;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2905,296,0:0,0,47,52
chr1	167389822	.	C	T	2979.9	PASS	AC=2;AF=0.92;AN=2;DP=2946;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2019,195,0:0,0,26,39
chr1	167391904	.	C	T	5833	PASS	AC=2;AF=0.92;AN=2;DP=5929;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4684,449,0:0,0,88,62
chr1	167392216	.	C	G	6848.75	PASS	AC=2;AF=0.932;AN=2;DP=7967;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:7369,671,0:0,0,112,112
chr1	167392342	.	A	G	10035	PASS	AC=2;AF=0.898;AN=2;DP=12138;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,334:334:99:10566,1000,0:0,0,177,157
chr1	167392558	.	A	G	6359.56	PASS	AC=2;AF=0.989;AN=2;DP=7155;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:7036,622,0:0,0,94,114
chr1	167393128	.	T	C	673.47	PASS	AC=2;AF=0.625;AN=2;DP=1317;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1841,147,0:0,0,12,37
chr1	167394491	.	C	T	1426.92	PASS	AC=2;AF=0.943;AN=2;DP=2335;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1932,197,0:0,0,34,32
chr1	167395474	.	TAA	T,TA	11557.6	PASS	AC=2,0;AF=0.92,0.023;AN=2;DP=12429;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:345:99:1,0,160,184
chr1	167396643	.	A	ACT	8727.54	PASS	AC=2;AF=0.989;AN=2;DP=9178;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:10285,695,0:0,0,96,135
chr1	167399868	.	T	TAG	6447.04	PASS	AC=2;AF=0.989;AN=2;DP=6060;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,181:181:99:8185,554,0:0,0,109,72
chr1	167399962	.	T	C	6243.87	PASS	AC=2;AF=0.989;AN=2;DP=9534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,293:293:99:8837,878,0:0,0,143,150
chr1	167400074	.	T	A	2962.52	PASS	AC=2;AF=0.852;AN=2;DP=4053;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3930,336,0:0,0,40,72
chr1	167403504	.	A	G	513.47	PASS	AC=2;AF=0.886;AN=2;DP=812;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:558,42,0:0,0,1,13
chr1	167404078	.	G	A	525.81	PASS	AC=2;AF=0.886;AN=2;DP=2347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2015,218,0:0,0,39,34
chr1	167404179	.	G	A	340.71	PASS	AC=1;AF=0.605;AN=2;DP=575;set=variant3-variant9-variant14-variant15-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:318,0,521:6,13,5,8
chr1	167408073	.	C	A	612.14	PASS	AC=2;AF=0.886;AN=2;DP=918;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:982,75,0:0,0,2,23
chr1	167487586	.	C	G	432.24	PASS	AC=1;AF=0.5;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant10-variant11-variant12-variant15-variant17-variant19-variant30-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1128,0,845:22,16,27,13
chr1	167487880	.	C	T	475.41	PASS	AC=1;AF=0.5;AN=2;DP=585;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant15-variant16-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,39:91:99:905,0,1369:24,28,19,20
chr1	167487999	.	T	A	132.16	PASS	AC=1;AF=0.5;AN=2;DP=152;MQ=60;set=variant14-variant15-variant16-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:164,0,376:2,10,1,7
chr1	167510837	.	T	C	13965.6	PASS	AC=2;AF=0.955;AN=2;DP=15723;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,389:389:99:12260,1166,0:0,0,197,192
chr1	167510996	.	G	A	8941.82	PASS	AC=2;AF=0.955;AN=2;DP=10693;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,316:316:99:9958,946,0:0,0,136,180
chr1	167515272	.	T	C	1957.31	PASS	AC=1;AF=0.898;AN=2;DP=2714;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,41:68:99:1099,0,651:18,9,27,14
chr1	167522453	.	C	T	515.73	PASS	AC=2;AF=0.89;AN=2;DP=692;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:566,54,0:0,0,12,6
chr1	167523029	.	C	T	1271.79	PASS	AC=1;AF=0.5;AN=2;DP=380;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant12-variant15-variant29-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:824,0,653:12,19,14,22
chr1	167673738	.	T	TA	298.57	PASS	AC=1;AF=0.536;AN=2;DP=831;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:513,0,475:14,6,19,3
chr1	167674287	.	CAGCTAATTT	C	884.3	PASS	AC=1;AF=0.536;AN=2;DP=1636;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,25:80:99:923,0,14038:38,17,16,9
chr1	167674303	.	T	C	1187.1	PASS	AC=1;AF=0.536;AN=2;DP=1669;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,28:83:99:1040,0,14609:39,16,19,9
chr1	167674306	.	CTAATTT	C	1258.41	PASS	AC=1;AF=0.536;AN=2;DP=1794;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,29:91:99:1066,0,14764:43,19,20,9
chr1	167674312	.	T	TCG	1216.42	PASS	AC=1;AF=0.536;AN=2;DP=1778;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,29:89:99:1069,0,14622:42,18,20,9
chr1	167674569	.	T	TAA	1215.22	PASS	AC=1;AF=0.536;AN=2;DP=3065;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,52:106:99:1537,0,1635:18,36,16,36
chr1	167674653	.	C	G	368.79	PASS	AC=1;AF=0.536;AN=2;DP=1089;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:684,0,769:12,18,11,16
chr1	167675535	.	A	G	157.69	PASS	AC=1;AF=0.556;AN=2;DP=394;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,6:27:99:145,0,624:7,14,2,4
chr1	167691100	.	G	A	403.48	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=2.587;FractionInformativeReads=1;MQ=60;MQRankSum=0.239;QD=9.61;ReadPosRankSum=-1.574;SOR=1.127;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:432,0,484:11,11,12,8
chr1	167734793	.	C	T	1528.47	PASS	AC=1;AF=0.545;AN=2;DP=1244;MQ=60;set=variant-variant6-variant7-variant9-variant15-variant18-variant20-variant26-variant30-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:74,50:124:99:1372,0,2026:39,35,29,21
chr1	167741372	.	G	A	482.54	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=3.788;FractionInformativeReads=1;MQ=59.77;MQRankSum=1.787;QD=8.94;ReadPosRankSum=-1.892;SOR=1.012;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:511,0,799:15,17,13,9
chr1	167758116	.	CTT	CT,C	111.93	PASS	AC=1,0;AF=0.61,0.037;AN=2;DP=984;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:26:99:6,6,6,8
chr1	167758262	.	C	T	805.99	PASS	AC=1;AF=0.542;AN=2;DP=735;set=variant-variant6-variant7-variant9-variant15-variant18-variant20-variant26-variant30-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:32,44:76:99:1256,0,827:19,13,29,15
chr1	167758651	.	C	T	1375.37	PASS	AC=1;AF=0.545;AN=2;DP=1048;MQ=60;set=variant-variant6-variant7-variant9-variant15-variant18-variant20-variant26-variant30-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:56,65:121:99:1842,0,1578:22,34,20,45
chr1	167758901	.	A	G	875.37	PASS	AC=1;AF=0.744;AN=2;DP=1628;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:704,0,537:10,11,15,12
chr1	167759281	.	T	C	251.84	PASS	AC=2;AF=0.706;AN=2;DP=1339;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1526,158,0:0,0,29,24
chr1	167759573	.	T	C	1033.41	PASS	AC=1;AF=0.542;AN=2;DP=836;MQ=60;set=variant-variant6-variant7-variant9-variant15-variant18-variant20-variant26-variant30-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:28,36:64:99:984,0,787:15,13,19,17
chr1	167759838	.	C	T	1616.8	PASS	AC=1;AF=0.571;AN=2;DP=788;MQ=60;set=variant4-variant6-variant15-variant24-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:53,60:113:99:1652,0,1515:37,16,38,22
chr1	167760165	.	T	G	5068.61	PASS	AC=1;AF=0.607;AN=2;DP=4488;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,83:188:99:2029,0,2833:40,65,32,51
chr1	167760522	.	G	C	905.9	PASS	AC=2;AF=0.833;AN=2;DP=1910;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1716,156,0:0,0,24,28
chr1	167760731	.	T	C	3254.42	PASS	AC=2;AF=0.833;AN=2;DP=4322;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3709,360,0:0,0,68,52
chr1	167760807	.	A	G	1362.85	PASS	AC=2;AF=0.718;AN=2;DP=3560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,127:128:99:3801,345,0:1,0,56,71
chr1	167778843	.	G	A	2506.82	PASS	AC=1;AF=0.719;AN=2;DP=6188;MQ=60;set=variant-variant3-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,124:233:99:3190,0,2902:67,42,70,54
chr1	167787265	.	C	T	1839.75	PASS	AC=1;AF=0.577;AN=2;DP=426;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant11-variant13-variant15-variant18-variant19-variant21-variant25-variant32-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:392,0,817:20,4,12,2
chr1	167792356	.	G	A	1466.68	PASS	AC=1;AF=0.667;AN=2;DP=315;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant32	GT:AD:DP:GQ:PL:SB	0/1:58,60:118:99:1495,0,1539:19,39,20,40
chr1	167793670	.	C	T	2175.23	PASS	AC=1;AF=0.654;AN=2;DP=2072;MQ=60;set=variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1029,0,1093:28,17,28,14
chr1	167806647	.	T	A	1421.72	PASS	AC=1;AF=0.803;AN=2;DP=2494;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,65:113:99:1580,0,1101:18,30,27,38
chr1	167806696	.	T	C	1308.48	PASS	AC=1;AF=0.841;AN=2;DP=1514;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,40:61:99:1182,0,564:6,15,12,28
chr1	167815167	.	T	C	2898.38	PASS	AC=1;AF=0.647;AN=2;DP=1813;FractionInformativeReads=1;set=variant2-variant4-variant5-variant8-variant15-variant16-variant22-variant23-variant24-variant25-variant28-variant31-variant32-variant34-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:94,62:156:99:1507,0,2566:50,44,35,27
chr1	167815610	.	C	A	810	PASS	AC=1;AF=0.675;AN=2;DP=539;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant10-variant15-variant16-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:635,0,484:3,13,6,16
chr1	167817639	.	A	G	3206.75	PASS	AC=2;AF=0.769;AN=2;DP=3222;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:2942,315,0:0,0,52,53
chr1	167823512	.	T	C	1678.05	PASS	AC=1;AF=0.667;AN=2;DP=1295;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:543,0,686:18,7,14,9
chr1	167825485	.	T	C	3035.54	PASS	AC=1;AF=0.654;AN=2;DP=2791;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,51:126:99:1151,0,1964:37,38,29,22
chr1	167825718	.	C	T	358.76	PASS	AC=1;AF=0.647;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant11-variant15-variant16-variant18-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:168,0,453:2,11,0,5
chr1	167844668	.	C	CT	37.58	PASS	AC=1;AF=0.917;AN=2;DP=231;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:113,0,229:0,7,0,4
chr1	167886835	.	CAAA	CA,CAAAA,CAA,C	315.22	PASS	AC=1,0,0,0;AF=0.136,0.091,0.258,0.03;AN=2;DP=3434;set=variant-filterInvariant2-filterInvariant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant40-filterInvariant43	GT:DP:GQ:SB	0/1:92:99:38,30,24,0
chr1	167906239	.	A	C	2896.11	PASS	AC=2;AF=1;AN=2;DP=3745;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,92:93:99:2927,268,0:1,0,49,43
chr1	168013850	.	T	C	1015.15	PASS	AC=1;AF=0.658;AN=2;DP=1307;MQ=60;set=variant-variant2-variant4-variant7-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant35-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:776,0,1153:23,23,21,12
chr1	168025538	.	T	C	61.77	PASS	AC=1;AF=0.591;AN=2;DP=1506;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:392,0,499:11,10,6,10
chr1	168025628	.	G	A	164.93	PASS	AC=1;AF=0.583;AN=2;DP=733;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,9:39:99:259,0,859:14,16,0,9
chr1	168025664	.	C	A	72.27	PASS	AC=1;AF=0.592;AN=2;DP=501;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,6:31:99:169,0,697:10,15,0,6
chr1	168035104	.	G	C	55.31	PASS	AC=1;AF=0.976;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:357,0,187:1,5,0,9
chr1	168106716	.	T	C	579.6	PASS	AC=1;AF=0.872;AN=2;DP=3665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1306,0,1466:20,33,23,27
chr1	168165767	.	CTT	CT,C	577.41	PASS	AC=1,0;AF=0.613,0.016;AN=2;DP=1465;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant25-variant26-variant28-variant29-filterInvariant31-variant34-variant36-variant37-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:60:99:27,18,7,8
chr1	168200733	.	T	C	830.27	PASS	AC=1;AF=0.7;AN=2;DP=1618;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:544,0,819:20,8,16,6
chr1	168206118	.	GTTTAA	G	424.7	PASS	AC=1;AF=0.694;AN=2;DP=835;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:222,0,676:2,8,0,6
chr1	168208308	.	T	C	1152.78	PASS	AC=1;AF=0.694;AN=2;DP=4081;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,81:147:99:1927,0,1473:33,33,43,38
chr1	168212234	.	G	A	1058.32	PASS	AC=1;AF=0.694;AN=2;DP=2995;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,58:108:99:1449,0,1180:24,26,27,31
chr1	168215499	.	C	A	6203.99	PASS	AC=1;AF=0.689;AN=2;DP=9990;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,160:353:99:5997,0,8521:105,88,78,82
chr1	168215505	.	A	G	6124.26	PASS	AC=1;AF=0.694;AN=2;DP=9938;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:198,163:361:99:6018,0,8713:109,89,79,84
chr1	168215575	.	G	A	5035.52	PASS	AC=1;AF=0.694;AN=2;DP=12462;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:228,187:415:99:4380,0,5813:108,120,97,90
chr1	168260185	.	T	G	139.59	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.055;QD=8.21;ReadPosRankSum=-2.161;SOR=0.437;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:168,0,293:8,3,4,2
chr1	168262289	.	A	G	815.1	PASS	AC=1;AF=0.756;AN=2;DP=1109;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:599,0,653:8,1,11,4
chr1	168262299	.	C	T	869.6	PASS	AC=1;AF=0.688;AN=2;DP=1105;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:599,0,653:8,1,11,4
chr1	168262527	.	G	T	189.73	PASS	AC=1;AF=0.5;AN=2;DP=208;MQ=60;set=variant-variant2-variant15-variant17-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:812,0,750:8,19,14,19
chr1	168274201	.	G	A	787.99	PASS	AC=1;AF=0.744;AN=2;DP=4242;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,81:137:99:2013,0,1366:30,26,41,40
chr1	168278264	.	G	A	440.3	PASS	AC=1;AF=0.786;AN=2;DP=1575;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:608,0,919:6,24,5,16
chr1	168282261	.	T	A	2210.78	PASS	AC=1;AF=0.64;AN=2;DP=3517;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant28-variant30-variant31-variant32-variant34-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,64:149:99:1676,0,2383:33,52,27,37
chr1	168283158	.	AAAAG	A	810.04	PASS	AC=1;AF=0.646;AN=2;DP=841;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant23-variant25-variant28-variant30-variant31-variant32-variant34-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:395,0,875:13,5,9,2
chr1	168510122	.	T	A	119.28	PASS	AC=1;AF=0.671;AN=2;DP=1268;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:570,0,806:21,3,18,0
chr1	168511155	.	T	C	634.81	PASS	AC=1;AF=0.679;AN=2;DP=4209;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,60:137:99:1497,0,1939:45,32,39,21
chr1	168513067	.	C	A,T	1717.89	PASS	AC=1,0;AF=0.5,0.031;AN=2;DP=2642;set=variant2-variant4-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant21-variant33-variant35-variant37-variant38-variant40-variant41	GT:DP:GQ:SB	0/1:198:99:73,50,33,42
chr1	168513109	.	A	G	1587.77	PASS	AC=1;AF=0.533;AN=2;DP=2595;set=variant2-variant4-variant8-variant9-variant13-variant14-variant15-variant18-variant21-variant33-variant35-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:139,61:200:99:1219,0,3149:71,68,22,39
chr1	168545758	.	C	T	160.19	PASS	AC=1;AF=0.697;AN=2;DP=546;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:239,0,461:13,2,6,2
chr1	168545821	.	G	A	820.25	PASS	AC=1;AF=0.5;AN=2;DP=728;FractionInformativeReads=1;set=variant4-variant9-variant12-variant13-variant14-variant15-variant31-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,24:72:99:516,0,1321:33,15,16,8
chr1	168545864	.	A	G	1349.89	PASS	AC=1;AF=0.542;AN=2;DP=1349;set=variant2-variant4-variant8-variant9-variant13-variant14-variant15-variant21-variant23-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,40:128:99:912,0,2098:52,36,25,15
chr1	168545949	.	G	A	1485.07	PASS	AC=1;AF=0.775;AN=2;DP=6571;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,152:174:99:4017,0,163:7,15,78,74
chr1	168549422	.	C	T	599.05	PASS	AC=1;AF=0.731;AN=2;DP=7255;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,116:232:99:2779,0,2787:54,62,52,64
chr1	168549491	.	G	A	1702.17	PASS	AC=1;AF=0.5;AN=2;DP=290;set=variant15-variant21	GT:AD:DP:GQ:PL:SB	0/1:77,66:143:99:1730,0,1752:33,44,22,44
chr1	168665747	.	C	CT	1052.4	PASS	AC=1;AF=0.75;AN=2;DP=2983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,51:91:99:1742,0,1327:23,17,23,28
chr1	168665974	.	T	C	79.93	PASS	AC=1;AF=0.75;AN=2;DP=414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:72:120,0,72:0,2,0,3
chr1	168670140	.	TGTGTGG	T	382.87	PASS	AC=1;AF=0.593;AN=2;DP=752;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:539,0,1223:18,2,13,3
chr1	168698173	.	C	T	874.26	PASS	AC=1;AF=0.673;AN=2;DP=2479;MQ=60;set=variant-variant5-variant6-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,50:101:99:1308,0,1485:33,18,35,15
chr1	169075040	.	C	G	609.79	PASS	AC=1;AF=0.571;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant15-variant20-variant22-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:486,0,823:14,17,9,14
chr1	169075857	.	C	CCCG,CCCGCCGCCG,CCCGCCG	379.84	PASS	AC=2,0,0;AF=0.75,0.05,0.033;AN=2;DP=260;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	1/1:10:44:0,0,8,2
chr1	169080837	.	C	T	186.63	PASS	AC=1;AF=0.833;AN=2;DP=1325;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:378,0,749:7,18,3,11
chr1	169101257	.	AT	ATT,ATTTTTTTTTT,A,ATTTT	908.41	PASS	AC=1,0,0,0;AF=0.486,0.014,0.057,0.014;AN=2;DP=6434;set=variant-variant3-variant4-variant5-variant7-filterInvariant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant27-variant28-variant29-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:155:99:20,50,36,49
chr1	169160036	.	CTTTTTTTTTTTTTTT	C,CT,CTTT,CTTTT,CTTTTTTTTTTTTT	296.84	PASS	AC=0,1,0,0,0;AF=0.056,0.056,0.278,0.167,0.111;AN=2;DP=192;set=variant7-variant15-variant16-variant20-variant22-variant28-variant29-variant40-variant43	GT:DP:GQ:SB	0/2:13:99:1,7,0,5
chr1	169204219	.	G	A	368.43	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:397,0,375:9,4,11,6
chr1	169216412	.	C	G	222.17	PASS	AC=2;AF=1;AN=2;DP=1043;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:855,69,0:0,0,6,17
chr1	169272451	.	A	T	781.25	PASS	AC=2;AF=0.989;AN=2;DP=739;FractionInformativeReads=1;MQ=60;MQRankSum=0.366;ReadPosRankSum=0.805;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:891,60,0:0,0,3,17
chr1	169272453	.	G	A	781.25	PASS	AC=2;AF=0.989;AN=2;DP=700;FractionInformativeReads=1;MQ=60;MQRankSum=0.19;ReadPosRankSum=-1.822;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:60:891,60,0:0,0,3,16
chr1	169337376	.	C	T	741.2	PASS	AC=1;AF=0.658;AN=2;DP=2667;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,43:84:99:1086,0,1057:18,23,22,21
chr1	169337638	.	C	T	200.7	PASS	AC=1;AF=0.658;AN=2;DP=772;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:413,0,152:3,5,2,9
chr1	169337677	.	A	ATTG	166.66	PASS	AC=1;AF=0.667;AN=2;DP=377;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:78:286,0,78:0,2,0,7
chr1	169338520	.	A	AT,ATT,ATTT	80.75	PASS	AC=0,1,0;AF=0.676,0.059,0.015;AN=2;DP=356;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:13:99:3,2,6,2
chr1	169339031	.	G	A	238.61	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant20	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:267,0,351:0,9,0,7
chr1	169345704	.	G	A	574.21	PASS	AC=1;AF=0.658;AN=2;DP=1970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:754,0,859:19,14,22,5
chr1	169349608	.	C	CTA	160.6	PASS	AC=1;AF=0.744;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:336,0,579:13,1,8,1
chr1	169349914	.	G	T	1100.09	PASS	AC=1;AF=0.5;AN=2;DP=296;MQ=60;set=variant15-variant16-variant20-variant29	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1128,0,882:6,25,13,28
chr1	169351596	.	A	G	302.6	PASS	AC=1;AF=0.75;AN=2;DP=1540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:483,0,802:13,17,9,11
chr1	169356833	.	G	T	376.01	PASS	AC=1;AF=0.75;AN=2;DP=1738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:719,0,907:17,15,16,13
chr1	169364014	.	C	G	261.88	PASS	AC=1;AF=0.778;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:99,0,245:6,2,3,0
chr1	169391154	.	A	G	1013.41	PASS	AC=1;AF=0.75;AN=2;DP=3255;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:927,0,1148:26,23,19,23
chr1	169394226	.	A	G	723.97	PASS	AC=1;AF=0.791;AN=2;DP=2542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,31:89:99:705,0,1440:27,31,11,20
chr1	169396620	.	C	G	466.34	PASS	AC=1;AF=0.5;AN=2;DP=168;MQ=60;set=variant15-variant16-variant20-variant29	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:495,0,752:18,14,9,9
chr1	169434120	.	T	C	1239.01	PASS	AC=1;AF=0.55;AN=2;DP=1014;MQ=60;set=variant11-variant15-variant16-variant19-variant20-variant28-variant29-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,71:152:99:1933,0,2197:31,50,20,51
chr1	169435027	.	C	T	4409.17	PASS	AC=2;AF=1;AN=2;DP=5149;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=0.679;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4649,429,0:0,0,58,85
chr1	169484552	.	T	G	732.26	PASS	AC=1;AF=0.667;AN=2;DP=568;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:257,0,214:7,1,7,2
chr1	169489512	.	A	G	189.18	PASS	AC=1;AF=0.548;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:313,0,224:6,2,8,4
chr1	169489585	.	T	C	456.32	PASS	AC=1;AF=0.548;AN=2;DP=818;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:742,0,767:19,9,17,10
chr1	169492676	.	C	T	857.2	PASS	AC=1;AF=0.548;AN=2;DP=1342;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,45:69:99:1391,0,568:7,17,14,31
chr1	169494196	.	C	T	481.24	PASS	AC=1;AF=0.64;AN=2;DP=563;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:461,0,533:4,14,1,13
chr1	169498834	.	T	C	529.23	PASS	AC=1;AF=0.966;AN=2;DP=1339;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:381,0,405:11,2,10,5
chr1	169498975	.	T	C	2451.6	PASS	AC=1;AF=0.667;AN=2;DP=2493;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,58:121:99:1292,0,1472:33,30,30,28
chr1	169499190	.	A	G	151.77	PASS	AC=1;AF=0.66;AN=2;DP=223;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,267:0,7,0,5
chr1	169499951	.	C	T	837.23	PASS	AC=1;AF=0.548;AN=2;DP=1839;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1264,0,1083:27,18,27,21
chr1	169505557	.	CT	C	46.09	PASS	AC=1;AF=0.6;AN=2;DP=135;MQ=60;set=variant2-variant3-variant5-variant6-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:131,0,125:6,0,6,0
chr1	169510380	.	G	A	2999.82	PASS	AC=1;AF=0.553;AN=2;DP=6432;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant27-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:143,169:312:99:4325,0,3922:62,81,75,94
chr1	169510524	.	A	G	9631.44	PASS	AC=1;AF=0.674;AN=2;DP=6779;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:206,185:391:99:4985,0,4910:103,103,92,93
chr1	169511555	.	T	C	1421.72	PASS	AC=1;AF=0.548;AN=2;DP=3429;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:115,92:207:99:2408,0,2830:60,55,52,40
chr1	169511734	.	T	C	2444.1	PASS	AC=1;AF=0.548;AN=2;DP=3890;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:106,100:206:99:2695,0,2763:59,47,48,52
chr1	169511755	.	T	C	2259.47	PASS	AC=1;AF=0.548;AN=2;DP=3908;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:112,103:215:99:2575,0,2989:65,47,48,55
chr1	169512027	.	T	C	934.71	PASS	AC=1;AF=0.548;AN=2;DP=1927;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,49:102:99:1413,0,1549:30,23,30,19
chr1	169512093	.	A	G	517.18	PASS	AC=1;AF=0.548;AN=2;DP=2349;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,68:140:99:1723,0,1897:42,30,36,32
chr1	169512120	.	G	A	467.67	PASS	AC=1;AF=0.548;AN=2;DP=2371;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,66:135:99:1674,0,1702:39,30,36,30
chr1	169512497	.	C	A	719.86	PASS	AC=1;AF=0.548;AN=2;DP=967;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,31:49:99:845,0,434:5,13,10,21
chr1	169512524	.	C	T	685.64	PASS	AC=1;AF=0.654;AN=2;DP=843;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant39-variant40-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:574,0,359:4,10,4,14
chr1	169512562	.	T	C	377.81	PASS	AC=1;AF=0.579;AN=2;DP=339;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant40	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:93:288,0,93:0,3,2,7
chr1	169512594	.	G	A	320.31	PASS	AC=1;AF=0.579;AN=2;DP=172;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:123,0,34:0,1,0,3
chr1	169513436	.	C	A	287.8	PASS	AC=1;AF=0.525;AN=2;DP=428;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant32-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:425,0,352:9,3,8,8
chr1	169515874	.	T	A	399.31	PASS	AC=1;AF=0.529;AN=2;DP=496;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant18-variant22-variant26-variant32-variant34-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:316,0,591:5,16,3,9
chr1	169515916	.	G	A	133.71	PASS	AC=1;AF=0.5;AN=2;DP=184;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant9-variant13-variant14-variant15-variant18-variant22-variant26-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:281,0,628:0,11,1,7
chr1	169519049	.	T	C	4195.74	PASS	AC=2;AF=1;AN=2;DP=5894;FS=0;MQ=60;MQRankSum=-0.284;ReadPosRankSum=1.365;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5001,479,0:0,0,95,65
chr1	169525766	.	T	C	515.54	PASS	AC=1;AF=0.719;AN=2;DP=849;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:700,0,448:13,2,18,3
chr1	169525808	.	G	A	1070.75	PASS	AC=1;AF=0.565;AN=2;DP=1288;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,36:62:99:1041,0,739:20,6,26,10
chr1	169551682	.	T	C	773.47	PASS	AC=1;AF=0.568;AN=2;DP=904;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant31-variant32-variant34-variant35-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,16:47:99:370,0,670:14,17,8,8
chr1	169560727	.	T	TA,TAA,TAAA	497.04	PASS	AC=1,0,0;AF=0.375,0.219,0.016;AN=2;DP=1488;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:64:99:17,23,9,15
chr1	169564167	.	G	C	366.1	PASS	AC=1;AF=0.568;AN=2;DP=350;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant31-variant32-variant34-variant35-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:472,0,342:3,9,4,11
chr1	169566313	.	C	T	2482.45	PASS	AC=1;AF=0.744;AN=2;DP=4949;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,81:160:99:1791,0,1903:36,43,39,42
chr1	169572545	.	CTGTGTGTG	CTGTGTGTGTG,C,CTGTGTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTG,CTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTG,CTCTGTGTGTGTGTGTGTGTG	34.15	PASS	AC=1,1,0,0,0,0,0,0,0,0;AF=0.114,0.357,0.129,0.071,0.043,0.029,0.029,0.014,0.029,0.014;AN=2;DP=1195;set=filterInvariant-variant3-variant4-filterInvariant9-variant10-variant11-variant13-variant7-variant15-variant8-variant17-variant12-variant21-variant23-variant25-variant19-variant26-variant27-variant20-variant28-variant29-filterInvariant30-variant22-variant31-variant32-variant34-variant36-variant37-variant2-variant38-variant35-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	2/1:30:99:0,1,8,21
chr1	169572555	.	G	C	301.54	PASS	AC=1;AF=0.543;AN=2;DP=753;set=variant3-variant4-variant6-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:783,0,765:4,14,7,13
chr1	169572557	.	G	C	945.4	PASS	AC=1;AF=0.568;AN=2;DP=696;set=variant3-variant4-variant6-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant31-variant32-variant34-variant35-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:329,0,767:4,15,4,11
chr1	169659779	.	A	AT,AC	63.12	PASS	AC=2,0;AF=0.75,0.042;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant10-variant13-variant15-variant17-variant21-variant26-variant30-variant32-variant41-variant43	GT:DP:GQ:SB	1/1:4:12:0,0,4,0
chr1	169660002	.	G	T	435.3	PASS	AC=2;AF=0.667;AN=2;DP=921;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1526,130,0:0,0,35,9
chr1	169698825	.	T	G	1549.79	PASS	AC=2;AF=0.857;AN=2;DP=5220;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4524,426,0:0,0,68,74
chr1	169698921	.	C	T	938.93	PASS	AC=2;AF=0.685;AN=2;DP=1726;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,85:86:99:2610,221,0:1,0,28,57
chr1	169699819	.	G	A	342.57	PASS	AC=2;AF=0.685;AN=2;DP=1631;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1889,165,0:0,0,16,39
chr1	169762807	.	T	G	2452.51	PASS	AC=2;AF=0.556;AN=2;DP=1510;MQ=60;set=variant11-variant13-variant15-variant25-variant27-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:7017,585,0:0,0,136,59
chr1	169763046	.	GA	G,GAA	32.08	PASS	AC=1,0;AF=0.484,0.031;AN=2;DP=3705;set=filterInvariant-variant3-filterInvariant4-variant5-variant7-filterInvariant9-variant10-variant11-filterInvariant12-variant14-filterInvariant15-variant18-filterInvariant19-filterInvariant21-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-filterInvariant31-filterInvariant32-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:94:99:23,55,3,13
chr1	169763139	.	T	C	285.87	PASS	AC=2;AF=0.814;AN=2;DP=764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:919,69,0:0,0,0,23
chr1	169764568	.	C	G	446.26	PASS	AC=2;AF=0.814;AN=2;DP=2435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2469,240,0:0,0,40,40
chr1	169764992	.	T	TG	2629.44	PASS	AC=2;AF=1;AN=2;DP=3251;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3701,277,0:0,0,35,56
chr1	169768033	.	T	C	1675.17	PASS	AC=2;AF=0.75;AN=2;DP=5945;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:4926,506,0:0,0,93,76
chr1	169768080	.	C	A	1566.81	PASS	AC=2;AF=0.75;AN=2;DP=7576;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:5824,577,0:0,0,98,95
chr1	169795214	.	CT	C	253.15	PASS	AC=2;AF=0.75;AN=2;DP=1285;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:900,90,0:0,0,13,17
chr1	169795276	.	A	C	74.49	PASS	AC=2;AF=0.821;AN=2;DP=418;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:406,30,0:0,0,1,9
chr1	169797127	.	G	A	2060.05	PASS	AC=2;AF=0.556;AN=2;DP=850;MQ=60;set=variant11-variant13-variant15-variant25-variant27-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3970,279,0:0,0,0,93
chr1	169819605	.	A	G	523.92	PASS	AC=2;AF=0.75;AN=2;DP=1720;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,47:48:97:1485,97,0:0,1,15,32
chr1	169823296	.	G	GCTTGA,GCTTGACTTGA	1479.22	PASS	AC=2,0;AF=0.636,0.023;AN=2;DP=693;MQ=60;set=variant2-variant3-variant4-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant27-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	1/1:30:99:0,0,18,12
chr1	169823718	.	T	C	1903.15	PASS	AC=2;AF=0.75;AN=2;DP=5942;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5403,545,0:0,0,80,102
chr1	169831993	.	A	G	398.44	PASS	AC=2;AF=0.814;AN=2;DP=1665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1498,135,0:0,0,14,31
chr1	169833822	.	T	C	235.4	PASS	AC=2;AF=0.814;AN=2;DP=1131;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1070,78,0:0,0,0,26
chr1	169835950	.	A	C	118.19	PASS	AC=2;AF=0.838;AN=2;DP=244;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:259,18,0:0,0,4,2
chr1	169839595	.	A	G	193.47	PASS	AC=2;AF=0.611;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant15-variant25-variant27-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:629,48,0:0,0,3,13
chr1	169847683	.	G	A	198.09	PASS	AC=2;AF=0.821;AN=2;DP=581;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:56:608,56,0:0,0,15,4
chr1	169890574	.	T	A	6921.45	PASS	AC=2;AF=0.929;AN=2;DP=8574;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,235:235:99:7114,700,0:0,0,125,110
chr1	169890933	.	A	G	2525.83	PASS	AC=2;AF=0.929;AN=2;DP=3761;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3430,317,0:0,0,41,65
chr1	169891056	.	CT	C	249.25	PASS	AC=2;AF=0.936;AN=2;DP=632;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:543,57,0:0,0,6,13
chr1	169941761	.	A	T	736.17	PASS	AC=2;AF=0.939;AN=2;DP=772;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:648,60,0:0,0,6,14
chr1	169947146	.	C	CA,CAA	2062.53	PASS	AC=2,0;AF=0.905,0.012;AN=2;DP=2037;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:47:91:1,1,32,13
chr1	169951748	.	A	G	359.74	PASS	AC=2;AF=0.939;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:481,36,0:0,0,11,1
chr1	169952385	.	G	T	755.04	PASS	AC=2;AF=0.929;AN=2;DP=833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:872,78,0:0,0,20,6
chr1	170001151	.	ATACTCATT	A	773.7	PASS	AC=2;AF=0.591;AN=2;DP=591;MQ=60;set=variant8-variant11-variant13-variant15-variant18-variant23-variant24-variant25-variant27-variant35-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2492,169,0:0,0,14,42
chr1	170004508	.	A	T	58.54	PASS	AC=2;AF=0.667;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant23-variant24-variant25-variant26-variant27-variant29-variant35-variant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:313,24,0:0,0,8,0
chr1	170015700	.	T	C	306.75	PASS	AC=2;AF=0.591;AN=2;DP=180;MQ=60;set=variant8-variant11-variant13-variant15-variant18-variant23-variant24-variant25-variant27-variant35-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:984,69,0:0,0,23,0
chr1	170037279	.	C	A	3668.14	PASS	AC=2;AF=0.591;AN=2;DP=2680;MQ=60;set=variant8-variant11-variant13-variant15-variant18-variant23-variant24-variant25-variant27-variant35-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,300:300:99:9270,899,0:0,0,148,152
chr1	170037624	.	C	T	2036.45	PASS	AC=2;AF=0.591;AN=2;DP=1973;MQ=60;set=variant8-variant11-variant13-variant15-variant18-variant23-variant24-variant25-variant27-variant35-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6518,652,0:0,0,122,96
chr1	170043904	.	G	C	415.48	PASS	AC=2;AF=0.763;AN=2;DP=1236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1236,126,0:0,0,15,27
chr1	170115156	.	G	A	851.33	PASS	AC=2;AF=0.589;AN=2;DP=1843;MQ=60;set=variant-variant3-variant8-variant9-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1861,164,0:0,0,36,19
chr1	170135510	.	T	C	479.86	PASS	AC=2;AF=0.8;AN=2;DP=596;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:765,63,0:0,0,17,4
chr1	170501167	.	T	C	489.75	PASS	AC=1;AF=0.6;AN=2;DP=284;MQ=60;set=variant3-variant4-variant10-variant11-variant12-variant13-variant15-variant23-variant31-variant32	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:289,0,615:15,8,5,8
chr1	170501385	.	A	C	2864.52	PASS	AC=2;AF=1;AN=2;DP=6948;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5433,552,0:0,0,103,82
chr1	170501456	.	C	T	2940.5	PASS	AC=1;AF=0.636;AN=2;DP=4815;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,88:189:99:2112,0,2282:47,54,40,48
chr1	170502517	.	A	G	418.36	PASS	AC=2;AF=1;AN=2;DP=466;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:353,27,0:0,0,7,2
chr1	170508755	.	G	GT	822.37	PASS	AC=1;AF=0.625;AN=2;DP=338;MQ=60;set=variant3-variant4-variant10-variant11-variant12-variant15-variant23-variant32	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:525,0,471:4,15,2,19
chr1	170511604	.	T	C	675.27	PASS	AC=1;AF=0.577;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant23-variant31-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:743,0,559:15,6,20,4
chr1	170514229	.	G	A	1819.13	PASS	AC=1;AF=0.636;AN=2;DP=1539;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:803,0,1144:27,7,19,6
chr1	170521376	.	G	A	1121.05	PASS	AC=1;AF=0.65;AN=2;DP=2554;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,66:107:99:1877,0,1021:25,16,34,32
chr1	170632574	.	AG	A	686.09	PASS	AC=2;AF=1;AN=2;DP=1067;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1256,113,0:0,0,16,22
chr1	170632622	.	CTT	CT,C	453.66	PASS	AC=2,0;AF=0.988,0.012;AN=2;DP=658;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:19:28:0,1,8,10
chr1	170633066	.	C	G	1289.42	PASS	AC=2;AF=1;AN=2;DP=2018;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;ReadPosRankSum=0.042;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1036,105,0:0,0,16,19
chr1	170633111	.	T	G	1661.49	PASS	AC=2;AF=1;AN=2;DP=1723;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1686,114,0:0,0,18,20
chr1	170633119	.	T	G	1636.77	PASS	AC=2;AF=1;AN=2;DP=1701;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1665,111,0:0,0,17,20
chr1	170633142	.	C	G	1391.5	PASS	AC=2;AF=1;AN=2;DP=1470;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1170,78,0:0,0,12,14
chr1	170633173	.	A	G	814.9	PASS	AC=2;AF=1;AN=2;DP=1174;FS=0;MQ=60;MQRankSum=1.664;ReadPosRankSum=1.597;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:733,69,0:0,0,13,10
chr1	170633186	.	AT	A,ATT	370.38	PASS	AC=0,2;AF=0.548,0.286;AN=2;DP=1048;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:20:60:0,0,11,9
chr1	170633229	.	C	CCTCTCTCTCTCTCTCTCTCT,CCTCTCTCTCTCT,CCTCTCTCTCTCTCT,CCTCTCTCTCTCTCTCTCTCTCT,CCTCTCTCTCT,CCTCTCTCTCTCTCTCTCTCTCTCT,CCTCTCTCTCTCTCTCTCT	211.03	PASS	AC=0,0,0,2,0,0,0;AF=0.162,0.382,0.029,0.044,0.044,0.029,0.029;AN=2;DP=778;set=variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-filterInvariant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:3:28:0,0,2,1
chr1	170696474	.	A	C	2175.62	PASS	AC=2;AF=0.886;AN=2;DP=3190;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3204,315,0:0,0,47,58
chr1	170705618	.	A	C	2179.71	PASS	AC=2;AF=1;AN=2;DP=2069;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2209,210,0:0,0,30,40
chr1	170705685	.	CTATATATATATA	CTA,CTATATA,CTATA,C,CTATATATA,CTATATATATA	2009.71	PASS	AC=0,1,1,0,0,0;AF=0.167,0.571,0.083,0.024,0.012,0.012;AN=2;DP=1299;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/2:24:99:0,0,6,18
chr1	170708637	.	C	G	901.64	PASS	AC=2;AF=0.886;AN=2;DP=1132;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1227,99,0:0,0,6,27
chr1	170927570	.	CT	C,CTT	808.36	PASS	AC=2,0;AF=0.403,0.129;AN=2;DP=3484;set=variant-filterInvariant2-filterInvariant3-filterInvariant6-filterInvariant7-variant10-variant11-variant12-variant13-variant15-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-filterInvariant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-variant42-variant44	GT:DP:GQ:SB	1/1:134:99:5,4,58,67
chr1	170959029	.	C	T	2156.77	PASS	AC=1;AF=0.5;AN=2;DP=3075;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant13-variant15-variant18-variant24-variant26-variant28-variant29-variant31-variant34-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:110,65:175:99:1435,0,2787:56,54,37,28
chr1	170959088	.	C	T	2387.65	PASS	AC=1;AF=0.5;AN=2;DP=3529;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant13-variant15-variant18-variant24-variant26-variant28-variant29-variant31-variant34-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:133,81:214:99:1861,0,3365:68,65,43,38
chr1	170959308	.	G	A	253.21	PASS	AC=1;AF=0.5;AN=2;DP=310;MQ=60;set=variant-variant2-variant4-variant10-variant13-variant15-variant24-variant26-variant28-variant29-variant31-variant34-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:479,0,441:0,12,5,12
chr1	170993444	.	G	GGT,T	156.36	PASS	AC=2,0;AF=0.707,0.034;AN=2;DP=268;set=variant2-variant4-variant8-variant9-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	1/1:14:8:1,0,10,3
chr1	171033543	.	C	T	44.12	PASS	AC=1;AF=0.563;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant15-variant24-variant29-variant31-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:302,0,258:1,7,3,8
chr1	171061990	.	A	G	1110.12	PASS	AC=1;AF=0.586;AN=2;DP=2148;MQ=60;set=variant3-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,38:97:99:794,0,1490:24,35,17,21
chr1	171076966	.	G	A	1534.38	PASS	AC=1;AF=0.611;AN=2;DP=3136;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,52:141:99:1261,0,2225:40,49,21,31
chr1	171077198	.	G	A	2219.64	PASS	AC=1;AF=0.597;AN=2;DP=4940;MQ=60;set=variant3-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,98:187:99:2526,0,2278:49,40,58,40
chr1	171077372	.	C	G	1697.4	PASS	AC=1;AF=0.55;AN=2;DP=2900;MQ=60;set=variant6-variant9-variant10-variant11-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant28-variant29-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,84:174:99:2146,0,2249:44,46,37,47
chr1	171112490	.	C	T	578.15	PASS	AC=1;AF=0.588;AN=2;DP=1386;MQ=60;set=variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:779,0,680:2,19,7,19
chr1	171130236	.	G	A	1613.1	PASS	AC=1;AF=0.5;AN=2;DP=1373;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant16-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,93:178:99:2246,0,2255:52,33,51,42
chr1	171130346	.	G	A	2055.91	PASS	AC=1;AF=0.5;AN=2;DP=2194;MQ=60;set=variant-variant6-variant9-variant10-variant12-variant15-variant16-variant18-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:121,112:233:99:2831,0,3312:65,56,62,50
chr1	171130539	.	G	C	1332.17	PASS	AC=1;AF=0.5;AN=2;DP=1503;MQ=60;set=variant-variant6-variant9-variant10-variant12-variant15-variant16-variant18-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,81:161:99:2152,0,2115:30,50,27,54
chr1	171130598	.	CACACA	C	836.45	PASS	AC=1;AF=0.556;AN=2;DP=1180;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:819,0,1443:10,15,4,18
chr1	171155103	.	C	T	447.77	PASS	AC=1;AF=0.714;AN=2;DP=1086;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:592,0,416:5,10,3,16
chr1	171168302	.	G	C	99.34	PASS	AC=1;AF=0.697;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:270,0,142:4,2,7,3
chr1	171168584	.	C	T	1764.53	PASS	AC=1;AF=0.633;AN=2;DP=2674;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,50:116:99:1849,0,3682:26,40,20,30
chr1	171168585	.	A	G	1764.53	PASS	AC=1;AF=0.686;AN=2;DP=3120;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,48:112:99:1849,0,3682:25,39,19,29
chr1	171174531	.	A	G	906.57	PASS	AC=1;AF=0.591;AN=2;DP=955;MQ=60;set=variant-variant10-variant12-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,67:129:99:1578,0,1621:35,27,34,33
chr1	171178257	.	C	CT	318.21	PASS	AC=1;AF=0.583;AN=2;DP=468;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:474,0,627:14,11,10,10
chr1	171178490	.	C	T	1536.44	PASS	AC=1;AF=0.583;AN=2;DP=1277;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1875,0,1667:29,36,33,33
chr1	171179351	.	A	T	1188.67	PASS	AC=1;AF=0.583;AN=2;DP=1038;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,47:111:99:1255,0,1735:34,30,23,24
chr1	171217691	.	C	A	305.1	PASS	AC=1;AF=0.583;AN=2;DP=306;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:304,0,374:5,8,6,7
chr1	171227216	.	T	C	1699.75	PASS	AC=1;AF=0.558;AN=2;DP=2836;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:84,56:140:99:1441,0,2332:38,46,27,29
chr1	171227487	.	A	G	1159.94	PASS	AC=1;AF=0.5;AN=2;DP=1021;MQ=60;set=variant4-variant5-variant7-variant11-variant13-variant14-variant15-variant17-variant23-variant25-variant26-variant34-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:830,0,1029:17,22,12,23
chr1	171250044	.	C	T	1055.92	PASS	AC=1;AF=0.5;AN=2;DP=1714;MQ=60;set=variant4-variant5-variant7-variant11-variant13-variant14-variant15-variant17-variant23-variant26-variant34-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:75,75:150:99:1775,0,1688:43,32,43,32
chr1	171251509	.	G	T	394.29	PASS	AC=1;AF=0.5;AN=2;DP=516;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant11-variant13-variant14-variant15-variant17-variant23-variant26-variant34-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:640,0,741:10,16,8,16
chr1	171252287	.	A	G	678.84	PASS	AC=1;AF=0.5;AN=2;DP=914;MQ=60;set=variant4-variant5-variant7-variant11-variant14-variant15-variant17-variant23-variant26-variant34-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:712,0,743:17,17,18,16
chr1	171252404	.	TAAAAAAA	T	81.03	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=3.979;FractionInformativeReads=0.353;MQ=60;MQRankSum=0.406;QD=4.77;ReadPosRankSum=1.537;SOR=0.838;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:118,0,138:0,3,2,1
chr1	171252442	.	T	C	187.85	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=0.857;MQ=60;MQRankSum=0.736;QD=26.84;ReadPosRankSum=0.736;SOR=0.941;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:17:216,0,17:0,1,1,4
chr1	171252449	.	G	GA	178.81	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=0.875;MQ=60;MQRankSum=0.742;QD=22.35;ReadPosRankSum=0.742;SOR=1.179;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:17:216,0,17:0,1,1,5
chr1	171254890	.	C	T	3029.75	PASS	AC=1;AF=0.538;AN=2;DP=4009;set=variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:85,111:196:99:3131,0,2280:59,26,79,32
chr1	171283477	.	T	TA,TAA	1397.48	PASS	AC=1,0;AF=0.462,0.038;AN=2;DP=1847;MQ=60;set=variant4-variant5-variant7-variant11-variant14-variant15-variant17-variant23-variant26-variant34-variant37-variant38-variant39	GT:DP:GQ:SB	0/1:152:99:40,38,35,39
chr1	171292017	.	A	G	626.28	PASS	AC=1;AF=0.5;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant11-variant14-variant15-variant17-variant23-variant26-variant34-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:35,48:83:99:1352,0,898:23,12,33,15
chr1	171301033	.	C	G	1008.33	PASS	AC=1;AF=0.588;AN=2;DP=1906;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:752,0,1123:5,22,7,22
chr1	171301043	.	GA	GAA,G	899.31	PASS	AC=1,0;AF=0.581,0.016;AN=2;DP=1403;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:37:99:2,11,5,19
chr1	171303925	.	C	T	1054.15	PASS	AC=1;AF=0.588;AN=2;DP=4308;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,83:167:99:1774,0,2105:38,46,37,46
chr1	171311003	.	A	C	1248.56	PASS	AC=1;AF=0.649;AN=2;DP=4565;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,74:137:99:1895,0,1462:33,30,36,38
chr1	171487092	.	TG	T	329.5	PASS	AC=2;AF=0.694;AN=2;DP=383;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:337,27,0:0,0,0,9
chr1	171491264	.	T	A	517.88	PASS	AC=2;AF=0.703;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:553,45,0:0,0,12,3
chr1	171496875	.	A	G	79.66	PASS	AC=1;AF=0.556;AN=2;DP=248;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant15-variant21-variant35-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:339,0,508:12,6,9,5
chr1	171496895	.	A	G	1134.93	PASS	AC=2;AF=0.86;AN=2;DP=1587;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1029,102,0:0,0,20,14
chr1	171509058	.	G	A	668.95	PASS	AC=2;AF=0.86;AN=2;DP=971;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:80:920,80,0:0,0,21,6
chr1	171509327	.	G	A	3422.33	PASS	AC=2;AF=0.86;AN=2;DP=5373;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:3950,403,0:0,0,68,68
chr1	171511039	.	C	G	2780.26	PASS	AC=2;AF=0.86;AN=2;DP=4353;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4399,417,0:0,0,69,70
chr1	171511442	.	A	G	769.53	PASS	AC=2;AF=0.697;AN=2;DP=968;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1280,102,0:0,0,7,27
chr1	171514731	.	C	G	984.04	PASS	AC=2;AF=0.86;AN=2;DP=1735;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1267,126,0:0,0,19,23
chr1	171514848	.	TTTTATTTA	TTTTATTTATTTA,T	51.95	PASS	AC=1,0;AF=0.708,0.167;AN=2;DP=125;FS=0;MQ=60;set=variant3-variant7-variant15-variant21-variant25-variant27-variant32-variant34-variant35-variant38-variant41-variant42	GT:DP:GQ:SB	0/1:3:31:0,1,0,2
chr1	171519487	.	A	C	888.29	PASS	AC=2;AF=0.86;AN=2;DP=1163;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1209,114,0:0,0,11,27
chr1	171526570	.	G	A	1493.54	PASS	AC=2;AF=0.86;AN=2;DP=9043;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:6854,676,0:0,0,111,115
chr1	171526910	.	G	A	3477.82	PASS	AC=1;AF=0.553;AN=2;DP=1746;MQ=60;set=variant3-variant6-variant8-variant13-variant15-variant19-variant20-variant23-variant25-variant30-variant31-variant32-variant33-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,66:98:99:1609,0,630:13,19,28,38
chr1	171527322	.	A	G	656.7	PASS	AC=2;AF=0.86;AN=2;DP=1206;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1311,105,0:0,0,5,30
chr1	171536106	.	G	A	1061.24	PASS	AC=1;AF=0.571;AN=2;DP=193;MQ=60;set=variant3-variant15-variant20-variant31-variant32-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:257,0,791:7,21,2,10
chr1	171546833	.	C	A	1232.98	PASS	AC=2;AF=0.7;AN=2;DP=1213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1465,132,0:0,0,12,32
chr1	171548617	.	G	A	1511.37	PASS	AC=1;AF=0.607;AN=2;DP=4195;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,75:171:99:1871,0,2518:43,53,28,47
chr1	171548868	.	T	C	540.57	PASS	AC=2;AF=0.869;AN=2;DP=790;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:972,84,0:0,0,21,7
chr1	171556165	.	G	C	5483.96	PASS	AC=2;AF=0.837;AN=2;DP=7132;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5358,556,0:0,0,101,85
chr1	171557600	.	A	G	1100.19	PASS	AC=1;AF=0.5;AN=2;DP=505;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:69,76:145:99:1804,0,1618:27,42,33,43
chr1	171558516	.	C	T	1488.77	PASS	AC=2;AF=0.837;AN=2;DP=2668;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2739,230,0:0,0,42,35
chr1	171561225	.	C	T	6025.49	PASS	AC=2;AF=0.837;AN=2;DP=6672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6087,599,0:0,0,81,119
chr1	171561250	.	G	A	5055.33	PASS	AC=2;AF=0.837;AN=2;DP=5525;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5373,507,0:0,0,74,95
chr1	171561307	.	A	G	3784.04	PASS	AC=2;AF=0.837;AN=2;DP=3850;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:4044,330,0:0,0,62,48
chr1	171607702	.	C	T	3022.6	PASS	AC=2;AF=0.845;AN=2;DP=4371;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4576,467,0:0,0,82,74
chr1	171621525	.	C	T	2449.32	PASS	AC=1;AF=0.545;AN=2;DP=2109;MQ=60;set=variant5-variant10-variant15-variant20-variant22-variant23-variant31-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,101:226:99:2489,0,3262:74,51,54,47
chr1	171621834	.	C	T	522.54	PASS	AC=1;AF=0.545;AN=2;DP=416;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant15-variant20-variant22-variant23-variant31-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:594,0,882:10,23,8,17
chr1	171670823	.	T	A	6319.02	PASS	AC=1;AF=0.5;AN=2;DP=6167;MQ=60;set=variant3-variant6-variant7-variant8-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:239,211:450:99:5394,0,6144:108,131,103,108
chr1	171671463	.	T	G	4564.45	PASS	AC=1;AF=0.567;AN=2;DP=12308;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:251,261:512:99:6140,0,6207:95,156,104,157
chr1	171672559	.	T	G	380.64	PASS	AC=1;AF=0.6;AN=2;DP=897;set=variant-variant3-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant18-variant19-variant20-variant24-variant25-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,50:57:99:2038,0,110:0,7,20,30
chr1	171672565	.	GTATATATATATATATATATATATATATATATATA	GTATATATATA,GTATATATATATA,GTATATATATATATA,GTATATATATATATATATA,GTATATATATATATATATATA,GTATATATA,G,GTATATATATATATATATATATATA	2696.33	PASS	AC=0,1,0,0,0,0,0,0;AF=0.026,0.289,0.053,0.105,0.026,0.053,0.053,0.053;AN=2;DP=836;set=variant3-variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant29-variant31-variant32-variant38-variant40-variant43	GT:DP:GQ:SB	0/2:50:8:0,3,19,28
chr1	171672589	.	A	G	263.41	PASS	AC=1;AF=0.656;AN=2;DP=567;set=variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,27:37:99:632,0,219:4,6,13,14
chr1	171672591	.	A	G	826	PASS	AC=2;AF=0.889;AN=2;DP=657;set=variant3-variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:4,35:39:20:1319,20,0:2,2,15,20
chr1	171672593	.	A	G	1834.31	PASS	AC=2;AF=0.906;AN=2;DP=625;set=variant3-variant6-variant7-variant8-variant10-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2410,163,0:0,0,22,29
chr1	171672595	.	A	G	3085.65	PASS	AC=2;AF=0.864;AN=2;DP=458;set=variant3-variant6-filterInvariant8-variant10-variant15-variant19-variant20-variant31-variant32-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2455,166,0:0,0,23,30
chr1	171672613	.	A	C	788.59	PASS	AC=2;AF=1;AN=2;DP=1885;FS=0;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2846,200,0:0,0,39,27
chr1	171673054	.	T	C	4330.91	PASS	AC=1;AF=0.529;AN=2;DP=4428;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:156,156:312:99:4126,0,4089:82,74,72,84
chr1	171673236	.	G	A	2569.07	PASS	AC=1;AF=0.5;AN=2;DP=3213;set=variant3-variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:134,104:238:99:2653,0,3523:51,83,34,70
chr1	171673272	.	C	A	1407.55	PASS	AC=1;AF=0.5;AN=2;DP=2308;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:106,71:177:99:1798,0,2875:38,68,27,44
chr1	171673749	.	AT	A	229.86	PASS	AC=1;AF=0.5;AN=2;DP=253;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:189,0,430:3,9,1,5
chr1	171679958	.	G	A	922.37	PASS	AC=1;AF=0.569;AN=2;DP=2438;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,66:124:99:1753,0,1514:18,40,21,45
chr1	171707272	.	T	C	147.99	PASS	AC=2;AF=0.839;AN=2;DP=221;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant35-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:259,24,0:0,0,5,3
chr1	171711054	.	G	GGCTCCCGGGGAACTCCCGGCAGC	510.98	PASS	AC=1;AF=0.531;AN=2;DP=413;MQ=60;set=variant3-variant6-variant7-variant8-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:602,0,420:5,2,7,4
chr1	171711152	.	A	C	688.17	PASS	AC=1;AF=0.531;AN=2;DP=799;MQ=60;set=variant3-variant6-variant7-variant8-variant12-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:783,0,646:17,12,18,15
chr1	171750774	.	C	T	1297.53	PASS	AC=1;AF=0.6;AN=2;DP=2243;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,57:125:99:1502,0,1846:45,23,37,20
chr1	171751051	.	A	G	5749.28	PASS	AC=1;AF=0.643;AN=2;DP=6659;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:117,78:195:99:2047,0,3157:56,61,42,36
chr1	171751236	.	T	C	2150.52	PASS	AC=1;AF=0.639;AN=2;DP=2611;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,48:98:99:1279,0,1352:19,31,18,30
chr1	171753039	.	A	G	1436.9	PASS	AC=1;AF=0.6;AN=2;DP=2909;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:88,75:163:99:1986,0,2362:45,43,36,39
chr1	171754865	.	A	G	836.47	PASS	AC=1;AF=0.643;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:328,0,253:6,5,8,4
chr1	171755170	.	G	A	850.84	PASS	AC=1;AF=0.605;AN=2;DP=1266;MQ=60;set=variant3-variant4-variant5-variant6-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:709,0,1032:17,23,12,15
chr1	171763522	.	C	A	970.39	PASS	AC=1;AF=0.6;AN=2;DP=1201;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:677,0,1075:28,11,17,9
chr1	171765591	.	G	A	1639.28	PASS	AC=1;AF=0.605;AN=2;DP=3001;MQ=60;set=variant-variant3-variant5-variant6-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,77:181:99:1705,0,2629:58,46,44,33
chr1	171766580	.	T	G	2382.15	PASS	AC=1;AF=0.611;AN=2;DP=1401;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant20-variant23-variant31-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,88:170:99:2436,0,2048:55,27,57,31
chr1	171766696	.	A	G	3912.76	PASS	AC=1;AF=0.605;AN=2;DP=6415;MQ=60;set=variant-variant3-variant5-variant6-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:205,184:389:99:4603,0,5194:109,96,95,89
chr1	172001666	.	CTTTTTTTTTT	CTTTTTTTT,CTT,CT,CTTT,CTTTTTT,CTTTTTTTTT,C,CTTTTTTTTTTT	62.53	PASS	AC=0,0,0,0,0,0,1,0;AF=0.086,0.138,0.138,0.069,0.017,0.017,0.052,0.034;AN=2;DP=1281;set=variant2-variant3-filterInvariant4-variant5-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/7:25:99:5,8,1,11
chr1	172038079	.	T	C	1020.73	PASS	AC=2;AF=0.589;AN=2;DP=2956;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant30-variant31-variant33-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4180,417,0:0,0,68,71
chr1	172222629	.	TCTCTCCTCTCCTCTCCTCTC	TCTCTC,TCTCTCCTCTC,T,TCTCTCCTCTCCTCTC	508.02	PASS	AC=0,0,1,0;AF=0.439,0.045,0.076,0.167;AN=2;DP=672;set=variant3-variant5-variant6-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:19:99:6,2,9,2
chr1	172279909	.	G	A	585.61	PASS	AC=1;AF=0.6;AN=2;DP=907;MQ=60;set=variant2-variant7-variant9-variant12-variant14-variant15-variant16-variant23-variant24-variant29-variant32-variant33-variant34-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:911,0,1271:26,12,21,13
chr1	172280452	.	ATG	A,ATGTGTGTG,ATGTG,ATGTGTGTGTG,ATGTGTG	68.53	PASS	AC=0,0,0,1,0;AF=0.236,0.222,0.056,0.014,0.028;AN=2;DP=4723;set=filterInvariant-variant2-filterInvariant4-filterInvariant5-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant16-filterInvariant19-filterInvariant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant38-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/4:110:99:18,40,15,37
chr1	172292355	.	C	CTCA	989.17	PASS	AC=1;AF=0.6;AN=2;DP=258;MQ=60;set=variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant23-variant24-variant29-variant32-variant33-variant34-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:164,0,601:11,2,4,1
chr1	172307678	.	T	C	311.23	PASS	AC=1;AF=0.5;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant15-variant20-variant26-variant30-variant32-variant35-variant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:476,0,127:5,2,11,5
chr1	172308238	.	C	T	1504.45	PASS	AC=1;AF=0.574;AN=2;DP=4193;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,74:148:99:1596,0,1636:40,34,36,38
chr1	172356437	.	A	G	1961.73	PASS	AC=2;AF=1;AN=2;DP=3491;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,77:78:99:2224,198,0:1,0,29,48
chr1	172377262	.	G	A	1625.81	PASS	AC=1;AF=0.593;AN=2;DP=2512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant18-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,67:118:99:1892,0,1369:35,16,47,20
chr1	172377745	.	G	A	2992.85	PASS	AC=1;AF=0.5;AN=2;DP=2476;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant15-variant24-variant28-variant30-variant32-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,163:350:99:3978,0,4659:101,86,88,75
chr1	172380678	.	TA	TAA,T	1483.15	PASS	AC=0,1;AF=0.263,0.238;AN=2;DP=11214;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-variant12-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant20-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/2:325:99:144,132,24,25
chr1	172380875	.	C	A	5065.23	PASS	AC=2;AF=0.932;AN=2;DP=18344;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,497:498:99:14972,1480,0:1,0,233,264
chr1	172381181	.	T	TTG	4337.85	PASS	AC=1;AF=0.593;AN=2;DP=8795;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant18-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,172:336:99:5045,0,4979:83,81,88,84
chr1	172381284	.	T	C	3160.43	PASS	AC=1;AF=0.5;AN=2;DP=2387;MQ=60;set=variant9-variant10-variant15-variant24-variant28-variant30-variant32-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,185:372:99:4873,0,4734:97,90,94,91
chr1	172381383	.	T	C	5158.13	PASS	AC=1;AF=0.593;AN=2;DP=10986;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:248,246:494:99:6616,0,6298:143,105,141,105
chr1	172400009	.	AT	A	139.57	PASS	AC=1;AF=0.672;AN=2;DP=458;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:95:95,0,378:8,4,3,1
chr1	172410492	.	TACACACACACACACACACAC	TACACACACACAC,TACACAC,TACACACAC,T,TACACACACACACAC,TACACACACAC,TACACACACACACACACAC,TACACACACACACACAC	587.34	PASS	AC=0,1,0,0,1,0,0,0;AF=0.279,0.384,0.128,0.012,0.047,0.012,0.023,0.012;AN=2;DP=935;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/5:15:99:0,0,13,2
chr1	172410967	.	G	A	2257.56	PASS	AC=1;AF=0.676;AN=2;DP=5852;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,87:181:99:2263,0,2466:51,43,52,35
chr1	172411496	.	A	G	207.34	PASS	AC=2;AF=0.907;AN=2;DP=1405;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1443,120,0:0,0,17,23
chr1	172412797	.	A	G	2106.4	PASS	AC=1;AF=0.5;AN=2;DP=450;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:86,54:140:99:1379,0,2049:37,49,25,29
chr1	172412995	.	T	C	1060.55	PASS	AC=1;AF=0.676;AN=2;DP=3330;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,61:119:99:1410,0,1398:26,32,34,27
chr1	172417781	.	A	G	79.71	PASS	AC=2;AF=0.905;AN=2;DP=486;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:404,33,0:0,0,2,9
chr1	172425529	.	C	G	1572.2	PASS	AC=1;AF=0.645;AN=2;DP=6136;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,102:221:99:2458,0,2940:58,61,49,53
chr1	172431210	.	G	A	562.57	PASS	AC=1;AF=0.878;AN=2;DP=895;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:326,0,385:10,1,7,3
chr1	172434375	.	G	A	365.41	PASS	AC=1;AF=0.869;AN=2;DP=1133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:253,0,680:17,4,8,1
chr1	172434812	.	C	T	1084.98	PASS	AC=1;AF=0.661;AN=2;DP=2595;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,37:87:99:888,0,1319:21,29,17,20
chr1	172437592	.	G	A	1068.44	PASS	AC=1;AF=0.869;AN=2;DP=3812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,46:101:99:1146,0,1483:33,22,31,15
chr1	172501643	.	T	C	1846.42	PASS	AC=1;AF=0.568;AN=2;DP=3902;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,111:215:99:2709,0,2615:59,45,65,46
chr1	172502340	.	T	C	450.19	PASS	AC=1;AF=0.614;AN=2;DP=734;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:309,0,716:16,12,10,4
chr1	172502479	.	T	C	1220.4	PASS	AC=2;AF=0.784;AN=2;DP=4066;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4166,375,0:0,0,74,51
chr1	172502727	.	TA	T	1219.48	PASS	AC=1;AF=0.568;AN=2;DP=1772;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1585,0,1567:20,27,21,27
chr1	172522249	.	A	G	164.91	PASS	AC=1;AF=0.654;AN=2;DP=128;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant15-variant21-variant23-variant24-variant26-variant32-variant34-variant35-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,201:5,0,3,0
chr1	172634589	.	TG	T	529.37	PASS	AC=1;AF=0.5;AN=2;DP=479;MQ=60;set=variant8-variant10-variant15-variant23-variant30-variant31-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1525,0,1243:24,13,30,16
chr1	172634734	.	T	C	3710.21	PASS	AC=2;AF=1;AN=2;DP=4637;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4579,429,0:0,0,70,73
chr1	173154304	.	G	T	5150.08	PASS	AC=1;AF=0.591;AN=2;DP=2260;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,63:141:99:1637,0,2237:42,36,27,36
chr1	173154354	.	A	C	6694.05	PASS	AC=1;AF=0.533;AN=2;DP=2067;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,78:164:99:2065,0,2522:47,39,42,36
chr1	173154539	.	T	C	9801.02	PASS	AC=1;AF=0.533;AN=2;DP=3759;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:163,170:333:99:4333,0,4376:82,81,89,81
chr1	173155022	.	G	GA	2701.18	PASS	AC=1;AF=0.533;AN=2;DP=1089;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,37:80:99:883,0,1103:16,27,13,24
chr1	173157541	.	T	C	419.21	PASS	AC=1;AF=0.55;AN=2;DP=87;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant15-variant18-variant19-variant25-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:153,0,155:4,0,4,0
chr1	173174389	.	G	A	1043.28	PASS	AC=1;AF=0.5;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant12-variant15-variant20-variant30	GT:AD:DP:GQ:PL:SB	0/1:42,75:117:99:1821,0,960:28,14,44,31
chr1	173472465	.	G	A	947.44	PASS	AC=1;AF=0.5;AN=2;DP=423;MQ=60;set=variant9-variant12-variant15-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:47,52:99:99:1086,0,1149:23,24,26,26
chr1	173490407	.	TAA	TA,T	94.44	PASS	AC=1,0;AF=0.355,0.25;AN=2;DP=1031;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:46:99:16,12,12,6
chr1	173526521	.	A	G	509.85	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=1.095;FractionInformativeReads=1;MQ=60;MQRankSum=-2.087;QD=11.08;ReadPosRankSum=-1.274;SOR=0.545;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:538,0,514:13,10,12,11
chr1	173556699	.	G	T	665.28	PASS	AC=2;AF=0.955;AN=2;DP=543;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:595,48,0:0,0,13,3
chr1	173626764	.	CT	CTTTTTTTTT,CTTTTTTT,CTTTTTTTT,CTTTT,CTTTTTTTTTT,CTTTTTTTTTTTT,C	33.69	PASS	AC=0,2,0,0,0,0,0;AF=0.095,0.286,0.167,0.048,0.048,0.048,0.095;AN=2;DP=264;FS=0;set=variant-variant3-variant4-variant6-variant10-variant12-variant15-variant20-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:8:22:0,0,1,7
chr1	173837082	.	CA	C	639.44	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=1.079;FractionInformativeReads=1;MQ=60;MQRankSum=-2.002;QD=13.32;ReadPosRankSum=-0.392;SOR=0.874;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:677,0,742:12,13,10,13
chr1	173839907	.	C	T	1196.41	PASS	AC=1;AF=0.571;AN=2;DP=809;MQ=60;set=variant9-variant15-variant19-variant20-variant28-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:78,77:155:99:1944,0,2067:42,36,37,40
chr1	173905652	.	CAAAA	CAAAAAA,CAAAAAAA,CAAAAA,CAAAAAAAAAA,CAAA,CAA,CA,C	190.89	PASS	AC=0,0,0,0,1,0,0,0;AF=0.05,0.025,0.1,0.025,0.15,0.075,0.05,0.025;AN=2;DP=785;set=variant2-filterInvariant6-filterInvariant9-variant10-variant12-filterInvariant13-filterInvariant15-variant21-variant22-variant23-variant24-variant29-variant32-variant33-variant34-variant36-variant37-variant38-filterInvariant39-variant44	GT:DP:GQ:SB	0/5:28:99:9,7,11,1
chr1	173906656	.	TA	TAA,T	66.28	PASS	AC=1,0;AF=0.463,0.037;AN=2;DP=6908;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant27-variant29-filterInvariant30-filterInvariant32-filterInvariant34-filterInvariant36-filterInvariant38-filterInvariant39-variant40-filterInvariant42-filterInvariant43	GT:DP:GQ:SB	0/1:273:99:102,126,22,23
chr1	173941617	.	T	C	4965.4	PASS	AC=1;AF=0.667;AN=2;DP=1030;MQ=60;set=variant9-variant15-variant19-variant28-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:120,90:210:99:2203,0,2885:75,45,58,32
chr1	173961839	.	G	C	439.99	PASS	AC=1;AF=0.5;AN=2;DP=348;set=variant9-variant15-variant19-variant20-variant28-filterInvariant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:175,0,604:16,5,8,3
chr1	174417231	.	G	A	3238.26	PASS	AC=2;AF=0.955;AN=2;DP=6175;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4936,479,0:0,0,99,61
chr1	174769068	.	GCACACACACACACACACACACACA	G,GCACACACACA,GCACACACACACA,GCA,GCACA,GCACACACACACACACACA,GCACACACA,GCACACACACACACA,GCACACA,GCACACACACACACACACACACACACA,GCACACACACACACACACACA	666.74	PASS	AC=0,0,0,1,1,0,0,0,0,0,0;AF=0.174,0.035,0.093,0.465,0.093,0.012,0.023,0.012,0.012,0.012,0.012;AN=2;DP=1052;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/5:27:99:0,0,16,11
chr1	174843716	.	CTTTTTTTTTTTTTT	CTTTTTTTT,CTTTTTTTTTTTT,CTTTTT,CTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTT,CTTTTTTTTTTTTT,CT,C	143.61	PASS	AC=0,0,0,1,0,0,0,0,0;AF=0.014,0.216,0.014,0.027,0.189,0.054,0.135,0.014,0.027;AN=2;DP=1269;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-filterInvariant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:34:99:9,15,2,8
chr1	174926860	.	CTTTT	CTT,CTTT,CT,C	109.3	PASS	AC=0,1,0,0;AF=0.259,0.241,0.052,0.017;AN=2;DP=1103;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant9-filterInvariant10-variant12-variant13-variant15-variant17-variant18-variant22-variant24-variant27-variant28-variant29-variant32-variant33-variant34-filterInvariant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/2:40:11:5,2,19,14
chr1	174927388	.	G	C	1484.84	PASS	AC=2;AF=0.955;AN=2;DP=1576;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1690,138,0:0,0,9,37
chr1	174945171	.	CTGTATGACTGTGA	C	1161.53	PASS	AC=1;AF=0.553;AN=2;DP=1655;MQ=60;set=variant5-variant6-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant29-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1816,0,6716:26,24,29,18
chr1	174948082	.	A	AT	604.42	PASS	AC=1;AF=0.5;AN=2;DP=202;MQ=60;set=variant9-variant15-variant28	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:567,0,526:11,17,11,20
chr1	174959108	.	G	A	583.48	PASS	AC=1;AF=0.538;AN=2;DP=1161;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant12-variant15-variant17-variant22-variant26-variant30-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,48:110:99:1102,0,1730:37,25,26,22
chr1	174959536	.	G	GA	789.12	PASS	AC=1;AF=0.538;AN=2;DP=1123;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant12-variant15-variant17-variant22-variant26-variant30-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,42:108:99:854,0,1536:38,28,21,21
chr1	174960911	.	ATTTT	AT,ATT,A,ATTTTT,ATTT	7514.61	PASS	AC=1,1,0,0,0;AF=0.524,0.202,0.036,0.012,0.012;AN=2;DP=14350;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:340:99:57,8,115,160
chr1	174961501	.	C	T	851.36	PASS	AC=1;AF=0.553;AN=2;DP=1049;FractionInformativeReads=1;set=variant5-variant6-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant29-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,48:79:99:1279,0,897:24,7,32,16
chr1	174961577	.	G	A	2520.7	PASS	AC=1;AF=0.538;AN=2;DP=2173;set=variant-variant2-variant4-variant8-variant10-variant12-variant15-variant17-variant22-variant26-variant30-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:113,93:206:99:1990,0,2731:57,56,48,45
chr1	174961987	.	C	T	8789.82	PASS	AC=2;AF=0.838;AN=2;DP=11035;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,342:342:99:10001,1025,0:0,0,179,163
chr1	174962082	.	C	T	2712.11	PASS	AC=1;AF=0.553;AN=2;DP=4577;MQ=60;set=variant5-variant6-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant29-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,149:308:99:3760,0,4182:68,91,79,70
chr1	174964189	.	ATAAATG	A	4748.11	PASS	AC=1;AF=0.553;AN=2;DP=5800;MQ=60;set=variant5-variant6-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant29-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,164:330:99:6222,0,9869:67,99,78,86
chr1	174968530	.	T	TC	1577.5	PASS	AC=2;AF=1;AN=2;DP=2252;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1940,156,0:0,0,25,26
chr1	174969271	.	C	T	4788.55	PASS	AC=2;AF=0.825;AN=2;DP=6764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,210:210:99:6405,629,0:0,0,104,106
chr1	174980242	.	TAAAAAAAA	T,TAAAAAAAAA,TAAAAAAA,TAAAAAA	1307.53	PASS	AC=0,1,0,0;AF=0.25,0.075,0.2,0.038;AN=2;DP=3102;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:72:96:36,16,13,7
chr1	175046488	.	G	A	1249.92	PASS	AC=2;AF=0.662;AN=2;DP=3046;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3008,301,0:0,0,63,38
chr1	175046789	.	A	G	963.8	PASS	AC=2;AF=0.662;AN=2;DP=4343;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4021,378,0:0,0,60,66
chr1	175052828	.	G	A	754.52	PASS	AC=1;AF=0.545;AN=2;DP=1698;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant22-variant26-variant30-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,46:81:99:1191,0,932:25,10,30,16
chr1	175053098	.	T	C	3119.6	PASS	AC=1;AF=0.563;AN=2;DP=2265;MQ=60;set=variant6-variant9-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant28-variant29-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,71:180:99:1656,0,2636:42,67,24,47
chr1	175053101	.	A	T	1011.62	PASS	AC=2;AF=0.662;AN=2;DP=4791;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:6353,537,0:0,0,64,114
chr1	175054548	.	C	T	923.66	PASS	AC=2;AF=0.662;AN=2;DP=2344;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2294,217,0:0,0,50,23
chr1	175063571	.	A	G	197.43	PASS	AC=1;AF=0.567;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant28-variant29-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:188,0,111:1,3,1,5
chr1	175086461	.	A	G	334.65	PASS	AC=1;AF=0.691;AN=2;DP=1129;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:674,0,590:0,16,3,18
chr1	175087606	.	T	C	1567.88	PASS	AC=1;AF=0.595;AN=2;DP=2246;MQ=60;set=variant-variant4-variant6-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,52:121:99:1504,0,1883:48,21,39,13
chr1	175087677	.	G	A	2508	PASS	AC=1;AF=0.643;AN=2;DP=7444;set=variant-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,157:324:99:3816,0,4007:100,67,93,64
chr1	175087683	.	A	AT	3916.5	PASS	AC=1;AF=0.595;AN=2;DP=5761;set=variant-variant4-variant6-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,153:321:99:3306,0,3772:99,69,90,63
chr1	175087729	.	T	C	2734.54	PASS	AC=1;AF=0.643;AN=2;DP=9164;set=variant-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,180:365:99:4596,0,4297:92,93,95,85
chr1	175092674	.	C	T	3771.42	PASS	AC=2;AF=0.75;AN=2;DP=6597;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,216:216:99:6719,646,0:0,0,109,107
chr1	175092707	.	C	T	1265.3	PASS	AC=2;AF=0.66;AN=2;DP=4361;MQ=60;set=variant-variant4-variant9-variant10-variant12-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6319,583,0:0,0,93,102
chr1	175092840	.	T	C	2394.04	PASS	AC=2;AF=0.75;AN=2;DP=5094;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4256,389,0:0,0,49,81
chr1	175092992	.	GGAGT	G	367.87	PASS	AC=2;AF=0.881;AN=2;DP=755;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:835,57,0:0,0,3,16
chr1	175095936	.	C	T	147.1	PASS	AC=2;AF=0.654;AN=2;DP=541;MQ=60;set=variant-variant4-variant9-variant10-variant12-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1046,84,0:0,0,22,6
chr1	175097331	.	G	A	760.92	PASS	AC=2;AF=0.712;AN=2;DP=3649;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4068,387,0:0,0,66,63
chr1	175097349	.	C	T	2585.37	PASS	AC=2;AF=0.763;AN=2;DP=4371;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3965,401,0:0,0,67,67
chr1	175097991	.	C	T	422.96	PASS	AC=2;AF=0.735;AN=2;DP=937;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:938,84,0:0,0,10,18
chr1	175104796	.	G	T	934.74	PASS	AC=2;AF=0.884;AN=2;DP=1241;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1373,128,0:0,0,29,14
chr1	175105880	.	G	A	2346.78	PASS	AC=2;AF=0.784;AN=2;DP=2690;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2111,204,0:0,0,39,29
chr1	175105942	.	G	A	3167.14	PASS	AC=2;AF=0.966;AN=2;DP=3627;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2464,224,0:0,0,44,31
chr1	175113578	.	T	C	2324.08	PASS	AC=2;AF=0.966;AN=2;DP=4569;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3295,306,0:0,0,62,40
chr1	175116046	.	CT	CTT,C	578.64	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=3223;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:86:99:10,12,37,27
chr1	175116252	.	C	G	1678.13	PASS	AC=2;AF=0.864;AN=2;DP=3562;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3159,288,0:0,0,43,53
chr1	175126073	.	CAAAAAA	CAAAA,C,CAAAAAAAAA,CAAAAA,CAAAAAAA,CAAAAAAAA,CAAAAAAAAAA	77.92	PASS	AC=0,0,0,1,0,0,0;AF=0.036,0.196,0.018,0.071,0.143,0.054,0.018;AN=2;DP=1028;set=filterInvariant2-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant39-variant40-variant44	GT:DP:GQ:SB	0/4:21:94:6,6,8,1
chr1	175126223	.	T	A	1584.34	PASS	AC=2;AF=0.603;AN=2;DP=5780;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6165,638,0:0,0,105,108
chr1	175126423	.	A	G	832.01	PASS	AC=2;AF=0.593;AN=2;DP=1813;MQ=60;set=variant2-variant4-variant7-variant9-variant12-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,82:84:99:2729,202,0:1,1,39,43
chr1	175126524	.	T	C	1036.72	PASS	AC=2;AF=0.593;AN=2;DP=2395;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant12-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3133,276,0:0,0,51,41
chr1	175126644	.	G	A	4210.13	PASS	AC=2;AF=0.86;AN=2;DP=5376;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,154:155:99:4491,454,0:1,0,71,83
chr1	175126721	.	T	C	1665.72	PASS	AC=2;AF=0.596;AN=2;DP=4190;MQ=60;set=variant2-variant4-variant7-variant9-variant12-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:6074,592,0:0,0,116,82
chr1	175127534	.	G	C	337.13	PASS	AC=2;AF=0.597;AN=2;DP=1165;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1192,108,0:0,0,13,23
chr1	175127771	.	C	T	240.08	PASS	AC=2;AF=0.597;AN=2;DP=1295;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1289,130,0:0,0,23,21
chr1	175128536	.	G	C	250.34	PASS	AC=2;AF=0.594;AN=2;DP=1625;FractionInformativeReads=1;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2295,154,0:0,0,19,32
chr1	175128537	.	G	A	250.34	PASS	AC=2;AF=0.594;AN=2;DP=1614;FractionInformativeReads=1;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2295,154,0:0,0,19,32
chr1	175128543	.	C	T	250.34	PASS	AC=2;AF=0.594;AN=2;DP=1559;FractionInformativeReads=1;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2242,151,0:0,0,20,29
chr1	175128726	.	A	G	621.35	PASS	AC=2;AF=0.594;AN=2;DP=2057;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,84:85:99:2619,245,0:1,0,51,33
chr1	175129945	.	TC	T	931.12	PASS	AC=2;AF=0.594;AN=2;DP=1803;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2424,180,0:0,0,29,30
chr1	175129947	.	TTCTTCTTG	T	922.28	PASS	AC=2;AF=0.594;AN=2;DP=1910;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2424,180,0:0,0,29,31
chr1	175130204	.	G	A	594.78	PASS	AC=2;AF=0.594;AN=2;DP=2401;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2871,269,0:0,0,38,52
chr1	175130276	.	G	A	1611.25	PASS	AC=2;AF=0.966;AN=2;DP=2500;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2094,206,0:0,0,26,43
chr1	175161849	.	G	T	581.59	PASS	AC=2;AF=0.662;AN=2;DP=2160;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1844,198,0:0,0,28,38
chr1	175161930	.	C	G	274.57	PASS	AC=2;AF=0.662;AN=2;DP=759;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:707,60,0:0,0,4,16
chr1	175324518	.	GCA	G	3253.26	PASS	AC=1;AF=0.78;AN=2;DP=2994;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:1493,0,2547:24,10,23,15
chr1	175324521	.	A	T	3262.3	PASS	AC=1;AF=0.78;AN=2;DP=3030;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:1493,0,2546:24,10,23,15
chr1	175324651	.	A	G	1750.75	PASS	AC=1;AF=0.724;AN=2;DP=5877;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,87:172:99:2011,0,2054:42,43,43,44
chr1	175329083	.	A	C,T	336.22	PASS	AC=1,0;AF=0.426,0.368;AN=2;DP=294;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:9:99:1,4,3,1
chr1	175335234	.	C	T	2494.17	PASS	AC=1;AF=0.615;AN=2;DP=2496;MQ=60;set=variant-variant5-variant9-variant14-variant15-variant17-variant24-variant26-variant28-variant31-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:137,123:260:99:3187,0,3425:65,72,57,66
chr1	175335412	.	A	C	1176.61	PASS	AC=1;AF=0.805;AN=2;DP=1397;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:394,0,573:2,15,0,11
chr1	175336292	.	C	A	885.03	PASS	AC=1;AF=0.615;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant14-variant15-variant17-variant24-variant26-variant28-variant31-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:612,0,886:21,10,16,8
chr1	175336305	.	G	C	1010.17	PASS	AC=1;AF=0.615;AN=2;DP=845;MQ=60;set=variant-variant5-variant9-variant14-variant15-variant17-variant24-variant26-variant28-variant31-variant32-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:854,0,1042:25,13,20,12
chr1	175336530	.	T	C	1364.14	PASS	AC=1;AF=0.724;AN=2;DP=2903;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1133,0,942:14,22,15,28
chr1	175336619	.	T	C	661.62	PASS	AC=1;AF=0.711;AN=2;DP=1578;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:514,0,301:4,9,7,11
chr1	175348543	.	T	C	648.67	PASS	AC=1;AF=0.775;AN=2;DP=1787;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:610,0,567:15,5,16,5
chr1	175348723	.	C	T	1050.17	PASS	AC=1;AF=0.775;AN=2;DP=4651;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,72:133:99:1824,0,1612:36,25,39,33
chr1	175355128	.	C	G	168.92	PASS	AC=1;AF=0.711;AN=2;DP=1704;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,26:58:99:639,0,826:21,11,17,9
chr1	175355152	.	C	T	187.57	PASS	AC=1;AF=0.583;AN=2;DP=1079;MQ=60;set=variant2-variant3-variant4-variant6-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant24-variant25-variant27-variant29-variant30-variant31-variant33	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:752,0,996:23,16,22,13
chr1	175355391	.	A	G	713.78	PASS	AC=2;AF=0.893;AN=2;DP=3075;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:2660,237,0:0,1,45,37
chr1	175355618	.	T	C	615.88	PASS	AC=1;AF=0.769;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:531,0,482:4,12,4,16
chr1	175360690	.	C	T	997.02	PASS	AC=1;AF=0.75;AN=2;DP=3070;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:920,0,1124:18,25,14,25
chr1	175362736	.	G	A	358.52	PASS	AC=1;AF=0.763;AN=2;DP=780;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:365,0,420:11,4,10,2
chr1	175375683	.	T	C	2035.15	PASS	AC=1;AF=0.776;AN=2;DP=8418;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:153,134:287:99:3263,0,3937:82,71,68,66
chr1	175375802	.	T	C	2680.88	PASS	AC=1;AF=0.776;AN=2;DP=9191;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,120:256:99:3007,0,3337:61,75,60,60
chr1	175376019	.	AG	A,AGG	85.03	PASS	AC=1,0;AF=0.756,0.026;AN=2;DP=1531;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:40:99:5,12,5,18
chr1	175712765	.	GTCTCTCTCTCTCTCTCTCTCTCTC	GTCTCTCTCTCTCTCTCTC,GTCTCTCTCTCTC,GTCTCTCTCTCTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTC,GTCTCTCTC,GTCTC,GTCTCTCTCTCTCTCTCTCTCTC,GTCTCTCTCTC,GTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTCTCTCTCTCTCTCTC,G	584.99	PASS	AC=0,0,0,0,0,0,1,0,0,1,0,0;AF=0.159,0.146,0.024,0.073,0.012,0.061,0.073,0.024,0.134,0.098,0.049,0.012;AN=2;DP=1139;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	10/7:13:99:0,0,7,6
chr1	175913828	.	C	T	46.5	PASS	AC=1;AF=0.632;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant21-variant24-variant26-variant27-variant31-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:297,0,303:8,0,8,2
chr1	175916267	.	T	C	4402.9	PASS	AC=2;AF=0.977;AN=2;DP=5536;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4768,440,0:0,0,68,79
chr1	175916506	.	AT	A,ATT	66.93	PASS	AC=0,1;AF=0.382,0.118;AN=2;DP=596;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-variant13-variant15-variant16-variant18-variant22-filterInvariant25-variant26-filterInvariant28-filterInvariant31-variant33-filterInvariant35-variant40-filterInvariant42	GT:DP:GQ:SB	0/2:20:70:1,6,1,12
chr1	175937540	.	C	T	3672.47	PASS	AC=2;AF=0.977;AN=2;DP=5430;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,175:177:99:4997,477,0:1,1,95,80
chr1	175951347	.	T	A	2714.67	PASS	AC=2;AF=0.977;AN=2;DP=3543;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2789,257,0:0,0,40,46
chr1	175955996	.	T	C	918.22	PASS	AC=1;AF=0.542;AN=2;DP=825;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant18-variant19-variant21-variant22-variant24-variant29-variant32-variant35-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:53,39:92:99:926,0,1448:27,26,17,22
chr1	176012807	.	G	A	1171.01	PASS	AC=2;AF=0.977;AN=2;DP=1001;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:795,78,0:0,0,17,9
chr1	176050430	.	GA	G,GAA	40.31	PASS	AC=1,0;AF=0.424,0.076;AN=2;DP=2093;set=filterInvariant-filterInvariant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant12-variant14-variant15-variant17-filterInvariant21-variant22-variant23-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:75:99:18,30,9,18
chr1	176103053	.	TAC	T	677.16	PASS	AC=1;AF=0.625;AN=2;DP=1830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:1017,0,1280:14,19,13,14
chr1	176105710	.	CA	C	139.43	PASS	AC=1;AF=0.5;AN=2;DP=324;MQ=60;set=filterInvariant15-filterInvariant20-filterInvariant28-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:57,14:71:99:177,0,1306:26,31,7,7
chr1	176118219	.	G	A	650.28	PASS	AC=1;AF=0.596;AN=2;DP=1010;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,7:32:99:155,0,647:14,11,3,4
chr1	176132292	.	C	T	1937.82	PASS	AC=2;AF=0.977;AN=2;DP=1761;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1423,126,0:0,0,17,25
chr1	176137968	.	G	T	575.8	PASS	AC=1;AF=0.5;AN=2;DP=676;MQ=60;set=variant-variant15-variant18-variant19-variant21-variant22-variant24-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:897,0,714:11,20,18,21
chr1	176153658	.	T	C	435.8	PASS	AC=1;AF=0.837;AN=2;DP=1196;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:497,0,795:19,10,14,7
chr1	176176406	.	T	TGC	1086.82	PASS	AC=1;AF=0.542;AN=2;DP=889;MQ=60;set=variant-variant15-variant18-variant19-variant21-variant22-variant24-variant29-variant32-variant35-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:1049,0,1374:20,22,18,16
chr1	176176659	.	C	G	776.17	PASS	AC=2;AF=1;AN=2;DP=1408;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1258,123,0:0,0,16,25
chr1	176525194	.	G	A	607.77	PASS	AC=1;AF=0.643;AN=2;DP=1214;MQ=60;set=variant2-variant4-variant5-variant6-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:964,0,663:14,9,20,10
chr1	176660047	.	TAA	T,TA,TAAA,TAAAA	699.68	PASS	AC=1,1,0,0;AF=0.167,0.417,0.131,0.095;AN=2;DP=2766;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:52:99:7,5,22,18
chr1	176660247	.	C	T	3433.57	PASS	AC=1;AF=0.708;AN=2;DP=9207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,147:308:99:3314,0,4102:80,81,77,70
chr1	176665102	.	ATGTGTGTGTGTGTGTGTGTG	ATGTGTGTGTGTGTGTGTGTGTG,A,ATGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTGTG	53.55	PASS	AC=0,0,0,0,1,0,0;AF=0.097,0.355,0.21,0.016,0.016,0.016,0.016;AN=2;DP=675;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:14:20:0,3,1,10
chr1	176671881	.	T	TTGTGTG,TTG,TTGTG	634.16	PASS	AC=1,0,0;AF=0.2,0.325,0.05;AN=2;DP=1768;set=variant2-variant3-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant11-variant15-filterInvariant17-filterInvariant20-variant27-variant30-variant31-variant32-filterInvariant33-filterInvariant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:40:99:7,13,8,12
chr1	176681165	.	ATG	A,ATGTG	586.34	PASS	AC=1,0;AF=0.625,0.021;AN=2;DP=1377;set=variant2-variant4-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:36:99:5,17,2,12
chr1	176734756	.	C	T	2611.24	PASS	AC=1;AF=0.659;AN=2;DP=3325;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:2011,0,1978:50,27,49,28
chr1	176769358	.	T	C	563.12	PASS	AC=1;AF=0.688;AN=2;DP=858;MQ=60;set=variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant29-variant32-variant33-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:981,0,923:11,23,12,26
chr1	176809368	.	C	T	676.41	PASS	AC=1;AF=0.536;AN=2;DP=1683;set=variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant29-variant32-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:64,51:115:99:1117,0,1690:28,36,21,30
chr1	176812620	.	T	C	292.7	PASS	AC=1;AF=0.5;AN=2;DP=283;MQ=60;set=variant6-variant15-variant20-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,47:90:99:1092,0,996:19,24,23,24
chr1	176813092	.	TTTG	T	761.64	PASS	AC=1;AF=0.548;AN=2;DP=535;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant28-variant29-variant32-variant33-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:522,0,994:9,13,5,9
chr1	176813190	.	A	G	384.93	PASS	AC=1;AF=0.756;AN=2;DP=999;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:593,0,271:6,4,6,12
chr1	176813997	.	C	G	721.39	PASS	AC=1;AF=0.5;AN=2;DP=646;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant28-variant32-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,43:72:99:1357,0,984:2,27,7,36
chr1	176830978	.	C	T	115.43	PASS	AC=2;AF=0.917;AN=2;DP=1022;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1072,104,0:0,0,20,15
chr1	176832145	.	T	G	1750.87	PASS	AC=1;AF=0.55;AN=2;DP=1274;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant12-variant15-variant19-variant34-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,69:155:99:1914,0,2408:39,47,32,37
chr1	176832613	.	C	T	115.39	PASS	AC=2;AF=0.929;AN=2;DP=1519;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1677,147,0:0,0,24,25
chr1	176845410	.	G	C	456.87	PASS	AC=2;AF=0.85;AN=2;DP=1063;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1010,90,0:0,0,21,9
chr1	176845528	.	C	T	629.25	PASS	AC=2;AF=0.917;AN=2;DP=2778;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2214,203,0:0,0,42,26
chr1	176857347	.	A	G	684.56	PASS	AC=2;AF=0.917;AN=2;DP=3258;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3302,324,0:0,0,49,59
chr1	176863836	.	G	C	377.45	PASS	AC=2;AF=0.917;AN=2;DP=3307;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2627,243,0:0,0,44,37
chr1	176863867	.	T	C	298.66	PASS	AC=2;AF=0.917;AN=2;DP=3775;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3133,309,0:0,0,55,48
chr1	176913215	.	AT	A,ATT	247.8	PASS	AC=1,0;AF=0.571,0.036;AN=2;DP=887;set=variant2-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-filterInvariant23-filterInvariant24-filterInvariant25-variant29-filterInvariant31-variant32-variant33-variant34-variant37-filterInvariant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:15:5:1,1,2,11
chr1	177198818	.	G	T	285.13	PASS	AC=1;AF=0.618;AN=2;DP=229;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant15-variant21-variant23-variant25-variant27-variant28-variant31-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:259,0,407:11,0,7,1
chr1	177198998	.	T	C	1620.78	PASS	AC=1;AF=0.632;AN=2;DP=2861;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant12-variant15-variant21-variant23-variant25-variant27-variant28-variant31-variant34-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,90:169:99:2275,0,2099:40,39,48,42
chr1	177199426	.	G	A	346.59	PASS	AC=1;AF=0.611;AN=2;DP=409;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant12-variant15-variant21-variant23-variant25-variant27-variant28-variant31-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:463,0,405:4,10,4,13
chr1	177247854	.	C	G	1083.79	PASS	AC=1;AF=0.571;AN=2;DP=1882;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant26-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,70:111:99:1665,0,1016:11,30,29,41
chr1	177250670	.	G	A	1713.49	PASS	AC=1;AF=0.6;AN=2;DP=2453;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant12-variant15-variant17-variant21-variant23-variant25-variant27-variant28-variant31-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,71:146:99:1699,0,1924:39,36,36,35
chr1	177251603	.	GA	G	952.1	PASS	AC=1;AF=0.5;AN=2;DP=1010;set=variant9-variant10-variant11-variant15-variant26-variant30-variant32-variant33-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:35,65:100:99:1520,0,649:14,21,24,41
chr1	177898799	.	C	T	430.64	PASS	AC=2;AF=0.645;AN=2;DP=1611;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2222,216,0:0,0,43,29
chr1	177901619	.	G	A	2076.77	PASS	AC=2;AF=0.594;AN=2;DP=1696;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4140,409,0:0,0,85,52
chr1	177901655	.	G	A	4558.45	PASS	AC=2;AF=0.594;AN=2;DP=2559;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:8279,571,0:0,0,115,70
chr1	177901658	.	C	T	4586.2	PASS	AC=2;AF=0.594;AN=2;DP=2655;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:8279,571,0:0,0,116,73
chr1	177901713	.	T	C	2799.42	PASS	AC=2;AF=0.625;AN=2;DP=6423;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,294:294:99:8728,880,0:0,0,155,139
chr1	177901741	.	A	G	2792.04	PASS	AC=2;AF=0.638;AN=2;DP=6727;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,311:311:99:9093,931,0:0,0,164,147
chr1	177902387	.	C	A	2676.47	PASS	AC=2;AF=0.594;AN=2;DP=2837;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:5908,599,0:0,0,118,83
chr1	177902482	.	G	A	3438.87	PASS	AC=2;AF=0.594;AN=2;DP=3782;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,271:272:99:7950,802,0:0,1,130,141
chr1	177902725	.	C	T	2311.98	PASS	AC=2;AF=0.594;AN=2;DP=2727;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5582,558,0:0,0,102,85
chr1	177902753	.	G	C	1482.9	PASS	AC=2;AF=0.625;AN=2;DP=5276;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:5910,608,0:0,0,105,98
chr1	177905469	.	C	A	1112.88	PASS	AC=1;AF=0.607;AN=2;DP=1556;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:64,70:134:99:1626,0,1557:39,25,40,30
chr1	177906292	.	C	T	766.36	PASS	AC=1;AF=0.607;AN=2;DP=641;MQ=60;set=variant3-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant30-variant31-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:551,0,490:12,8,13,13
chr1	177913980	.	T	C	407.06	PASS	AC=1;AF=0.942;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,8:9:19:228,0,19:1,0,1,7
chr1	177914728	.	A	G	972.19	PASS	AC=1;AF=0.702;AN=2;DP=4349;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,67:141:99:1683,0,2051:46,28,41,26
chr1	177916890	.	A	AAGGGACAGGGAGGGGAGGTGAGGGG	265.57	PASS	AC=1;AF=0.931;AN=2;DP=257;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:349,0,658:6,0,5,0
chr1	177917499	.	G	A	560.61	PASS	AC=1;AF=0.5;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant27-variant32-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:589,0,1004:19,16,15,9
chr1	177921434	.	T	A	691.15	PASS	AC=2;AF=0.779;AN=2;DP=1506;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1437,132,0:0,0,14,30
chr1	177923324	.	G	A	1273.21	PASS	AC=1;AF=0.5;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant27-variant32-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1301,0,1341:30,24,31,16
chr1	177929521	.	G	A	1476.45	PASS	AC=1;AF=0.5;AN=2;DP=692;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant27-variant32-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:73,62:135:99:1505,0,1761:41,32,34,28
chr1	177929554	.	C	T	2592.01	PASS	AC=1;AF=0.633;AN=2;DP=3191;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,70:132:99:1643,0,1363:32,30,36,34
chr1	177929987	.	T	C	1780.75	PASS	AC=2;AF=0.837;AN=2;DP=4865;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3217,319,0:0,0,62,45
chr1	177930027	.	G	GAGGGATGTAGAACTTCATGGGTGCTTTGGGACC	3000.33	PASS	AC=1;AF=0.5;AN=2;DP=820;MQ=60;set=variant15-variant20-variant27-variant32-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:3038,0,2597:36,32,35,29
chr1	177930508	.	AG	A	539.21	PASS	AC=1;AF=0.5;AN=2;DP=104;MQ=60;set=variant15-variant20-variant27-variant32-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:7,19:26:99:576,0,157:4,3,14,5
chr1	177930642	.	G	A	1447.51	PASS	AC=2;AF=0.677;AN=2;DP=2337;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3079,306,0:0,0,60,42
chr1	177930894	.	C	T	1670.61	PASS	AC=2;AF=0.849;AN=2;DP=2201;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1887,176,0:0,0,26,33
chr1	177931086	.	C	T	298.19	PASS	AC=2;AF=0.683;AN=2;DP=638;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1133,114,0:0,0,14,24
chr1	177931122	.	G	A	57.19	PASS	AC=1;AF=0.571;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant14-variant15-variant19-variant28-variant30-variant34-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:235,0,441:3,12,2,7
chr1	177933443	.	G	A	456.31	PASS	AC=2;AF=0.683;AN=2;DP=3676;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3461,351,0:0,0,46,71
chr1	177933505	.	C	T	869.19	PASS	AC=1;AF=0.567;AN=2;DP=813;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant14-variant15-variant19-variant28-variant30-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:555,0,765:6,20,7,14
chr1	177934351	.	G	T	1541.08	PASS	AC=1;AF=0.567;AN=2;DP=1221;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant14-variant15-variant19-variant28-variant30-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,55:100:99:1474,0,1149:19,26,18,37
chr1	177934467	.	T	C	106.77	PASS	AC=2;AF=0.7;AN=2;DP=312;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:513,39,0:0,0,1,12
chr1	177935050	.	T	A	1210.55	PASS	AC=1;AF=0.567;AN=2;DP=939;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant14-variant15-variant19-variant28-variant30-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,40:66:99:1036,0,594:16,10,20,20
chr1	177935203	.	A	G	466.35	PASS	AC=2;AF=0.677;AN=2;DP=1809;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1566,117,0:1,0,20,30
chr1	177935275	.	A	G	575.81	PASS	AC=2;AF=0.849;AN=2;DP=1313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:976,81,0:0,0,8,19
chr1	177937009	.	G	A	1481.33	PASS	AC=1;AF=0.5;AN=2;DP=816;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant20-variant27-variant32-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:76,52:128:99:1407,0,2208:35,41,22,30
chr1	177938972	.	C	T	715.35	PASS	AC=1;AF=0.571;AN=2;DP=276;MQ=60;set=variant6-variant10-variant11-variant15-variant19-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:436,0,450:11,8,11,9
chr1	178062359	.	G	A	2058.31	PASS	AC=1;AF=0.556;AN=2;DP=3492;MQ=60;set=variant-variant4-variant6-variant10-variant13-variant15-variant18-variant20-variant21-variant23-variant26-variant27-variant29-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:94,107:201:99:2428,0,2322:46,48,57,50
chr1	178063551	.	A	C	1152.8	PASS	AC=2;AF=1;AN=2;DP=1822;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1778,153,0:0,0,27,24
chr1	178252897	.	T	A	746.82	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:454,0,781:6,20,1,13
chr1	178408795	.	A	G	170.41	PASS	AC=1;AF=0.559;AN=2;DP=390;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant10-variant13-variant15-variant18-variant21-variant23-variant26-variant27-variant29-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:576,0,288:4,8,4,15
chr1	178421901	.	T	G	457.12	PASS	AC=1;AF=0.559;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant10-variant13-variant15-variant18-variant21-variant23-variant26-variant27-variant29-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:808,0,1172:19,26,17,19
chr1	178434937	.	T	TA	46.99	PASS	AC=1;AF=0.5;AN=2;DP=20;FractionInformativeReads=1;MQ=60;set=variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:90:90,0,124:5,0,3,1
chr1	178444613	.	T	G	2123.23	PASS	AC=1;AF=0.5;AN=2;DP=980;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant18-variant37	GT:AD:DP:GQ:PL:SB	0/1:128,137:265:99:3246,0,3011:68,60,69,68
chr1	178492447	.	T	A	1164.28	PASS	AC=1;AF=0.654;AN=2;DP=2809;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1473,0,1466:33,16,32,13
chr1	178492635	.	T	C	4060.39	PASS	AC=1;AF=0.654;AN=2;DP=10209;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,151:293:99:3749,0,3362:62,80,64,87
chr1	178513895	.	T	G	1061.26	PASS	AC=1;AF=0.586;AN=2;DP=1110;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:323,0,578:15,6,8,4
chr1	178514203	.	C	A	976.16	PASS	AC=1;AF=0.5;AN=2;DP=793;MQ=60;set=variant-variant4-variant11-variant14-variant15-variant21-variant25-variant27-variant29-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:1155,0,1065:16,24,11,31
chr1	178514560	.	A	AT	4042.69	PASS	AC=1;AF=0.586;AN=2;DP=5107;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,99:182:99:2668,0,2180:42,41,54,45
chr1	178515135	.	A	T	1662.77	PASS	AC=1;AF=0.586;AN=2;DP=1948;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,34:78:99:857,0,1153:17,27,13,21
chr1	178515187	.	A	G	1297.55	PASS	AC=1;AF=0.586;AN=2;DP=1768;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:772,0,970:15,23,12,16
chr1	178515312	.	G	A	181.85	PASS	AC=1;AF=0.613;AN=2;DP=264;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:316,0,214:0,6,1,8
chr1	178517005	.	G	C	217.62	PASS	AC=1;AF=0.5;AN=2;DP=388;MQ=60;set=variant-variant4-variant11-variant14-variant15-variant21-variant25-variant27-variant29-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:451,0,631:11,10,10,9
chr1	178517316	.	C	T	1684.7	PASS	AC=1;AF=0.586;AN=2;DP=2137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:1063,0,1067:20,22,17,21
chr1	178517591	.	A	G	3745.81	PASS	AC=1;AF=0.814;AN=2;DP=3971;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,57:132:99:1446,0,1937:38,37,33,24
chr1	178518008	.	A	G	9211.03	PASS	AC=1;AF=0.814;AN=2;DP=9323;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,124:257:99:3111,0,3136:52,81,57,67
chr1	178646752	.	A	C	1635.33	PASS	AC=2;AF=1;AN=2;DP=1728;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1429,150,0:0,0,27,23
chr1	178694279	.	TGC	T	1168.58	PASS	AC=2;AF=0.989;AN=2;DP=2000;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2279,181,0:0,0,47,13
chr1	178694322	.	C	A	1028.25	PASS	AC=2;AF=0.757;AN=2;DP=3404;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,112:113:99:3445,322,0:0,1,83,29
chr1	178694402	.	G	GGCA	11199.8	PASS	AC=2;AF=0.966;AN=2;DP=11222;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,306:306:99:13567,934,0:0,0,161,145
chr1	178745798	.	CTT	CT,C	176.18	PASS	AC=1,0;AF=0.679,0.038;AN=2;DP=2048;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:51:99:20,11,16,4
chr1	178746031	.	C	T	185.86	PASS	AC=1;AF=0.625;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant12-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant30-variant32-variant36-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:451,0,623:3,16,3,12
chr1	178776985	.	G	A	185.15	PASS	AC=2;AF=1;AN=2;DP=188;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:265,21,0:0,0,6,1
chr1	178780650	.	A	G	260.04	PASS	AC=1;AF=0.718;AN=2;DP=980;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:521,0,613:5,16,7,14
chr1	178820159	.	C	A	1094.16	PASS	AC=1;AF=0.718;AN=2;DP=3832;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,59:125:99:1554,0,1838:35,31,39,20
chr1	178854162	.	C	T	366.27	PASS	AC=1;AF=0.718;AN=2;DP=954;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:230,0,605:15,5,7,2
chr1	178858624	.	A	T	112.84	PASS	AC=1;AF=0.667;AN=2;DP=131;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant15-variant19-variant23-variant24-variant30-variant32-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:162,0,73:2,0,4,0
chr1	178858711	.	C	A	223.69	PASS	AC=1;AF=0.69;AN=2;DP=1384;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,14:58:99:286,0,1152:28,16,8,6
chr1	178858759	.	G	A	613.5	PASS	AC=1;AF=0.69;AN=2;DP=2359;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,44:105:99:1010,0,1452:35,26,24,20
chr1	178858891	.	A	G	479.07	PASS	AC=1;AF=0.5;AN=2;DP=136;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant30	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:507,0,840:11,21,7,15
chr1	178866674	.	A	G	118.66	PASS	AC=1;AF=0.625;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant12-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant30-variant32-variant36-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:261,0,273:7,1,7,2
chr1	178887208	.	A	T	1515.45	PASS	AC=1;AF=0.707;AN=2;DP=3665;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,64:140:99:1602,0,1980:46,30,41,23
chr1	178888856	.	A	G	4275.99	PASS	AC=1;AF=0.707;AN=2;DP=8227;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:173,176:349:99:4683,0,4304:81,92,88,88
chr1	179012947	.	C	G	727.97	PASS	AC=1;AF=0.5;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:994,0,848:20,8,21,12
chr1	179023601	.	G	T	515.66	PASS	AC=1;AF=0.5;AN=2;DP=233;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:503,0,370:10,5,13,1
chr1	179041011	.	A	G	2048.84	PASS	AC=1;AF=0.705;AN=2;DP=2338;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,26:70:99:629,0,1136:24,20,14,12
chr1	179041398	.	A	G	1499.52	PASS	AC=1;AF=0.705;AN=2;DP=2052;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:589,0,1107:17,17,12,12
chr1	179041692	.	CT	C	3530.04	PASS	AC=1;AF=0.705;AN=2;DP=5818;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,71:180:99:1357,0,2371:66,43,47,24
chr1	179042092	.	A	G	2244.32	PASS	AC=1;AF=0.5;AN=2;DP=2149;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:145,172:317:99:4149,0,3442:66,79,80,92
chr1	179042227	.	T	C	2911.19	PASS	AC=1;AF=0.658;AN=2;DP=2798;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,59:107:99:1824,0,1236:16,32,23,36
chr1	179042316	.	C	T	787.65	PASS	AC=1;AF=0.5;AN=2;DP=329;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,30:55:99:741,0,622:11,14,12,18
chr1	179042981	.	G	C	956.19	PASS	AC=1;AF=0.5;AN=2;DP=756;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,46:116:99:1247,0,2096:33,37,18,28
chr1	179043539	.	T	G	6280.99	PASS	AC=1;AF=0.705;AN=2;DP=5509;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,80:158:99:2483,0,2392:33,45,31,49
chr1	179043553	.	G	A	1730.12	PASS	AC=1;AF=0.5;AN=2;DP=1312;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,84:157:99:2515,0,2153:38,35,39,45
chr1	179044302	.	G	A	677.83	PASS	AC=1;AF=0.5;AN=2;DP=239;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:392,0,695:18,2,10,2
chr1	179045473	.	G	A	497.07	PASS	AC=1;AF=0.5;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:396,0,584:8,11,8,9
chr1	179045500	.	C	A	606.15	PASS	AC=1;AF=0.694;AN=2;DP=1046;FractionInformativeReads=1;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:378,0,466:7,8,5,9
chr1	179050478	.	T	C	111.21	PASS	AC=1;AF=0.5;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:282,0,139:4,2,7,4
chr1	179050593	.	C	A	480.42	PASS	AC=1;AF=0.5;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:635,0,617:17,14,14,14
chr1	179051300	.	T	C	3207.82	PASS	AC=1;AF=0.78;AN=2;DP=3437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,54:117:99:1519,0,1752:33,30,28,26
chr1	179054557	.	CA	C,CAA	89.07	PASS	AC=1,0;AF=0.409,0.106;AN=2;DP=2106;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant9-variant10-variant11-variant13-filterInvariant14-filterInvariant15-filterInvariant18-variant20-filterInvariant21-filterInvariant22-variant24-variant25-variant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-filterInvariant35-variant37-variant38-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:56:68:30,15,7,4
chr1	179054692	.	T	G	7903.21	PASS	AC=1;AF=0.731;AN=2;DP=11288;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,156:298:99:3650,0,3231:72,70,77,79
chr1	179055020	.	C	T	1454.24	PASS	AC=1;AF=0.5;AN=2;DP=1310;MQ=60;set=variant5-variant7-variant8-variant15-variant25-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,90:184:99:2127,0,2550:39,55,35,55
chr1	179064875	.	A	G	546.63	PASS	AC=1;AF=0.774;AN=2;DP=1025;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:285,0,414:8,8,7,7
chr1	179068612	.	C	T	1409.73	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=2.816;FractionInformativeReads=1;MQ=60;MQRankSum=0.255;QD=8.65;ReadPosRankSum=1.277;SOR=0.962;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:96,67:163:99:1438,0,2174:50,46,39,28
chr1	179068851	.	A	G	323.91	PASS	AC=1;AF=0.643;AN=2;DP=1499;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:626,0,859:12,18,8,15
chr1	179069429	.	C	T	3750.77	PASS	AC=1;AF=0.705;AN=2;DP=3523;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,65:116:99:1841,0,1484:28,23,36,29
chr1	179070120	.	C	T	1134.13	PASS	AC=1;AF=0.705;AN=2;DP=1883;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:852,0,593:9,13,15,14
chr1	179070334	.	C	G	1387.72	PASS	AC=1;AF=0.705;AN=2;DP=1578;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:767,0,967:19,17,15,17
chr1	179070512	.	C	CT,CTT	167.15	PASS	AC=1,0;AF=0.667,0.017;AN=2;DP=440;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:15:99:2,6,2,5
chr1	179071756	.	G	A	378.12	PASS	AC=1;AF=0.667;AN=2;DP=944;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,9:38:99:166,0,816:11,18,4,5
chr1	179071865	.	G	A	157.45	PASS	AC=1;AF=0.711;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:203,0,356:7,7,6,4
chr1	179071918	.	G	T	190.47	PASS	AC=1;AF=0.774;AN=2;DP=661;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:125,0,318:5,7,3,3
chr1	179072728	.	T	C	3877.52	PASS	AC=1;AF=0.643;AN=2;DP=9194;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:184,169:353:99:3976,0,4706:78,106,70,99
chr1	179072966	.	C	T	1597.8	PASS	AC=1;AF=0.705;AN=2;DP=1525;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:469,0,728:8,17,10,10
chr1	179073039	.	C	G	1075.65	PASS	AC=1;AF=0.786;AN=2;DP=1329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:726,0,406:7,11,9,15
chr1	179074869	.	T	G	465.92	PASS	AC=1;AF=0.643;AN=2;DP=2083;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:887,0,712:13,13,13,19
chr1	179075755	.	A	G	390.56	PASS	AC=2;AF=0.826;AN=2;DP=2014;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1679,144,0:0,0,25,23
chr1	179080115	.	CTTTT	CTT,CT,CTTT,C	982.21	PASS	AC=0,0,2,0;AF=0.303,0.289,0.118,0.013;AN=2;DP=2451;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:26:32:0,2,1,23
chr1	179084206	.	C	T	744.06	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.273;QD=18.6;ReadPosRankSum=1.787;SOR=0.627;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,29:40:99:772,0,241:3,8,9,20
chr1	179087934	.	T	C	2770.85	PASS	AC=1;AF=0.705;AN=2;DP=2578;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:962,0,826:14,20,7,27
chr1	179089213	.	C	T	1225.42	PASS	AC=1;AF=0.705;AN=2;DP=1269;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:493,0,401:10,2,12,6
chr1	179089475	.	C	G	1014.9	PASS	AC=1;AF=0.705;AN=2;DP=1105;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:424,0,589:3,16,6,11
chr1	179089491	.	A	C	821.69	PASS	AC=1;AF=0.705;AN=2;DP=879;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:203,0,557:2,15,4,6
chr1	179089518	.	C	G	450.08	PASS	AC=1;AF=0.716;AN=2;DP=440;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:108,0,187:2,5,2,3
chr1	179198589	.	C	T	917.7	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0.871;FractionInformativeReads=1;MQ=60;MQRankSum=0.133;QD=11.62;ReadPosRankSum=0.538;SOR=0.538;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:946,0,1188:27,17,20,15
chr1	179198653	.	T	C	1336.7	PASS	AC=1;AF=0.629;AN=2;DP=3961;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,84:153:99:2005,0,1507:42,27,45,39
chr1	179198767	.	ACGCCGCCGC	ACGCCGCCGCCGCCGCCGC,ACGCCGCCGCCGCCGC,ACGCCGC,A,ACGCCGCCGCCGCCGCCGCCGC	1617.13	PASS	AC=0,1,0,0,0;AF=0.05,0.383,0.167,0.017,0.017;AN=2;DP=3973;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41	GT:DP:GQ:SB	0/2:130:99:33,46,17,34
chr1	179198846	.	TCCCGCCCCCCGCCC	T	1271.05	PASS	AC=1;AF=0.571;AN=2;DP=350;MQ=60;set=variant7-variant8-variant15-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,32:39:99:1193,0,146:3,4,7,25
chr1	179263003	.	G	A	1423.11	PASS	AC=1;AF=0.536;AN=2;DP=2175;MQ=60;set=variant8-variant9-variant11-variant15-variant16-variant17-variant21-variant23-variant27-variant32-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,98:202:99:2119,0,2440:49,55,47,51
chr1	179292442	.	G	A	218.24	PASS	AC=2;AF=0.694;AN=2;DP=1076;MQ=60;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1000,104,0:0,0,22,13
chr1	179304892	.	T	C	468.23	PASS	AC=2;AF=0.694;AN=2;DP=1145;MQ=60;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:890,69,0:0,0,4,19
chr1	179308803	.	G	A	582.43	PASS	AC=1;AF=0.545;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant8-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:486,0,510:2,14,2,14
chr1	179310262	.	C	T	2246.35	PASS	AC=1;AF=0.536;AN=2;DP=2147;MQ=60;set=variant8-variant9-variant11-variant15-variant16-variant17-variant21-variant23-variant27-variant32-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,88:207:99:2225,0,3142:66,53,45,43
chr1	179310439	.	C	T	1426.34	PASS	AC=1;AF=0.525;AN=2;DP=2280;MQ=60;set=variant4-variant5-variant8-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:81,72:153:99:1900,0,2089:28,53,25,47
chr1	179312102	.	T	C	1540.37	PASS	AC=2;AF=0.735;AN=2;DP=4771;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5243,513,0:0,0,78,93
chr1	179312249	.	AT	A	404.92	PASS	AC=2;AF=0.735;AN=2;DP=976;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1229,99,0:0,0,7,26
chr1	179317895	.	ATGTGTGTGTGTGTGTGTGTGTGTGTG	ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTG,A,ATGTGTGTGTGTGTGTGTGTGTG,ATG,ATGTGTGTGTGTGTGTGTGTG,ATGTG,AAGTGTGTGTGTGTGTGTGTGTGTGTGTG	932.01	PASS	AC=0,0,2,0,0,0,0,0;AF=0.06,0.036,0.429,0.06,0.179,0.083,0.012,0.024;AN=2;DP=1333;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	3/3:40:99:0,0,33,7
chr1	179319580	.	T	C	3167.31	PASS	AC=2;AF=0.829;AN=2;DP=3936;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3814,352,0:0,0,38,80
chr1	179320665	.	A	G	511.47	PASS	AC=2;AF=0.667;AN=2;DP=1378;MQ=60;set=variant2-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2352,219,0:0,0,25,48
chr1	179323738	.	C	A	5454.01	PASS	AC=2;AF=0.829;AN=2;DP=7381;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:7758,737,0:0,0,140,106
chr1	179323919	.	A	G	7878.38	PASS	AC=2;AF=0.776;AN=2;DP=11737;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,336:336:99:10577,1004,0:0,0,178,158
chr1	179325506	.	A	G	2603.82	PASS	AC=2;AF=0.721;AN=2;DP=7131;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8819,842,0:0,0,102,180
chr1	179325633	.	A	G	939.58	PASS	AC=2;AF=0.847;AN=2;DP=604;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:742,51,0:0,0,0,17
chr1	179325657	.	GT	G	249.13	PASS	AC=2;AF=0.75;AN=2;DP=194;MQ=60;set=variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant27-variant28-variant32-variant35-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:172,18,0:0,0,1,5
chr1	179326065	.	A	C	690.08	PASS	AC=2;AF=0.721;AN=2;DP=1771;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2441,207,0:0,0,51,18
chr1	179326323	.	A	G	3381.76	PASS	AC=2;AF=0.829;AN=2;DP=5265;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:6098,577,0:0,0,68,125
chr1	179326397	.	C	G	932.39	PASS	AC=2;AF=0.829;AN=2;DP=1161;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1427,105,0:0,0,8,27
chr1	179326708	.	TAC	T	5277.59	PASS	AC=2;AF=0.721;AN=2;DP=9401;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,304:304:99:13597,915,0:0,0,138,166
chr1	179326747	.	C	A	6717.59	PASS	AC=2;AF=0.829;AN=2;DP=7740;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,236:236:99:7015,705,0:0,0,93,143
chr1	179327017	.	A	G	1042.29	PASS	AC=2;AF=0.721;AN=2;DP=3122;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3848,347,0:0,0,75,41
chr1	179334801	.	C	A	284.46	PASS	AC=1;AF=0.712;AN=2;DP=383;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:105,0,101:3,0,3,2
chr1	179334840	.	C	T	325.96	PASS	AC=1;AF=0.712;AN=2;DP=615;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:85:186,0,85:3,0,4,2
chr1	179334917	.	G	C	675.12	PASS	AC=1;AF=0.706;AN=2;DP=1452;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:312,0,618:14,9,8,5
chr1	179334984	.	A	G	1231.22	PASS	AC=2;AF=0.86;AN=2;DP=2237;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1762,186,0:0,0,31,31
chr1	179335058	.	C	T	528.99	PASS	AC=1;AF=0.712;AN=2;DP=1541;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,19:55:99:476,0,907:15,21,10,9
chr1	179335138	.	A	G	398.96	PASS	AC=1;AF=0.6;AN=2;DP=742;MQ=60;set=variant5-variant8-variant9-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant32-variant34-variant35-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,9:32:99:248,0,572:9,14,5,4
chr1	179335158	.	C	T	490.56	PASS	AC=1;AF=0.712;AN=2;DP=1039;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:310,0,966:7,12,5,4
chr1	179335162	.	G	C	493.55	PASS	AC=1;AF=0.712;AN=2;DP=1009;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:310,0,966:7,11,5,4
chr1	179335499	.	C	CT,CTT	173.24	PASS	AC=1,0;AF=0.485,0.015;AN=2;DP=744;set=variant2-variant3-variant5-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:28:99:11,9,5,3
chr1	179339334	.	G	A	500.32	PASS	AC=2;AF=0.793;AN=2;DP=674;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1045,87,0:0,0,5,24
chr1	179347832	.	T	C	559.07	PASS	AC=1;AF=0.722;AN=2;DP=3224;MQ=60;set=variant2-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,66:156:99:1333,0,2036:44,46,31,35
chr1	179348646	.	T	TG	2934.29	PASS	AC=1;AF=0.579;AN=2;DP=1133;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:669,0,816:9,17,8,14
chr1	179351606	.	G	C	103.53	PASS	AC=2;AF=0.797;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:406,30,0:0,0,7,3
chr1	179354304	.	A	G	759.32	PASS	AC=2;AF=0.782;AN=2;DP=995;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1293,102,0:0,0,28,6
chr1	179364391	.	A	G	519.57	PASS	AC=1;AF=0.674;AN=2;DP=1157;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant32-variant34-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:734,0,501:9,13,9,17
chr1	179380472	.	GT	G	1312.14	PASS	AC=2;AF=0.803;AN=2;DP=1841;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1668,165,0:0,0,21,34
chr1	179398563	.	C	G	452.04	PASS	AC=2;AF=0.811;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:722,57,0:0,0,16,3
chr1	179398875	.	T	A	752.02	PASS	AC=1;AF=0.553;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:422,0,422:3,11,2,12
chr1	179401379	.	CT	C	501	PASS	AC=1;AF=0.55;AN=2;DP=473;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:183,0,346:11,4,5,4
chr1	179401526	.	C	G	2126.92	PASS	AC=1;AF=0.55;AN=2;DP=680;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant12-variant15-variant20-variant24-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:662,0,1027:16,21,16,14
chr1	179401559	.	C	T	2249.25	PASS	AC=1;AF=0.553;AN=2;DP=1065;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:622,0,712:11,18,11,16
chr1	179401564	.	CT	C	2211.43	PASS	AC=2;AF=0.849;AN=2;DP=2353;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1627,141,0:0,0,17,30
chr1	179401599	.	C	T	808.04	PASS	AC=1;AF=0.553;AN=2;DP=567;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:481,0,408:5,10,1,13
chr1	179401896	.	G	A	502.42	PASS	AC=2;AF=0.806;AN=2;DP=484;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:884,81,0:0,0,17,10
chr1	179402037	.	C	CA	938.12	PASS	AC=1;AF=0.553;AN=2;DP=711;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-filterInvariant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:285,0,334:10,9,8,8
chr1	179414105	.	A	C	2707.62	PASS	AC=1;AF=0.553;AN=2;DP=1461;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:1150,0,1031:28,15,25,16
chr1	179418181	.	T	C	682.76	PASS	AC=1;AF=0.579;AN=2;DP=333;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:133,0,411:11,2,4,3
chr1	179437827	.	G	A	327.99	PASS	AC=2;AF=0.878;AN=2;DP=434;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:514,48,0:0,0,5,11
chr1	179452194	.	C	T	71.4	PASS	AC=1;AF=0.69;AN=2;DP=700;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:377,0,559:12,7,10,3
chr1	179462149	.	A	G	991.46	PASS	AC=2;AF=1;AN=2;DP=1158;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1070,84,0:0,0,4,24
chr1	179494612	.	CTACA	C,CTACATACA	166.99	PASS	AC=1,0;AF=0.611,0.019;AN=2;DP=707;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant32-variant33-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:18:99:1,5,4,8
chr1	179494665	.	C	T	103.54	PASS	AC=2;AF=0.913;AN=2;DP=400;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:502,42,0:0,0,2,12
chr1	179497359	.	T	C	422.99	PASS	AC=2;AF=0.915;AN=2;DP=499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:556,51,0:0,0,12,5
chr1	179503806	.	G	A	493.93	PASS	AC=1;AF=0.652;AN=2;DP=598;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant27-variant32-variant34-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:87:87,0,373:9,5,3,2
chr1	179504025	.	AAAGAAG	AAAG,A	1409.55	PASS	AC=1,0;AF=0.63,0.022;AN=2;DP=2325;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant27-variant32-variant34-variant35-variant39-variant40-variant44	GT:DP:GQ:SB	0/1:122:99:38,30,29,25
chr1	179504043	.	C	G	1716.82	PASS	AC=1;AF=0.652;AN=2;DP=2563;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant27-variant32-variant34-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,56:131:99:2061,0,5253:41,34,29,27
chr1	179504130	.	G	A	771.63	PASS	AC=1;AF=0.652;AN=2;DP=2432;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant27-variant32-variant34-variant35-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,37:112:99:859,0,1834:31,44,11,26
chr1	179519637	.	ATTTC	A	1123.37	PASS	AC=1;AF=0.5;AN=2;DP=1017;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant15-variant17-variant24-variant28-variant29-variant30-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,42:96:99:1527,0,2690:39,15,35,7
chr1	179519880	.	T	C	3153.95	PASS	AC=2;AF=0.94;AN=2;DP=4395;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,145:147:99:5517,392,0:1,1,55,90
chr1	179520050	.	T	C	3452.26	PASS	AC=1;AF=0.658;AN=2;DP=4662;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant27-variant32-variant34-variant35-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:165,134:299:99:3348,0,3951:85,80,68,66
chr1	179520151	.	C	T	6711.92	PASS	AC=2;AF=0.94;AN=2;DP=8825;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:6894,658,0:0,0,93,127
chr1	179520254	.	C	G	4563.96	PASS	AC=2;AF=0.735;AN=2;DP=4910;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4994,438,0:0,0,74,72
chr1	179520506	.	G	A	3198.23	PASS	AC=2;AF=0.735;AN=2;DP=3948;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4583,435,0:0,0,65,80
chr1	179521731	.	T	C	1055.16	PASS	AC=1;AF=0.5;AN=2;DP=442;MQ=60;set=variant5-variant8-variant13-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:46,62:108:99:1637,0,1182:32,14,39,23
chr1	179521932	.	G	T	1342.84	PASS	AC=1;AF=0.673;AN=2;DP=3004;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:60,57:117:99:1363,0,1536:24,36,21,36
chr1	179528917	.	G	A	1022.5	PASS	AC=1;AF=0.536;AN=2;DP=1601;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant15-variant17-variant24-variant28-variant29-variant30-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,73:142:99:1750,0,1795:30,39,30,43
chr1	179528942	.	G	A	933.08	PASS	AC=1;AF=0.536;AN=2;DP=1436;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant15-variant17-variant24-variant28-variant29-variant30-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,58:119:99:1408,0,1560:26,35,23,35
chr1	179544898	.	T	C	3368.49	PASS	AC=2;AF=0.965;AN=2;DP=5006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4022,405,0:0,0,62,73
chr1	179545050	.	C	A	838.31	PASS	AC=1;AF=0.5;AN=2;DP=933;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant17-variant24-variant28-variant29-variant30-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:936,0,846:15,20,16,20
chr1	179545115	.	G	A	186.39	PASS	AC=1;AF=0.658;AN=2;DP=645;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant27-variant32-variant34-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:669,0,510:9,9,8,13
chr1	179560624	.	T	C	719.65	PASS	AC=2;AF=0.965;AN=2;DP=1819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1152,116,0:0,0,25,14
chr1	179560718	.	T	C	759.96	PASS	AC=1;AF=0.675;AN=2;DP=2071;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant27-variant32-variant34-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,51:107:99:1243,0,1092:30,26,28,23
chr1	179561154	.	C	T	722.05	PASS	AC=1;AF=0.675;AN=2;DP=1072;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant27-variant32-variant34-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:668,0,809:16,17,14,14
chr1	179561645	.	A	C	597.61	PASS	AC=1;AF=0.821;AN=2;DP=2125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:632,0,1020:20,20,15,12
chr1	179561683	.	A	T	275.61	PASS	AC=1;AF=0.798;AN=2;DP=2730;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,26:70:99:474,0,1206:23,21,16,10
chr1	179562143	.	G	A	241.61	PASS	AC=1;AF=0.731;AN=2;DP=853;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:283,0,370:5,11,4,8
chr1	179562740	.	G	C	1849.32	PASS	AC=1;AF=0.673;AN=2;DP=4075;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant27-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,90:193:99:2087,0,2778:52,51,45,45
chr1	179590352	.	C	T	807.49	PASS	AC=1;AF=0.5;AN=2;DP=622;MQ=60;set=variant-variant5-variant7-variant12-variant15-variant22-variant24-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,22:64:99:573,0,1192:13,29,5,17
chr1	179604864	.	C	T	762.51	PASS	AC=1;AF=0.86;AN=2;DP=3871;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1096,0,1312:29,26,24,21
chr1	179605058	.	G	A	123.08	PASS	AC=1;AF=0.653;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:170,0,307:2,7,0,5
chr1	179620253	.	G	A	997.59	PASS	AC=1;AF=0.648;AN=2;DP=1659;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,40:90:99:986,0,1393:14,36,13,27
chr1	179631242	.	G	A	980.51	PASS	AC=1;AF=0.5;AN=2;DP=727;MQ=60;set=variant-variant5-variant7-variant12-variant15-variant22-variant24-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:866,0,756:19,13,20,18
chr1	179632347	.	A	C	42.64	PASS	AC=1;AF=0.66;AN=2;DP=248;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:186,0,281:7,1,5,0
chr1	179632727	.	G	A	122.47	PASS	AC=1;AF=0.676;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:273,0,226:0,6,0,7
chr1	179660458	.	C	G	122.92	PASS	AC=1;AF=0.55;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant12-variant15-variant17-variant22-variant24-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:70:163,0,70:0,2,1,4
chr1	179712223	.	A	C	596.86	PASS	AC=1;AF=0.596;AN=2;DP=1342;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,16:49:99:330,0,828:22,11,10,6
chr1	179712480	.	T	G	215.02	PASS	AC=1;AF=0.779;AN=2;DP=1553;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,15:47:99:385,0,834:14,18,4,11
chr1	179712616	.	G	T	152.64	PASS	AC=1;AF=0.708;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:354,0,401:6,9,9,8
chr1	179776841	.	A	G	106.19	PASS	AC=1;AF=0.581;AN=2;DP=585;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:194,0,459:10,7,6,1
chr1	179783922	.	T	A	1360.84	PASS	AC=1;AF=0.597;AN=2;DP=3767;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,70:172:99:1599,0,2465:49,53,33,37
chr1	179784071	.	C	T	889.68	PASS	AC=1;AF=0.5;AN=2;DP=386;MQ=60;set=variant15-variant23-variant31-variant33-variant36	GT:AD:DP:GQ:PL:SB	0/1:53,37:90:99:918,0,1372:20,33,13,24
chr1	179784249	.	G	C	205.79	PASS	AC=1;AF=0.5;AN=2;DP=180;set=variant2-variant4-variant6-variant15-variant23-variant29-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:230,0,1322:10,7,5,2
chr1	179811449	.	C	A	2033.5	PASS	AC=1;AF=0.5;AN=2;DP=172;FS=9.254;FractionInformativeReads=1;MQ=60;MQRankSum=-0.591;QD=11.82;ReadPosRankSum=-0.432;SOR=0.305;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:87,85:172:99:2062,0,2332:58,29,46,39
chr1	179811504	.	G	C	2817.31	PASS	AC=1;AF=0.571;AN=2;DP=1436;MQ=60;set=variant3-variant6-variant15-variant22-variant24-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,102:241:99:2226,0,3625:81,58,50,52
chr1	179812163	.	A	G	95.78	PASS	AC=2;AF=0.972;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQRankSum=-2.017;ReadPosRankSum=-1.368;set=variant3-variant7-variant8-variant10-variant12-variant15-variant17-variant20-variant22-variant23-variant25-variant28-variant29-variant31-variant33-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,4,1
chr1	179812183	.	CAAAAAA	C,CAA	43.7	PASS	AC=0,1;AF=0.143,0.5;AN=2;DP=42;set=variant-variant3-variant15-variant22-variant24-variant35-variant36	GT:DP:GQ:SB	0/2:4:8:1,0,2,1
chr1	179812955	.	CAA	C,CA	59.79	PASS	AC=0,1;AF=0.25,0.333;AN=2;DP=87;set=variant11-variant15-variant20-variant22-variant24-variant44	GT:DP:GQ:SB	0/2:10:45:1,3,6,0
chr1	179813352	.	C	T	1117.69	PASS	AC=1;AF=0.591;AN=2;DP=1537;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant22-variant24-variant28-variant29-variant34-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1361,0,1123:28,10,35,14
chr1	179813499	.	G	A	4161.59	PASS	AC=1;AF=0.591;AN=2;DP=5323;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant22-variant24-variant28-variant29-variant34-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,128:268:99:3518,0,3653:74,66,69,59
chr1	179813613	.	T	C	5944.45	PASS	AC=1;AF=0.611;AN=2;DP=9346;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant22-variant23-variant24-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:231,199:430:99:5056,0,5893:125,106,106,93
chr1	179814457	.	A	C	2845.85	PASS	AC=1;AF=0.583;AN=2;DP=6234;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant22-variant24-variant28-variant29-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,151:322:99:3796,0,4442:81,90,71,80
chr1	179816017	.	C	G	665.04	PASS	AC=1;AF=0.5;AN=2;DP=296;MQ=60;set=variant3-variant6-variant15-variant24-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:484,0,907:14,22,8,13
chr1	179851159	.	TG	T	891.05	PASS	AC=2;AF=0.943;AN=2;DP=2028;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1417,120,0:0,0,26,14
chr1	179852074	.	T	C	1014.94	PASS	AC=1;AF=0.763;AN=2;DP=4948;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,74:146:99:1678,0,1719:30,42,34,40
chr1	179852159	.	G	C	1743.42	PASS	AC=1;AF=0.5;AN=2;DP=402;MQ=60;set=variant3-variant6-variant15-variant24-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:1078,0,995:6,21,10,18
chr1	179852160	.	C	T	1743.42	PASS	AC=1;AF=0.5;AN=2;DP=392;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant15-variant24-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:1078,0,995:6,19,10,18
chr1	179852552	.	T	G	328.94	PASS	AC=1;AF=0.763;AN=2;DP=977;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:434,0,421:11,5,11,4
chr1	179854026	.	A	T	76.67	PASS	AC=1;AF=0.588;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant15-variant18-variant22-variant24-variant28-variant34-variant35-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:223,0,216:1,6,0,6
chr1	179858333	.	C	T	163.57	PASS	AC=1;AF=0.784;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:239,0,468:11,4,7,0
chr1	179858444	.	G	A	946.95	PASS	AC=1;AF=0.782;AN=2;DP=3261;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,48:128:99:1028,0,2120:46,34,29,19
chr1	179876900	.	A	T	1004.38	PASS	AC=1;AF=0.529;AN=2;DP=1027;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant15-variant16-variant18-variant19-variant20-variant22-variant26-variant30-variant32-variant34-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,39:68:99:889,0,619:17,12,23,16
chr1	179876988	.	C	G	1496.98	PASS	AC=1;AF=0.763;AN=2;DP=3368;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,43:77:99:1172,0,853:14,20,16,27
chr1	179877048	.	CT	CTT,CTTT,CTTTT,C	158.45	PASS	AC=0,1,0,0;AF=0.161,0.339,0.065,0.032;AN=2;DP=1506;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-filterInvariant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant43-variant44	GT:DP:GQ:SB	0/2:15:99:0,7,4,4
chr1	179887125	.	G	A	4147.48	PASS	AC=2;AF=0.943;AN=2;DP=5392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5470,486,0:0,0,80,82
chr1	179887681	.	G	C	3150.48	PASS	AC=1;AF=0.738;AN=2;DP=7318;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,108:235:99:2746,0,3388:64,63,56,52
chr1	179887788	.	C	T	4521.92	PASS	AC=1;AF=0.711;AN=2;DP=10469;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:172,158:330:99:4055,0,4701:93,79,86,72
chr1	179888228	.	G	C	539.78	PASS	AC=1;AF=0.788;AN=2;DP=704;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:154,0,388:2,10,0,5
chr1	179959750	.	A	G	618.37	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;MQ=60;set=variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:647,0,582:5,14,9,19
chr1	179983665	.	G	A	704.08	PASS	AC=1;AF=0.737;AN=2;DP=2309;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:993,0,953:7,27,10,29
chr1	179989742	.	G	C	1581.68	PASS	AC=1;AF=0.737;AN=2;DP=5415;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,87:174:99:2207,0,2097:41,46,46,41
chr1	179992076	.	A	G	490.22	PASS	AC=1;AF=0.878;AN=2;DP=551;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:90:90,0,419:1,10,0,3
chr1	179993793	.	T	C	283.47	PASS	AC=1;AF=0.905;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:145,0,243:2,6,1,4
chr1	180000680	.	G	C	239.53	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0;QD=15.97;ReadPosRankSum=-0.993;SOR=0.368;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:268,0,229:1,6,2,6
chr1	180010702	.	T	C	148.54	PASS	AC=1;AF=0.885;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:303,0,381:9,2,9,3
chr1	180013103	.	CT	C	680.21	PASS	AC=1;AF=0.583;AN=2;DP=88;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant24-variant26-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:313,0,272:6,2,7,2
chr1	180022343	.	T	G	498.71	PASS	AC=1;AF=0.737;AN=2;DP=2911;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1438,0,1486:19,38,12,41
chr1	180059736	.	GACATACCT	G	277.58	PASS	AC=1;AF=0.737;AN=2;DP=1004;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:1043,0,660:12,3,26,0
chr1	180059811	.	A	C	1790.14	PASS	AC=1;AF=0.737;AN=2;DP=3558;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,72:126:99:1687,0,1210:35,19,43,29
chr1	180080115	.	T	G	432.3	PASS	AC=1;AF=0.737;AN=2;DP=1612;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:603,0,825:18,8,16,7
chr1	180080629	.	C	T	10209.7	PASS	AC=1;AF=0.583;AN=2;DP=1658;MQ=60;set=variant3-variant15-variant24-variant26-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,152:288:99:3966,0,3452:74,62,87,65
chr1	180082703	.	C	CA	1924.9	PASS	AC=1;AF=0.737;AN=2;DP=5888;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,108:175:99:2474,0,1360:33,34,51,57
chr1	180124379	.	T	C	255.13	PASS	AC=1;AF=0.648;AN=2;DP=460;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:133,0,298:6,7,2,4
chr1	180144291	.	CAA	CAAA,C	849	PASS	AC=1,0;AF=0.634,0.012;AN=2;DP=1365;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:41:31:6,1,24,10
chr1	180145088	.	A	G	1173.7	PASS	AC=2;AF=0.989;AN=2;DP=3019;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2315,222,0:0,0,36,38
chr1	180155376	.	C	G	373.55	PASS	AC=2;AF=0.866;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:553,39,0:0,0,2,11
chr1	180155382	.	AG	A	187.41	PASS	AC=2;AF=0.977;AN=2;DP=518;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:33:475,33,0:0,0,1,9
chr1	180159797	.	TC	T	234.66	PASS	AC=2;AF=0.888;AN=2;DP=399;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:317,27,0:0,0,2,7
chr1	180167774	.	C	T	4400.71	PASS	AC=1;AF=0.583;AN=2;DP=772;MQ=60;set=variant3-variant11-variant15-variant26-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,66:155:99:1725,0,2286:39,50,25,41
chr1	180169330	.	C	T	2165.78	PASS	AC=2;AF=0.8;AN=2;DP=2995;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2711,275,0:0,0,49,43
chr1	180170361	.	C	T	791.46	PASS	AC=2;AF=0.817;AN=2;DP=1432;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1498,144,0:0,0,23,25
chr1	180171072	.	A	G	3519.3	PASS	AC=2;AF=0.8;AN=2;DP=4813;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4711,462,0:0,0,81,73
chr1	180171254	.	T	C	2636.36	PASS	AC=2;AF=0.845;AN=2;DP=3237;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2558,239,0:0,0,33,47
chr1	180171666	.	A	G	2955.62	PASS	AC=2;AF=0.8;AN=2;DP=4652;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5078,507,0:0,0,88,81
chr1	180171810	.	CAA	C,CA,CCAAAA,CAAA,CAAAA,CAAAAA	2053.67	PASS	AC=0,0,0,1,1,0;AF=0.026,0.192,0.013,0.244,0.256,0.013;AN=2;DP=3483;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	4/5:60:99:6,6,19,29
chr1	180172496	.	A	G	4313.93	PASS	AC=2;AF=0.845;AN=2;DP=4383;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:6686,474,0:0,0,74,83
chr1	180172512	.	T	C	3343.23	PASS	AC=2;AF=0.989;AN=2;DP=4299;FS=0;MQ=60;MQRankSum=-0.53;ReadPosRankSum=-0.598;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:6398,444,0:0,0,67,79
chr1	180173101	.	C	T	7295.82	PASS	AC=1;AF=0.583;AN=2;DP=1269;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant26-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,110:217:99:2842,0,2872:58,49,63,47
chr1	180173206	.	A	AATG,AATGATG,AATGATGATG	5038.4	PASS	AC=2,0,0;AF=0.762,0.071,0.012;AN=2;DP=8012;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:169:99:0,0,69,100
chr1	180180669	.	A	G	1767.22	PASS	AC=2;AF=0.791;AN=2;DP=2803;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1580,170,0:0,0,26,31
chr1	180180756	.	C	T	512.71	PASS	AC=1;AF=0.54;AN=2;DP=679;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant12-variant13-variant15-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:367,0,373:3,10,6,10
chr1	180199384	.	A	AAG,AG	567.9	PASS	AC=1,0;AF=0.58,0.02;AN=2;DP=407;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant31-variant32-variant33-variant36-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:13:99:4,3,5,1
chr1	180217136	.	G	A	150.2	PASS	AC=1;AF=0.583;AN=2;DP=211;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant15-variant16-variant21-variant26-variant29-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,270:7,0,6,1
chr1	180217152	.	C	T	299.16	PASS	AC=1;AF=0.583;AN=2;DP=260;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant15-variant16-variant21-variant26-variant29-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:267,0,285:8,1,7,0
chr1	180217192	.	C	A	613.42	PASS	AC=1;AF=0.583;AN=2;DP=516;MQ=60;set=variant-variant3-variant8-variant15-variant16-variant21-variant26-variant29-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:466,0,474:11,2,12,3
chr1	180217250	.	C	T	1185.03	PASS	AC=1;AF=0.583;AN=2;DP=945;MQ=60;set=variant-variant3-variant8-variant15-variant16-variant21-variant26-variant29-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:744,0,637:13,8,17,13
chr1	180235407	.	G	A	529.95	PASS	AC=1;AF=0.571;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant30-variant31-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:558,0,493:11,8,13,8
chr1	180240510	.	T	C	837.89	PASS	AC=1;AF=0.6;AN=2;DP=424;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:41,57:98:99:1387,0,932:22,19,31,26
chr1	180241155	.	G	T	316.67	PASS	AC=1;AF=0.5;AN=2;DP=140;MQ=60;set=variant15-variant25-variant30-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:345,0,374:6,8,4,9
chr1	180245228	.	T	TG	1801.2	PASS	AC=2;AF=0.955;AN=2;DP=2837;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2007,162,0:0,0,22,32
chr1	180245480	.	TTAAG	T	1081.54	PASS	AC=2;AF=0.943;AN=2;DP=1139;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1399,96,0:0,0,12,20
chr1	180245651	.	T	A	355.79	PASS	AC=1;AF=0.667;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:626,0,697:15,13,16,9
chr1	180245680	.	T	A	395.76	PASS	AC=1;AF=0.667;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:728,0,719:16,15,19,10
chr1	180245969	.	A	AG	513.74	PASS	AC=1;AF=0.75;AN=2;DP=79;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:28,18:46:99:260,0,731:16,12,14,4
chr1	180245972	.	G	GC	829.26	PASS	AC=1;AF=0.919;AN=2;DP=1776;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:687,0,510:14,5,16,12
chr1	180246013	.	TGTAA	T	973.76	PASS	AC=1;AF=0.919;AN=2;DP=1899;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,34:57:99:1345,0,852:10,13,19,15
chr1	180246261	.	C	T	1033.77	PASS	AC=1;AF=0.925;AN=2;DP=1431;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:334,0,404:11,7,6,6
chr1	180246451	.	G	A	243.11	PASS	AC=1;AF=0.85;AN=2;DP=1739;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,23:59:99:521,0,865:17,19,11,12
chr1	180247012	.	T	TG,TGG,TGGGG	1190.88	PASS	AC=1,0,0;AF=0.841,0.049,0.012;AN=2;DP=5749;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:187:99:57,61,48,21
chr1	180247477	.	CT	C	561.96	PASS	AC=2;AF=0.943;AN=2;DP=1190;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1272,102,0:0,0,19,15
chr1	180248436	.	T	A	70.66	PASS	AC=1;AF=0.854;AN=2;DP=477;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:68:161,0,68:1,2,2,4
chr1	180249307	.	T	C	509.6	PASS	AC=1;AF=0.75;AN=2;DP=198;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:487,0,569:11,13,11,11
chr1	180249395	.	C	T	124.68	PASS	AC=1;AF=0.75;AN=2;DP=80;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:229,0,189:3,5,3,6
chr1	180257692	.	A	C	1132.66	PASS	AC=2;AF=0.955;AN=2;DP=2032;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1564,150,0:0,0,18,32
chr1	180283659	.	T	C	295.67	PASS	AC=2;AF=0.976;AN=2;DP=468;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:615,51,0:0,0,14,3
chr1	180471054	.	C	A	43.97	PASS	AC=1;AF=0.536;AN=2;DP=805;set=filterInvariant4-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:386,0,594:17,0,12,2
chr1	180757056	.	A	G	332.98	PASS	AC=2;AF=0.524;AN=2;DP=987;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant12-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant32-variant34-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1688,153,0:0,0,16,35
chr1	180757117	.	G	GT	253.02	PASS	AC=2;AF=0.989;AN=2;DP=666;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:681,51,0:0,0,2,15
chr1	180803922	.	T	C	269.69	PASS	AC=2;AF=0.545;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant12-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant32-variant34-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:301,24,0:0,0,6,2
chr1	180853719	.	C	T	305.5	PASS	AC=2;AF=0.525;AN=2;DP=918;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant32-variant34-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1746,134,0:0,0,30,15
chr1	180853815	.	T	C	898.14	PASS	AC=2;AF=0.525;AN=2;DP=2101;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant32-variant34-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3626,363,0:0,0,66,55
chr1	180854067	.	A	G	9496.59	PASS	AC=2;AF=1;AN=2;DP=10414;FS=0;MQ=60;MQRankSum=1.677;ReadPosRankSum=1.654;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,303:303:99:9359,908,0:0,0,178,125
chr1	180854742	.	G	C	2888.81	PASS	AC=1;AF=0.5;AN=2;DP=209;FS=1.695;FractionInformativeReads=1;MQ=60;MQRankSum=-2.008;QD=13.82;ReadPosRankSum=-0.344;SOR=0.583;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:101,108:209:99:2917,0,2832:41,60,47,61
chr1	180857520	.	G	A	234.36	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:120,12:132:99:263,0,35133:68,52,12,0
chr1	180857522	.	ACCTCTT	A	270.32	PASS	AC=1;AF=0.5;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant15-filterInvariant24	GT:AD:DP:GQ:PL:SB	0/1:115,15:130:99:308,0,35095:66,49,15,0
chr1	180857529	.	ACTG	A	351.45	PASS	AC=1;AF=0.5;AN=2;DP=311;FractionInformativeReads=1;set=variant15-filterInvariant24	GT:AD:DP:GQ:PL:SB	0/1:106,16:122:99:389,0,34034:61,45,16,0
chr1	180857533	.	T	A	429.56	PASS	AC=1;AF=0.5;AN=2;DP=294;FractionInformativeReads=1;set=variant15-filterInvariant24	GT:AD:DP:GQ:PL:SB	0/1:92,16:108:99:458,0,32755:55,37,16,0
chr1	180857538	.	C	A	50.58	PASS	AC=1;AF=0.5;AN=2;DP=925;FractionInformativeReads=1;set=filterInvariant3-variant15-filterInvariant21-filterInvariant23-variant24-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:82,22:104:99:701,0,30845:49,33,22,0
chr1	180857541	.	T	A	176.55	PASS	AC=1;AF=0.5;AN=2;DP=1169;FractionInformativeReads=1;set=filterInvariant3-filterInvariant4-variant15-filterInvariant21-filterInvariant23-filterInvariant24-filterInvariant36-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:78,24:102:99:845,0,29636:47,31,24,0
chr1	180857542	.	T	A	216.49	PASS	AC=1;AF=0.5;AN=2;DP=1160;FractionInformativeReads=1;set=filterInvariant3-filterInvariant4-variant15-filterInvariant21-filterInvariant23-filterInvariant24-variant36-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:77,25:102:99:882,0,29412:46,31,25,0
chr1	180857543	.	G	A	222.51	PASS	AC=1;AF=0.5;AN=2;DP=1163;FractionInformativeReads=1;set=filterInvariant3-filterInvariant4-variant15-filterInvariant21-filterInvariant23-filterInvariant24-variant36-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:72,26:98:99:891,0,28749:42,30,26,0
chr1	180857544	.	AGTTTT	A	225.94	PASS	AC=1;AF=0.5;AN=2;DP=1174;FractionInformativeReads=1;set=filterInvariant3-filterInvariant4-variant15-filterInvariant21-filterInvariant23-variant24-variant36-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:72,27:99:99:897,0,28500:42,30,27,0
chr1	180859368	.	T	G	4721.09	PASS	AC=2;AF=0.521;AN=2;DP=10512;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,508:508:99:15668,1523,0:0,0,217,291
chr1	180885343	.	T	C	2555.38	PASS	AC=1;AF=0.5;AN=2;DP=243;FS=0.467;FractionInformativeReads=1;MQ=60;MQRankSum=0.616;QD=10.52;ReadPosRankSum=-0.403;SOR=0.651;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:130,113:243:99:2584,0,2840:67,63,57,56
chr1	180885430	.	T	C	3432.92	PASS	AC=2;AF=0.989;AN=2;DP=7598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:6305,596,0:0,0,97,102
chr1	180886810	.	C	G	673.06	PASS	AC=2;AF=0.522;AN=2;DP=982;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant14-variant15-variant21-variant22-variant23-variant24-variant29-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1881,174,0:0,0,41,17
chr1	180897521	.	C	T	1914.6	PASS	AC=2;AF=1;AN=2;DP=4086;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3537,347,0:0,0,63,53
chr1	180897569	.	C	T	755.63	PASS	AC=1;AF=0.615;AN=2;DP=2797;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,67:122:99:1687,0,1225:25,30,34,33
chr1	180897792	.	ATGC	A	397.77	PASS	AC=2;AF=0.679;AN=2;DP=1194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:79:1108,79,0:0,0,7,19
chr1	180905352	.	C	T	2425.71	PASS	AC=1;AF=0.6;AN=2;DP=8920;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:133,130:263:99:3242,0,3428:68,65,70,60
chr1	180905448	.	G	T	2060.08	PASS	AC=1;AF=0.625;AN=2;DP=10127;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:166,145:311:99:3799,0,4256:82,84,74,71
chr1	180905694	.	C	T	7409.32	PASS	AC=1;AF=0.568;AN=2;DP=4714;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant14-variant15-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,139:265:99:3381,0,3073:44,82,59,80
chr1	180913597	.	A	G	1553.13	PASS	AC=2;AF=1;AN=2;DP=6204;FS=0;MQ=60;MQRankSum=-0.019;ReadPosRankSum=1.546;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:5601,581,0:0,0,86,108
chr1	180914304	.	C	T	489.01	PASS	AC=2;AF=1;AN=2;DP=1001;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:672,62,0:0,0,17,4
chr1	180914966	.	C	T	300.13	PASS	AC=1;AF=0.559;AN=2;DP=248;MQ=60;set=variant2-variant5-variant8-variant9-variant11-variant12-variant15-variant17-variant20-variant21-variant23-variant25-variant31-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:343,0,219:4,6,5,7
chr1	180915244	.	GA	G	545.13	PASS	AC=2;AF=0.932;AN=2;DP=1010;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:761,81,0:0,0,19,8
chr1	180915977	.	C	G,T	3457.5	PASS	AC=0,1;AF=0.065,0.478;AN=2;DP=4803;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant36-variant37-variant38-variant41-variant43	GT:DP:GQ:SB	0/2:263:99:78,62,66,57
chr1	180916130	.	G	T	3555.36	PASS	AC=1;AF=0.583;AN=2;DP=2853;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant31-variant32-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,66:146:99:1613,0,2263:29,51,26,40
chr1	180917275	.	A	G	3442.05	PASS	AC=1;AF=0.58;AN=2;DP=1994;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1232,0,980:20,23,24,26
chr1	180917457	.	T	TCA	1716.38	PASS	AC=1;AF=0.5;AN=2;DP=326;MQ=60;set=variant11-variant15-variant17-variant25	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1867,0,2034:24,23,25,21
chr1	180917788	.	C	T	2570.75	PASS	AC=1;AF=0.583;AN=2;DP=1683;MQ=60;set=variant2-variant5-variant8-variant9-variant11-variant12-variant15-variant17-variant21-variant23-variant24-variant25-variant31-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,59:97:99:1595,0,1103:18,20,22,37
chr1	180918340	.	C	G	2831.05	PASS	AC=2;AF=1;AN=2;DP=4887;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4816,462,0:0,0,71,83
chr1	180918705	.	C	G	2472.2	PASS	AC=2;AF=0.716;AN=2;DP=2926;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2364,237,0:0,0,39,40
chr1	180919255	.	C	T	4205.56	PASS	AC=1;AF=0.556;AN=2;DP=2958;MQ=60;set=variant2-variant5-variant8-variant9-variant11-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant31-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:111,105:216:99:2517,0,2758:52,59,52,53
chr1	180920026	.	T	C	2185.49	PASS	AC=2;AF=0.795;AN=2;DP=3191;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2832,284,0:0,0,53,42
chr1	180920177	.	A	G	3652.56	PASS	AC=2;AF=0.795;AN=2;DP=4428;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:3922,410,0:0,0,68,69
chr1	180920340	.	AAACAAC	A	2629.71	PASS	AC=1;AF=0.556;AN=2;DP=1174;MQ=60;set=variant2-variant5-variant8-variant9-variant11-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant31-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:1221,0,2506:21,16,18,14
chr1	180920534	.	G	A	535.67	PASS	AC=1;AF=0.5;AN=2;DP=744;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant21-variant22-variant29-variant30-variant33-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:725,0,1060:20,13,13,13
chr1	180933498	.	C	T	1404.53	PASS	AC=2;AF=0.737;AN=2;DP=1810;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1878,155,0:0,0,39,13
chr1	180933602	.	C	T	1820.41	PASS	AC=1;AF=0.5;AN=2;DP=162;FS=0.582;FractionInformativeReads=1;MQ=53.15;MQRankSum=-5.576;QD=11.24;ReadPosRankSum=1.316;SOR=0.768;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:91,71:162:99:1849,0,2155:47,44,38,33
chr1	180942011	.	CA	C,CAA	154.99	PASS	AC=1,0;AF=0.458,0.042;AN=2;DP=1241;MQ=60;set=filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant22-variant25-filterInvariant27-variant30-filterInvariant32-variant33-variant37-filterInvariant40-variant42	GT:DP:GQ:SB	0/1:116:90:57,42,8,9
chr1	180943529	.	C	T	7448.33	PASS	AC=2;AF=0.763;AN=2;DP=7325;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,233:233:99:7348,697,0:0,0,124,109
chr1	180944532	.	T	TAA	13783.8	PASS	AC=2;AF=0.756;AN=2;DP=10890;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,324:324:99:13995,981,0:0,0,171,153
chr1	180945052	.	C	A	1433.63	PASS	AC=1;AF=0.5;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant15-variant17-variant24-variant25-variant40	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:1253,0,1308:30,19,33,16
chr1	180953853	.	A	G	4226.74	PASS	AC=2;AF=0.763;AN=2;DP=4922;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5190,524,0:0,0,95,80
chr1	180957130	.	C	A	374.75	PASS	AC=2;AF=0.878;AN=2;DP=292;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:167,12,0:0,0,4,0
chr1	180962282	.	A	G	601.88	PASS	AC=2;AF=0.763;AN=2;DP=550;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:804,63,0:0,0,18,3
chr1	180991665	.	C	G	2984.01	PASS	AC=1;AF=0.636;AN=2;DP=3690;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,70:144:99:1691,0,1974:49,25,46,24
chr1	181003340	.	A	AG	1025.85	PASS	AC=1;AF=0.553;AN=2;DP=1514;MQ=60;set=variant2-variant3-variant4-variant5-variant12-variant13-variant14-variant15-variant21-variant23-variant26-variant28-variant30-variant32-variant33-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,41:95:99:1230,0,1724:20,34,18,23
chr1	181018236	.	A	G	5051.37	PASS	AC=1;AF=0.577;AN=2;DP=1797;FractionInformativeReads=1;set=variant3-variant5-variant12-variant14-variant15-variant17-variant18-variant21-variant25-variant28-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:84,67:151:99:1756,0,2227:37,47,29,38
chr1	181022517	.	CAA	CA,C,CAAA	377.49	PASS	AC=1,0,0;AF=0.521,0.021,0.021;AN=2;DP=537;set=variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant31-variant32-variant33-filterInvariant35-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:26:99:8,4,13,1
chr1	181022895	.	C	A	372.67	PASS	AC=1;AF=0.625;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:352,0,292:1,7,1,10
chr1	181024404	.	G	A	4817.1	PASS	AC=1;AF=0.619;AN=2;DP=2748;MQ=60;set=variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1806,0,1576:36,31,41,30
chr1	181025110	.	T	C	809.77	PASS	AC=1;AF=0.667;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant25-variant28-variant33-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:645,0,517:10,10,11,9
chr1	181025500	.	AAATAATAATAATAAT	A	153.49	PASS	AC=1;AF=0.813;AN=2;DP=34;FS=0;MQ=60;set=variant3-variant6-variant14-variant15-variant20-variant21-variant25-variant26	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:81:81,0,154:1,0,2,0
chr1	181026238	.	G	A	269.69	PASS	AC=1;AF=0.742;AN=2;DP=263;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:57:205,0,57:2,0,5,1
chr1	181026256	.	CA	C	309.19	PASS	AC=1;AF=0.75;AN=2;DP=409;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:52:170,0,52:3,0,7,1
chr1	181026558	.	G	A	6266.42	PASS	AC=1;AF=0.73;AN=2;DP=6471;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,92:196:99:2224,0,2605:48,56,42,50
chr1	181026704	.	C	T	2210.2	PASS	AC=1;AF=0.743;AN=2;DP=1834;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,17:60:99:452,0,1153:15,28,4,13
chr1	181027086	.	T	C	106.77	PASS	AC=2;AF=0.857;AN=2;DP=178;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:189,18,0:0,0,4,2
chr1	181027327	.	T	A	7184.13	PASS	AC=1;AF=0.757;AN=2;DP=8611;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:172,134:306:99:3094,0,3973:90,82,78,56
chr1	181027444	.	CT	C,CTT	65.92	PASS	AC=1,0;AF=0.409,0.091;AN=2;DP=2208;set=filterInvariant2-filterInvariant3-filterInvariant8-variant10-filterInvariant12-variant13-filterInvariant15-filterInvariant26-variant32-filterInvariant40-variant42	GT:DP:GQ:SB	0/1:170:99:52,90,11,17
chr1	181027559	.	G	A	6726.61	PASS	AC=1;AF=0.577;AN=2;DP=2098;MQ=60;set=variant3-variant5-variant12-variant14-variant15-variant17-variant18-variant21-variant25-variant28-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,89:175:99:2313,0,2280:39,47,43,46
chr1	181027841	.	A	G	1855.69	PASS	AC=1;AF=0.75;AN=2;DP=2319;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,33:80:99:915,0,1188:20,27,18,15
chr1	181028733	.	T	C	4309.65	PASS	AC=1;AF=0.75;AN=2;DP=3588;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:1593,0,1696:31,27,36,23
chr1	181029053	.	C	T	1922.11	PASS	AC=1;AF=0.75;AN=2;DP=2001;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:1202,0,984:7,23,6,29
chr1	181029805	.	C	T	418.58	PASS	AC=1;AF=0.615;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant12-variant14-variant15-variant17-variant18-variant21-variant25-variant28-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:268,0,138:2,4,4,8
chr1	181030115	.	C	T	134.73	PASS	AC=1;AF=0.757;AN=2;DP=516;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:378,0,205:3,5,7,8
chr1	181030499	.	A	G	1390.84	PASS	AC=1;AF=0.75;AN=2;DP=1607;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,13:46:99:385,0,966:22,11,11,2
chr1	181031172	.	T	C	1564.68	PASS	AC=1;AF=0.75;AN=2;DP=1326;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:676,0,639:3,17,3,18
chr1	181057874	.	T	G	7639.5	PASS	AC=1;AF=0.744;AN=2;DP=9609;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,148:300:99:3567,0,3552:76,76,70,78
chr1	181058643	.	A	G	1336.9	PASS	AC=2;AF=0.989;AN=2;DP=1389;FractionInformativeReads=1;MQ=60;MQRankSum=0;ReadPosRankSum=1.448;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1938,171,0:0,0,31,26
chr1	181144597	.	C	G	331.12	PASS	AC=1;AF=0.548;AN=2;DP=538;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant20-variant21-variant23-variant25-variant27-variant28-variant33-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:258,0,345:4,9,2,7
chr1	181151080	.	G	C	231.1	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant22-variant25-variant26-variant33	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:259,0,332:9,4,6,4
chr1	181680028	.	C	T	1606.1	PASS	AC=1;AF=0.5;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:40,67:107:99:1634,0,913:21,19,37,30
chr1	181680082	.	G	A	1209.09	PASS	AC=1;AF=0.533;AN=2;DP=1760;MQ=60;set=variant2-variant3-variant7-variant8-variant11-variant14-variant15-variant17-variant28-variant29-variant33-variant34-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:81,69:150:99:1566,0,1849:40,41,37,32
chr1	181684605	.	A	G	731.08	PASS	AC=2;AF=0.814;AN=2;DP=3113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3399,338,0:0,0,43,70
chr1	181685432	.	TA	T,TAA	41.33	PASS	AC=0,1;AF=0.075,0.45;AN=2;DP=311;set=variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant35-variant36-variant37-variant43	GT:DP:GQ:SB	0/2:13:99:2,4,3,4
chr1	181686216	.	T	C	1740.39	PASS	AC=2;AF=0.744;AN=2;DP=6537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6026,584,0:0,0,119,76
chr1	181693319	.	C	T	328.65	PASS	AC=1;AF=0.536;AN=2;DP=173;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant14-variant15-variant28-variant29-variant33-variant34-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:401,0,251:7,0,10,2
chr1	181719679	.	C	T	884.14	PASS	AC=1;AF=0.625;AN=2;DP=3168;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,60:103:99:1444,0,993:18,25,23,37
chr1	181725110	.	T	C	842.15	PASS	AC=1;AF=0.521;AN=2;DP=2226;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,55:115:99:1244,0,1463:31,29,28,27
chr1	181726413	.	G	A	246.92	PASS	AC=2;AF=0.814;AN=2;DP=1059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,32:33:58:1081,58,0:1,0,8,24
chr1	181727030	.	A	T	1796.69	PASS	AC=1;AF=0.5;AN=2;DP=4029;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:110,108:218:99:2608,0,2797:61,49,59,49
chr1	181727273	.	G	A	595.08	PASS	AC=1;AF=0.613;AN=2;DP=2418;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,55:86:99:1360,0,728:13,18,19,36
chr1	181731667	.	T	TC	790.99	PASS	AC=1;AF=0.5;AN=2;DP=1524;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1254,0,1427:29,17,33,11
chr1	181732695	.	A	G	324.16	PASS	AC=1;AF=0.5;AN=2;DP=1468;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,36:82:99:877,0,1254:22,24,14,22
chr1	181741301	.	C	T	1562.65	PASS	AC=1;AF=0.523;AN=2;DP=4061;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:116,92:208:99:2270,0,2747:62,54,50,42
chr1	181745580	.	G	A	621.75	PASS	AC=1;AF=0.523;AN=2;DP=1561;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,29:83:99:713,0,1596:17,37,10,19
chr1	181750469	.	G	T	943.44	PASS	AC=1;AF=0.603;AN=2;DP=1458;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,44:79:99:1187,0,844:20,15,25,19
chr1	181752769	.	AT	ATT,A	628.85	PASS	AC=1,0;AF=0.532,0.016;AN=2;DP=1816;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant44	GT:DP:GQ:SB	0/1:64:99:18,21,13,12
chr1	181752783	.	T	TG,TTG	498.01	PASS	AC=1,0;AF=0.5,0.045;AN=2;DP=709;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:85:99:26,20,18,21
chr1	181752923	.	AAGCTT	A	1318.59	PASS	AC=2;AF=0.775;AN=2;DP=3596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5197,356,0:0,0,51,67
chr1	181754314	.	G	C	90.96	PASS	AC=1;AF=0.545;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:84:84,0,327:9,1,3,2
chr1	181754803	.	C	T	1798.79	PASS	AC=1;AF=0.545;AN=2;DP=1652;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,101:194:99:2230,0,2053:48,45,59,42
chr1	181759443	.	T	TTA,TA,TTTA	101.44	PASS	AC=1,0,0;AF=0.167,0.222,0.111;AN=2;DP=183;MQ=60;set=variant9-variant14-variant15-variant16-variant17-variant18-variant24-variant35-variant36	GT:DP:GQ:SB	0/1:28:99:11,2,13,2
chr1	181759473	.	T	A	719.62	PASS	AC=1;AF=0.545;AN=2;DP=519;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:616,0,763:20,9,17,6
chr1	181759657	.	G	A	1986.51	PASS	AC=1;AF=0.603;AN=2;DP=4278;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,55:133:99:1296,0,2214:34,44,23,32
chr1	181767595	.	C	T	2324.74	PASS	AC=1;AF=0.5;AN=2;DP=185;FS=0.539;FractionInformativeReads=1;MQ=60;MQRankSum=1.44;QD=12.57;ReadPosRankSum=-2.466;SOR=0.678;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:98,87:185:99:2353,0,2448:48,50,44,43
chr1	181768186	.	T	C	671.04	PASS	AC=1;AF=0.5;AN=2;DP=135;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:685,0,525:11,11,10,16
chr1	181768947	.	C	CAG	703.27	PASS	AC=1;AF=0.782;AN=2;DP=1818;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:1325,0,1339:19,15,19,15
chr1	181768985	.	G	A	827.97	PASS	AC=1;AF=0.763;AN=2;DP=2163;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:1047,0,944:17,17,22,15
chr1	181769287	.	G	A	544.74	PASS	AC=1;AF=0.5;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,49:77:99:1339,0,763:13,15,20,29
chr1	181771098	.	T	TTTAG	703.09	PASS	AC=1;AF=0.575;AN=2;DP=1197;MQ=60;set=variant-variant3-variant8-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant32-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:1246,0,1414:14,12,16,14
chr1	181771992	.	A	G	617.24	PASS	AC=1;AF=0.575;AN=2;DP=1044;MQ=60;set=variant-variant3-variant8-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant32-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,39:68:99:1238,0,741:13,16,23,16
chr1	181772404	.	T	TTGA	3658.75	PASS	AC=1;AF=0.556;AN=2;DP=1595;MQ=60;set=variant6-variant7-variant9-variant15-variant17-variant18-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:128,77:205:99:3095,0,23734:68,60,40,37
chr1	181772407	.	C	CAGGAAAGAAGGAAG	4015.34	PASS	AC=1;AF=0.556;AN=2;DP=1630;MQ=60;set=variant6-variant7-variant9-variant15-variant17-variant18-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:129,85:214:99:3346,0,23717:68,61,45,40
chr1	181772559	.	T	C	1115.16	PASS	AC=1;AF=0.5;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,45:119:99:1143,0,2197:25,49,12,33
chr1	181774060	.	TA	TAA,T	1459.26	PASS	AC=0,1;AF=0.3,0.2;AN=2;DP=702;MQ=60;set=variant4-filterInvariant6-variant15-variant17-variant37	GT:DP:GQ:SB	0/2:153:99:43,38,36,36
chr1	181774370	.	A	C	2669.3	PASS	AC=1;AF=0.8;AN=2;DP=5739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,94:182:99:2675,0,2561:65,23,61,33
chr1	181775052	.	C	A	64.62	PASS	AC=1;AF=0.8;AN=2;DP=1529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:687,0,524:10,13,16,11
chr1	181775260	.	G	A	677.42	PASS	AC=1;AF=0.5;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:706,0,914:17,10,14,11
chr1	181776078	.	A	AG	1234.07	PASS	AC=2;AF=1;AN=2;DP=1699;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1569,126,0:0,0,11,31
chr1	182023638	.	T	C	411.76	PASS	AC=1;AF=0.5;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant-variant11-variant15-variant17-variant20-variant28-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:228,0,736:18,2,7,2
chr1	182024853	.	C	G	469.3	PASS	AC=1;AF=0.5;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant17-variant20-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:366,0,721:18,13,11,7
chr1	182026813	.	G	C	912.32	PASS	AC=1;AF=0.5;AN=2;DP=1142;MQ=60;set=variant-variant11-variant15-variant17-variant20-variant28-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,64:137:99:1624,0,1905:31,42,25,39
chr1	182027022	.	C	T	1280.19	PASS	AC=1;AF=0.5;AN=2;DP=1086;MQ=60;set=variant-variant11-variant15-variant17-variant20-variant28-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,63:142:99:1540,0,2012:37,42,36,27
chr1	182030693	.	G	A	547.05	PASS	AC=1;AF=0.5;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant-variant11-variant15-variant17-variant20-variant28-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,42:72:99:1036,0,733:18,12,25,17
chr1	182350896	.	C	G	3103.69	PASS	AC=1;AF=0.794;AN=2;DP=5183;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,94:208:99:3556,0,6200:82,32,61,33
chr1	182350909	.	C	T	3434.27	PASS	AC=1;AF=0.6;AN=2;DP=3581;MQ=60;set=variant-variant9-variant10-variant12-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:135,109:244:99:3960,0,6676:92,43,69,40
chr1	182351233	.	G	A	4006.98	PASS	AC=1;AF=0.794;AN=2;DP=9429;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,145:330:99:3479,0,4658:80,105,61,84
chr1	182351422	.	A	G	1649.51	PASS	AC=2;AF=1;AN=2;DP=3080;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3188,282,0:0,0,42,52
chr1	182351627	.	T	A	4271.33	PASS	AC=1;AF=0.909;AN=2;DP=4338;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,61:133:99:2351,0,8119:45,27,36,25
chr1	182351630	.	T	TAAATGA	4566.23	PASS	AC=1;AF=0.92;AN=2;DP=4415;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,61:135:99:2525,0,8104:47,27,36,25
chr1	182352621	.	T	C	817.14	PASS	AC=1;AF=0.794;AN=2;DP=2374;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,40:76:99:1073,0,874:20,16,22,18
chr1	182353198	.	A	T	95.61	PASS	AC=1;AF=0.794;AN=2;DP=1297;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:289,0,421:9,9,7,7
chr1	182354850	.	A	G	330.57	PASS	AC=1;AF=0.794;AN=2;DP=1017;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:757,0,599:7,10,6,15
chr1	182355046	.	A	G	823.87	PASS	AC=1;AF=0.794;AN=2;DP=4951;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,66:139:99:1548,0,1805:35,38,32,34
chr1	182356399	.	A	G	1466.96	PASS	AC=1;AF=0.794;AN=2;DP=3389;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,77:137:99:1844,0,1375:32,28,41,36
chr1	182359578	.	A	C	95.31	PASS	AC=1;AF=0.8;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:216,0,228:6,2,7,3
chr1	182359924	.	CGTT	C	1915.07	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=2.616;FractionInformativeReads=0.98;MQ=60;MQRankSum=-0.808;QD=18.96;ReadPosRankSum=0.318;SOR=1;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1952,0,2382:25,24,29,21
chr1	182360169	.	T	G	543.31	PASS	AC=1;AF=0.794;AN=2;DP=1509;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,11:59:99:278,0,1259:24,24,4,7
chr1	182360202	.	A	C	861.93	PASS	AC=1;AF=0.794;AN=2;DP=1935;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,20:73:99:562,0,1453:29,24,16,4
chr1	182360223	.	G	T	868.51	PASS	AC=1;AF=0.794;AN=2;DP=2377;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,28:97:99:707,0,1835:41,28,21,7
chr1	182360315	.	C	T	1359.08	PASS	AC=1;AF=0.6;AN=2;DP=2979;MQ=60;set=variant-variant9-variant10-variant12-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:111,89:200:99:1937,0,2772:65,46,51,38
chr1	182360632	.	A	G	4027.68	PASS	AC=1;AF=0.898;AN=2;DP=5809;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,63:143:99:1547,0,1732:39,41,25,38
chr1	182360843	.	C	G	1628.32	PASS	AC=1;AF=0.92;AN=2;DP=2974;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,47:73:99:1125,0,628:12,14,22,25
chr1	182360930	.	A	G	1324.68	PASS	AC=1;AF=0.92;AN=2;DP=2114;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:642,0,412:9,7,10,15
chr1	182361478	.	T	C	485.57	PASS	AC=1;AF=0.902;AN=2;DP=370;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:188,0,157:1,4,0,5
chr1	182367548	.	G	A	1928.73	PASS	AC=1;AF=0.794;AN=2;DP=4630;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,76:140:99:1904,0,1583:25,39,29,47
chr1	182367643	.	A	G	634.2	PASS	AC=1;AF=0.794;AN=2;DP=1565;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:659,0,749:8,16,11,14
chr1	182367893	.	A	G	2267.5	PASS	AC=1;AF=0.794;AN=2;DP=7196;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,136:252:99:3390,0,2685:54,62,64,72
chr1	182369078	.	G	A	3157.46	PASS	AC=1;AF=0.909;AN=2;DP=6398;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,101:185:99:2729,0,2241:47,37,58,43
chr1	182369233	.	A	G	2847.08	PASS	AC=1;AF=0.794;AN=2;DP=9525;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,157:313:99:3923,0,3970:80,76,77,80
chr1	182369738	.	G	A	489.03	PASS	AC=1;AF=0.909;AN=2;DP=1240;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:486,0,436:3,10,10,13
chr1	182429295	.	CTG	C,CTGTG	605.61	PASS	AC=1,0;AF=0.706,0.015;AN=2;DP=2190;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant42-variant44	GT:DP:GQ:SB	0/1:66:99:5,24,9,28
chr1	182429728	.	T	C	694.02	PASS	AC=1;AF=0.692;AN=2;DP=2103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:603,0,678:18,6,16,7
chr1	182491107	.	A	C	1107.38	PASS	AC=2;AF=0.886;AN=2;DP=1261;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1146,90,0:0,0,26,4
chr1	182496829	.	A	G	1146.38	PASS	AC=1;AF=0.615;AN=2;DP=2691;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,58:107:99:1369,0,1210:20,29,22,36
chr1	182501933	.	C	A	5592.27	PASS	AC=2;AF=0.736;AN=2;DP=6474;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:5772,586,0:0,0,101,95
chr1	182502033	.	G	T	3237.63	PASS	AC=2;AF=0.86;AN=2;DP=3704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,94:95:99:2827,244,0:1,0,34,60
chr1	182509269	.	G	A	1588.09	PASS	AC=2;AF=0.875;AN=2;DP=1728;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1530,141,0:0,0,35,12
chr1	182509292	.	A	G	652.15	PASS	AC=1;AF=0.643;AN=2;DP=2033;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1304,0,887:25,11,32,14
chr1	182509617	.	C	A	192.1	PASS	AC=1;AF=0.643;AN=2;DP=729;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:457,0,490:1,13,1,12
chr1	182517238	.	C	A	103.54	PASS	AC=1;AF=0.68;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:75:80,0,75:2,2,3,1
chr1	182517357	.	G	C	376.07	PASS	AC=1;AF=0.643;AN=2;DP=1186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:371,0,617:16,3,8,8
chr1	182520362	.	TCA	T	889.3	PASS	AC=1;AF=0.55;AN=2;DP=655;MQ=60;set=variant-variant6-variant7-variant10-variant15-variant17-variant19-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:53,27:80:99:940,0,2172:22,31,12,15
chr1	182522552	.	C	T	1380.22	PASS	AC=1;AF=0.583;AN=2;DP=1818;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant30-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:1201,0,1274:26,23,25,24
chr1	182522762	.	C	A	989.64	PASS	AC=1;AF=0.55;AN=2;DP=804;MQ=60;set=variant-variant6-variant7-variant10-variant15-variant17-variant19-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:58,34:92:99:780,0,1514:27,31,13,21
chr1	182542826	.	G	A	9463.11	PASS	AC=2;AF=0.989;AN=2;DP=9411;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,281:281:99:8694,842,0:0,0,161,120
chr1	182543175	.	G	A	7371.26	PASS	AC=2;AF=0.989;AN=2;DP=8740;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:8057,728,0:0,0,85,158
chr1	182549019	.	A	G	2285.32	PASS	AC=2;AF=0.886;AN=2;DP=6930;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4644,466,0:0,0,73,83
chr1	182551337	.	A	C	1698.25	PASS	AC=1;AF=0.645;AN=2;DP=4273;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,71:141:99:1701,0,1672:40,30,36,35
chr1	182554557	.	C	T	2205.64	PASS	AC=1;AF=0.614;AN=2;DP=3891;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant27-variant29-variant30-variant32-variant34-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,92:173:99:2492,0,2063:36,45,43,49
chr1	182556036	.	A	G	240.07	PASS	AC=1;AF=0.614;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant27-variant29-variant30-variant32-variant34-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:435,0,507:8,10,7,9
chr1	182558137	.	T	C	373.54	PASS	AC=1;AF=0.711;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant24-variant27-variant29-variant30-variant32-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:295,0,210:6,1,7,1
chr1	182558398	.	T	C	1050.25	PASS	AC=2;AF=1;AN=2;DP=1323;FS=0;MQ=60;MQRankSum=0.545;ReadPosRankSum=-0.149;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:862,84,0:0,0,10,18
chr1	182558516	.	A	G	134.87	PASS	AC=1;AF=0.75;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant27-variant29-variant34-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:182,0,112:2,3,1,5
chr1	182568204	.	G	C	716.98	PASS	AC=2;AF=0.943;AN=2;DP=2044;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1569,141,0:0,0,29,18
chr1	182568729	.	C	G	749.06	PASS	AC=1;AF=0.736;AN=2;DP=2064;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,37:77:99:823,0,905:19,21,19,18
chr1	182569291	.	ATTTTT	ATTTT,ATT,ATTTTTT,ATTT,A,AT	42.85	PASS	AC=0,1,0,0,0,0;AF=0.205,0.114,0.068,0.091,0.023,0.023;AN=2;DP=622;set=filterInvariant3-variant4-variant5-variant7-variant8-variant11-variant12-variant15-filterInvariant16-variant17-variant21-variant24-variant26-variant27-variant28-variant29-variant30-filterInvariant33-variant34-variant40-variant42-filterInvariant43	GT:DP:GQ:SB	0/2:28:99:8,10,2,8
chr1	182569626	.	T	C	486.88	PASS	AC=2;AF=0.955;AN=2;DP=4087;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2521,245,0:0,0,37,45
chr1	182571003	.	C	T	295.55	PASS	AC=1;AF=0.743;AN=2;DP=682;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:284,0,473:9,5,9,2
chr1	182571277	.	C	T	999.16	PASS	AC=1;AF=0.66;AN=2;DP=2622;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant25-variant26-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,54:129:99:1177,0,1794:33,42,29,25
chr1	182573227	.	T	C	1970.84	PASS	AC=2;AF=0.955;AN=2;DP=6551;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4439,440,0:0,0,90,57
chr1	182758863	.	G	T	594.87	PASS	AC=1;AF=0.5;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant15-variant22-variant27-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,37:88:99:767,0,1225:29,22,20,17
chr1	182761428	.	G	T	180.84	PASS	AC=1;AF=0.5;AN=2;DP=161;MQ=60;set=variant9-variant13-variant15-variant22-variant27-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:296,0,276:5,6,6,6
chr1	182763605	.	A	T	940.31	PASS	AC=1;AF=0.5;AN=2;DP=587;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant15-variant22-variant27-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1490,0,1139:25,26,22,34
chr1	182778367	.	G	A	2340.89	PASS	AC=2;AF=0.989;AN=2;DP=3089;FractionInformativeReads=1;MQRankSum=1.175;ReadPosRankSum=-0.914;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2705,273,0:0,0,39,52
chr1	182784022	.	T	C	1376.18	PASS	AC=1;AF=0.652;AN=2;DP=3429;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,62:122:99:1688,0,1542:24,36,23,39
chr1	182808646	.	C	G	1339.72	PASS	AC=2;AF=0.966;AN=2;DP=2202;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1777,157,0:0,0,19,34
chr1	182850727	.	T	C	2730.61	PASS	AC=2;AF=0.977;AN=2;DP=2973;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2613,231,0:0,0,38,39
chr1	182854017	.	G	A	402.69	PASS	AC=1;AF=0.768;AN=2;DP=1570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:906,0,824:10,22,6,24
chr1	182873431	.	C	T	2556.97	PASS	AC=1;AF=0.5;AN=2;DP=579;MQ=60;set=variant15-variant22-variant34	GT:AD:DP:GQ:PL:SB	0/1:114,110:224:99:2585,0,2906:57,57,52,58
chr1	182993025	.	C	T	4834.73	PASS	AC=1;AF=0.645;AN=2;DP=12288;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:205,227:432:99:5482,0,4916:107,98,120,107
chr1	183072590	.	T	C	1534.32	PASS	AC=1;AF=0.667;AN=2;DP=7222;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,116:232:99:2863,0,3137:51,65,59,57
chr1	183072786	.	G	T	2075.54	PASS	AC=1;AF=0.5;AN=2;DP=149;FS=2.981;FractionInformativeReads=1;MQ=60;MQRankSum=0.761;QD=13.93;ReadPosRankSum=0.343;SOR=0.481;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:64,85:149:99:2104,0,1644:24,40,37,48
chr1	183072908	.	T	C	352.46	PASS	AC=1;AF=0.667;AN=2;DP=1746;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,34:55:99:945,0,468:7,14,11,23
chr1	183077296	.	A	AG	88.29	PASS	AC=1;AF=0.686;AN=2;DP=467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:151,0,396:9,2,5,0
chr1	183077615	.	C	T	79.68	PASS	AC=1;AF=0.671;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:99:369,0,238:0,3,0,9
chr1	183077618	.	C	T	79.68	PASS	AC=1;AF=0.671;AN=2;DP=392;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:99:369,0,238:0,3,0,9
chr1	183079509	.	C	T	547.58	PASS	AC=1;AF=0.667;AN=2;DP=1061;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:546,0,391:11,1,14,6
chr1	183079853	.	T	C	109.87	PASS	AC=1;AF=0.667;AN=2;DP=825;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:393,0,430:1,11,0,11
chr1	183084607	.	A	G	1654.88	PASS	AC=1;AF=0.667;AN=2;DP=2779;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:2070,0,3074:38,21,32,21
chr1	183084608	.	C	A	1654.88	PASS	AC=1;AF=0.667;AN=2;DP=2802;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,55:114:99:2070,0,3074:38,21,32,23
chr1	183085568	.	C	T	322.67	PASS	AC=1;AF=0.667;AN=2;DP=731;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:358,0,511:13,2,10,3
chr1	183085611	.	C	CA,CAA	418.09	PASS	AC=1,0;AF=0.5,0.086;AN=2;DP=1607;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:50:99:16,10,15,9
chr1	183085696	.	A	G	1498.44	PASS	AC=1;AF=0.667;AN=2;DP=4289;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,64:135:99:1706,0,1713:37,34,36,28
chr1	183085755	.	A	G	1351.87	PASS	AC=1;AF=0.667;AN=2;DP=4697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,75:148:99:1791,0,1784:38,35,39,36
chr1	183086757	.	A	C	2462.35	PASS	AC=1;AF=0.667;AN=2;DP=6734;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,113:196:99:2874,0,2027:39,44,58,55
chr1	183090751	.	A	G	396.63	PASS	AC=1;AF=0.667;AN=2;DP=1213;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:306,0,450:11,5,9,2
chr1	183093875	.	T	C	1414.16	PASS	AC=1;AF=0.667;AN=2;DP=4662;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,89:165:99:2317,0,1789:39,37,40,49
chr1	183094547	.	T	C	379.19	PASS	AC=1;AF=0.667;AN=2;DP=2684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,38:83:99:976,0,1176:28,17,26,12
chr1	183094802	.	G	A	91.65	PASS	AC=1;AF=0.645;AN=2;DP=558;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:281,0,276:5,7,1,8
chr1	183095185	.	TAA	T,TA	530.44	PASS	AC=1,0;AF=0.653,0.014;AN=2;DP=1095;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:40:99:8,6,16,10
chr1	183095234	.	A	G	189.72	PASS	AC=1;AF=0.667;AN=2;DP=1740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:1063,0,747:18,14,20,18
chr1	183095477	.	G	A	235.9	PASS	AC=1;AF=0.667;AN=2;DP=1386;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,21:56:99:473,0,906:12,23,7,14
chr1	183096253	.	T	TATA	313.55	PASS	AC=1;AF=0.657;AN=2;DP=477;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:174,0,460:8,1,4,0
chr1	183096634	.	G	A	291.29	PASS	AC=1;AF=0.667;AN=2;DP=912;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:490,0,805:4,22,2,14
chr1	183096668	.	C	T	136.72	PASS	AC=1;AF=0.682;AN=2;DP=450;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:258,0,502:2,13,0,8
chr1	183097956	.	G	GTTA	681.05	PASS	AC=1;AF=0.667;AN=2;DP=2028;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:1229,0,1196:10,17,11,22
chr1	183098001	.	A	G	220.07	PASS	AC=1;AF=0.667;AN=2;DP=1026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:411,0,421:7,11,5,10
chr1	183099560	.	G	A	950.45	PASS	AC=1;AF=0.5;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant22	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:979,0,1268:28,28,17,25
chr1	183099701	.	G	A	217.76	PASS	AC=1;AF=0.667;AN=2;DP=1298;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:282,0,300:2,8,6,6
chr1	183100307	.	CA	CAAA,CAAAAAA,CAAAA,CAAAAA,C	83.67	PASS	AC=0,0,1,0,0;AF=0.091,0.091,0.273,0.136,0.045;AN=2;DP=208;set=variant-variant2-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant22-variant25-variant26-variant29-variant30-variant35-variant36-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:11:99:6,1,4,0
chr1	183100555	.	T	C	704.78	PASS	AC=1;AF=0.667;AN=2;DP=1744;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,25:65:99:892,0,1621:12,28,6,19
chr1	183100562	.	G	GT	696.62	PASS	AC=1;AF=0.672;AN=2;DP=1440;set=variant-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,10:49:99:284,0,1676:12,27,2,8
chr1	183100563	.	GGT	GTGTGTGTGT,GGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGT,GTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GGTGTGT,G	649.43	PASS	AC=0,1,0,0,0,0,0,0,0,0;AF=0.053,0.197,0.224,0.092,0.092,0.039,0.013,0.026,0.026,0.013;AN=2;DP=1674;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant7-variant10-variant11-variant12-variant13-variant16-variant14-variant18-variant19-variant15-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant17-variant37-variant38-variant20-variant40-variant41-variant23-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:22:99:1,3,5,13
chr1	183100596	.	A	G	271.56	PASS	AC=1;AF=0.671;AN=2;DP=678;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:401,0,796:6,14,1,10
chr1	183100598	.	T	G	271.56	PASS	AC=1;AF=0.662;AN=2;DP=628;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:399,0,880:5,13,1,9
chr1	183101471	.	G	A	361.76	PASS	AC=1;AF=0.677;AN=2;DP=497;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:99,0,153:4,0,3,0
chr1	183101686	.	G	A	750.87	PASS	AC=1;AF=0.667;AN=2;DP=2763;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,57:86:99:1546,0,669:10,19,23,34
chr1	183104013	.	G	A	461.98	PASS	AC=1;AF=0.636;AN=2;DP=1887;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:1159,0,1038:9,26,14,26
chr1	183104340	.	AT	A	557.86	PASS	AC=1;AF=0.667;AN=2;DP=3310;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,40:104:99:781,0,1463:26,38,12,28
chr1	183105324	.	C	T	139.94	PASS	AC=1;AF=0.667;AN=2;DP=571;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:347,0,250:7,1,9,1
chr1	183105399	.	C	G	767.37	PASS	AC=1;AF=0.681;AN=2;DP=2061;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:687,0,776:18,11,19,12
chr1	183105534	.	T	C	1160.08	PASS	AC=1;AF=0.667;AN=2;DP=3980;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,55:139:99:1191,0,2113:41,43,31,24
chr1	183105705	.	G	A	491.02	PASS	AC=1;AF=0.636;AN=2;DP=1321;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:446,0,644:8,15,2,13
chr1	183106739	.	G	A	202.81	PASS	AC=1;AF=0.667;AN=2;DP=893;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:415,0,445:12,3,11,3
chr1	183112041	.	G	C	406.39	PASS	AC=1;AF=0.667;AN=2;DP=1972;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:1190,0,1004:22,13,18,18
chr1	183112412	.	A	G	1559.09	PASS	AC=1;AF=0.667;AN=2;DP=3467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,53:131:99:1462,0,2069:47,31,31,22
chr1	183112505	.	T	C	3125.01	PASS	AC=1;AF=0.667;AN=2;DP=6756;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,111:255:99:2620,0,3788:79,65,63,48
chr1	183112566	.	T	C	3607.03	PASS	AC=1;AF=0.667;AN=2;DP=9338;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,178:359:99:4255,0,4434:98,83,99,79
chr1	183112764	.	A	G	3881.27	PASS	AC=1;AF=0.667;AN=2;DP=9622;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:196,174:370:99:4378,0,4995:90,106,75,99
chr1	183113862	.	C	T	575.08	PASS	AC=1;AF=0.667;AN=2;DP=1707;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:967,0,645:11,18,15,22
chr1	183113952	.	A	G	570.49	PASS	AC=1;AF=0.667;AN=2;DP=1893;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:546,0,673:12,13,9,10
chr1	183114119	.	C	T	766.87	PASS	AC=1;AF=0.667;AN=2;DP=2414;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:880,0,896:20,15,17,18
chr1	183114146	.	T	C	727.08	PASS	AC=1;AF=0.667;AN=2;DP=2435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:921,0,1119:24,16,17,18
chr1	183114634	.	G	A	1868.18	PASS	AC=1;AF=0.667;AN=2;DP=5020;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,76:152:99:2057,0,1987:25,51,25,51
chr1	183114797	.	A	G	130.7	PASS	AC=1;AF=0.724;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:99,0,191:0,5,0,3
chr1	183155228	.	C	A	176.89	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant6-variant11-variant15-variant21-variant24-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:264,0,310:8,1,8,0
chr1	183155399	.	A	G	1326.55	PASS	AC=1;AF=0.5;AN=2;DP=999;FractionInformativeReads=1;set=variant4-variant6-variant11-variant15-variant21-variant24-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1729,0,1602:33,34,37,34
chr1	183155715	.	CT	C	2077.74	PASS	AC=1;AF=0.672;AN=2;DP=3526;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,71:143:99:2674,0,3015:23,49,27,44
chr1	183155717	.	C	A	2086.73	PASS	AC=1;AF=0.672;AN=2;DP=3480;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,71:143:99:2674,0,3015:23,49,27,44
chr1	183155778	.	A	C	377.97	PASS	AC=1;AF=0.672;AN=2;DP=1017;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:576,0,442:2,11,2,14
chr1	183176970	.	GT	G,GTTT,GTT,GTTTT,GTTTTT	229.72	PASS	AC=0,1,0,0,0;AF=0.09,0.231,0.244,0.013,0.026;AN=2;DP=3357;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:86:99:37,19,17,13
chr1	183177218	.	A	G	471.52	PASS	AC=1;AF=0.731;AN=2;DP=1064;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant29-variant31-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:634,0,595:6,15,5,16
chr1	183205523	.	CAAAA	CAA,CAAA,CA,C	115.33	PASS	AC=0,0,1,0;AF=0.333,0.217,0.1,0.017;AN=2;DP=385;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/3:12:99:4,4,4,0
chr1	183218026	.	AGTGTGTGT	AGTGT,AGTGTGT,AGTGTGTGTGTGT,AGTGTGTGTGT,A,AGT	461.76	PASS	AC=0,1,0,0,0,0;AF=0.052,0.414,0.034,0.034,0.034,0.017;AN=2;DP=698;set=variant-variant2-variant4-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant27-variant28-variant29-variant30-filterInvariant31-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:26:99:10,4,10,2
chr1	183218817	.	CGTGTGTGTGTGTGT	CGTGT,CGTGTGTGTGT,C,CGTGTGT,CGTGTGTGTGTGTGTGT,CGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGT	376.05	PASS	AC=0,0,0,0,0,0,2,0;AF=0.054,0.071,0.054,0.071,0.179,0.071,0.125,0.036;AN=2;DP=867;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant29-variant30-filterInvariant32-variant33-filterInvariant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	7/7:11:33:0,0,2,9
chr1	183253213	.	G	A	1200.94	PASS	AC=1;AF=0.633;AN=2;DP=1052;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:670,0,712:7,17,9,14
chr1	183253959	.	T	G	727.26	PASS	AC=1;AF=0.662;AN=2;DP=1041;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:563,0,357:8,8,10,13
chr1	183259603	.	T	G	89.17	PASS	AC=1;AF=0.548;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant12-variant15-variant16-variant20-variant22-variant24-variant25-variant26-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:143,0,73:0,2,0,4
chr1	183261710	.	A	G	149.07	PASS	AC=1;AF=0.647;AN=2;DP=1568;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:511,0,608:13,10,14,4
chr1	183441977	.	C	T	420.19	PASS	AC=2;AF=0.682;AN=2;DP=1048;MQ=60;set=variant2-variant3-variant5-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant21-variant23-variant26-variant28-variant29-variant32-variant33-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2215,202,0:0,0,16,52
chr1	183471295	.	G	T	412.66	PASS	AC=2;AF=0.884;AN=2;DP=560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:406,30,0:0,0,9,1
chr1	183481943	.	CTTT	CTT,CTTTT,CT,C	211.04	PASS	AC=0,0,0,1;AF=0.333,0.13,0.037,0.019;AN=2;DP=1359;set=variant5-variant6-variant7-variant10-filterInvariant11-variant14-filterInvariant15-variant16-variant17-variant19-variant20-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant27-filterInvariant28-variant31-variant33-filterInvariant34-variant35-filterInvariant37-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:55:99:22,23,3,7
chr1	183486859	.	G	A	3569.45	PASS	AC=2;AF=0.872;AN=2;DP=5932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:4765,482,0:0,0,90,71
chr1	183496658	.	A	G	196.45	PASS	AC=2;AF=0.711;AN=2;DP=277;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant11-variant15-variant16-variant17-variant21-variant23-variant26-variant28-variant29-variant32-variant33-variant34-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:919,72,0:0,0,21,3
chr1	183524850	.	A	AGAT	3773.56	PASS	AC=2;AF=0.69;AN=2;DP=5868;MQ=60;set=variant2-variant3-variant5-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant21-variant23-variant26-variant28-variant29-variant32-variant33-variant34-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,301:303:99:13404,821,0:1,1,140,161
chr1	183524855	.	C	A	9375.79	PASS	AC=2;AF=0.884;AN=2;DP=11842;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,312:312:99:13853,942,0:0,0,146,166
chr1	183525452	.	T	G	4670.67	PASS	AC=2;AF=0.884;AN=2;DP=5384;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3981,383,0:0,0,59,69
chr1	183592416	.	G	T	2809.67	PASS	AC=1;AF=0.64;AN=2;DP=6350;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,123:283:99:2899,0,4157:79,81,61,62
chr1	183592570	.	C	T	1801	PASS	AC=1;AF=0.614;AN=2;DP=3414;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant16-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,107:195:99:2539,0,2313:37,51,48,59
chr1	183596136	.	A	G	7743.42	PASS	AC=1;AF=0.714;AN=2;DP=8010;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:197,155:352:99:3617,0,5050:103,94,82,73
chr1	183604905	.	A	G	2834.91	PASS	AC=1;AF=0.714;AN=2;DP=3093;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,56:133:99:1549,0,2121:24,53,14,42
chr1	183616687	.	G	A	5921.6	PASS	AC=1;AF=0.609;AN=2;DP=10791;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:322,285:607:99:6922,0,7974:155,167,134,151
chr1	183616926	.	T	C	1713.93	PASS	AC=1;AF=0.64;AN=2;DP=2686;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,63:123:99:1896,0,1834:17,43,26,37
chr1	183617105	.	A	G	1084.18	PASS	AC=1;AF=0.64;AN=2;DP=2636;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,61:130:99:1535,0,1859:37,32,27,34
chr1	183617266	.	C	G	2372.73	PASS	AC=1;AF=0.643;AN=2;DP=2362;MQ=60;set=variant-variant4-variant8-variant11-variant15-variant16-variant21-variant22-variant24-variant25-variant27-variant35-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:106,91:197:99:2237,0,2677:62,44,47,44
chr1	183711483	.	C	T	2625.17	PASS	AC=1;AF=0.717;AN=2;DP=2357;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:62,40:102:99:1033,0,1585:27,35,15,25
chr1	183775638	.	A	T	2384.88	PASS	AC=1;AF=0.636;AN=2;DP=2113;MQ=60;set=variant-variant3-variant6-variant8-variant10-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant32-variant33-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,51:110:99:1117,0,1296:29,30,20,31
chr1	183775704	.	CT	C	104.97	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0;MQ=60;set=variant15-filterInvariant17	GT:AD:DP:GQ:PL:SB	0/1:32,11:43:99:142,0,722:8,24,3,8
chr1	183817016	.	G	A	30.47	PASS	AC=1;AF=0.538;AN=2;DP=120;MQ=60;set=variant3-variant6-variant15-variant17-variant19-variant20-variant24-variant26-variant27-variant30-variant33-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:121,0,367:1,9,1,4
chr1	183861021	.	C	T	417.5	PASS	AC=1;AF=0.5;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:446,0,566:14,3,11,4
chr1	183881089	.	A	T	706.94	PASS	AC=1;AF=0.5;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:727,0,815:23,8,21,10
chr1	183895435	.	A	C	1244.56	PASS	AC=1;AF=0.5;AN=2;DP=666;MQ=60;set=variant6-variant15-variant21-variant22-variant25-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:61,59:120:99:1697,0,1595:33,28,30,29
chr1	183905132	.	C	CG	410.42	PASS	AC=1;AF=0.5;AN=2;DP=817;MQ=60;set=variant6-variant9-variant12-variant15-variant21-variant22-variant25-variant29-variant30-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:686,0,1015:20,17,13,14
chr1	183906009	.	A	G	1105.37	PASS	AC=1;AF=0.8;AN=2;DP=1829;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:979,0,869:18,15,18,18
chr1	183906614	.	G	A	423.44	PASS	AC=1;AF=0.5;AN=2;DP=427;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant12-variant15-variant21-variant22-variant25-variant29-variant30-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:474,0,670:15,14,10,12
chr1	183907331	.	AT	A	825.96	PASS	AC=1;AF=0.5;AN=2;DP=1358;set=variant6-variant9-variant12-variant15-variant21-variant22-variant25-variant30-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1311,0,1195:34,27,30,31
chr1	183907415	.	G	GTGAT	4533.02	PASS	AC=1;AF=0.5;AN=2;DP=2991;MQ=60;set=variant6-variant9-variant12-variant15-variant21-variant22-variant25-variant29-variant30-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:133,129:262:99:5134,0,5159:76,57,75,54
chr1	183907670	.	A	G	8872.21	PASS	AC=1;AF=0.813;AN=2;DP=10479;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,160:321:99:3778,0,3995:85,76,80,80
chr1	183908222	.	C	T	956.98	PASS	AC=1;AF=0.5;AN=2;DP=965;MQ=60;set=variant6-variant9-variant12-variant15-variant21-variant22-variant25-variant29-variant30-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:37,40:77:99:1020,0,936:17,20,15,25
chr1	183909717	.	G	A	1549.87	PASS	AC=1;AF=0.5;AN=2;DP=1757;MQ=60;set=variant6-variant9-variant12-variant15-variant21-variant22-variant25-variant29-variant30-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:86,91:177:99:2334,0,2083:52,34,57,34
chr1	183909934	.	G	A	1383.7	PASS	AC=1;AF=0.5;AN=2;DP=1239;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant12-variant15-variant21-variant22-variant25-variant29-variant30-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:49,56:105:99:1509,0,1225:17,32,17,39
chr1	183942950	.	C	T	277.98	PASS	AC=1;AF=0.784;AN=2;DP=460;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:142,0,414:6,10,1,5
chr1	183944089	.	A	C	417.67	PASS	AC=1;AF=0.792;AN=2;DP=423;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:153,0,160:4,1,4,0
chr1	183944444	.	C	T	454.1	PASS	AC=1;AF=0.792;AN=2;DP=467;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:503,0,209:1,6,3,13
chr1	183947757	.	G	GA	339.45	PASS	AC=1;AF=0.806;AN=2;DP=519;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:186,0,165:1,6,2,6
chr1	184006888	.	AGTGTGT	AGTGTGTGTGTGT,AGTGTGTGT,AGT,AGTGT,AGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGT,AGTGTGTGTGT,AGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGAGTGTGTGT,A,AGTGTGTGTGTGTGTGTGTGTGTGTGTGT	704.4	PASS	AC=0,0,0,0,0,0,0,1,1,0,0,0;AF=0.074,0.147,0.059,0.029,0.029,0.059,0.074,0.059,0.029,0.029,0.029,0.015;AN=2;DP=2351;set=variant-variant2-variant3-variant5-variant6-variant7-filterInvariant10-variant11-variant12-variant13-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	9/8:24:99:0,1,4,19
chr1	184476621	.	T	C	178.51	PASS	AC=1;AF=0.68;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:13:247,0,13:1,0,6,1
chr1	184596584	.	C	A	737.31	PASS	AC=1;AF=0.63;AN=2;DP=1378;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant30-variant31-variant33-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:592,0,698:16,8,15,6
chr1	184596806	.	C	G	797.92	PASS	AC=1;AF=0.5;AN=2;DP=1220;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant12-variant15-variant16-variant17-variant19-variant23-variant24-variant26-variant27-variant29-variant31-variant33-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,25:72:99:569,0,1269:18,29,9,16
chr1	184597065	.	A	G	646.02	PASS	AC=1;AF=0.583;AN=2;DP=843;MQ=60;set=variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant25-variant30-variant35-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:37,16:53:99:355,0,1001:18,19,7,9
chr1	184597866	.	T	C	1078.54	PASS	AC=1;AF=0.522;AN=2;DP=1466;MQ=60;set=variant4-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant33-variant34-variant35-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:825,0,881:20,15,18,19
chr1	184597999	.	T	C	1829.72	PASS	AC=1;AF=0.522;AN=2;DP=2517;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant33-variant34-variant35-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:72,64:136:99:1425,0,1644:37,35,32,32
chr1	184659318	.	T	A	280.94	PASS	AC=1;AF=0.647;AN=2;DP=1590;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,54:83:99:1434,0,765:20,9,35,19
chr1	184659545	.	T	TA	413.56	PASS	AC=1;AF=0.647;AN=2;DP=3003;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,51:112:99:1092,0,1385:25,36,19,32
chr1	184660110	.	TA	T	4901.27	PASS	AC=1;AF=0.633;AN=2;DP=11548;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:205,195:400:99:5029,0,5291:79,126,80,115
chr1	184660205	.	T	A	2209.24	PASS	AC=1;AF=0.647;AN=2;DP=4640;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,74:140:99:2095,0,2115:16,50,24,50
chr1	184660742	.	A	G	2650.29	PASS	AC=1;AF=0.5;AN=2;DP=202;FS=0;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.181;QD=13.12;ReadPosRankSum=-0.646;SOR=0.734;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:100,100:200:99:2679,0,2715:58,42,59,41
chr1	184661642	.	G	A	5153.75	PASS	AC=1;AF=0.676;AN=2;DP=16672;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:343,306:649:99:7352,0,8463:160,183,142,164
chr1	184661932	.	A	AG	706.56	PASS	AC=1;AF=0.587;AN=2;DP=2800;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant34-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,51:127:99:743,0,1483:40,36,32,19
chr1	184662181	.	C	T	3470.02	PASS	AC=1;AF=0.633;AN=2;DP=8593;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:186,165:351:99:4197,0,4691:91,95,75,90
chr1	184663537	.	A	C	1181.61	PASS	AC=1;AF=0.596;AN=2;DP=2173;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,42:96:99:1007,0,1364:21,33,17,25
chr1	184663581	.	T	C	857.9	PASS	AC=1;AF=0.638;AN=2;DP=1755;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,25:71:99:585,0,1185:18,28,7,18
chr1	184663643	.	TA	T	223.13	PASS	AC=1;AF=0.638;AN=2;DP=715;MQ=60;set=variant2-variant4-variant7-filterInvariant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:199,0,478:4,14,1,8
chr1	184675814	.	G	A	1199.09	PASS	AC=1;AF=0.577;AN=2;DP=4353;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,86:201:99:1769,0,2791:59,56,43,43
chr1	184677464	.	G	A	941.87	PASS	AC=1;AF=0.676;AN=2;DP=3085;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,60:121:99:1571,0,1583:23,38,24,36
chr1	184681081	.	A	G	76.45	PASS	AC=1;AF=0.691;AN=2;DP=441;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:360,0,248:0,7,2,9
chr1	184692999	.	TAA	TAAA,TA,TAAAA,T	90.47	PASS	AC=1,0,0,0;AF=0.391,0.094,0.047,0.016;AN=2;DP=1132;set=variant2-variant3-variant4-variant5-variant6-filterInvariant9-variant10-variant11-variant13-variant14-variant15-variant16-filterInvariant19-variant22-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-variant31-filterInvariant32-variant34-variant35-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:27:99:4,8,6,9
chr1	184695571	.	C	T	477.41	PASS	AC=1;AF=0.676;AN=2;DP=902;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:575,0,650:3,18,6,15
chr1	184706212	.	GT	G	670.49	PASS	AC=1;AF=0.676;AN=2;DP=2966;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,46:94:99:1432,0,1497:19,29,17,29
chr1	184718750	.	GAAAAA	GAAAA,GAA,GAAAAAA,G,GAAA	34.92	PASS	AC=0,1,0,0,0;AF=0.092,0.461,0.013,0.013,0.013;AN=2;DP=1195;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-filterInvariant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:29:99:4,8,5,12
chr1	184760001	.	T	C	2893.78	PASS	AC=1;AF=0.671;AN=2;DP=7454;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,121:231:99:3124,0,2613:47,63,53,68
chr1	184760433	.	C	T	3336.63	PASS	AC=1;AF=0.671;AN=2;DP=9524;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,156:337:99:3713,0,4518:104,77,83,73
chr1	184760624	.	CTT	CT,C,CTTT	429.46	PASS	AC=1,0,0;AF=0.511,0.068,0.023;AN=2;DP=10111;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:227:99:38,47,70,72
chr1	184761093	.	CTT	CT,C	1348.28	PASS	AC=1,1;AF=0.295,0.557;AN=2;DP=6722;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:124:99:1,1,37,85
chr1	184761365	.	A	G	87.23	PASS	AC=1;AF=0.688;AN=2;DP=405;FractionInformativeReads=1;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:64:64,0,286:6,1,2,1
chr1	184763525	.	A	G	1301.44	PASS	AC=1;AF=0.671;AN=2;DP=2213;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:536,0,730:12,18,7,11
chr1	184763596	.	C	T	1610.69	PASS	AC=1;AF=0.588;AN=2;DP=2564;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,16:56:99:423,0,1075:25,15,11,5
chr1	184764067	.	C	G	1366.95	PASS	AC=1;AF=0.588;AN=2;DP=4193;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,78:138:99:2235,0,1681:31,29,41,37
chr1	184774989	.	C	T	743.51	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0.95;FractionInformativeReads=0.985;MQ=60;MQRankSum=1.37;QD=11.44;ReadPosRankSum=1.088;SOR=0.56;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:772,0,772:19,12,19,14
chr1	184777079	.	G	A	766.68	PASS	AC=1;AF=0.525;AN=2;DP=768;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant23-variant26-variant28-variant29-variant31-variant33-variant34-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:251,0,799:19,3,7,3
chr1	184777101	.	G	A	881.37	PASS	AC=1;AF=0.525;AN=2;DP=1238;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant23-variant26-variant28-variant29-variant31-variant33-variant34-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,22:67:99:680,0,1358:34,11,19,3
chr1	184777177	.	C	A	1837.14	PASS	AC=1;AF=0.531;AN=2;DP=2653;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant15-variant16-variant17-variant23-variant26-variant29-variant31-variant33-variant34-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,95:197:99:2267,0,2434:58,44,56,39
chr1	184777467	.	A	T	201.67	PASS	AC=1;AF=0.542;AN=2;DP=659;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:484,0,537:4,13,5,13
chr1	185014506	.	T	TC	351.24	PASS	AC=2;AF=1;AN=2;DP=1055;FS=0;MQ=60;MQRankSum=1.639;ReadPosRankSum=-0.421;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:96:1048,96,0:0,0,21,9
chr1	185108460	.	T	C	1080.67	PASS	AC=1;AF=0.5;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant20-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,48:79:99:1283,0,733:21,10,30,18
chr1	185119614	.	C	T	658.85	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:687,0,800:20,17,16,14
chr1	185119794	.	C	T	408.52	PASS	AC=2;AF=1;AN=2;DP=565;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:860,72,0:0,0,6,18
chr1	185833565	.	A	C	278.15	PASS	AC=1;AF=0.641;AN=2;DP=943;MQ=60;set=variant-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:491,0,490:12,5,13,4
chr1	185833880	.	A	G	699.47	PASS	AC=1;AF=0.619;AN=2;DP=1477;MQ=60;set=variant5-variant9-variant13-variant15-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,44:82:99:1349,0,990:10,28,9,35
chr1	185834847	.	GTTTC	G	905.52	PASS	AC=1;AF=0.579;AN=2;DP=814;MQ=60;set=variant5-variant9-variant13-variant15-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,35:51:99:1226,0,851:11,5,22,13
chr1	185984517	.	T	C	2246.23	PASS	AC=1;AF=0.581;AN=2;DP=3962;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,81:135:99:2164,0,1347:19,35,29,52
chr1	185988567	.	CT	C	320.82	PASS	AC=1;AF=0.731;AN=2;DP=243;MQ=60;set=variant2-variant6-variant9-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:178,0,154:6,2,7,1
chr1	186022032	.	T	G	365.74	PASS	AC=1;AF=0.679;AN=2;DP=862;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:450,0,463:12,2,11,4
chr1	186026474	.	T	C	1787.88	PASS	AC=1;AF=0.645;AN=2;DP=5173;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,69:161:99:1575,0,2209:45,47,35,34
chr1	186030902	.	G	T	62.08	PASS	AC=1;AF=0.667;AN=2;DP=968;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:684,0,424:12,2,18,2
chr1	186031041	.	C	T	752.68	PASS	AC=1;AF=0.679;AN=2;DP=4450;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,61:142:99:1497,0,1870:43,38,26,35
chr1	186039006	.	C	T	367.2	PASS	AC=1;AF=0.653;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:607,0,271:0,8,0,16
chr1	186050417	.	A	G	1033.75	PASS	AC=1;AF=0.657;AN=2;DP=2855;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,56:99:99:1354,0,1087:25,18,28,28
chr1	186055371	.	A	G	1560.4	PASS	AC=1;AF=0.671;AN=2;DP=2562;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,55:85:99:1434,0,680:18,12,32,23
chr1	186057181	.	T	C	2306.83	PASS	AC=1;AF=0.671;AN=2;DP=5063;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,85:185:99:2173,0,2679:46,54,31,54
chr1	186064760	.	A	T	73.72	PASS	AC=1;AF=0.707;AN=2;DP=364;MQ=60;set=variant-variant5-variant6-filterInvariant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:166,0,175:0,5,1,6
chr1	186077463	.	A	G	334.78	PASS	AC=1;AF=0.657;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:538,0,471:13,0,14,1
chr1	186081918	.	C	T	1095	PASS	AC=1;AF=0.671;AN=2;DP=3685;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,53:113:99:1359,0,1525:32,28,35,18
chr1	186086578	.	G	A	1232.46	PASS	AC=1;AF=0.657;AN=2;DP=4250;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,82:149:99:1874,0,1690:44,23,51,31
chr1	186113852	.	G	C	1813.13	PASS	AC=1;AF=0.533;AN=2;DP=2285;MQ=60;set=variant5-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant25-variant28-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,88:163:99:2365,0,1832:32,43,36,52
chr1	186115161	.	GA	GAA,G	260.27	PASS	AC=1,0;AF=0.476,0.048;AN=2;DP=827;MQ=60;set=variant5-filterInvariant7-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant25-filterInvariant28-variant29-filterInvariant32-filterInvariant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:35:99:6,10,8,11
chr1	186120982	.	G	A	124.39	PASS	AC=1;AF=0.563;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant14-variant15-variant19-variant21-variant25-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:195,0,147:1,4,1,6
chr1	186135231	.	A	C	674.87	PASS	AC=1;AF=0.536;AN=2;DP=490;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant15-variant16-variant19-variant21-variant25-variant29-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:1062,0,1481:18,6,20,7
chr1	186135236	.	G	A	693.47	PASS	AC=1;AF=0.574;AN=2;DP=1021;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:1058,0,1525:18,6,20,7
chr1	186141301	.	G	A	1289.6	PASS	AC=1;AF=0.647;AN=2;DP=5075;set=variant-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,82:181:99:2109,0,2626:34,65,29,53
chr1	186151493	.	C	G	1101.03	PASS	AC=1;AF=0.558;AN=2;DP=1679;MQ=60;set=variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:991,0,868:11,23,13,25
chr1	186159835	.	A	G	3507.39	PASS	AC=2;AF=0.989;AN=2;DP=4769;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,129:130:99:4045,348,0:1,0,41,88
chr1	186270894	.	A	G	1410.5	PASS	AC=2;AF=0.6;AN=2;DP=1996;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,81:83:99:2285,199,0:1,1,30,51
chr1	186273994	.	C	T	2232.89	PASS	AC=2;AF=0.6;AN=2;DP=2245;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:2890,304,0:0,0,43,59
chr1	186277088	.	G	C	7257.11	PASS	AC=2;AF=1;AN=2;DP=22715;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,580:580:99:17180,1735,0:0,0,281,299
chr1	186277989	.	A	G	2100.25	PASS	AC=2;AF=0.6;AN=2;DP=2996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,150:152:99:4766,407,0:1,1,79,71
chr1	186283422	.	C	T	4594.58	PASS	AC=2;AF=0.6;AN=2;DP=3483;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5127,484,0:0,0,57,105
chr1	186305914	.	A	C	618.73	PASS	AC=2;AF=0.604;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:750,51,0:0,0,2,15
chr1	186313249	.	A	G	1097.06	PASS	AC=2;AF=0.977;AN=2;DP=1594;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1547,141,0:0,0,16,31
chr1	186316656	.	G	C	1421.93	PASS	AC=2;AF=0.6;AN=2;DP=824;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1572,120,0:0,0,5,35
chr1	186321242	.	C	T	2491.38	PASS	AC=2;AF=0.571;AN=2;DP=939;MQ=60;set=variant-variant2-variant3-variant4-variant10-variant13-variant14-variant15-variant17-variant24-variant25-variant27-variant33-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2230,224,0:0,0,26,49
chr1	186329869	.	C	G	3129.35	PASS	AC=2;AF=0.686;AN=2;DP=3157;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3708,375,0:0,0,73,52
chr1	186330643	.	T	C	587.79	PASS	AC=2;AF=0.691;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:577,45,0:0,0,14,1
chr1	186344848	.	G	T	1156.32	PASS	AC=1;AF=0.5;AN=2;DP=147;MQ=60;set=variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1185,0,1386:19,25,22,20
chr1	186345125	.	AGTGT	AGTGTGTGTGTGT,AGTGTGTGTGTGTGTGT,AGTGTGTGT,AGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGTGT,A	316.69	PASS	AC=2,0,0,0,0,0,0;AF=0.27,0.014,0.068,0.284,0.014,0.149,0.014;AN=2;DP=763;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	1/1:8:24:0,0,1,7
chr1	186352347	.	A	T	672.58	PASS	AC=2;AF=0.6;AN=2;DP=628;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,29:30:46:1120,46,0:1,0,3,26
chr1	186357523	.	T	C	929.35	PASS	AC=2;AF=0.966;AN=2;DP=1142;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1185,99,0:0,0,26,7
chr1	186358588	.	A	G	407.08	PASS	AC=2;AF=0.591;AN=2;DP=164;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant26-variant27-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:430,30,0:0,0,10,0
chr1	186363119	.	C	G	1858.44	PASS	AC=2;AF=0.6;AN=2;DP=1321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2250,225,0:0,0,34,41
chr1	186368338	.	AT	A,ATT	32.69	PASS	AC=1,0;AF=0.439,0.061;AN=2;DP=2230;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant33-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:49:99:10,22,5,12
chr1	186370598	.	T	TTCTG	945.06	PASS	AC=2;AF=0.671;AN=2;DP=1255;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1968,135,0:0,0,14,30
chr1	186370630	.	TTCTC	T	254.05	PASS	AC=1;AF=0.5;AN=2;DP=66;MQ=60;set=variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:291,0,561:6,9,1,7
chr1	186390303	.	A	C	10458.4	PASS	AC=2;AF=0.686;AN=2;DP=10957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,349:349:99:10904,1044,0:0,0,159,190
chr1	186417946	.	T	G	1747.93	PASS	AC=1;AF=0.5;AN=2;DP=557;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:69,82:151:99:2280,0,1656:25,44,24,58
chr1	186641626	.	G	A	3774.78	PASS	AC=2;AF=1;AN=2;DP=5071;FS=0;MQ=60;MQRankSum=1.272;ReadPosRankSum=1.028;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4379,435,0:0,0,69,76
chr1	186642429	.	A	G	2852.11	PASS	AC=2;AF=0.932;AN=2;DP=10479;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8822,845,0:0,0,126,156
chr1	186643275	.	A	C	2561.37	PASS	AC=1;AF=0.5;AN=2;DP=221;FS=3.009;FractionInformativeReads=1;MQ=60;MQRankSum=-1.888;QD=11.59;ReadPosRankSum=-0.925;SOR=0.516;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:111,110:221:99:2590,0,2704:47,64,52,58
chr1	186648197	.	C	G	451.9	PASS	AC=2;AF=0.577;AN=2;DP=489;MQ=60;set=variant2-variant3-variant4-variant10-variant14-variant15-variant17-variant24-variant27-variant33-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1614,137,0:0,0,37,9
chr1	186649221	.	A	G	748.73	PASS	AC=2;AF=0.814;AN=2;DP=2418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2356,236,0:0,0,42,37
chr1	186839861	.	G	A	2284.45	PASS	AC=1;AF=0.688;AN=2;DP=1673;set=variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,39:85:99:885,0,1756:20,26,17,22
chr1	186839879	.	AAG	A	940.16	PASS	AC=1;AF=0.625;AN=2;DP=502;set=variant6-variant15-variant17-variant19-variant22-variant24-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,42:78:99:1652,0,1366:14,22,18,24
chr1	186862419	.	A	G	1176.76	PASS	AC=1;AF=0.563;AN=2;DP=512;MQ=60;set=variant8-variant11-variant12-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant34-variant35-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,34:48:99:1069,0,392:2,12,6,28
chr1	186863385	.	TAA	T	616.44	PASS	AC=1;AF=0.63;AN=2;DP=970;MQ=60;set=variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:723,0,1049:7,18,3,16
chr1	186901738	.	TTCTTCTTTTAAAA	T	520.96	PASS	AC=1;AF=0.717;AN=2;DP=623;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:548,0,2608:13,5,13,2
chr1	186919732	.	A	T	359.28	PASS	AC=2;AF=0.965;AN=2;DP=847;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:804,66,0:0,0,18,4
chr1	186919993	.	G	A	1714.03	PASS	AC=2;AF=0.965;AN=2;DP=2106;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2392,201,0:0,0,14,53
chr1	186925168	.	A	G	151.77	PASS	AC=2;AF=0.965;AN=2;DP=514;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:541,39,0:0,0,12,1
chr1	186925194	.	T	C	373.54	PASS	AC=2;AF=0.965;AN=2;DP=795;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:873,66,0:0,0,19,3
chr1	186925552	.	T	C	1147.33	PASS	AC=2;AF=0.965;AN=2;DP=1538;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1398,117,0:0,0,8,31
chr1	186946912	.	G	A	2238.28	PASS	AC=2;AF=0.977;AN=2;DP=3474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2606,254,0:0,0,33,52
chr1	187610538	.	C	G	954.36	PASS	AC=2;AF=0.833;AN=2;DP=3902;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3202,291,0:0,0,44,53
chr1	187610698	.	C	A	3224.98	PASS	AC=2;AF=0.717;AN=2;DP=4150;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant34-variant35-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,195:197:99:5689,539,0:1,1,97,98
chr1	187610777	.	C	G	1459.08	PASS	AC=2;AF=0.659;AN=2;DP=3133;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant26-variant31-variant34-variant35-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,170:171:99:5412,466,0:0,1,78,92
chr1	187610852	.	A	T,C	538.32	PASS	AC=0,2;AF=0.321,0.512;AN=2;DP=5016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:131:99:0,0,54,77
chr1	190066742	.	G	A	1137.36	PASS	AC=1;AF=0.677;AN=2;DP=2218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,31:71:99:899,0,1053:27,13,24,7
chr1	190234239	.	T	A	219.93	PASS	AC=1;AF=0.5;AN=2;DP=481;MQ=60;set=variant5-variant7-variant10-variant14-variant15-variant18-variant26-variant30-variant35-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,22:32:99:556,0,273:2,8,8,14
chr1	190446806	.	G	C	119.43	PASS	AC=2;AF=0.625;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant12-variant14-variant15-variant17-variant23-variant32-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:540,42,0:0,0,2,12
chr1	190760498	.	T	C	369.74	PASS	AC=1;AF=0.656;AN=2;DP=1454;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:480,0,584:14,6,13,6
chr1	190760788	.	C	T	177.17	PASS	AC=1;AF=0.55;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant13-variant15-variant18-variant19-variant23-variant28-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:345,0,141:1,4,0,9
chr1	190769033	.	T	C	267.8	PASS	AC=1;AF=0.5;AN=2;DP=350;MQ=60;set=variant-variant13-variant15-variant19-variant23-variant28-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:463,0,542:10,12,8,12
chr1	192127637	.	T	G	5764.38	PASS	AC=1;AF=0.66;AN=2;DP=4163;MQ=60;set=variant-variant3-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:84,90:174:99:2248,0,2065:39,45,46,44
chr1	192128183	.	G	A	589.89	PASS	AC=2;AF=0.756;AN=2;DP=788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:515,45,0:0,0,10,5
chr1	192129370	.	G	A	332.99	PASS	AC=2;AF=0.771;AN=2;DP=352;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:353,33,0:0,0,7,4
chr1	192335271	.	C	CTAAT	1879.74	PASS	AC=2;AF=0.667;AN=2;DP=3349;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:6665,450,0:0,0,97,50
chr1	192335792	.	A	G	3901.61	PASS	AC=2;AF=0.667;AN=2;DP=11521;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,420:420:99:12485,1257,0:0,0,219,201
chr1	192336359	.	T	TAGACAAAATTTTGTCTTCC	910.31	PASS	AC=2;AF=0.63;AN=2;DP=2554;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:3341,228,0:0,0,19,56
chr1	192544754	.	C	CT	202.04	PASS	AC=2;AF=0.762;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,18:20:4:424,4,0:2,0,12,6
chr1	192544795	.	A	G	595.17	PASS	AC=2;AF=0.872;AN=2;DP=1381;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1095,93,0:0,0,20,11
chr1	192545099	.	G	A	1405.93	PASS	AC=2;AF=0.845;AN=2;DP=1218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1139,93,0:0,0,8,23
chr1	192605325	.	C	T	4213.87	PASS	AC=2;AF=0.71;AN=2;DP=8999;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,353:353:99:10345,1057,0:0,0,188,165
chr1	192778159	.	A	T	957.95	PASS	AC=1;AF=0.5;AN=2;DP=1172;MQ=60;set=variant7-variant8-variant9-variant14-variant15-variant18-variant20-variant26-variant27-variant28-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:53,58:111:99:1431,0,1464:35,18,36,22
chr1	192779227	.	T	A	275.3	PASS	AC=1;AF=0.647;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant29-variant33-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:148,0,147:4,0,3,1
chr1	192780088	.	GCT	G	6791.32	PASS	AC=1;AF=0.625;AN=2;DP=2275;set=variant3-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,48:126:99:1649,0,2977:39,39,29,19
chr1	192780337	.	CAA	C	862.91	PASS	AC=1;AF=0.632;AN=2;DP=214;MQ=60;set=variant3-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant33-variant34-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,215:1,4,0,2
chr1	192780498	.	A	G	356.39	PASS	AC=1;AF=0.5;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant14-variant15-variant18-variant20-variant26-variant27-variant28-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:324,0,446:13,2,9,2
chr1	192781172	.	C	G	18104	PASS	AC=1;AF=0.625;AN=2;DP=9977;MQ=60;set=variant3-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:300,344:644:99:8327,0,7228:145,155,168,176
chr1	192989594	.	G	A	2216.89	PASS	AC=1;AF=0.5;AN=2;DP=706;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant26-variant32	GT:AD:DP:GQ:PL:SB	0/1:75,88:163:99:2245,0,1963:24,51,33,55
chr1	193021022	.	T	A	546.22	PASS	AC=1;AF=0.5;AN=2;DP=199;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant26-variant32	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:574,0,424:7,10,7,15
chr1	193044834	.	G	T	39.19	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant15-variant16-variant20-variant25-variant28	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:95:156,0,95:3,0,4,0
chr1	193051685	.	G	A	1717.5	PASS	AC=2;AF=0.845;AN=2;DP=1640;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1484,135,0:0,0,32,13
chr1	193054485	.	T	C	4661.28	PASS	AC=1;AF=0.833;AN=2;DP=18220;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:292,254:546:99:6137,0,6787:167,125,150,104
chr1	193054769	.	T	C	1876.37	PASS	AC=1;AF=0.5;AN=2;DP=451;MQ=60;set=variant15-variant21-variant26-variant32	GT:AD:DP:GQ:PL:SB	0/1:59,62:121:99:1905,0,1695:14,45,14,48
chr1	193057207	.	A	G	1201.6	PASS	AC=2;AF=0.845;AN=2;DP=1264;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1647,132,0:0,0,6,38
chr1	193057513	.	A	AT	2843.65	PASS	AC=2;AF=0.854;AN=2;DP=3661;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,102:104:99:2790,256,0:1,1,53,49
chr1	193057971	.	T	A	5895.83	PASS	AC=2;AF=0.845;AN=2;DP=5254;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5804,495,0:0,0,91,74
chr1	193058840	.	C	T	1951.06	PASS	AC=1;AF=0.5;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:85,80:165:99:1979,0,2114:34,51,29,51
chr1	193074371	.	A	G	133.63	PASS	AC=2;AF=0.849;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:231,21,0:0,0,5,2
chr1	193074651	.	T	A	869.91	PASS	AC=2;AF=0.849;AN=2;DP=3542;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2619,261,0:0,0,48,40
chr1	193075108	.	C	T	4928.55	PASS	AC=2;AF=0.849;AN=2;DP=11510;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,313:314:99:13390,953,0:1,0,157,156
chr1	193075118	.	C	CAA	5062.45	PASS	AC=2;AF=0.849;AN=2;DP=12028;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,318:318:99:13273,1002,0:0,0,150,168
chr1	193090865	.	C	A	1985.36	PASS	AC=1;AF=0.81;AN=2;DP=9701;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,152:289:99:3734,0,3232:73,64,76,76
chr1	193094375	.	T	C	463.8	PASS	AC=1;AF=0.81;AN=2;DP=1798;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:632,0,920:17,23,9,18
chr1	193104827	.	G	A	46.49	PASS	AC=1;AF=0.843;AN=2;DP=209;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,79:0,2,0,2
chr1	193107187	.	A	G	1000.13	PASS	AC=1;AF=0.5;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:38,46:84:99:1028,0,927:25,13,27,19
chr1	193111228	.	TGA	T	164.7	PASS	AC=1;AF=0.5;AN=2;DP=478;MQ=60;set=filterInvariant4-variant12-filterInvariant15-filterInvariant23-variant25-filterInvariant31-filterInvariant39	GT:AD:DP:GQ:PL:SB	0/1:50,8:58:78:78,0,1598:11,39,2,6
chr1	193119670	.	A	G	729.38	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:12,25:37:99:758,0,308:4,8,9,16
chr1	193148537	.	T	C	4089.38	PASS	AC=1;AF=0.5;AN=2;DP=1215;MQ=60;set=variant15-variant21-variant26-variant32	GT:AD:DP:GQ:PL:SB	0/1:165,160:325:99:4118,0,4234:84,81,84,76
chr1	193150219	.	A	G	1898.21	PASS	AC=1;AF=0.5;AN=2;DP=522;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant26-variant32	GT:AD:DP:GQ:PL:SB	0/1:63,76:139:99:1926,0,1547:33,30,32,44
chr1	193150873	.	T	C	3353.89	PASS	AC=1;AF=0.5;AN=2;DP=979;MQ=60;set=variant15-variant21-variant26-variant32	GT:AD:DP:GQ:PL:SB	0/1:118,131:249:99:3382,0,2688:52,66,51,80
chr1	193155444	.	C	A	511.82	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=2.444;FractionInformativeReads=1;MQ=60;MQRankSum=-2.087;QD=11.13;ReadPosRankSum=-2.241;SOR=1.071;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:540,0,578:11,12,9,14
chr1	193202001	.	C	G	82.72	PASS	AC=1;AF=0.861;AN=2;DP=275;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:153,0,195:2,3,4,0
chr1	193202299	.	A	C	146.04	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.636;QD=5.22;ReadPosRankSum=0.381;SOR=0.782;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:174,0,601:6,14,2,6
chr1	193205272	.	T	A	1177.54	PASS	AC=1;AF=0.821;AN=2;DP=3136;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:998,0,1051:26,15,26,11
chr1	196197274	.	C	G	1659.95	PASS	AC=1;AF=0.6;AN=2;DP=874;MQ=60;set=variant13-variant14-variant15-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:133,110:243:99:2507,0,3228:74,59,61,49
chr1	196227526	.	A	G	3027.56	PASS	AC=2;AF=1;AN=2;DP=3780;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3009,285,0:0,0,39,56
chr1	196242764	.	T	G	923.19	PASS	AC=1;AF=0.942;AN=2;DP=1794;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:637,0,473:5,13,6,17
chr1	196254970	.	C	T	606.9	PASS	AC=2;AF=1;AN=2;DP=1089;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:994,75,0:0,0,3,22
chr1	196303319	.	G	A	49.76	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant15-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:72:72,0,80:1,2,0,2
chr1	196342444	.	A	G	382.75	PASS	AC=1;AF=0.5;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant10-variant15-variant22-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:446,0,388:2,11,5,11
chr1	196398619	.	T	C	299.27	PASS	AC=1;AF=0.662;AN=2;DP=1031;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:825,0,509:14,0,22,2
chr1	196398974	.	T	A	146.83	PASS	AC=1;AF=0.662;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:379,0,399:1,11,2,11
chr1	196461513	.	C	T	607.53	PASS	AC=2;AF=0.989;AN=2;DP=654;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:687,48,0:0,0,0,16
chr1	196654324	.	A	C	2151.96	PASS	AC=1;AF=0.709;AN=2;DP=9927;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,142:301:99:3316,0,3690:84,75,65,77
chr1	196658497	.	G	T	62.35	PASS	AC=1;AF=0.705;AN=2;DP=517;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:198,0,618:10,10,6,4
chr1	196658905	.	G	A	280.9	PASS	AC=1;AF=0.731;AN=2;DP=429;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:184,0,285:1,8,1,5
chr1	196659237	.	C	T	527.58	PASS	AC=1;AF=0.709;AN=2;DP=3046;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:1073,0,883:23,10,27,13
chr1	196670757	.	C	T	125.25	PASS	AC=1;AF=0.725;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:71:71,0,122:1,3,1,2
chr1	196682947	.	G	A	500.71	PASS	AC=1;AF=0.632;AN=2;DP=2715;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,39:94:99:839,0,1337:33,22,23,16
chr1	196684574	.	C	T	77.46	PASS	AC=1;AF=0.556;AN=2;DP=148;FS=0;MQ=60;set=variant2-variant3-variant11-variant15-variant17-variant18-variant21-variant25-variant28-variant30-variant31-variant33-variant35-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:229,0,319:4,1,4,1
chr1	196684575	.	A	G	77.46	PASS	AC=1;AF=0.556;AN=2;DP=154;FS=0;MQ=60;set=variant2-variant3-variant11-variant15-variant17-variant18-variant21-variant25-variant28-variant30-variant31-variant33-variant35-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:229,0,319:4,1,5,1
chr1	196684625	.	G	T	395.07	PASS	AC=1;AF=0.707;AN=2;DP=1025;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:647,0,376:11,3,16,4
chr1	196710916	.	T	C	185.91	PASS	AC=1;AF=0.548;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant11-variant15-variant17-variant18-variant21-variant22-variant25-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:460,0,556:14,0,13,0
chr1	196874356	.	G	T	2988.99	PASS	AC=2;AF=1;AN=2;DP=4392;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3795,378,0:0,0,74,52
chr1	196887181	.	T	G	232.5	PASS	AC=2;AF=0.676;AN=2;DP=116;FS=0;FractionInformativeReads=1;set=variant3-variant5-variant6-variant8-variant9-variant13-variant15-variant21-variant25-variant31-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:160,12,0:0,0,4,0
chr1	196887274	.	G	A	1028.51	PASS	AC=1;AF=0.618;AN=2;DP=842;FractionInformativeReads=1;set=variant-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:960,0,657:17,7,25,7
chr1	196920178	.	C	T	888.92	PASS	AC=2;AF=0.607;AN=2;DP=1962;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3192,337,0:0,0,46,67
chr1	196926973	.	C	A	418.2	PASS	AC=2;AF=0.607;AN=2;DP=531;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:1275,92,0:0,0,30,1
chr1	196946869	.	T	A	3982	PASS	AC=1;AF=0.575;AN=2;DP=7009;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant24-variant26-variant27-variant30-variant32-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:212,185:397:99:4515,0,5549:68,144,63,122
chr1	196951912	.	T	C	244.3	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=2.764;FractionInformativeReads=1;MQ=60;MQRankSum=0.583;QD=9.4;ReadPosRankSum=0.083;SOR=1.802;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:273,0,571:15,3,8,0
chr1	196952268	.	C	T	1005.29	PASS	AC=1;AF=0.575;AN=2;DP=2489;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant24-variant26-variant27-variant30-variant32-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:77,47:124:99:1057,0,2083:38,39,21,26
chr1	196978615	.	T	G	3088.78	PASS	AC=1;AF=0.561;AN=2;DP=7560;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,141:285:99:3595,0,3599:65,79,54,87
chr1	197008365	.	C	T	500.22	PASS	AC=1;AF=0.685;AN=2;DP=1384;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:37,26:63:99:603,0,954:22,15,16,10
chr1	197008597	.	A	C	1046.95	PASS	AC=1;AF=0.621;AN=2;DP=2937;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,78:130:99:1934,0,1207:25,27,32,46
chr1	197009798	.	A	G	865.92	PASS	AC=1;AF=0.621;AN=2;DP=2190;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,63:102:99:1622,0,967:19,20,29,34
chr1	197026672	.	A	G	53.48	PASS	AC=2;AF=0.908;AN=2;DP=237;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,1,4
chr1	197029345	.	G	A	52.74	PASS	AC=1;AF=0.7;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant15-variant21-variant26-variant29-variant31-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:28:81,0,28:1,0,2,0
chr1	197030201	.	T	C	1010.39	PASS	AC=2;AF=0.881;AN=2;DP=1244;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1720,150,0:0,0,10,40
chr1	197031021	.	C	T	1213.96	PASS	AC=2;AF=0.881;AN=2;DP=3000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2968,291,0:0,0,45,52
chr1	197053373	.	G	A	2040.54	PASS	AC=2;AF=0.881;AN=2;DP=3510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3083,302,0:0,0,57,44
chr1	197053561	.	TA	TAA,T	180.13	PASS	AC=1,0;AF=0.534,0.034;AN=2;DP=1454;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-filterInvariant42	GT:DP:GQ:SB	0/1:59:99:14,21,8,16
chr1	197055925	.	T	C	3347.2	PASS	AC=2;AF=0.881;AN=2;DP=3992;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3349,333,0:0,0,62,49
chr1	197059878	.	G	A	657.38	PASS	AC=2;AF=0.869;AN=2;DP=521;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:561,39,0:0,0,13,0
chr1	197059892	.	A	G	887.62	PASS	AC=2;AF=0.881;AN=2;DP=709;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:697,48,0:0,0,16,0
chr1	197059928	.	A	G	1448.11	PASS	AC=2;AF=0.881;AN=2;DP=1653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1348,117,0:0,0,31,8
chr1	197063352	.	C	T	962.66	PASS	AC=1;AF=0.685;AN=2;DP=1758;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:39,30:69:99:659,0,1057:16,23,13,17
chr1	197070442	.	G	T	1292.71	PASS	AC=1;AF=0.685;AN=2;DP=2234;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:61,43:104:99:1120,0,1549:28,33,21,22
chr1	197070697	.	T	C	3436.45	PASS	AC=1;AF=0.685;AN=2;DP=3144;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:62,76:138:99:3026,0,3438:37,25,46,30
chr1	197070707	.	G	A	3538.95	PASS	AC=1;AF=0.685;AN=2;DP=3435;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:69,89:158:99:3303,0,3581:43,26,56,33
chr1	197070815	.	T	C	6470.92	PASS	AC=2;AF=0.893;AN=2;DP=8108;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,261:261:99:7993,783,0:0,0,133,128
chr1	197070901	.	A	G	5425.37	PASS	AC=2;AF=0.989;AN=2;DP=7339;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:6340,578,0:0,0,83,110
chr1	197072420	.	T	C	1604.92	PASS	AC=1;AF=0.685;AN=2;DP=3009;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:60,62:122:99:1512,0,1559:35,25,31,31
chr1	197073196	.	G	A	2375.9	PASS	AC=1;AF=0.5;AN=2;DP=176;FS=2.647;FractionInformativeReads=1;MQ=60;MQRankSum=0.59;QD=13.5;ReadPosRankSum=-0.96;SOR=0.516;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:86,90:176:99:2404,0,2288:34,52,40,50
chr1	197073932	.	T	C	1168.03	PASS	AC=1;AF=0.685;AN=2;DP=2565;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:66,65:131:99:1530,0,1696:32,34,30,35
chr1	197091537	.	A	T	4296.68	PASS	AC=2;AF=0.881;AN=2;DP=5208;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,148:150:99:4589,371,0:2,0,76,72
chr1	197091808	.	T	C	172.41	PASS	AC=1;AF=0.685;AN=2;DP=444;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:213,0,412:3,9,0,6
chr1	197094030	.	C	T	681.26	PASS	AC=1;AF=0.548;AN=2;DP=1010;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant20-variant23-variant26-variant29-variant31-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,42:66:99:973,0,546:16,8,26,16
chr1	197101621	.	T	C	136.65	PASS	AC=1;AF=0.68;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:129,0,155:0,4,1,3
chr1	197102839	.	A	C	2894.17	PASS	AC=2;AF=0.893;AN=2;DP=3710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,115:116:99:3620,310,0:0,1,38,77
chr1	197104149	.	TA	T	57.87	PASS	AC=2;AF=0.953;AN=2;DP=142;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:143,12,0:0,0,4,0
chr1	197109042	.	C	T	705.39	PASS	AC=2;AF=0.881;AN=2;DP=869;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:551,48,0:0,0,4,12
chr1	197112533	.	G	A	6641.83	PASS	AC=2;AF=0.881;AN=2;DP=7959;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:6697,650,0:0,0,104,113
chr1	197113073	.	G	A	1241.31	PASS	AC=2;AF=0.881;AN=2;DP=1495;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1033,93,0:0,0,19,12
chr1	197141243	.	A	C	420.09	PASS	AC=2;AF=0.845;AN=2;DP=1196;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:723,77,0:0,0,15,11
chr1	197147471	.	A	C	66.25	PASS	AC=1;AF=0.685;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:348,0,178:5,1,9,2
chr1	197297540	.	A	T	474.8	PASS	AC=1;AF=0.576;AN=2;DP=958;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:603,0,378:11,4,15,6
chr1	197316435	.	T	C	4138.84	PASS	AC=2;AF=0.814;AN=2;DP=4778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4256,406,0:0,0,86,50
chr1	197325908	.	T	G	3496.87	PASS	AC=2;AF=0.837;AN=2;DP=4396;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3123,290,0:0,0,50,47
chr1	197390368	.	A	G	3690.02	PASS	AC=2;AF=0.966;AN=2;DP=5883;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5210,503,0:0,0,83,85
chr1	197398086	.	A	G	1035.61	PASS	AC=1;AF=0.632;AN=2;DP=2032;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,36:64:99:979,0,642:17,11,25,11
chr1	197407942	.	A	G	7790.81	PASS	AC=2;AF=0.966;AN=2;DP=9351;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:7256,700,0:0,0,94,140
chr1	197408247	.	G	C	9055.11	PASS	AC=2;AF=0.966;AN=2;DP=11771;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,305:305:99:9169,913,0:0,0,156,149
chr1	197408614	.	G	A	10555.6	PASS	AC=2;AF=0.989;AN=2;DP=14414;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,398:398:99:12630,1193,0:0,0,191,207
chr1	197409070	.	C	T	3264.07	PASS	AC=2;AF=0.966;AN=2;DP=3737;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,119:121:99:4266,314,0:1,1,44,75
chr1	197410295	.	C	A	8698.85	PASS	AC=2;AF=0.966;AN=2;DP=10437;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,308:308:99:9549,923,0:0,0,157,151
chr1	197410348	.	T	C	10142.1	PASS	AC=2;AF=0.966;AN=2;DP=11851;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,322:322:99:10348,966,0:0,0,165,157
chr1	197412029	.	C	T	810.22	PASS	AC=1;AF=0.638;AN=2;DP=1192;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:417,0,998:2,23,0,12
chr1	197412251	.	TAA	TA,T	127.49	PASS	AC=0,1;AF=0.549,0.159;AN=2;DP=828;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:14:99:5,2,7,0
chr1	197412372	.	A	G	2058.94	PASS	AC=1;AF=0.5;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:63,82:145:99:2087,0,1388:33,30,53,29
chr1	197412976	.	C	T	1918.1	PASS	AC=1;AF=0.633;AN=2;DP=3504;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,67:138:99:1841,0,1990:52,19,49,18
chr1	197413628	.	C	T	15332.1	PASS	AC=2;AF=0.966;AN=2;DP=17758;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,496:498:99:15987,1472,0:1,1,272,224
chr1	197414036	.	T	TACAC,TAC,TACACAC	935.4	PASS	AC=2,0,0;AF=0.886,0.057,0.023;AN=2;DP=1265;FS=0;set=Intersection	GT:DP:GQ:SB	1/1:18:53:0,0,1,17
chr1	197446702	.	G	T	604.15	PASS	AC=1;AF=0.648;AN=2;DP=1653;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,28:70:99:768,0,1040:25,17,20,8
chr1	197473969	.	A	T	4832.64	PASS	AC=2;AF=0.977;AN=2;DP=7796;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:4,173:177:99:4643,467,0:3,1,73,100
chr1	197474565	.	A	G	6889.41	PASS	AC=2;AF=0.977;AN=2;DP=7689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:7334,639,0:0,0,91,122
chr1	197474817	.	A	G	7584.86	PASS	AC=2;AF=0.989;AN=2;DP=8008;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:7557,684,0:0,0,100,128
chr1	197474845	.	A	ATTAAC	8364.44	PASS	AC=2;AF=0.977;AN=2;DP=7322;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:9157,622,0:0,0,89,109
chr1	197475055	.	CAATCT	C	4967.96	PASS	AC=2;AF=0.977;AN=2;DP=5619;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:6317,426,0:0,0,60,81
chr1	197475085	.	T	C	3400.05	PASS	AC=2;AF=0.977;AN=2;DP=4691;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4273,383,0:0,0,52,76
chr1	197475908	.	C	A	6865.16	PASS	AC=2;AF=0.977;AN=2;DP=11090;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,256:256:99:7936,766,0:0,0,112,144
chr1	197476279	.	CATTATTATTATTATT	C,CATTATT,CATTATTATT,CATT	149.44	PASS	AC=0,0,0,2;AF=0.939,0.012,0.012,0.037;AN=2;DP=846;FS=0;MQ=60;MQRankSum=0.751;ReadPosRankSum=0.751;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:4:15:0,0,2,2
chr1	197477237	.	T	C	13488.2	PASS	AC=2;AF=0.977;AN=2;DP=17749;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,483:483:99:15019,1446,0:0,0,242,241
chr1	197477448	.	C	T	4626.98	PASS	AC=1;AF=0.653;AN=2;DP=12225;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:246,179:425:99:4040,0,6252:107,139,78,101
chr1	197477498	.	G	A	2530.83	PASS	AC=1;AF=0.575;AN=2;DP=4350;MQ=60;set=variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant23-variant26-variant28-variant32-variant33-variant34-variant35-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,111:280:99:2732,0,4558:62,107,42,69
chr1	197477760	.	G	A	1191.87	PASS	AC=1;AF=0.5;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:26,40:66:99:1220,0,821:18,8,24,16
chr1	197477879	.	T	C	4653.11	PASS	AC=1;AF=0.5;AN=2;DP=666;MQ=60;set=variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:219,198:417:99:4681,0,5370:139,80,118,80
chr1	197478756	.	ATT	AT,A	371.25	PASS	AC=1,1;AF=0.524,0.146;AN=2;DP=1849;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/1:45:99:4,0,27,14
chr1	197479378	.	C	A	9486.28	PASS	AC=2;AF=0.977;AN=2;DP=12728;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,348:348:99:10468,1039,0:0,0,143,205
chr1	197480927	.	C	T	1041.95	PASS	AC=1;AF=0.571;AN=2;DP=2830;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,60:128:99:1488,0,1661:37,31,35,25
chr1	197482167	.	C	G	137.64	PASS	AC=2;AF=0.966;AN=2;DP=509;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:401,30,0:0,0,1,9
chr1	197510025	.	G	T	903.22	PASS	AC=2;AF=0.977;AN=2;DP=1166;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1324,114,0:0,0,28,10
chr1	197510299	.	G	A	634.06	PASS	AC=2;AF=1;AN=2;DP=593;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:814,63,0:0,0,3,18
chr1	197515253	.	ATGTTCAG	A	682.97	PASS	AC=2;AF=1;AN=2;DP=531;FS=0;MQ=60;MQRankSum=0.474;ReadPosRankSum=1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,2,10
chr1	197515715	.	G	A	317.08	PASS	AC=2;AF=0.841;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:362,30,0:0,0,8,2
chr1	197515777	.	A	T	1676.77	PASS	AC=2;AF=0.833;AN=2;DP=1795;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2073,189,0:0,0,46,17
chr1	197515981	.	T	C	567.57	PASS	AC=1;AF=0.574;AN=2;DP=983;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:723,0,574:7,16,8,18
chr1	197521877	.	T	C	11904.3	PASS	AC=2;AF=0.841;AN=2;DP=14901;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,463:463:99:13669,1385,0:0,0,239,224
chr1	197576307	.	A	AT	993.9	PASS	AC=2;AF=0.989;AN=2;DP=1531;MQ=60;MQRankSum=0.655;ReadPosRankSum=-0.267;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1341,111,0:0,0,10,26
chr1	197704717	.	C	T	1443.03	PASS	AC=1;AF=0.556;AN=2;DP=2331;MQ=60;set=variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant23-variant26-variant28-variant32-variant33-variant34-variant35-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,71:160:99:1816,0,2302:53,36,47,24
chr1	197741951	.	C	A	1802.45	PASS	AC=2;AF=0.989;AN=2;DP=3083;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2133,250,0:0,0,52,32
chr1	197742171	.	C	T	621.07	PASS	AC=2;AF=0.845;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1042,81,0:0,0,3,24
chr1	197744098	.	G	C	325.25	PASS	AC=1;AF=0.71;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:346,0,134:2,2,9,2
chr1	197872019	.	G	T	2373.25	PASS	AC=1;AF=0.625;AN=2;DP=2996;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,68:161:99:1608,0,2450:33,60,24,44
chr1	197874949	.	T	C	1284.52	PASS	AC=2;AF=0.56;AN=2;DP=2695;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant35-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3702,359,0:0,0,67,53
chr1	197876533	.	C	A	6356.34	PASS	AC=2;AF=0.977;AN=2;DP=8310;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:6980,676,0:0,0,113,113
chr1	197887266	.	C	T	618.34	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:647,0,775:18,8,15,11
chr1	197887838	.	G	C	439.1	PASS	AC=2;AF=0.563;AN=2;DP=352;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant8-filterInvariant9-variant15-variant17-variant20-variant25-variant26-variant27-variant28-variant34-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:683,66,0:0,0,9,13
chr1	197887930	.	G	GC	213.43	PASS	AC=2;AF=0.833;AN=2;DP=17;FS=0;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=variant15-variant34-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:251,18,0:0,0,4,2
chr1	197887940	.	G	GA	142.56	PASS	AC=2;AF=0.667;AN=2;DP=14;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant15-variant34-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,4,0
chr1	197890422	.	C	G	1010.75	PASS	AC=2;AF=0.943;AN=2;DP=2510;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2160,198,0:0,0,47,19
chr1	197890802	.	T	C	2644.28	PASS	AC=2;AF=0.559;AN=2;DP=3721;MQ=60;set=variant5-variant6-variant8-variant9-variant15-variant17-variant20-variant25-variant26-variant27-variant28-variant34-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,251:251:99:8156,753,0:0,0,115,136
chr1	197898023	.	C	CA,CAA	42.44	PASS	AC=2,0;AF=0.568,0.364;AN=2;DP=137;FS=0;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant31-variant32-variant34-variant38-variant40	GT:DP:GQ:SB	1/1:5:18:0,0,3,2
chr1	197900023	.	C	T	11924.6	PASS	AC=2;AF=1;AN=2;DP=14356;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,457:457:99:13975,1368,0:0,0,220,237
chr1	197900589	.	A	C	8045.38	PASS	AC=2;AF=0.943;AN=2;DP=9781;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,277:277:99:8895,830,0:0,0,124,153
chr1	197902871	.	CAAA	CA,C,CAA,CAAAAA	110.71	PASS	AC=2,0,0,0;AF=0.693,0.08,0.068,0.011;AN=2;DP=1778;set=Intersection	GT:DP:GQ:SB	1/1:23:63:0,1,8,14
chr1	197903352	.	T	G	6885.96	PASS	AC=2;AF=0.943;AN=2;DP=8617;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:7200,670,0:0,0,137,87
chr1	197903912	.	G	GT	2074.12	PASS	AC=2;AF=0.579;AN=2;DP=3614;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant15-variant17-variant20-variant25-variant26-variant27-variant28-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5797,574,0:0,0,75,116
chr1	198225846	.	C	T	127.72	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=15.96;ReadPosRankSum=-0.421;SOR=1.981;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,113:1,3,0,4
chr1	198247229	.	C	A	1362.02	PASS	AC=1;AF=0.5;AN=2;DP=212;MQ=60;set=variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:63,59:122:99:1390,0,1523:26,37,20,39
chr1	198290010	.	C	T	3698.26	PASS	AC=1;AF=0.5;AN=2;DP=272;FS=0.455;FractionInformativeReads=0.993;MQ=60;MQRankSum=3.029;QD=13.6;ReadPosRankSum=0.723;SOR=0.757;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:135,135:270:99:3726,0,3295:53,82,51,84
chr1	198663661	.	G	A	5217.92	PASS	AC=1;AF=0.5;AN=2;DP=5800;MQ=60;set=variant10-variant13-variant15-variant16-variant17-variant18-variant22-variant24-variant31-variant32-variant35-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:248,247:495:99:5804,0,5823:140,108,137,110
chr1	198677420	.	T	A	344.87	PASS	AC=1;AF=0.5;AN=2;DP=220;MQ=60;set=variant13-variant15-variant16-variant18-variant22-variant24-variant32-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:409,0,493:6,12,3,11
chr1	198701289	.	T	C	106.77	PASS	AC=1;AF=0.804;AN=2;DP=196;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:111,0,153:4,0,3,0
chr1	198717218	.	GTT	GTTT,G,GTTTT,GT	210.43	PASS	AC=0,0,0,1;AF=0.368,0.074,0.029,0.103;AN=2;DP=1478;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/4:46:99:9,10,11,16
chr1	199996685	.	C	G	2691.49	PASS	AC=1;AF=0.5;AN=2;DP=2275;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant28-variant31-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:112,140:252:99:3321,0,2661:69,43,83,57
chr1	199996821	.	AT	A	3082.46	PASS	AC=1;AF=0.542;AN=2;DP=3329;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant28-variant31-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:166,146:312:99:3195,0,3621:77,89,68,78
chr1	200014762	.	A	G	442.38	PASS	AC=1;AF=0.56;AN=2;DP=1327;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:1114,0,1624:10,20,8,22
chr1	200014766	.	G	T	439.37	PASS	AC=1;AF=0.5;AN=2;DP=767;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant24-variant29-variant31-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:1077,0,1566:8,19,7,20
chr1	200080464	.	C	A,CAA	531.3	PASS	AC=1,0;AF=0.417,0.125;AN=2;DP=974;set=variant4-variant6-variant8-variant12-variant14-filterInvariant15-variant16-variant17-variant18-variant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant28-variant36-variant37-filterInvariant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:41:83:10,20,0,11
chr1	200089872	.	C	T	434.79	PASS	AC=1;AF=0.629;AN=2;DP=1959;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:1044,0,875:23,8,25,13
chr1	200090219	.	C	T	179.63	PASS	AC=1;AF=0.633;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:426,0,419:0,11,0,11
chr1	200143064	.	CTTTTT	CTTTT,CT,CTTT,C	107.95	PASS	AC=0,2,0,0;AF=0.175,0.375,0.025,0.013;AN=2;DP=1044;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-filterInvariant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:43:82:1,2,27,13
chr1	200143442	.	T	C	729.36	PASS	AC=2;AF=0.736;AN=2;DP=2040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2256,208,0:0,0,37,33
chr1	200143844	.	C	G	1126.97	PASS	AC=2;AF=0.78;AN=2;DP=3990;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3539,294,0:0,0,35,63
chr1	200144089	.	T	G	5914.98	PASS	AC=2;AF=0.78;AN=2;DP=16411;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,530:530:99:15887,1586,0:0,0,286,244
chr1	200145509	.	G	A	1285.84	PASS	AC=2;AF=0.744;AN=2;DP=3356;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3617,317,0:0,0,44,62
chr1	200145533	.	G	A	1275.52	PASS	AC=2;AF=0.744;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3391,296,0:0,0,45,54
chr1	200145662	.	G	T	1740.43	PASS	AC=2;AF=0.744;AN=2;DP=6228;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4307,451,0:0,0,69,81
chr1	200145893	.	A	G	722.85	PASS	AC=2;AF=0.78;AN=2;DP=2572;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1771,183,0:0,0,35,26
chr1	200146403	.	T	C	3573.24	PASS	AC=2;AF=0.6;AN=2;DP=1875;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant34-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,417:417:99:12733,1248,0:0,0,191,226
chr1	200146494	.	AAT	A	2616.6	PASS	AC=2;AF=0.625;AN=2;DP=940;MQ=60;set=variant8-variant15-variant34-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,261:261:99:11313,786,0:0,0,101,160
chr1	200182654	.	T	C	1613.59	PASS	AC=2;AF=0.932;AN=2;DP=1979;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2222,156,0:0,0,27,20
chr1	200182664	.	C	T	402.72	PASS	AC=2;AF=0.661;AN=2;DP=1348;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2300,162,0:0,0,32,22
chr1	200182703	.	GGAGGACGCCGGAGAGGAGGCCGGA	G	1354.23	PASS	AC=1;AF=0.588;AN=2;DP=1065;MQ=60;set=variant2-variant7-variant8-variant10-variant13-variant15-variant16-variant20-variant23-variant25-variant29-variant32-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:1145,0,1534:20,18,18,12
chr1	200182721	.	G	C	672.2	PASS	AC=1;AF=0.5;AN=2;DP=584;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:865,0,1190:18,12,14,9
chr1	200182725	.	G	A	666.42	PASS	AC=1;AF=0.5;AN=2;DP=601;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:865,0,1189:18,12,14,9
chr1	200182732	.	A	G	663.41	PASS	AC=1;AF=0.5;AN=2;DP=610;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,23:56:99:856,0,1305:20,13,14,9
chr1	200182733	.	C	T,G	746.91	PASS	AC=1,0;AF=0.5,0.063;AN=2;DP=612;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:DP:GQ:SB	0/1:73:99:20,13,22,18
chr1	200182834	.	A	G	538.45	PASS	AC=2;AF=0.643;AN=2;DP=3144;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,162:163:99:5014,450,0:1,0,90,72
chr1	200183398	.	C	A	460.73	PASS	AC=2;AF=0.661;AN=2;DP=2351;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2257,234,0:0,0,36,42
chr1	200183460	.	C	T	175.33	PASS	AC=2;AF=0.604;AN=2;DP=985;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1120,101,0:0,0,17,17
chr1	200311674	.	C	A	294.97	PASS	AC=1;AF=0.635;AN=2;DP=988;set=variant2-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant32-variant33-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:445,0,798:16,10,12,6
chr1	200311868	.	C	G	1136.92	PASS	AC=1;AF=0.767;AN=2;DP=4604;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,56:117:99:1456,0,1559:28,33,27,29
chr1	200311910	.	T	A	840.98	PASS	AC=1;AF=0.583;AN=2;DP=2079;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant32-variant33-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,54:113:99:1406,0,1436:26,33,26,28
chr1	200312546	.	CAA	CA,C	254	PASS	AC=2,0;AF=0.81,0.071;AN=2;DP=782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:29:36:1,1,7,20
chr1	200342825	.	C	A	443.99	PASS	AC=1;AF=0.767;AN=2;DP=2346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,22:72:99:450,0,1149:28,22,9,13
chr1	200520698	.	T	C	861.44	PASS	AC=1;AF=0.5;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:50,31:81:99:659,0,1516:31,19,18,13
chr1	200521131	.	T	C	4147.85	PASS	AC=2;AF=0.875;AN=2;DP=12887;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,391:391:99:11783,1169,0:0,0,210,181
chr1	200521291	.	TTTC	T	2272.78	PASS	AC=1;AF=0.606;AN=2;DP=5203;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,83:179:99:2745,0,4057:35,61,30,53
chr1	200521412	.	G	A	1512.57	PASS	AC=1;AF=0.718;AN=2;DP=5039;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,72:145:99:1848,0,1957:39,34,33,39
chr1	200522039	.	T	G	245.29	PASS	AC=2;AF=0.767;AN=2;DP=816;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:845,60,0:0,0,1,19
chr1	200522043	.	TTTTATTTATTTATTTATTTA	TTTTA,T,TTTTATTTA,TTTTATTTATTTA	193.63	PASS	AC=2,0,0,0;AF=0.5,0.147,0.074,0.029;AN=2;DP=583;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:19:57:0,0,1,18
chr1	200522269	.	G	A	228.07	PASS	AC=1;AF=0.743;AN=2;DP=563;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:225,0,320:8,1,6,0
chr1	200522351	.	A	T	676.11	PASS	AC=1;AF=0.782;AN=2;DP=2294;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:841,0,790:21,10,20,13
chr1	200522566	.	G	C	1447.42	PASS	AC=1;AF=0.606;AN=2;DP=3701;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,44:113:99:1193,0,1813:35,34,23,21
chr1	200523514	.	A	G	233.9	PASS	AC=2;AF=0.803;AN=2;DP=401;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:38:450,38,0:0,0,10,3
chr1	200523550	.	T	C	261.67	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:9,24:33:99:627,0,254:7,2,16,8
chr1	200534248	.	C	T	1701.58	PASS	AC=1;AF=0.782;AN=2;DP=4466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,67:147:99:1614,0,1887:49,31,41,26
chr1	200538885	.	C	T	319.54	PASS	AC=2;AF=0.884;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:65:634,65,0:0,0,13,9
chr1	200544672	.	CAT	C	269.74	PASS	AC=1;AF=0.5;AN=2;DP=118;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:498,0,623:13,4,11,4
chr1	200549327	.	CTT	C	37.68	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,78:2,0,1,1
chr1	200549451	.	T	C	290.03	PASS	AC=1;AF=0.5;AN=2;DP=158;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:512,0,263:7,7,12,11
chr1	200549590	.	T	C	34.7	PASS	AC=1;AF=0.797;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,77:1,2,1,2
chr1	200550243	.	GAAAAAAA	GAAAAAAAAAA,GAAAAAAAAA,GAAAAAAAAAAAAAAAAAA,GAAAAAAAA,G,GAAAAAAAAAAAAA,GAAAAAAAAAAAAAA,GAAAAAAAAAAAA	184.51	PASS	AC=0,0,0,0,1,0,0,0;AF=0.25,0.182,0.023,0.068,0.091,0.023,0.068,0.023;AN=2;DP=151;FS=0;set=variant-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant28-variant33-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/5:11:87:3,1,6,1
chr1	200550501	.	A	C	824.3	PASS	AC=1;AF=0.5;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:39,30:69:99:795,0,924:14,25,9,21
chr1	200550561	.	T	C	367.55	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:339,0,458:1,12,2,9
chr1	200555203	.	G	T	168.2	PASS	AC=1;AF=0.583;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant14-variant15-variant17-variant27-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:227,0,142:4,2,6,4
chr1	200555482	.	C	T	80.65	PASS	AC=1;AF=0.606;AN=2;DP=488;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:243,0,569:7,12,2,8
chr1	200558363	.	T	C	829.21	PASS	AC=2;AF=0.875;AN=2;DP=4249;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3590,371,0:0,0,60,64
chr1	200558538	.	G	A	186.39	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:324,0,133:0,4,2,8
chr1	200561456	.	T	C	288.97	PASS	AC=1;AF=0.577;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant11-variant14-variant15-variant17-variant34-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:343,0,231:2,7,1,9
chr1	200562943	.	A	C	486.05	PASS	AC=1;AF=0.5;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:340,0,715:6,17,6,9
chr1	200569392	.	C	A	1141.94	PASS	AC=2;AF=0.977;AN=2;DP=2799;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2955,252,0:0,0,48,36
chr1	200571199	.	A	G	541.98	PASS	AC=1;AF=0.5;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:53,48:101:99:1006,0,1365:20,33,20,28
chr1	200577919	.	C	A	246.1	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:189,0,237:6,2,5,2
chr1	200578093	.	G	A	831.74	PASS	AC=2;AF=0.977;AN=2;DP=1748;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1393,144,0:0,0,20,28
chr1	200587973	.	G	GA	1354.16	PASS	AC=1;AF=0.5;AN=2;DP=843;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:126,112:238:99:2359,0,2815:39,87,33,79
chr1	200587997	.	C	T	1457.18	PASS	AC=1;AF=0.5;AN=2;DP=632;MQ=60;set=variant9-variant14-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:96,93:189:99:2731,0,2672:30,66,21,72
chr1	200589813	.	C	A	383.39	PASS	AC=1;AF=0.613;AN=2;DP=1857;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,31:78:99:698,0,1753:20,27,14,17
chr1	200589831	.	G	A	541.6	PASS	AC=1;AF=0.571;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant14-variant15-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1047,0,1239:14,21,15,26
chr1	200593325	.	C	T	103.26	PASS	AC=1;AF=0.617;AN=2;DP=642;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-filterInvariant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:321,0,164:5,3,7,7
chr1	200593402	.	A	G	491.07	PASS	AC=1;AF=0.583;AN=2;DP=246;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant19-variant23-variant29-variant33	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:377,0,924:14,11,8,10
chr1	200593418	.	T	TG	507.99	PASS	AC=1;AF=0.617;AN=2;DP=1177;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:833,0,705:8,11,12,11
chr1	200593468	.	T	A	604.65	PASS	AC=1;AF=0.617;AN=2;DP=1080;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:543,0,459:10,11,12,14
chr1	200593535	.	CTAT	C,CTATTATTATTATTAT,CTATTATTATTATTATTAT	485.55	PASS	AC=1,0,0;AF=0.638,0.034,0.017;AN=2;DP=490;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:20:99:4,4,4,8
chr1	200593551	.	T	C	494.4	PASS	AC=1;AF=0.661;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:389,0,300:4,4,4,8
chr1	200593562	.	A	T	472.64	PASS	AC=1;AF=0.679;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:228,0,318:4,4,2,4
chr1	200594240	.	G	A	1679.22	PASS	AC=2;AF=1;AN=2;DP=1673;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1944,161,0:0,0,9,45
chr1	200610525	.	TA	T	128.3	PASS	AC=2;AF=0.923;AN=2;DP=450;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:157,18,0:0,0,1,5
chr1	200618238	.	T	C	822.66	PASS	AC=1;AF=0.943;AN=2;DP=2846;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,50:91:99:1107,0,819:21,20,24,26
chr1	200619478	.	C	A	187.9	PASS	AC=2;AF=1;AN=2;DP=541;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:731,51,0:0,0,17,0
chr1	200619530	.	T	C	1234.47	PASS	AC=2;AF=1;AN=2;DP=1617;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1943,162,0:0,0,42,12
chr1	200638847	.	A	G	334.7	PASS	AC=1;AF=0.667;AN=2;DP=1056;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:491,0,482:12,7,11,8
chr1	200639023	.	TGCGGA	T,TGCGGGGCGGAGCGGA,TGCGGGGCGGAGCGGAGCGGA,TGCGGGGCGGAGCGGAGCGGAGCGGAGCGGA,TGCGGGGCGGA	1395.66	PASS	AC=1,0,0,0,0;AF=0.086,0.414,0.017,0.017,0.017;AN=2;DP=2417;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:109:99:20,25,31,33
chr1	200639040	.	CGGAGCGTAGA	C	355.37	PASS	AC=1;AF=0.667;AN=2;DP=2467;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,45:112:99:1688,0,2677:34,33,20,25
chr1	200639156	.	G	A	96.25	PASS	AC=1;AF=0.677;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:187,0,479:7,8,0,6
chr1	200816519	.	T	G	168.84	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:197,0,624:5,11,2,6
chr1	200816521	.	G	T	631.52	PASS	AC=1;AF=0.778;AN=2;DP=914;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:421,0,288:2,6,5,11
chr1	200816658	.	T	C	623.01	PASS	AC=2;AF=1;AN=2;DP=592;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:586,42,0:0,0,11,3
chr1	200824978	.	C	T	130.7	PASS	AC=1;AF=0.661;AN=2;DP=263;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:160,0,875:7,3,4,1
chr1	200824980	.	C	T	130.7	PASS	AC=1;AF=0.643;AN=2;DP=263;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:160,0,875:7,3,3,1
chr1	200824981	.	C	T	130.7	PASS	AC=1;AF=0.643;AN=2;DP=269;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:160,0,875:7,3,3,1
chr1	200826587	.	A	G	1678.61	PASS	AC=1;AF=0.5;AN=2;DP=281;FractionInformativeReads=1;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:85,70:155:99:1707,0,2051:45,40,39,31
chr1	200842005	.	T	A	2900.7	PASS	AC=1;AF=0.661;AN=2;DP=1581;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,44:58:99:1781,0,748:10,4,33,11
chr1	200842006	.	C	G	2900.7	PASS	AC=1;AF=0.661;AN=2;DP=1631;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,44:59:99:1781,0,748:11,4,33,11
chr1	200843305	.	G	T	3143.46	PASS	AC=1;AF=0.685;AN=2;DP=3142;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,73:166:99:1749,0,2524:39,54,30,43
chr1	200867492	.	C	G	901.24	PASS	AC=1;AF=0.587;AN=2;DP=1418;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant13-variant15-variant17-variant20-variant21-variant24-variant28-variant30-variant31-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,31:75:99:727,0,1125:23,21,18,13
chr1	200867552	.	C	T	306.99	PASS	AC=1;AF=0.5;AN=2;DP=232;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant15-variant37	GT:AD:DP:GQ:PL:SB	0/1:36,40:76:99:967,0,816:17,19,15,25
chr1	200877786	.	T	C	51.24	PASS	AC=1;AF=0.625;AN=2;DP=678;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:600,0,397:11,7,15,7
chr1	200880869	.	A	C	970.33	PASS	AC=1;AF=0.571;AN=2;DP=676;FractionInformativeReads=1;set=variant-variant9-variant15-variant17-variant22-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:61,54:115:99:1520,0,1517:27,34,16,38
chr1	200880978	.	C	T	1054.2	PASS	AC=2;AF=0.808;AN=2;DP=1789;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2024,193,0:0,0,28,37
chr1	200881172	.	C	A	995.71	PASS	AC=1;AF=0.694;AN=2;DP=3968;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,58:135:99:1190,0,1769:43,34,32,26
chr1	200938474	.	G	T	73.27	PASS	AC=1;AF=0.63;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant18-variant20-variant21-variant24-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:191,0,263:7,1,3,5
chr1	200940180	.	G	A	458.17	PASS	AC=1;AF=0.597;AN=2;DP=1797;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:558,0,745:13,13,12,9
chr1	200941423	.	C	A	329.98	PASS	AC=1;AF=0.583;AN=2;DP=887;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:45,29:74:99:564,0,1034:25,20,15,14
chr1	200941549	.	T	C	2295.06	PASS	AC=2;AF=1;AN=2;DP=3775;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2931,276,0:0,0,50,42
chr1	200941716	.	G	A	1087.02	PASS	AC=1;AF=0.6;AN=2;DP=2958;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,50:122:99:1099,0,1748:28,44,20,30
chr1	200943793	.	CAGGA	C	907.85	PASS	AC=2;AF=1;AN=2;DP=3107;FS=0;MQ=60;MQRankSum=0.976;ReadPosRankSum=0.682;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:4495,301,0:0,0,65,35
chr1	200944840	.	T	G	337.45	PASS	AC=2;AF=0.825;AN=2;DP=710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:853,81,0:0,0,12,15
chr1	200952336	.	C	G	205.45	PASS	AC=1;AF=0.577;AN=2;DP=361;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,25:38:99:703,0,366:5,8,9,16
chr1	200954186	.	T	C	258.14	PASS	AC=1;AF=0.577;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:479,0,198:0,6,0,12
chr1	200956288	.	A	G	551.82	PASS	AC=1;AF=0.577;AN=2;DP=1372;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,63:116:99:1729,0,1115:25,28,27,36
chr1	200957691	.	G	C	397.46	PASS	AC=1;AF=0.577;AN=2;DP=482;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,22:31:99:637,0,261:9,0,9,13
chr1	200958111	.	A	C	1130.76	PASS	AC=1;AF=0.577;AN=2;DP=1038;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1271,0,1020:13,24,19,27
chr1	200959052	.	T	G	240.59	PASS	AC=1;AF=0.577;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,47:72:99:1103,0,578:15,10,26,21
chr1	200959302	.	G	A	925	PASS	AC=1;AF=0.577;AN=2;DP=2573;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,108:222:99:2601,0,2709:55,59,50,58
chr1	200960886	.	C	T	505.63	PASS	AC=1;AF=0.577;AN=2;DP=682;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,19:59:99:480,0,1085:21,19,11,8
chr1	200960898	.	A	T	417.19	PASS	AC=1;AF=0.583;AN=2;DP=605;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:40,18:58:99:460,0,1052:21,19,10,8
chr1	200960915	.	T	C	451.46	PASS	AC=1;AF=0.577;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,19:59:99:435,0,1051:19,21,10,9
chr1	200965601	.	G	A	830.74	PASS	AC=1;AF=0.6;AN=2;DP=1568;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,37:61:99:997,0,626:11,13,16,21
chr1	200967490	.	A	G	117.84	PASS	AC=1;AF=0.617;AN=2;DP=908;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:456,0,774:19,13,13,7
chr1	200968879	.	G	A	234.4	PASS	AC=1;AF=0.625;AN=2;DP=195;FractionInformativeReads=1;set=variant-variant10-variant15-variant17-variant22-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:294,0,513:13,2,8,2
chr1	200969766	.	G	A	3348.02	PASS	AC=1;AF=0.611;AN=2;DP=2458;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:152,136:288:99:3196,0,3668:72,80,58,78
chr1	200969921	.	G	A	805.51	PASS	AC=1;AF=0.611;AN=2;DP=694;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1242,0,1048:10,27,17,29
chr1	200969942	.	A	G	532.21	PASS	AC=1;AF=0.611;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:27,40:67:99:1126,0,634:9,18,14,26
chr1	200969983	.	T	C	289.35	PASS	AC=1;AF=0.591;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant26-variant27-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:585,0,297:6,8,6,15
chr1	200971250	.	C	T	569.49	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=2.263;FractionInformativeReads=1;MQ=60;MQRankSum=-0.471;QD=9.82;ReadPosRankSum=-0.675;SOR=1.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:598,0,847:20,13,17,8
chr1	200971521	.	G	A	597.62	PASS	AC=1;AF=0.611;AN=2;DP=668;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:41,54:95:99:2116,0,2083:14,27,15,39
chr1	200971528	.	G	T	552.52	PASS	AC=1;AF=0.611;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1976,0,2083:14,27,15,34
chr1	200977978	.	C	G	1750.44	PASS	AC=1;AF=0.5;AN=2;DP=152;FS=1.265;FractionInformativeReads=1;MQ=60;MQRankSum=2.021;QD=11.52;ReadPosRankSum=-0.463;SOR=0.76;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:83,69:152:99:1779,0,1943:42,41,33,36
chr1	201008582	.	T	TG	151.64	PASS	AC=1;AF=0.679;AN=2;DP=486;MQ=60;set=variant-variant2-variant5-variant7-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:121,0,252:8,1,4,1
chr1	201009182	.	A	G	685.07	PASS	AC=1;AF=0.591;AN=2;DP=1017;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant23-variant26-variant27-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,52:119:99:1131,0,1695:23,44,22,30
chr1	201009897	.	T	C	828.78	PASS	AC=2;AF=1;AN=2;DP=1696;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:974,93,0:0,0,9,22
chr1	201010862	.	T	C	337.64	PASS	AC=1;AF=0.667;AN=2;DP=794;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:381,0,676:3,18,1,12
chr1	201012247	.	C	T	377.4	PASS	AC=1;AF=0.643;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant22-variant23-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:406,0,352:8,1,11,0
chr1	201013387	.	C	T	1965.28	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.53;QD=14.67;ReadPosRankSum=-0.839;SOR=0.751;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:60,74:134:99:1994,0,1683:44,16,55,19
chr1	201016296	.	G	A	1488.9	PASS	AC=1;AF=0.55;AN=2;DP=1458;MQ=60;set=variant13-variant15-variant17-variant32-variant34-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:126,75:201:99:1705,0,3284:66,60,39,36
chr1	201016646	.	C	T	977.41	PASS	AC=1;AF=0.545;AN=2;DP=1021;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant23-variant26-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,57:121:99:1620,0,1751:41,23,39,18
chr1	201017687	.	C	CT	1008.95	PASS	AC=1;AF=0.6;AN=2;DP=1116;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant23-variant26-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:69,63:132:99:1941,0,2186:42,27,36,27
chr1	201020105	.	A	G	1678.17	PASS	AC=2;AF=0.768;AN=2;DP=3544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3195,306,0:0,0,63,39
chr1	201020574	.	T	G	222.72	PASS	AC=2;AF=0.789;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:234,21,0:0,0,2,5
chr1	201021619	.	C	G	323.43	PASS	AC=1;AF=0.563;AN=2;DP=533;MQ=60;set=variant-variant10-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant26-variant27-variant30-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:317,0,628:16,1,8,2
chr1	201030668	.	G	A	144.09	PASS	AC=1;AF=0.55;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant14-variant15-variant19-variant25-variant26-variant30-variant31-variant38	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:620,0,353:6,9,5,15
chr1	201030988	.	C	T	512.95	PASS	AC=1;AF=0.563;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=variant-variant14-variant15-variant19-variant25-variant26-variant30-variant31	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1097,0,961:21,12,26,17
chr1	201031059	.	A	G	522.21	PASS	AC=1;AF=0.5;AN=2;DP=314;MQ=60;set=variant-variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:69,81:150:99:2031,0,1663:38,31,44,37
chr1	201031307	.	A	C	152.85	PASS	AC=1;AF=0.686;AN=2;DP=780;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,20:29:99:599,0,307:1,8,5,15
chr1	201038687	.	A	G	1054.56	PASS	AC=1;AF=0.633;AN=2;DP=2567;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,40:94:99:931,0,1296:24,30,13,27
chr1	201042618	.	G	A	389.72	PASS	AC=2;AF=0.667;AN=2;DP=651;MQ=60;set=variant3-variant5-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:846,78,0:0,0,20,6
chr1	201044583	.	T	C	58.98	PASS	AC=1;AF=0.5;AN=2;DP=1848;MQ=60;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant8-filterInvariant9-variant11-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:41,21:62:99:352,0,1961:5,36,21,0
chr1	201044587	.	T	C	194.3	PASS	AC=1;AF=0.5;AN=2;DP=1602;MQ=60;set=variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant11-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,11:54:99:346,0,2028:7,36,11,0
chr1	201044748	.	A	G	2400.4	PASS	AC=2;AF=0.782;AN=2;DP=7390;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6113,632,0:0,0,96,115
chr1	201046025	.	G	T	1173.68	PASS	AC=1;AF=0.5;AN=2;DP=1013;MQ=60;set=variant5-variant14-variant15-variant23-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:112,77:189:99:1768,0,2925:63,49,46,31
chr1	201047062	.	G	A	833.62	PASS	AC=1;AF=0.568;AN=2;DP=1773;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant21-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1311,0,999:26,17,28,22
chr1	201047075	.	A	G	830.63	PASS	AC=1;AF=0.713;AN=2;DP=3651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,52:105:99:1302,0,1203:31,22,28,24
chr1	201052199	.	T	C	826.67	PASS	AC=1;AF=0.568;AN=2;DP=1152;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant21-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,26:58:99:860,0,1008:26,6,21,5
chr1	201060865	.	G	A	1312.17	PASS	AC=1;AF=0.615;AN=2;DP=3837;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,90:168:99:2099,0,1987:32,46,43,47
chr1	201061387	.	A	T	315.42	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant15-variant34-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:344,0,314:1,9,3,9
chr1	201079458	.	T	A	347.27	PASS	AC=1;AF=0.606;AN=2;DP=2798;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:1072,0,1113:11,29,10,29
chr1	201081283	.	AC	A,ACC	525.29	PASS	AC=1,0;AF=0.5,0.063;AN=2;DP=817;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant30-variant33-variant39-variant41	GT:DP:GQ:SB	0/1:40:99:14,7,16,3
chr1	201083343	.	A	G	754.73	PASS	AC=1;AF=0.6;AN=2;DP=2066;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,35:58:99:1138,0,591:11,12,19,16
chr1	201083506	.	A	G	1267.92	PASS	AC=1;AF=0.6;AN=2;DP=4021;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,98:157:99:2464,0,1320:29,30,47,51
chr1	201083886	.	C	G	1564.03	PASS	AC=1;AF=0.533;AN=2;DP=2636;MQ=60;set=variant-variant4-variant6-variant7-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,96:184:99:2322,0,2021:34,54,41,55
chr1	201083930	.	A	G	1324.83	PASS	AC=1;AF=0.5;AN=2;DP=234;FractionInformativeReads=1;MQ=60;set=variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1353,0,1657:29,39,15,36
chr1	201096383	.	A	G	565.45	PASS	AC=1;AF=0.6;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:431,0,443:4,10,7,8
chr1	201104341	.	T	TA	1181.31	PASS	AC=1;AF=0.603;AN=2;DP=2843;set=variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,45:96:99:1301,0,1528:27,24,22,23
chr1	201104556	.	C	A	181.19	PASS	AC=1;AF=0.531;AN=2;DP=628;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant33-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:515,0,493:10,10,10,10
chr1	201104589	.	A	G	508.47	PASS	AC=1;AF=0.603;AN=2;DP=1192;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:854,0,539:14,10,19,15
chr1	201112981	.	A	G	2086.61	PASS	AC=1;AF=0.714;AN=2;DP=5063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,93:159:99:2253,0,1395:36,30,53,40
chr1	201113118	.	A	G	1724.33	PASS	AC=2;AF=0.932;AN=2;DP=4962;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4059,401,0:0,0,52,82
chr1	201115822	.	A	G	1175.3	PASS	AC=1;AF=0.543;AN=2;DP=3714;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant31-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:102,97:199:99:2367,0,2605:48,54,54,43
chr1	201116018	.	C	G	1234.79	PASS	AC=2;AF=0.932;AN=2;DP=2556;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2023,183,0:0,0,21,40
chr1	201122784	.	C	T	441.42	PASS	AC=1;AF=0.714;AN=2;DP=1831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:818,0,423:12,5,18,9
chr1	201122947	.	T	G	1564.58	PASS	AC=2;AF=0.932;AN=2;DP=4504;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3084,294,0:0,0,48,50
chr1	201140516	.	G	A	186.65	PASS	AC=1;AF=0.536;AN=2;DP=351;MQ=60;set=variant-variant6-variant7-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:292,0,670:17,10,10,6
chr1	201140614	.	G	T	272.17	PASS	AC=1;AF=0.536;AN=2;DP=792;MQ=60;set=variant-variant6-variant7-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:652,0,897:16,18,13,16
chr1	201162411	.	G	A	1636.75	PASS	AC=1;AF=0.596;AN=2;DP=1385;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:990,0,730:13,18,18,19
chr1	201162643	.	G	A	40.75	PASS	AC=1;AF=0.786;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant22-variant28-variant34-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,124:2,3,1,1
chr1	201163191	.	G	T	1454.03	PASS	AC=1;AF=0.681;AN=2;DP=2349;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,49:88:99:1357,0,1002:24,15,27,22
chr1	201164764	.	T	C	544.18	PASS	AC=1;AF=0.609;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant33-variant35-variant36-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:244,0,102:2,2,6,3
chr1	201164930	.	A	G	1321.58	PASS	AC=1;AF=0.55;AN=2;DP=494;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant11-variant12-variant13-variant15-variant32-variant36-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:581,0,947:24,10,16,6
chr1	201166383	.	G	A	3568.04	PASS	AC=1;AF=0.681;AN=2;DP=5646;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,106:209:99:2558,0,2578:39,64,45,61
chr1	201166435	.	T	C	1630.72	PASS	AC=2;AF=0.93;AN=2;DP=4439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:4080,353,0:0,0,37,81
chr1	201166598	.	C	T	539.79	PASS	AC=1;AF=0.596;AN=2;DP=500;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:410,0,324:3,9,5,10
chr1	201168499	.	G	A	4208.64	PASS	AC=1;AF=0.607;AN=2;DP=2269;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant12-variant13-variant15-variant20-variant32-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:95,100:195:99:2472,0,2462:36,59,43,57
chr1	201168589	.	T	C	2671.18	PASS	AC=1;AF=0.607;AN=2;DP=1159;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant12-variant13-variant15-variant20-variant32-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:35,51:86:99:1531,0,931:10,25,28,23
chr1	201169059	.	T	TA	299.35	PASS	AC=1;AF=0.65;AN=2;DP=114;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant12-variant13-variant15-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:34:269,0,34:1,1,1,7
chr1	201169554	.	T	G	2007.51	PASS	AC=1;AF=0.643;AN=2;DP=1222;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant12-variant13-variant15-variant20-variant32-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:53,48:101:99:1204,0,1337:20,33,16,32
chr1	201169601	.	C	T	2819.12	PASS	AC=1;AF=0.609;AN=2;DP=1111;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:855,0,871:5,22,4,24
chr1	201170772	.	A	G	2088.19	PASS	AC=2;AF=0.943;AN=2;DP=2168;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2115,194,0:0,0,43,22
chr1	201170824	.	C	G	3259.2	PASS	AC=2;AF=0.943;AN=2;DP=4657;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3940,401,0:0,0,76,58
chr1	201171007	.	T	G	503.79	PASS	AC=1;AF=0.788;AN=2;DP=1671;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:633,0,686:4,18,5,16
chr1	201173104	.	C	T	321.22	PASS	AC=1;AF=0.726;AN=2;DP=2318;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:802,0,1029:10,26,10,21
chr1	201173150	.	C	A	196.89	PASS	AC=1;AF=0.5;AN=2;DP=340;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant12-variant13-variant15-variant16-variant21-variant32-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:420,0,607:5,16,6,10
chr1	201175075	.	C	G	479.47	PASS	AC=1;AF=0.529;AN=2;DP=575;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:568,0,731:19,3,14,6
chr1	201175227	.	C	A	3948.19	PASS	AC=2;AF=0.744;AN=2;DP=7586;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,232:233:99:6918,686,0:1,0,126,106
chr1	201175715	.	G	T	2284.79	PASS	AC=2;AF=0.744;AN=2;DP=3975;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2642,248,0:0,0,44,39
chr1	201176018	.	A	G	947.96	PASS	AC=2;AF=0.756;AN=2;DP=2465;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2761,248,0:0,0,35,48
chr1	201176108	.	G	A	944.65	PASS	AC=1;AF=0.55;AN=2;DP=1276;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,48:91:99:1226,0,1107:19,24,25,23
chr1	201176968	.	A	G	1782.73	PASS	AC=1;AF=0.55;AN=2;DP=1894;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,74:141:99:1882,0,1699:31,36,37,37
chr1	201177246	.	T	C	1909.09	PASS	AC=1;AF=0.55;AN=2;DP=2523;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,77:138:99:2054,0,1473:31,30,36,41
chr1	201177278	.	C	T	1853.34	PASS	AC=1;AF=0.55;AN=2;DP=2558;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,70:133:99:1801,0,1717:32,31,30,40
chr1	201177538	.	G	T	1416.02	PASS	AC=1;AF=0.55;AN=2;DP=1960;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,75:140:99:1925,0,1674:36,29,38,37
chr1	201178470	.	G	A	5638.48	PASS	AC=1;AF=0.55;AN=2;DP=5211;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:140,149:289:99:4278,0,3945:83,57,84,65
chr1	201178965	.	A	G	2927.9	PASS	AC=1;AF=0.5;AN=2;DP=4765;set=variant-filterInvariant3-filterInvariant15-filterInvariant16-variant17-variant19-variant22-variant30-filterInvariant32-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:468,63:531:99:706,0,19063:221,247,22,41
chr1	201178977	.	C	T	487.51	PASS	AC=1;AF=0.5;AN=2;DP=2573;set=filterInvariant15-variant19-filterInvariant22-variant30-filterInvariant32-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:480,49:529:99:516,0,17868:221,259,16,33
chr1	201180084	.	G	T	5267.04	PASS	AC=1;AF=0.55;AN=2;DP=6291;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:171,206:377:99:5358,0,4318:67,104,66,140
chr1	201180140	.	C	T	2024.54	PASS	AC=1;AF=0.5;AN=2;DP=4465;set=variant3-variant4-variant6-variant13-variant14-variant15-variant17-filterInvariant19-variant20-variant27-variant29-variant31-variant33-variant34-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:257,71:328:99:1431,0,8987:125,132,15,56
chr1	201180145	.	G	A	3658.49	PASS	AC=1;AF=0.5;AN=2;DP=10897;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:189,130:319:99:4775,0,7494:107,82,33,97
chr1	201180148	.	A	G	3645.8	PASS	AC=1;AF=0.5;AN=2;DP=10844;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:192,125:317:99:4614,0,7878:115,77,31,94
chr1	201180153	.	A	G	3351.98	PASS	AC=1;AF=0.5;AN=2;DP=11055;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:212,115:327:99:4285,0,8685:125,87,29,86
chr1	201180162	.	A	C	3126.83	PASS	AC=1;AF=0.5;AN=2;DP=10482;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:244,99:343:99:3423,0,10279:146,98,25,74
chr1	201180172	.	G	A	2232.85	PASS	AC=1;AF=0.5;AN=2;DP=10477;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant17-variant18-variant19-variant20-variant22-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:283,81:364:99:2582,0,11810:164,119,18,63
chr1	201180193	.	A	G	642.65	PASS	AC=1;AF=0.5;AN=2;DP=10514;set=variant-variant2-filterInvariant3-filterInvariant4-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant17-variant18-variant19-variant20-variant22-variant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:332,33:365:99:335,0,13083:186,146,6,27
chr1	201180501	.	T	C	6641.65	PASS	AC=1;AF=0.548;AN=2;DP=10278;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:282,270:552:99:6700,0,7448:134,148,122,148
chr1	201181217	.	A	G	3714.61	PASS	AC=1;AF=0.55;AN=2;DP=4390;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:141,145:286:99:3655,0,3319:76,65,75,70
chr1	201181223	.	A	G	5963.39	PASS	AC=2;AF=1;AN=2;DP=9965;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,288:288:99:11028,869,0:0,0,153,135
chr1	201181920	.	G	T	1804.9	PASS	AC=1;AF=0.55;AN=2;DP=2227;FractionInformativeReads=1;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,37:94:99:799,0,1591:30,27,20,17
chr1	201182779	.	A	G	1014.02	PASS	AC=1;AF=0.55;AN=2;DP=1585;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1075,0,1487:18,38,15,27
chr1	201183363	.	C	T	2012.84	PASS	AC=1;AF=0.55;AN=2;DP=3290;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,102:185:99:2345,0,1959:43,40,55,47
chr1	201183402	.	T	C	2953.29	PASS	AC=1;AF=0.55;AN=2;DP=4080;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:110,111:221:99:2498,0,2540:59,51,58,53
chr1	201184275	.	C	T	743.17	PASS	AC=1;AF=0.55;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:499,0,764:14,15,4,13
chr1	201187764	.	T	C	1381.83	PASS	AC=1;AF=0.864;AN=2;DP=6566;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,100:175:99:2454,0,1850:40,35,45,55
chr1	201187828	.	T	C	872.32	PASS	AC=1;AF=0.864;AN=2;DP=4629;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,65:124:99:1715,0,1503:24,35,21,44
chr1	201187954	.	C	T	207.96	PASS	AC=1;AF=0.864;AN=2;DP=726;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,232:0,6,0,4
chr1	201193668	.	G	T	1317.73	PASS	AC=2;AF=0.898;AN=2;DP=3935;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,112:113:99:3653,329,0:1,0,69,43
chr1	201194041	.	G	A	609.07	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;SOR=0.446;set=variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:637,0,421:1,11,3,17
chr1	201195119	.	C	T	1994.67	PASS	AC=2;AF=0.694;AN=2;DP=8034;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,280:281:99:8707,831,0:1,0,151,129
chr1	201197331	.	G	A	197.88	PASS	AC=2;AF=0.676;AN=2;DP=904;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1478,126,0:0,0,32,10
chr1	201197808	.	T	A	1207.13	PASS	AC=2;AF=0.667;AN=2;DP=1940;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2676,257,0:0,0,45,41
chr1	201198183	.	A	G	70.66	PASS	AC=2;AF=0.927;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,1,4
chr1	201252701	.	A	T	2922.89	PASS	AC=2;AF=0.825;AN=2;DP=3754;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3308,328,0:0,0,54,56
chr1	201282167	.	C	G	241.77	PASS	AC=2;AF=0.75;AN=2;DP=779;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1281,96,0:0,0,29,3
chr1	201285759	.	A	G	1540.25	PASS	AC=2;AF=0.989;AN=2;DP=2887;MQ=60;MQRankSum=-0.525;ReadPosRankSum=0.673;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1830,174,0:0,0,29,29
chr1	201285909	.	A	G	322.85	PASS	AC=2;AF=0.814;AN=2;DP=729;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:623,54,0:0,0,4,14
chr1	201286614	.	GA	G	457.73	PASS	AC=2;AF=0.907;AN=2;DP=1399;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1780,120,0:0,0,24,15
chr1	201286628	.	C	G	553.59	PASS	AC=2;AF=0.907;AN=2;DP=1676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2068,150,0:0,0,30,20
chr1	201288007	.	G	A	613.12	PASS	AC=2;AF=0.917;AN=2;DP=947;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:515,60,0:0,0,9,11
chr1	201288898	.	A	C	571.36	PASS	AC=2;AF=1;AN=2;DP=3035;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2491,237,0:0,0,50,29
chr1	201290968	.	T	G	752.17	PASS	AC=2;AF=1;AN=2;DP=1632;FS=0;MQ=60;MQRankSum=1.238;ReadPosRankSum=0.413;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1315,108,0:0,0,30,6
chr1	201291066	.	C	T	3618.84	PASS	AC=2;AF=0.756;AN=2;DP=6448;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5215,525,0:0,0,101,75
chr1	201292110	.	T	C	915.68	PASS	AC=2;AF=1;AN=2;DP=2851;FS=0;MQ=60;MQRankSum=1.606;ReadPosRankSum=0.472;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1766,167,0:0,0,36,20
chr1	201293512	.	TG	T	2618.6	PASS	AC=2;AF=0.764;AN=2;DP=3373;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:4222,358,0:0,0,73,46
chr1	201293970	.	C	T	366.99	PASS	AC=2;AF=0.989;AN=2;DP=515;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;ReadPosRankSum=-0.731;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:554,48,0:0,0,12,4
chr1	201293985	.	G	A	415.31	PASS	AC=2;AF=0.829;AN=2;DP=562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:709,66,0:0,0,17,5
chr1	201299263	.	A	G	511.33	PASS	AC=2;AF=1;AN=2;DP=595;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=-0.964;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:535,60,0:0,0,10,10
chr1	201299393	.	T	G	709.57	PASS	AC=2;AF=0.977;AN=2;DP=777;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:422,33,0:0,0,8,3
chr1	201299470	.	A	C	1130.08	PASS	AC=2;AF=0.854;AN=2;DP=1299;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1026,84,0:0,0,20,8
chr1	201299748	.	G	A	2607.3	PASS	AC=2;AF=0.8;AN=2;DP=2963;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2589,234,0:0,0,31,48
chr1	201299785	.	A	C	2031.13	PASS	AC=2;AF=0.86;AN=2;DP=2926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2391,207,0:0,0,29,40
chr1	201299852	.	A	G	1523.27	PASS	AC=2;AF=0.775;AN=2;DP=3217;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2758,255,0:0,0,43,42
chr1	201299900	.	G	A	1853.56	PASS	AC=2;AF=0.775;AN=2;DP=3464;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2807,273,0:0,0,48,43
chr1	201300842	.	T	C	2029.79	PASS	AC=2;AF=0.92;AN=2;DP=3459;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3087,300,0:0,0,45,55
chr1	201300858	.	C	A	2123.53	PASS	AC=2;AF=0.989;AN=2;DP=3319;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2537,240,0:0,0,34,46
chr1	201301873	.	A	G	1760.62	PASS	AC=2;AF=0.849;AN=2;DP=4047;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2888,269,0:0,0,51,39
chr1	201301906	.	C	G	2392.59	PASS	AC=2;AF=0.852;AN=2;DP=4417;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3224,308,0:0,0,53,50
chr1	201331554	.	T	G	2300.46	PASS	AC=2;AF=0.841;AN=2;DP=5684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:4862,490,0:0,0,89,75
chr1	201331664	.	C	A	1793.77	PASS	AC=2;AF=0.736;AN=2;DP=3356;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2892,289,0:0,0,39,58
chr1	201334382	.	G	A	5598.03	PASS	AC=2;AF=0.841;AN=2;DP=7627;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:6785,683,0:0,0,97,132
chr1	201335899	.	C	T	747.99	PASS	AC=2;AF=0.989;AN=2;DP=1572;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1286,105,0:0,0,22,13
chr1	201336984	.	C	T	1048.34	PASS	AC=2;AF=0.629;AN=2;DP=2438;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,84:87:99:2485,229,0:0,3,32,52
chr1	201337170	.	A	G	546.6	PASS	AC=2;AF=0.852;AN=2;DP=1449;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1412,132,0:0,0,27,17
chr1	201338553	.	T	C	1068.41	PASS	AC=2;AF=0.841;AN=2;DP=1878;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1497,120,0:0,0,7,33
chr1	201338586	.	A	G	609.24	PASS	AC=2;AF=0.736;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1073,84,0:0,0,3,25
chr1	201338896	.	T	C	1425.84	PASS	AC=2;AF=0.73;AN=2;DP=3281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,97:99:99:2880,262,0:1,1,54,43
chr1	201339043	.	C	T	953.7	PASS	AC=2;AF=0.737;AN=2;DP=1800;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1547,147,0:0,0,15,34
chr1	201341175	.	CAGAAG	C	3385.05	PASS	AC=2;AF=0.736;AN=2;DP=4000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:5626,377,0:0,0,74,51
chr1	201341341	.	C	T	2441.19	PASS	AC=2;AF=0.841;AN=2;DP=3769;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2712,255,0:0,0,29,56
chr1	201353827	.	G	C	575.81	PASS	AC=2;AF=0.724;AN=2;DP=1110;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1361,129,0:0,0,29,14
chr1	201356428	.	C	A	1519.09	PASS	AC=2;AF=0.688;AN=2;DP=1564;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1692,162,0:0,0,18,36
chr1	201374653	.	C	T	424.04	PASS	AC=1;AF=0.661;AN=2;DP=1754;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:709,0,664:13,14,11,16
chr1	201374677	.	A	C	506.11	PASS	AC=1;AF=0.672;AN=2;DP=1840;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:511,0,729:13,13,10,11
chr1	201375370	.	TCCTCATCTGTAAATTTG	T	422.19	PASS	AC=1;AF=0.656;AN=2;DP=2190;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,32:84:99:1162,0,8836:20,32,16,16
chr1	201375658	.	A	G	745.27	PASS	AC=1;AF=0.672;AN=2;DP=1479;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,19:52:99:517,0,930:17,16,7,12
chr1	201375751	.	T	C	650.45	PASS	AC=1;AF=0.672;AN=2;DP=1233;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:421,0,604:11,11,9,8
chr1	201375813	.	A	G	965.67	PASS	AC=1;AF=0.672;AN=2;DP=1968;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:705,0,1012:19,19,16,12
chr1	201376007	.	G	C	894.03	PASS	AC=1;AF=0.643;AN=2;DP=2593;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,52:109:99:1323,0,1514:25,32,28,24
chr1	201376021	.	A	T	1182.94	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=3.695;FractionInformativeReads=0.981;MQ=60;MQRankSum=-0.834;QD=11.48;ReadPosRankSum=2.284;SOR=0.814;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1211,0,1295:25,29,26,21
chr1	201376261	.	A	G	492.97	PASS	AC=1;AF=0.672;AN=2;DP=1874;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:947,0,953:21,18,21,18
chr1	201377170	.	CA	C	54.1	PASS	AC=1;AF=0.65;AN=2;DP=85;FS=0;MQ=60;set=variant-variant5-variant12-variant15-variant16-variant24-variant27-variant32-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:71:71,0,96:5,0,4,0
chr1	201377438	.	A	G	588.95	PASS	AC=2;AF=0.898;AN=2;DP=2535;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2398,222,0:0,0,42,32
chr1	201377885	.	G	A	1490.81	PASS	AC=2;AF=0.716;AN=2;DP=1878;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3385,229,0:0,0,35,41
chr1	201377891	.	C	A	787.33	PASS	AC=1;AF=0.673;AN=2;DP=1280;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant33-variant34-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,30:75:99:716,0,1142:23,22,11,19
chr1	201377894	.	A	T	1524.62	PASS	AC=2;AF=0.716;AN=2;DP=1766;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:3353,226,0:0,0,34,40
chr1	201378488	.	G	A	49.73	PASS	AC=1;AF=0.6;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant12-variant15-variant18-variant19-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:153,0,154:1,4,4,2
chr1	201383616	.	A	G	255.29	PASS	AC=2;AF=0.898;AN=2;DP=1987;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,69:70:99:2231,200,0:1,0,47,22
chr1	201383643	.	A	C	586.49	PASS	AC=2;AF=0.898;AN=2;DP=3015;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3484,322,0:0,0,74,34
chr1	201390969	.	TCACACACACACACA	TCACACACACACACACA,TCACACACACA,TCACACACACACACACACA,T,TCACACACACACACACACACA,TCACACACACACACACACACACA,TCACACACACACA,TCACACACACACACACACACACACACA	37.9	PASS	AC=2,0,0,0,0,0,0,0;AF=0.235,0.118,0.235,0.029,0.088,0.029,0.059,0.059;AN=2;DP=212;FS=0;set=variant-variant3-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant27-variant31-variant35-variant36-variant37-variant43	GT:DP:GQ:SB	1/1:7:5:1,0,2,4
chr1	201391213	.	A	G	86.95	PASS	AC=1;AF=0.5;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant10-variant15-variant21-variant23-variant24-variant26-variant29-variant34-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:208,0,358:9,5,4,6
chr1	201398228	.	C	T	406.01	PASS	AC=1;AF=0.718;AN=2;DP=2135;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1266,0,865:19,19,25,24
chr1	201434740	.	G	A	1412.29	PASS	AC=1;AF=0.771;AN=2;DP=2415;MQ=60;set=variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,44:87:99:1238,0,1268:28,15,25,19
chr1	201435303	.	G	A	2429.11	PASS	AC=1;AF=0.5;AN=2;DP=691;MQ=60;set=variant7-variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:143,116:259:99:2778,0,3723:53,90,47,69
chr1	201437477	.	A	T	1109.5	PASS	AC=1;AF=0.5;AN=2;DP=2385;MQ=60;set=variant-variant3-variant5-variant8-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant34-variant35-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:75,74:149:99:1879,0,1929:45,30,45,29
chr1	201437999	.	C	T	802.65	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:41,31:72:99:831,0,1183:14,27,13,18
chr1	201453289	.	T	C	1131.55	PASS	AC=1;AF=0.898;AN=2;DP=1702;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:646,0,850:9,14,12,12
chr1	201453500	.	C	T	280.39	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.136;QD=3.79;ReadPosRankSum=-3.079;SOR=0.716;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:58,16:74:99:309,0,1563:26,32,7,9
chr1	201454359	.	C	T	1842.8	PASS	AC=1;AF=0.5;AN=2;DP=286;MQ=60;set=variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:85,77:162:99:1871,0,1949:45,40,40,37
chr1	201475727	.	A	C	2884.05	PASS	AC=1;AF=0.86;AN=2;DP=4842;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,39:85:99:1030,0,1144:25,21,27,12
chr1	201687406	.	G	A	408	PASS	AC=1;AF=0.54;AN=2;DP=1162;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant34-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:779,0,796:22,8,23,10
chr1	201687451	.	A	G	699.96	PASS	AC=2;AF=0.737;AN=2;DP=3534;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3760,348,0:0,0,75,41
chr1	201688515	.	T	A	294.99	PASS	AC=1;AF=0.54;AN=2;DP=698;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant34-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:432,0,649:16,7,12,4
chr1	201688832	.	T	C	87.21	PASS	AC=1;AF=0.56;AN=2;DP=700;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant34-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:333,0,631:9,16,5,9
chr1	201749520	.	G	C	1252.01	PASS	AC=1;AF=0.611;AN=2;DP=2796;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,68:143:99:1805,0,2040:44,31,39,29
chr1	201752429	.	A	C	280.59	PASS	AC=1;AF=0.673;AN=2;DP=584;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:292,0,465:12,2,8,1
chr1	201754410	.	CTT	CT,C	66.77	PASS	AC=1,1;AF=0.5,0.237;AN=2;DP=1700;set=variant-variant2-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-filterInvariant40-variant41-variant43	GT:DP:GQ:SB	2/1:51:99:2,0,31,18
chr1	201754444	.	G	C	864.65	PASS	AC=1;AF=0.5;AN=2;DP=378;MQ=60;set=variant15-variant17-variant19-variant20-variant24-variant38	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:893,0,932:20,18,19,18
chr1	201754528	.	T	C	1245.63	PASS	AC=1;AF=0.6;AN=2;DP=563;MQ=60;set=variant5-variant6-variant15-variant18-variant32	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1509,0,1334:27,23,28,29
chr1	201755469	.	C	G	814.31	PASS	AC=1;AF=0.583;AN=2;DP=1201;MQ=60;set=variant2-variant4-variant5-variant6-variant10-variant15-variant18-variant25-variant30-variant31-variant32-variant37	GT:AD:DP:GQ:PL:SB	0/1:68,38:106:99:735,0,1659:40,28,22,16
chr1	201763024	.	T	G	271.33	PASS	AC=1;AF=0.5;AN=2;DP=172;MQ=60;set=variant4-variant8-variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:40,13:53:99:365,0,3298:25,15,0,13
chr1	201763028	.	A	G	271.41	PASS	AC=1;AF=0.5;AN=2;DP=168;MQ=60;set=variant4-variant8-variant15-filterInvariant33	GT:AD:DP:GQ:PL:SB	0/1:35,14:49:99:396,0,3257:23,12,0,14
chr1	201763033	.	T	G	124.71	PASS	AC=1;AF=0.5;AN=2;DP=172;MQ=60;set=variant4-filterInvariant8-variant15-filterInvariant33	GT:AD:DP:GQ:PL:SB	0/1:35,14:49:99:405,0,3086:25,10,0,14
chr1	201763184	.	T	C	1627.21	PASS	AC=1;AF=0.743;AN=2;DP=6703;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,111:222:99:2382,0,2570:65,46,58,53
chr1	201763499	.	C	T	211.59	PASS	AC=1;AF=0.721;AN=2;DP=687;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:285,0,466:9,4,8,4
chr1	201763912	.	T	C	248.86	PASS	AC=1;AF=0.757;AN=2;DP=539;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:143,0,363:3,8,2,4
chr1	201772863	.	T	TG	1655.53	PASS	AC=2;AF=1;AN=2;DP=2972;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3203,289,0:0,0,34,62
chr1	201773707	.	TAA	TA,T	376.62	PASS	AC=1,0;AF=0.435,0.087;AN=2;DP=1641;set=variant2-variant4-filterInvariant6-variant7-variant8-variant10-variant11-filterInvariant12-variant15-variant18-variant19-variant20-variant22-filterInvariant23-variant26-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant41	GT:DP:GQ:SB	0/1:67:99:11,20,15,21
chr1	201788804	.	G	A	357.89	PASS	AC=1;AF=0.5;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:344,0,215:6,1,10,0
chr1	201790239	.	A	G	553.12	PASS	AC=1;AF=0.5;AN=2;DP=1635;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,21:63:99:543,0,1013:17,25,11,10
chr1	201790270	.	A	G	556.77	PASS	AC=1;AF=0.518;AN=2;DP=1596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,21:60:99:507,0,928:16,23,9,12
chr1	201790633	.	GACACACACACACACACACAC	GAC,GACACACACACACACACACACAC,GACACACACACACACACAC,GACACACACACACACAC,G,GACACACACACACACACACACACAC,GACACAC	241.33	PASS	AC=0,0,0,1,1,0,0;AF=0.274,0.095,0.214,0.048,0.202,0.012,0.024;AN=2;DP=821;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	5/4:17:99:0,0,9,8
chr1	201790826	.	T	C	233.89	PASS	AC=1;AF=0.652;AN=2;DP=944;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:498,0,476:9,8,6,9
chr1	201792306	.	T	C	399.06	PASS	AC=1;AF=0.5;AN=2;DP=1185;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,16:46:99:314,0,796:17,13,6,10
chr1	201792498	.	G	GTA	379.7	PASS	AC=1;AF=0.618;AN=2;DP=789;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:362,0,323:5,5,5,8
chr1	201793440	.	C	G	438.36	PASS	AC=1;AF=0.636;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:637,0,519:6,12,12,11
chr1	201793764	.	G	A	431.36	PASS	AC=2;AF=1;AN=2;DP=1284;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1499,132,0:0,0,25,19
chr1	201794455	.	TAA	TA,T,TAAA	80.79	PASS	AC=0,0,1;AF=0.321,0.013,0.167;AN=2;DP=2502;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant19-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:47:99:13,13,7,14
chr1	201816639	.	ATCTTTT	A	3698.08	PASS	AC=1;AF=0.559;AN=2;DP=1348;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1595,0,3161:34,22,31,11
chr1	201816910	.	C	CTA	1242.88	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=4.435;FractionInformativeReads=0.907;MQ=60;MQRankSum=-0.586;QD=23.02;ReadPosRankSum=1.269;SOR=0.287;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,33:49:99:1280,0,549:4,12,13,20
chr1	201821443	.	T	C	1019.35	PASS	AC=1;AF=0.556;AN=2;DP=675;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:636,0,798:9,20,6,18
chr1	201824390	.	G	A	1397.91	PASS	AC=1;AF=0.534;AN=2;DP=1805;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:847,0,706:11,14,13,19
chr1	201826340	.	C	T	2978.07	PASS	AC=1;AF=0.556;AN=2;DP=2134;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,59:145:99:1329,0,2125:44,42,30,29
chr1	201826482	.	C	T	1310.53	PASS	AC=1;AF=0.556;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:487,0,888:7,22,6,13
chr1	201832451	.	T	G	914.82	PASS	AC=2;AF=1;AN=2;DP=1298;FS=0;FractionInformativeReads=1;MQRankSum=1.639;ReadPosRankSum=1.264;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1216,99,0:0,0,25,8
chr1	201832864	.	G	C	2524.91	PASS	AC=1;AF=0.556;AN=2;DP=1212;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,47:76:99:1295,0,730:10,19,16,31
chr1	201837934	.	CGT	C	1370.41	PASS	AC=2;AF=0.942;AN=2;DP=5570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,146:148:99:4821,371,0:1,1,72,74
chr1	201838107	.	G	A	1828.1	PASS	AC=1;AF=0.559;AN=2;DP=767;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:756,0,835:9,21,8,20
chr1	201840059	.	GTTATT	G	1518.88	PASS	AC=2;AF=0.989;AN=2;DP=2377;FS=0;MQ=60;MQRankSum=1.89;ReadPosRankSum=-0.095;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2567,173,0:0,0,22,35
chr1	201840464	.	T	C	2592.57	PASS	AC=2;AF=1;AN=2;DP=3209;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2652,251,0:0,0,31,53
chr1	201844128	.	G	A	1707.15	PASS	AC=2;AF=1;AN=2;DP=2606;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2709,251,0:0,0,36,48
chr1	201845575	.	C	A	1635.6	PASS	AC=1;AF=0.559;AN=2;DP=966;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:1065,0,751:17,17,24,10
chr1	201845882	.	GA	GAA,GAAA,G	1242.12	PASS	AC=1,0,0;AF=0.535,0.035,0.012;AN=2;DP=3072;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:61:99:11,20,16,14
chr1	201846615	.	TCACACACACACA	T,TCACACACACACACA,TCACACACACACACACA,TCACACACACA	2734.61	PASS	AC=2,0,0,0;AF=0.622,0.024,0.122,0.024;AN=2;DP=1838;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:68:99:0,0,40,28
chr1	201849926	.	A	G	545.49	PASS	AC=1;AF=0.5;AN=2;DP=753;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:733,0,446:7,9,12,10
chr1	201850057	.	T	C	3412.35	PASS	AC=1;AF=0.556;AN=2;DP=1813;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,61:118:99:1450,0,1307:30,27,37,24
chr1	201850391	.	C	CACTT	2265.52	PASS	AC=1;AF=0.81;AN=2;DP=1944;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:881,0,1769:14,15,10,12
chr1	201851572	.	AAAC	A	247.15	PASS	AC=1;AF=0.5;AN=2;DP=332;set=variant15-variant21-variant25-filterInvariant27-variant28-variant33-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:49,19:68:99:284,0,1461:35,14,14,5
chr1	201852299	.	TC	TCCC,TCC,T	1327.23	PASS	AC=0,1,0;AF=0.238,0.536,0.012;AN=2;DP=3542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:69:99:15,31,9,14
chr1	201853165	.	G	T	875.62	PASS	AC=1;AF=0.534;AN=2;DP=1299;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:565,0,715:11,19,13,14
chr1	201860626	.	A	G	1008.71	PASS	AC=1;AF=0.821;AN=2;DP=3138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1181,0,1112:23,24,20,27
chr1	201861016	.	C	G	3670.11	PASS	AC=1;AF=0.532;AN=2;DP=6274;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,118:259:99:2872,0,3410:64,77,56,62
chr1	201865632	.	C	T	1702.47	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.096;QD=14.07;ReadPosRankSum=2.498;SOR=0.637;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:56,65:121:99:1731,0,1425:31,25,35,30
chr1	201865763	.	A	G	3384.55	PASS	AC=1;AF=0.821;AN=2;DP=5323;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,73:125:99:1838,0,1119:21,31,32,41
chr1	201866377	.	G	A	810.1	PASS	AC=1;AF=0.5;AN=2;DP=346;MQ=60;set=variant15-variant17-variant19-variant24-variant38	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:838,0,881:16,15,13,16
chr1	201868524	.	A	G	302.71	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=354;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:66,21:87:99:336,0,3586:46,20,0,21
chr1	201868530	.	A	G	293.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=518;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:57,27:84:99:682,0,1117:46,11,0,27
chr1	201868536	.	T	G	312.56	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=184;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,21:81:99:341,0,3497:45,15,0,21
chr1	201868539	.	T	G	183.08	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=553;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:61,27:88:99:528,0,2424:46,15,0,27
chr1	201869257	.	G	A	6035.66	PASS	AC=1;AF=0.559;AN=2;DP=3065;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,116:214:99:3022,0,2597:45,53,56,60
chr1	201915658	.	A	C	1525.98	PASS	AC=2;AF=1;AN=2;DP=2089;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.073;ReadPosRankSum=1.098;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1613,147,0:0,0,19,30
chr1	201915718	.	C	G	998.97	PASS	AC=2;AF=1;AN=2;DP=1429;FS=0;MQ=60;MQRankSum=-0.788;ReadPosRankSum=-0.788;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1061,93,0:0,0,10,21
chr1	201926403	.	T	G	2628.11	PASS	AC=1;AF=0.583;AN=2;DP=1071;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant15-variant18-variant19-variant23-variant28-variant29-variant30-variant32-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,35:107:99:853,0,1998:44,28,23,12
chr1	201932615	.	TTG	T	1264.51	PASS	AC=1;AF=0.591;AN=2;DP=193;MQ=60;set=variant2-variant6-variant15-variant18-variant19-variant23-variant28-variant29-variant30-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:296,0,470:10,2,5,3
chr1	201934578	.	G	A	1285.51	PASS	AC=1;AF=0.583;AN=2;DP=700;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant15-variant18-variant19-variant23-variant28-variant29-variant30-variant32-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:1014,0,705:18,11,23,14
chr1	201938482	.	C	T	79.91	PASS	AC=1;AF=0.717;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant15-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:148,0,159:4,0,4,0
chr1	201938995	.	C	T	6504.36	PASS	AC=1;AF=0.621;AN=2;DP=12348;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:249,296:545:99:7254,0,6175:135,114,143,153
chr1	201939752	.	C	T	2573.25	PASS	AC=1;AF=0.586;AN=2;DP=5054;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,117:215:99:2975,0,2465:36,62,43,74
chr1	201939785	.	A	T	1910.31	PASS	AC=1;AF=0.586;AN=2;DP=3209;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,70:132:99:1833,0,1655:20,42,25,45
chr1	201952294	.	C	G	679.27	PASS	AC=1;AF=0.6;AN=2;DP=1240;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:363,0,1023:7,11,3,7
chr1	201952310	.	T	G	559.49	PASS	AC=1;AF=0.6;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:316,0,984:7,11,4,5
chr1	201952440	.	C	CCTT	727.34	PASS	AC=1;AF=0.6;AN=2;DP=1928;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,18:59:99:632,0,1951:26,15,13,5
chr1	201952574	.	T	C	1917.18	PASS	AC=1;AF=0.629;AN=2;DP=5050;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,85:186:99:2033,0,2645:55,46,46,39
chr1	201952755	.	T	A	697.79	PASS	AC=1;AF=0.6;AN=2;DP=2524;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,52:98:99:1338,0,1138:16,30,20,32
chr1	201966894	.	G	GTTT,GTTTT,GTT,GT,GTTTTT	48.39	PASS	AC=0,2,0,0,0;AF=0.258,0.403,0.177,0.032,0.032;AN=2;DP=424;set=variant3-variant4-variant6-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:12:28:1,0,3,8
chr1	201969082	.	G	A	659.53	PASS	AC=2;AF=0.7;AN=2;DP=2275;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3331,309,0:0,0,67,36
chr1	201970562	.	T	C	8545.54	PASS	AC=2;AF=1;AN=2;DP=12138;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,280:280:99:8543,839,0:0,0,127,153
chr1	201970748	.	G	A	848.72	PASS	AC=2;AF=0.717;AN=2;DP=2520;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3427,303,0:0,0,54,47
chr1	201977600	.	C	A	110.05	PASS	AC=1;AF=0.609;AN=2;DP=556;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:149,0,136:6,2,6,4
chr1	201977827	.	G	T	810.37	PASS	AC=1;AF=0.714;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:359,0,219:4,5,4,9
chr1	201977860	.	GT	G	279.49	PASS	AC=1;AF=0.732;AN=2;DP=407;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:112,0,181:2,3,1,2
chr1	201977867	.	T	G	277.59	PASS	AC=1;AF=0.639;AN=2;DP=238;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant21-variant22-variant24-variant25-variant33-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:112,0,229:1,3,1,2
chr1	201978197	.	G	A	118.02	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant11-variant12-variant14-variant15-variant16-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,122:2,1,1,1
chr1	201980119	.	C	G	1571.12	PASS	AC=1;AF=0.7;AN=2;DP=4140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,61:143:99:1531,0,2226:40,42,30,31
chr1	201981005	.	CAA	CA,CAAA,C	89.72	PASS	AC=1,0,0;AF=0.346,0.135,0.019;AN=2;DP=452;set=variant2-filterInvariant4-variant5-variant8-filterInvariant10-variant12-variant13-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:30:82:21,2,7,0
chr1	201983242	.	C	T	61.77	PASS	AC=1;AF=0.596;AN=2;DP=639;MQ=60;set=variant-variant3-variant4-variant8-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:560,0,491:3,13,5,13
chr1	201985648	.	GAA	GA,G,GAAA	3965.58	PASS	AC=2,0,0;AF=0.841,0.091,0.011;AN=2;DP=12542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:317:99:12,14,165,126
chr1	201985731	.	G	A	2872.3	PASS	AC=2;AF=0.786;AN=2;DP=12185;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,357:358:99:10842,1061,0:0,1,144,213
chr1	202092046	.	C	T	2472.31	PASS	AC=2;AF=0.833;AN=2;DP=3176;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3125,273,0:0,0,52,39
chr1	202092360	.	G	A	3144.42	PASS	AC=2;AF=0.866;AN=2;DP=5532;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4644,453,0:0,0,80,72
chr1	202092415	.	A	G	3381.3	PASS	AC=2;AF=0.866;AN=2;DP=6672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:5793,588,0:0,0,104,93
chr1	202092580	.	T	C	4095.49	PASS	AC=2;AF=0.866;AN=2;DP=7361;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6761,642,0:0,0,100,114
chr1	202096815	.	G	A	2209.63	PASS	AC=2;AF=0.808;AN=2;DP=4240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3653,362,0:0,0,69,52
chr1	202098078	.	C	T	867.38	PASS	AC=1;AF=0.614;AN=2;DP=1203;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant22-variant23-variant24-variant27-variant30-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:641,0,578:7,14,10,15
chr1	202103802	.	G	A	1544.95	PASS	AC=1;AF=0.646;AN=2;DP=581;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:485,0,553:1,13,1,13
chr1	202107422	.	AACACACAC	AAC,AACAC,AACACACACAC,AACACAC,A,AACACACACACACAC	961.24	PASS	AC=1,0,0,0,0,0;AF=0.59,0.077,0.013,0.064,0.051,0.013;AN=2;DP=1135;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:23:99:7,2,11,3
chr1	202113835	.	T	G	2382.38	PASS	AC=1;AF=0.792;AN=2;DP=2476;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,38:83:99:1156,0,1487:6,39,9,29
chr1	202116238	.	G	A	2088.91	PASS	AC=1;AF=0.643;AN=2;DP=1696;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,58:92:99:1429,0,813:16,18,32,26
chr1	202116957	.	T	A	1515.98	PASS	AC=1;AF=0.636;AN=2;DP=1797;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1185,0,1305:24,29,22,28
chr1	202117975	.	CTT	CTTTT,CTTTTT,C,CTTT,CTTTTTT,CTTTTTTT	198.78	PASS	AC=1,0,0,0,0,0;AF=0.22,0.22,0.04,0.06,0.1,0.02;AN=2;DP=760;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-filterInvariant15-variant19-variant21-variant24-variant25-variant27-variant28-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:9:78:0,5,1,3
chr1	202119205	.	C	A	307.36	PASS	AC=1;AF=0.675;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:147,0,269:7,0,4,0
chr1	202122783	.	C	A	550.99	PASS	AC=1;AF=0.65;AN=2;DP=372;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:411,0,200:6,0,10,6
chr1	202129826	.	T	C	2355.42	PASS	AC=2;AF=0.65;AN=2;DP=3246;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3536,330,0:0,0,65,45
chr1	202129895	.	G	A	966.64	PASS	AC=1;AF=0.526;AN=2;DP=2667;MQ=60;set=variant-variant2-variant3-variant6-variant12-variant15-variant16-variant20-variant23-variant25-variant27-variant29-variant30-variant33-variant34-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,100:167:99:2322,0,1486:41,26,54,46
chr1	202130166	.	G	A	852.84	PASS	AC=2;AF=0.725;AN=2;DP=2341;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1734,170,0:0,0,28,31
chr1	202130754	.	T	C	1289.39	PASS	AC=2;AF=0.738;AN=2;DP=2816;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2368,219,0:0,0,32,41
chr1	202155543	.	A	C	5684.56	PASS	AC=2;AF=0.909;AN=2;DP=9324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,261:262:99:7705,778,0:1,0,136,125
chr1	202156135	.	C	CCCTCGCTCCTCGCTCCTCGCTCCTCGCT,CCCTCGCT,CCCTCGCTCCTCGCTCCTCGCT,CCCTCGCTCCTCGCT,CCCTCGCTCCTCGCTCCTCGCTCCTCGCTCCTCGCT	785.79	PASS	AC=2,0,0,0,0;AF=0.159,0.511,0.125,0.057,0.023;AN=2;DP=2824;set=Intersection	GT:DP:GQ:SB	1/1:33:98:0,0,14,19
chr1	202156482	.	G	A	2307.92	PASS	AC=2;AF=0.886;AN=2;DP=4825;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4248,427,0:0,0,85,58
chr1	202156628	.	A	C	2701.97	PASS	AC=2;AF=0.898;AN=2;DP=4743;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4383,411,0:0,0,49,88
chr1	202163063	.	T	C	2031.84	PASS	AC=2;AF=0.886;AN=2;DP=3121;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2578,258,0:0,0,37,49
chr1	202163364	.	C	G	276.52	PASS	AC=2;AF=0.875;AN=2;DP=1101;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:785,77,0:0,0,14,12
chr1	202163516	.	C	A	4017.32	PASS	AC=2;AF=0.886;AN=2;DP=5241;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4186,374,0:0,0,86,39
chr1	202194441	.	G	C	271.37	PASS	AC=2;AF=0.673;AN=2;DP=796;MQ=60;set=variant-variant3-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1399,120,0:0,0,32,8
chr1	202194508	.	AG	A	1902.47	PASS	AC=1;AF=0.5;AN=2;DP=623;MQ=60;set=variant15-variant16-variant23-variant33-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,58:109:99:1940,0,1662:29,22,35,23
chr1	202196931	.	G	A	2053.34	PASS	AC=2;AF=0.83;AN=2;DP=2683;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2406,238,0:0,0,51,29
chr1	202266547	.	C	T	3287.08	PASS	AC=1;AF=0.718;AN=2;DP=5766;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,98:182:99:2392,0,2045:50,34,56,42
chr1	202266607	.	C	T	4279.39	PASS	AC=1;AF=0.672;AN=2;DP=6040;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:113,112:225:99:2656,0,2684:55,58,51,61
chr1	202269785	.	GA	G,GAA	34.71	PASS	AC=0,1;AF=0.2,0.3;AN=2;DP=90;set=variant2-variant11-variant15-variant31-filterInvariant38	GT:DP:GQ:SB	0/2:15:70:7,4,2,2
chr1	202274936	.	T	C	4854.85	PASS	AC=1;AF=0.672;AN=2;DP=5400;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,75:166:99:1715,0,2172:48,43,43,32
chr1	202276494	.	C	T	947.45	PASS	AC=1;AF=0.672;AN=2;DP=2399;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,37:83:99:1063,0,1162:19,27,15,22
chr1	202283667	.	A	G	984.11	PASS	AC=1;AF=0.641;AN=2;DP=1266;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,20:58:99:562,0,1122:25,13,15,5
chr1	202287206	.	T	C	4106.87	PASS	AC=1;AF=0.705;AN=2;DP=7427;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,91:210:99:2093,0,2767:58,61,38,53
chr1	202287537	.	G	A	5534.84	PASS	AC=1;AF=0.641;AN=2;DP=5787;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,139:242:99:3536,0,2604:62,41,79,60
chr1	202287813	.	T	C	7469.02	PASS	AC=1;AF=0.705;AN=2;DP=10725;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,163:311:99:4253,0,4058:69,79,79,84
chr1	202288462	.	C	A	2219.92	PASS	AC=1;AF=0.705;AN=2;DP=2927;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,44:75:99:1295,0,994:11,20,15,29
chr1	202304868	.	T	C	1650.67	PASS	AC=1;AF=0.592;AN=2;DP=4581;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,55:115:99:1387,0,1422:30,30,24,31
chr1	202318316	.	A	C	1008.46	PASS	AC=1;AF=0.574;AN=2;DP=3898;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,56:132:99:1477,0,1946:27,49,19,37
chr1	202386075	.	T	C	1783.26	PASS	AC=2;AF=0.989;AN=2;DP=3673;MQRankSum=-1.183;ReadPosRankSum=-0.055;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3616,342,0:0,0,41,73
chr1	202457784	.	T	A	466.49	PASS	AC=1;AF=0.574;AN=2;DP=1534;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:654,0,840:11,19,10,16
chr1	202464280	.	G	A	407.15	PASS	AC=1;AF=0.571;AN=2;DP=511;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:403,0,169:5,0,11,0
chr1	202531741	.	C	T	239.91	PASS	AC=1;AF=0.571;AN=2;DP=793;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:376,0,378:10,5,10,5
chr1	202536848	.	C	T	1117.12	PASS	AC=1;AF=0.574;AN=2;DP=2494;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1047,0,1188:27,23,26,17
chr1	202550272	.	G	A	754.51	PASS	AC=1;AF=0.7;AN=2;DP=2931;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,30:78:99:628,0,1234:21,27,13,17
chr1	202550547	.	G	A	465.78	PASS	AC=1;AF=0.679;AN=2;DP=2085;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:643,0,983:14,22,12,15
chr1	202551071	.	A	G	1337.61	PASS	AC=1;AF=0.697;AN=2;DP=3400;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,52:100:99:1441,0,1383:18,30,20,32
chr1	202551938	.	G	A	45.14	PASS	AC=1;AF=0.868;AN=2;DP=70;FS=0;FractionInformativeReads=1;set=variant-variant5-variant9-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant25-variant26-variant28-variant29-variant31-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:37:78,0,37:1,1,2,0
chr1	202552100	.	G	A	2624.05	PASS	AC=1;AF=0.679;AN=2;DP=6429;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,120:235:99:3073,0,3032:81,34,80,40
chr1	202552302	.	T	C	8258.28	PASS	AC=2;AF=1;AN=2;DP=9611;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:7718,733,0:0,0,86,159
chr1	202552839	.	T	C	674.71	PASS	AC=1;AF=0.692;AN=2;DP=2081;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:950,0,1068:19,22,15,18
chr1	202556632	.	C	CTGTT	628.22	PASS	AC=1;AF=0.689;AN=2;DP=1902;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:1239,0,1057:8,13,17,13
chr1	202557017	.	C	T	667.91	PASS	AC=1;AF=0.689;AN=2;DP=2581;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1133,0,1256:23,22,21,23
chr1	202560412	.	T	C	1233.11	PASS	AC=1;AF=0.688;AN=2;DP=4566;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,81:136:99:2204,0,1210:27,28,37,44
chr1	202560529	.	G	T	1115.37	PASS	AC=1;AF=0.5;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant8-variant11-variant15-variant24-variant26-variant30	GT:AD:DP:GQ:PL:SB	0/1:57,47:104:99:1080,0,1503:29,28,25,22
chr1	202560658	.	A	G	1422.49	PASS	AC=1;AF=0.692;AN=2;DP=5192;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,81:155:99:2121,0,1791:42,32,43,38
chr1	202560681	.	T	G	1611.18	PASS	AC=1;AF=0.692;AN=2;DP=6135;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,95:185:99:2304,0,2245:51,39,49,46
chr1	202562427	.	G	A	1291.05	PASS	AC=1;AF=0.652;AN=2;DP=2934;MQ=60;set=variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,45:107:99:1097,0,1543:31,31,25,20
chr1	202563829	.	TAC	TACAC,TACACACACACACACACAC,TACACACACACACAC,TACACACACACACACACACACAC,T,TACACACACACACACACACAC,TACACACACAC,TACACACACACACACACACACACACACAC,TACACACACACACACAC,TACACACACACAC,TACACACACACACACACACACACAC,TACACACAC	498.81	PASS	AC=1,1,0,0,0,0,0,0,0,0,0,0;AF=0.192,0.244,0.064,0.064,0.013,0.128,0.026,0.013,0.051,0.026,0.013,0.026;AN=2;DP=1042;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:32:99:0,1,15,16
chr1	202563966	.	C	T	190.6	PASS	AC=1;AF=0.6;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant16-variant23-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:332,0,299:5,5,5,8
chr1	202564040	.	C	A	109.62	PASS	AC=1;AF=0.6;AN=2;DP=103;MQ=60;set=variant12-variant15-variant16-variant23-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:282,0,450:9,5,5,6
chr1	202564311	.	C	G	434.8	PASS	AC=1;AF=0.5;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant16-variant23	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:752,0,639:14,13,15,15
chr1	202564330	.	A	T	253.35	PASS	AC=1;AF=0.705;AN=2;DP=2027;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:794,0,530:12,11,16,16
chr1	202565426	.	C	T	69.6	PASS	AC=1;AF=0.625;AN=2;DP=79;set=variant12-variant15-variant16-variant23	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:110,0,225:9,4,3,2
chr1	202565428	.	CACACACAT	C	241.78	PASS	AC=1;AF=0.667;AN=2;DP=111;set=variant3-variant12-variant15-variant16-variant23-variant32	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:106,0,413:9,5,3,2
chr1	202565436	.	T	C,TACACACACAC	489.76	PASS	AC=1,0;AF=0.594,0.125;AN=2;DP=288;set=variant13-variant15-filterInvariant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant3-variant31-variant34-variant35-variant37	GT:DP:GQ:SB	0/1:17:99:4,5,6,2
chr1	202565747	.	AAAAC	A	925.89	PASS	AC=1;AF=0.6;AN=2;DP=259;MQ=60;set=variant12-variant15-variant16-variant23-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:1062,0,1321:12,12,15,12
chr1	202565948	.	G	A	960.36	PASS	AC=1;AF=0.589;AN=2;DP=4235;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant26-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,74:171:99:1673,0,2394:51,46,38,36
chr1	202569831	.	G	A	410.06	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant16-variant23	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:652,0,327:5,8,2,17
chr1	202572105	.	GCC	G	250.95	PASS	AC=1;AF=0.692;AN=2;DP=2567;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:1357,0,1336:12,27,17,23
chr1	202703053	.	G	A	1764.81	PASS	AC=2;AF=0.83;AN=2;DP=3060;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2590,252,0:0,0,31,53
chr1	202705455	.	G	C	2324.42	PASS	AC=2;AF=0.798;AN=2;DP=3676;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2698,263,0:0,0,40,48
chr1	202715244	.	G	GA	1197.03	PASS	AC=2;AF=0.798;AN=2;DP=1894;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1509,156,0:0,0,29,23
chr1	202715284	.	G	A	1665.83	PASS	AC=2;AF=0.798;AN=2;DP=2870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2435,239,0:0,0,48,32
chr1	202718028	.	A	G	1038.73	PASS	AC=2;AF=0.788;AN=2;DP=785;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1246,90,0:0,0,29,1
chr1	202718202	.	G	A	4302.04	PASS	AC=2;AF=0.788;AN=2;DP=6174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,188:190:99:5587,518,0:1,1,83,105
chr1	202722277	.	G	A	922.32	PASS	AC=2;AF=0.788;AN=2;DP=1365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1347,126,0:0,0,12,30
chr1	202722348	.	A	G	201.22	PASS	AC=2;AF=0.857;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr1	202731986	.	C	CCTCAA	491.94	PASS	AC=2;AF=0.825;AN=2;DP=504;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:314,21,0:0,0,0,7
chr1	202733238	.	C	T	2893.82	PASS	AC=2;AF=0.798;AN=2;DP=4445;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4468,446,0:0,0,67,82
chr1	202735751	.	T	C	6914.51	PASS	AC=2;AF=0.788;AN=2;DP=8789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,277:277:99:7728,828,0:0,0,139,138
chr1	202743892	.	T	C	606.14	PASS	AC=1;AF=0.533;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:526,0,582:6,16,4,15
chr1	202778261	.	G	A	1866.25	PASS	AC=2;AF=0.852;AN=2;DP=2474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2497,198,0:0,0,28,38
chr1	202795007	.	G	A	2233.19	PASS	AC=1;AF=0.5;AN=2;DP=213;FS=0.508;FractionInformativeReads=1;MQ=60;MQRankSum=-1.15;QD=10.48;ReadPosRankSum=-0.975;SOR=0.739;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:127,86:213:99:2261,0,3281:65,62,45,41
chr1	202827191	.	G	A	1015.24	PASS	AC=1;AF=0.635;AN=2;DP=1394;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,46:69:99:1228,0,520:15,8,27,19
chr1	202827398	.	A	G	912.31	PASS	AC=1;AF=0.635;AN=2;DP=1149;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,41:64:99:1080,0,520:9,14,13,28
chr1	202848587	.	G	A	207.7	PASS	AC=1;AF=0.769;AN=2;DP=1423;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:851,0,441:12,10,19,11
chr1	202848683	.	T	C	635.31	PASS	AC=1;AF=0.5;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant23-variant33	GT:AD:DP:GQ:PL:SB	0/1:34,21:55:99:523,0,946:16,18,12,9
chr1	202849606	.	C	T	6007.8	PASS	AC=2;AF=0.989;AN=2;DP=7549;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5476,562,0:0,0,93,95
chr1	202849723	.	G	A	1277.54	PASS	AC=1;AF=0.769;AN=2;DP=3635;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,47:99:99:1219,0,1689:14,38,19,28
chr1	202849770	.	T	C	935.06	PASS	AC=1;AF=0.769;AN=2;DP=2008;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:765,0,916:11,18,10,18
chr1	202861211	.	G	GAA,GA	547.4	PASS	AC=1,1;AF=0.727,0.159;AN=2;DP=1235;set=Intersection	GT:DP:GQ:SB	2/1:32:99:0,2,9,21
chr1	202878454	.	T	A	391.47	PASS	AC=1;AF=0.75;AN=2;DP=519;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:402,0,411:2,11,1,12
chr1	202887295	.	G	A	1205.95	PASS	AC=1;AF=0.75;AN=2;DP=3157;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,49:102:99:1200,0,1350:26,27,26,23
chr1	202889207	.	T	C	90.3	PASS	AC=2;AF=1;AN=2;DP=300;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:176,15,0:0,0,1,4
chr1	202897431	.	A	G	729.62	PASS	AC=1;AF=0.75;AN=2;DP=463;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:211,0,321:7,2,6,0
chr1	202920300	.	A	C	1186.77	PASS	AC=1;AF=0.622;AN=2;DP=1648;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:1411,0,1619:12,18,11,25
chr1	202920304	.	T	C	1186.77	PASS	AC=1;AF=0.618;AN=2;DP=1629;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:1411,0,1619:12,18,11,24
chr1	202927501	.	T	C	599.14	PASS	AC=2;AF=0.92;AN=2;DP=1137;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1165,81,0:0,0,12,15
chr1	202927507	.	C	T	160.64	PASS	AC=1;AF=0.581;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:487,0,256:3,7,9,11
chr1	202931839	.	G	A	1547.38	PASS	AC=1;AF=0.583;AN=2;DP=3533;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,69:155:99:1603,0,2201:33,53,24,45
chr1	202931958	.	G	A	470.94	PASS	AC=1;AF=0.6;AN=2;DP=1168;MQ=60;set=variant-variant6-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant31-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:660,0,700:9,14,14,8
chr1	202931998	.	C	A	635.33	PASS	AC=1;AF=0.578;AN=2;DP=2175;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,32:64:99:892,0,906:20,12,22,10
chr1	202933657	.	T	A	550.67	PASS	AC=1;AF=0.589;AN=2;DP=1619;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:864,0,975:19,16,18,14
chr1	202933992	.	G	C	690.92	PASS	AC=1;AF=0.578;AN=2;DP=1344;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,17:49:99:454,0,939:8,24,4,13
chr1	202934761	.	C	CT	69.19	PASS	AC=1;AF=0.5;AN=2;DP=438;set=filterInvariant3-variant4-variant6-variant8-filterInvariant14-filterInvariant15-filterInvariant16-variant25-filterInvariant28-variant32-filterInvariant33-variant34-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:17,6:23:80:80,0,452:10,7,2,4
chr1	202934764	.	TC	T	242.69	PASS	AC=1;AF=0.515;AN=2;DP=1053;set=variant-variant2-filterInvariant5-variant7-variant8-variant9-variant10-filterInvariant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:151,0,387:9,6,4,5
chr1	202934765	.	C	T	122.34	PASS	AC=1;AF=0.583;AN=2;DP=882;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-filterInvariant21-variant23-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:325,0,356:5,7,8,4
chr1	202936456	.	G	C	192.99	PASS	AC=1;AF=0.639;AN=2;DP=197;MQ=60;set=variant-variant6-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant31-variant35-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:71:167,0,71:1,2,0,5
chr1	202956340	.	T	G	2858.66	PASS	AC=1;AF=0.646;AN=2;DP=2170;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant18-variant20-variant23-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,56:93:99:1592,0,835:17,20,20,36
chr1	202990110	.	CTTTT	CTTT,CT,CTTTTT,C,CTT	51.61	PASS	AC=1,0,0,0,0;AF=0.195,0.341,0.037,0.012,0.012;AN=2;DP=3048;set=filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-filterInvariant15-filterInvariant16-variant17-variant18-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:56:99:12,30,2,12
chr1	202990155	.	CT	CTT,C	43.74	PASS	AC=0,1;AF=0.333,0.2;AN=2;DP=425;set=filterInvariant3-variant6-variant8-filterInvariant9-variant10-filterInvariant15-variant19-filterInvariant22-variant30-filterInvariant31-variant35-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:19:98:0,10,1,8
chr1	202993899	.	G	T	216.33	PASS	AC=1;AF=0.536;AN=2;DP=410;MQ=60;set=variant-variant6-variant9-variant12-variant15-variant16-variant19-variant20-variant22-variant28-variant29-variant31-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:441,0,417:4,10,8,9
chr1	203004367	.	C	T	2054.84	PASS	AC=1;AF=0.563;AN=2;DP=2041;MQ=60;set=variant2-variant5-variant6-variant8-variant15-variant16-variant20-variant24-variant26-variant28-variant31-variant33-variant34-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:75,72:147:99:1681,0,1950:45,30,36,36
chr1	203004627	.	A	AC	1450.99	PASS	AC=2;AF=1;AN=2;DP=2819;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2355,225,0:0,0,46,29
chr1	203004930	.	T	TAGC	116.46	PASS	AC=1;AF=0.577;AN=2;DP=813;set=variant-variant2-variant5-variant6-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:624,0,579:2,13,4,13
chr1	203004980	.	CT	C	225.09	PASS	AC=2;AF=0.989;AN=2;DP=534;FS=0;MQ=60;MQRankSum=-0.053;ReadPosRankSum=1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:446,36,0:0,0,1,11
chr1	203006098	.	A	G	330.12	PASS	AC=1;AF=0.56;AN=2;DP=554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant20-variant24-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:722,0,447:13,0,18,1
chr1	203006179	.	G	A	1542.52	PASS	AC=1;AF=0.565;AN=2;DP=2472;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,48:115:99:1200,0,1701:43,24,30,18
chr1	203006243	.	A	G	7004.81	PASS	AC=2;AF=0.989;AN=2;DP=8799;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6408,653,0:0,0,112,106
chr1	203008174	.	G	C	2136.06	PASS	AC=2;AF=1;AN=2;DP=5182;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3171,314,0:0,0,47,58
chr1	203008286	.	C	G	270.6	PASS	AC=1;AF=0.725;AN=2;DP=2327;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:828,0,732:15,15,13,17
chr1	203012705	.	C	G	748.7	PASS	AC=1;AF=0.639;AN=2;DP=3741;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,71:146:99:1728,0,1940:28,47,30,41
chr1	203012906	.	G	A	498.49	PASS	AC=2;AF=0.791;AN=2;DP=2424;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2523,230,0:0,0,45,32
chr1	203014196	.	T	C	259.59	PASS	AC=1;AF=0.703;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,201:5,0,2,1
chr1	203023122	.	A	C	3358.27	PASS	AC=1;AF=0.6;AN=2;DP=3969;MQ=60;set=variant3-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant28-variant30-variant32-variant33-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:100,102:202:99:2426,0,2226:42,58,44,58
chr1	203023240	.	G	GGC	1589.4	PASS	AC=1;AF=0.6;AN=2;DP=1726;MQ=60;set=variant3-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant28-variant30-variant32-variant33-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,37:80:99:1392,0,1859:15,28,16,21
chr1	203025209	.	G	C	1174.62	PASS	AC=1;AF=0.55;AN=2;DP=1556;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant28-variant30-variant32-variant33-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,65:102:99:1657,0,916:18,19,33,32
chr1	203028711	.	C	G	148.92	PASS	AC=1;AF=0.736;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:540,0,461:12,2,15,1
chr1	203030685	.	T	C	963.7	PASS	AC=1;AF=0.75;AN=2;DP=2312;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:580,0,805:19,12,13,10
chr1	203032922	.	C	T	865.31	PASS	AC=1;AF=0.677;AN=2;DP=3176;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,61:115:99:1486,0,1275:29,25,35,26
chr1	203036757	.	T	C	1004.72	PASS	AC=1;AF=0.743;AN=2;DP=3296;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,66:116:99:1737,0,1298:31,19,39,27
chr1	203040673	.	A	G	1028.4	PASS	AC=2;AF=1;AN=2;DP=1097;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:967,81,0:0,0,21,6
chr1	203040740	.	T	C	615.58	PASS	AC=1;AF=0.725;AN=2;DP=2838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,33:83:99:875,0,1481:37,13,21,12
chr1	203040816	.	G	C	1110.68	PASS	AC=1;AF=0.725;AN=2;DP=6121;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,70:173:99:1728,0,2561:60,43,38,32
chr1	203045413	.	G	T	1642.2	PASS	AC=1;AF=0.615;AN=2;DP=5962;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,141:262:99:3391,0,3126:75,46,83,58
chr1	203045583	.	T	C	2495.01	PASS	AC=1;AF=0.615;AN=2;DP=5634;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:132,133:265:99:3360,0,3480:48,84,53,80
chr1	203045901	.	G	A,T	709.99	PASS	AC=1,0;AF=0.564,0.141;AN=2;DP=2609;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:85:99:21,15,29,20
chr1	203046029	.	C	T	1012.75	PASS	AC=1;AF=0.588;AN=2;DP=1776;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant29-variant31-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,67:125:99:1692,0,1522:30,28,32,35
chr1	203046195	.	A	G	323.89	PASS	AC=1;AF=0.705;AN=2;DP=1733;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,23:69:99:584,0,1260:17,29,11,12
chr1	203046340	.	G	A	590.24	PASS	AC=1;AF=0.588;AN=2;DP=725;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant29-variant31-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:719,0,526:12,12,13,13
chr1	203047621	.	C	A	531.66	PASS	AC=1;AF=0.791;AN=2;DP=2416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:750,0,836:20,18,20,15
chr1	203052360	.	A	G	247.45	PASS	AC=2;AF=1;AN=2;DP=682;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:340,24,0:0,0,5,3
chr1	203053323	.	AGTGTGT	A,AGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGT,AGT,AGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGT	102.21	PASS	AC=0,0,0,0,2,0,0,0;AF=0.091,0.432,0.068,0.045,0.045,0.023,0.023,0.045;AN=2;DP=298;set=variant3-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant26-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant44	GT:DP:GQ:SB	5/5:3:6:0,0,0,3
chr1	203053768	.	T	C	1986.45	PASS	AC=2;AF=0.977;AN=2;DP=3787;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2281,237,0:0,0,42,37
chr1	203060646	.	CTT	CT,CTTT,C	31.3	PASS	AC=0,1,0;AF=0.286,0.214,0.071;AN=2;DP=65;MQ=60;set=filterInvariant12-variant15-variant27-variant28-variant33-variant34-variant39	GT:DP:GQ:SB	0/2:11:20:3,0,6,2
chr1	203098275	.	T	G	2038.36	PASS	AC=2;AF=0.609;AN=2;DP=4075;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant11-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:6106,559,0:0,0,64,123
chr1	203098455	.	T	C	122.82	PASS	AC=2;AF=0.609;AN=2;DP=443;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant11-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:896,72,0:0,0,5,19
chr1	203135325	.	A	C	1317.37	PASS	AC=2;AF=0.966;AN=2;DP=3325;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2366,240,0:0,0,43,37
chr1	203135840	.	CT	C	2090.39	PASS	AC=2;AF=0.966;AN=2;DP=3179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2991,241,0:0,0,41,39
chr1	203136875	.	A	AC	66.31	PASS	AC=2;AF=0.643;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant15-variant18-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:327,33,0:0,0,9,2
chr1	203136983	.	A	T	812.82	PASS	AC=2;AF=0.764;AN=2;DP=2465;MQ=60;set=variant2-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2593,252,0:0,0,55,29
chr1	203137784	.	A	ACT	2292.17	PASS	AC=2;AF=0.917;AN=2;DP=3314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,77:79:99:3357,146,0:1,1,46,31
chr1	203148633	.	A	G	1941.93	PASS	AC=2;AF=1;AN=2;DP=4278;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3747,360,0:0,0,56,64
chr1	203152801	.	T	C	3622.53	PASS	AC=1;AF=0.683;AN=2;DP=3988;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,54:123:99:1427,0,1859:47,22,36,18
chr1	203153555	.	C	T	325.05	PASS	AC=1;AF=0.69;AN=2;DP=490;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:429,0,294:8,2,11,3
chr1	203153634	.	C	G	910.58	PASS	AC=1;AF=0.683;AN=2;DP=1916;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:1062,0,876:23,8,23,16
chr1	203154532	.	A	G	1722.99	PASS	AC=1;AF=0.743;AN=2;DP=1740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:904,0,660:6,16,8,23
chr1	203155882	.	G	C	2134.7	PASS	AC=1;AF=0.81;AN=2;DP=4309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,68:123:99:1684,0,1358:19,36,26,42
chr1	203277244	.	AG	A	636.23	PASS	AC=2;AF=1;AN=2;DP=1701;FS=0;MQ=60;MQRankSum=1.141;ReadPosRankSum=0.465;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1344,132,0:0,0,21,23
chr1	203317162	.	C	T	4701.78	PASS	AC=2;AF=0.857;AN=2;DP=6656;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5596,521,0:0,0,98,76
chr1	203320408	.	G	C	1806.64	PASS	AC=2;AF=0.915;AN=2;DP=2600;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2300,225,0:0,0,38,37
chr1	203456890	.	G	GGCA	1318.78	PASS	AC=2;AF=0.694;AN=2;DP=3021;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3878,262,0:0,0,37,50
chr1	203458407	.	T	C	1052.49	PASS	AC=2;AF=0.604;AN=2;DP=2841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4767,444,0:0,0,74,74
chr1	203459138	.	C	A	62.94	PASS	AC=2;AF=0.708;AN=2;DP=98;MQ=60;set=variant2-variant3-variant6-variant10-variant15-variant17-variant21-variant22-variant24-variant27-variant29-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:238,24,0:0,0,5,3
chr1	203459196	.	G	T	134.09	PASS	AC=2;AF=0.773;AN=2;DP=119;MQ=60;set=variant2-variant3-variant5-variant6-variant11-variant15-variant21-variant22-variant27-variant29-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:247,30,0:0,0,5,5
chr1	203459382	.	C	A	74.47	PASS	AC=2;AF=0.667;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant15-variant16-variant17-variant21-variant22-variant27-variant28-variant29-variant36-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:18:270,18,0:0,0,3,2
chr1	203459402	.	A	T	74.47	PASS	AC=2;AF=0.714;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,6,2
chr1	203459718	.	G	A	278.98	PASS	AC=2;AF=0.604;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1596,148,0:0,0,30,20
chr1	203465396	.	T	C	4299.44	PASS	AC=2;AF=0.63;AN=2;DP=3131;MQ=60;set=variant3-variant4-variant5-variant7-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4133,405,0:0,0,54,81
chr1	203465570	.	C	G	198.14	PASS	AC=2;AF=0.691;AN=2;DP=592;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:567,54,0:0,0,7,11
chr1	203473044	.	T	C	468.79	PASS	AC=2;AF=0.681;AN=2;DP=1025;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:817,66,0:0,0,4,18
chr1	203478008	.	A	C	57.92	PASS	AC=1;AF=0.5;AN=2;DP=28;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant29	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:86:86,0,275:7,3,1,3
chr1	203596041	.	A	G	111.82	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=168;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:44,18:62:79:79,0,778:38,6,0,18
chr1	203596318	.	A	G	991.72	PASS	AC=2;AF=0.866;AN=2;DP=1648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1294,129,0:0,0,19,24
chr1	203651824	.	C	T	649.9	PASS	AC=2;AF=0.919;AN=2;DP=1036;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:932,84,0:0,0,18,10
chr1	203651927	.	T	C	1688.98	PASS	AC=2;AF=0.919;AN=2;DP=2525;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2267,219,0:0,0,41,32
chr1	203652040	.	T	C	1363.09	PASS	AC=2;AF=0.919;AN=2;DP=2593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2035,177,0:0,0,28,31
chr1	203652140	.	C	G	1212.27	PASS	AC=2;AF=0.919;AN=2;DP=2137;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2363,163,0:0,0,24,30
chr1	203652141	.	G	A	1212.27	PASS	AC=2;AF=0.919;AN=2;DP=2125;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2363,163,0:0,0,23,30
chr1	203652444	.	A	G	3234.51	PASS	AC=2;AF=0.919;AN=2;DP=5550;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4468,453,0:0,0,76,75
chr1	203667409	.	T	C	3987.4	PASS	AC=2;AF=0.919;AN=2;DP=7625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6227,603,0:0,0,106,95
chr1	203698672	.	CAA	CA,CAAA,C	226.51	PASS	AC=1,0,0;AF=0.449,0.064,0.064;AN=2;DP=1533;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:27:99:9,6,10,2
chr1	203708772	.	C	T	2595.55	PASS	AC=1;AF=0.5;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant17-variant21	GT:AD:DP:GQ:PL:SB	0/1:119,142:261:99:3362,0,2881:56,63,66,76
chr1	203709034	.	A	G	353.12	PASS	AC=1;AF=0.722;AN=2;DP=1826;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,16:50:99:384,0,919:17,17,9,7
chr1	203709068	.	T	C	450.79	PASS	AC=1;AF=0.722;AN=2;DP=1828;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,22:57:99:617,0,956:19,16,10,12
chr1	203709569	.	CTTT	CT,CTT,CTTTT,C	863.68	PASS	AC=1,0,0,0;AF=0.349,0.244,0.035,0.012;AN=2;DP=3762;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:87:99:26,14,33,14
chr1	203740615	.	T	C	3000.35	PASS	AC=2;AF=0.743;AN=2;DP=3627;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:2971,302,0:0,0,47,54
chr1	203741110	.	C	T	862.4	PASS	AC=1;AF=0.542;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant10-variant15-variant18-variant23-variant26-variant29-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:771,0,1172:31,12,21,13
chr1	203741368	.	C	A	878.6	PASS	AC=2;AF=0.743;AN=2;DP=1064;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1161,90,0:0,0,6,24
chr1	203744258	.	T	C	205.68	PASS	AC=2;AF=0.766;AN=2;DP=307;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:375,36,0:0,0,4,8
chr1	203744707	.	G	C	8045.78	PASS	AC=2;AF=0.989;AN=2;DP=9634;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:8277,785,0:0,0,149,113
chr1	203766395	.	T	C	3564.59	PASS	AC=2;AF=0.808;AN=2;DP=4005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4332,402,0:0,0,47,87
chr1	203766827	.	T	C	2864.06	PASS	AC=2;AF=0.712;AN=2;DP=3777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4483,443,0:0,0,65,83
chr1	203770945	.	ATT	AT,A,ATTT	940.64	PASS	AC=2,0,0;AF=0.58,0.307,0.011;AN=2;DP=2312;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:59:99:0,0,28,31
chr1	203771420	.	G	A	2137.99	PASS	AC=1;AF=0.5;AN=2;DP=333;FractionInformativeReads=1;MQ=60;set=variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:94,102:196:99:2577,0,2360:43,51,44,58
chr1	203771794	.	G	T	1080.4	PASS	AC=2;AF=1;AN=2;DP=1671;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1782,153,0:0,0,15,36
chr1	203771842	.	C	CT	331.78	PASS	AC=2;AF=0.691;AN=2;DP=712;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-filterInvariant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:822,87,0:0,0,6,23
chr1	203787700	.	T	C	1303.51	PASS	AC=2;AF=1;AN=2;DP=1567;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1407,138,0:0,0,29,17
chr1	203803016	.	A	G	3020.8	PASS	AC=2;AF=1;AN=2;DP=3611;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3233,321,0:0,0,41,66
chr1	203821200	.	G	A	2008.86	PASS	AC=2;AF=1;AN=2;DP=3191;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2498,222,0:0,0,52,22
chr1	203839273	.	C	T	780.9	PASS	AC=2;AF=0.854;AN=2;DP=828;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:704,69,0:0,0,13,10
chr1	203839505	.	T	C	9146.91	PASS	AC=2;AF=1;AN=2;DP=10805;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,281:281:99:8428,842,0:0,0,153,128
chr1	204006538	.	T	C	482.13	PASS	AC=2;AF=0.898;AN=2;DP=2165;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1807,159,0:0,0,34,19
chr1	204006597	.	G	A	917.88	PASS	AC=2;AF=0.864;AN=2;DP=4198;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3077,283,0:0,0,57,38
chr1	204010389	.	G	T	697.94	PASS	AC=2;AF=0.898;AN=2;DP=2069;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1635,160,0:0,0,22,32
chr1	204081655	.	A	ACACACT,ACACACACACT,ACACT,ACACACACT,ACACACACACACT,ACACACACACACACACACT,ACACACACACACACACT	1397.54	PASS	AC=1,1,0,0,0,0,0;AF=0.19,0.431,0.103,0.121,0.103,0.017,0.017;AN=2;DP=1136;set=variant-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant12-variant26-variant28-variant30-variant31-variant32-variant35-variant24-variant36-variant37-variant38-variant39-variant41-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:31:99:0,0,28,3
chr1	204082002	.	C	T	1309.73	PASS	AC=1;AF=0.661;AN=2;DP=3139;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,65:142:99:1795,0,2157:38,39,35,30
chr1	204082323	.	C	T	332.79	PASS	AC=2;AF=0.689;AN=2;DP=1335;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1295,126,0:0,0,21,21
chr1	204086147	.	T	C	440.86	PASS	AC=1;AF=0.5;AN=2;DP=135;MQ=60;set=variant8-variant15-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:534,0,325:9,2,13,3
chr1	204095280	.	T	C	3207.96	PASS	AC=1;AF=0.5;AN=2;DP=829;MQ=60;set=variant8-variant15-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:101,103:204:99:2703,0,2703:40,61,42,61
chr1	204095478	.	C	T	903.36	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,36:64:99:1075,0,765:12,16,19,17
chr1	204096630	.	T	C	916.54	PASS	AC=1;AF=0.92;AN=2;DP=2028;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:736,0,444:9,9,15,13
chr1	204101421	.	G	A	993.57	PASS	AC=1;AF=0.5;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant18	GT:AD:DP:GQ:PL:SB	0/1:105,53:158:99:1173,0,2618:48,57,23,30
chr1	204103618	.	G	A	722.58	PASS	AC=1;AF=0.75;AN=2;DP=1376;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:422,0,334:8,4,9,6
chr1	204108961	.	A	G	65.43	PASS	AC=1;AF=0.531;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant11-variant13-variant15-variant18-variant24-variant28-variant29-variant31-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:420,0,329:9,0,11,0
chr1	204110334	.	A	G	3004.95	PASS	AC=2;AF=0.966;AN=2;DP=7143;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6115,602,0:0,0,115,86
chr1	204120952	.	G	T	6228.63	PASS	AC=1;AF=0.563;AN=2;DP=1867;MQ=60;set=variant8-variant10-variant12-variant15-variant19-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:123,149:272:99:3747,0,2917:52,71,65,84
chr1	204124370	.	AC	A	4364.51	PASS	AC=1;AF=0.6;AN=2;DP=1833;MQ=60;set=variant8-variant9-variant10-variant12-variant15-variant16-variant22-variant24-variant26-variant29-variant32-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:67,55:122:99:1429,0,1798:22,45,22,33
chr1	204124865	.	C	T	1527.96	PASS	AC=1;AF=0.62;AN=2;DP=2623;MQ=60;set=variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,53:129:99:1206,0,2005:44,32,28,25
chr1	204125051	.	G	T	850.04	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.966;QD=11.81;ReadPosRankSum=0.588;SOR=0.728;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:878,0,1044:11,28,9,24
chr1	204125089	.	G	A	1276.18	PASS	AC=1;AF=0.571;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:550,0,581:4,16,5,14
chr1	204125464	.	T	TCAGACAGA,TCAGACAGACAGA	1853.03	PASS	AC=0,1;AF=0.367,0.233;AN=2;DP=1290;MQ=60;set=variant8-variant9-variant10-variant12-variant15-variant16-variant22-variant24-variant26-variant29-variant32-variant36-variant37-variant39-variant40	GT:DP:GQ:SB	0/2:60:99:12,22,7,19
chr1	204126378	.	G	A	1839.41	PASS	AC=1;AF=0.571;AN=2;DP=423;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1262,0,1382:36,12,33,11
chr1	204130376	.	G	C	157.49	PASS	AC=1;AF=0.63;AN=2;DP=1136;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant25-variant31-variant33-variant34-variant35-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,32:74:99:756,0,1084:24,18,19,13
chr1	204131186	.	T	G	4370.51	PASS	AC=1;AF=0.563;AN=2;DP=1000;MQ=60;set=variant8-variant10-variant12-variant15-variant26-variant32-variant34-variant39	GT:AD:DP:GQ:PL:SB	0/1:100,85:185:99:2017,0,2433:57,43,51,34
chr1	204159537	.	T	TTG,TC	192.13	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=109;MQ=60;set=variant8-variant10-variant12-variant15-variant19-variant26-variant32-variant39	GT:DP:GQ:SB	0/1:18:99:0,5,4,9
chr1	204159541	.	CG	C	102.49	PASS	AC=1;AF=0.5;AN=2;DP=98;MQ=60;set=variant8-variant10-variant12-variant15-variant26-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:374,0,386:1,5,0,9
chr1	204161947	.	C	T	1468.75	PASS	AC=1;AF=0.5;AN=2;DP=622;MQ=60;set=variant12-variant15-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:63,77:140:99:1926,0,1587:32,31,38,39
chr1	204162142	.	G	T	326.32	PASS	AC=1;AF=0.5;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:335,0,338:1,10,3,10
chr1	204165554	.	C	T	222.79	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:251,0,574:10,15,4,8
chr1	204165609	.	CA	C	196.28	PASS	AC=1;AF=0.571;AN=2;DP=580;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant21-variant26-variant27-variant32-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:187,0,563:5,12,2,5
chr1	204167263	.	G	A	664.45	PASS	AC=1;AF=0.556;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant14-variant15-variant26-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:457,0,321:7,6,11,7
chr1	204167398	.	C	T	650.75	PASS	AC=1;AF=0.5;AN=2;DP=352;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant15-variant26-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1030,0,1008:23,18,23,18
chr1	204167672	.	T	C	3161.53	PASS	AC=1;AF=0.563;AN=2;DP=945;MQ=60;set=variant8-variant12-variant14-variant15-variant26-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,77:159:99:1854,0,2177:31,51,32,45
chr1	204172090	.	G	A	1360.95	PASS	AC=1;AF=0.5;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,56:111:99:1389,0,1246:28,27,24,32
chr1	204191148	.	ATCTC	ATC,ATCTCTCTCTCTCTC,ATCTCTC,ATCTCTCTCTCTCTCTCTC,ATCTCTCTCTCTCTCTCTCTCTC,A,ATCTCTCTCTCTCTCTCTCTC,ATCTCTCTC,ATCTCTCTCTCTCTCTC	369.01	PASS	AC=1,0,0,0,0,1,0,0,0;AF=0.64,0.012,0.012,0.198,0.023,0.012,0.023,0.023,0.035;AN=2;DP=2429;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	6/1:39:80:1,0,14,24
chr1	204191384	.	A	C	769.63	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:931,0,931:19,18,11,22
chr1	204218714	.	T	C	286.77	PASS	AC=2;AF=1;AN=2;DP=564;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:616,60,0:0,0,8,12
chr1	204379452	.	T	C	1216.06	PASS	AC=1;AF=0.5;AN=2;DP=683;MQ=60;set=variant5-variant11-variant15-variant17-variant22-variant29-variant30-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1440,0,1523:25,29,27,27
chr1	204379617	.	T	C	4944.53	PASS	AC=2;AF=0.989;AN=2;DP=7006;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5425,518,0:0,0,94,79
chr1	204394347	.	C	A	206.04	PASS	AC=1;AF=0.5;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant15-variant17-variant22-variant29-variant30-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:479,0,705:9,16,6,13
chr1	204394888	.	CA	C	539.28	PASS	AC=1;AF=0.542;AN=2;DP=521;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:568,0,407:6,11,7,15
chr1	204396728	.	A	C	862.17	PASS	AC=1;AF=0.542;AN=2;DP=772;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,23:66:99:498,0,1208:30,13,13,10
chr1	204396745	.	GA	G	948.31	PASS	AC=1;AF=0.542;AN=2;DP=966;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,30:86:99:658,0,1430:35,21,17,13
chr1	204396830	.	G	A	1472.22	PASS	AC=1;AF=0.542;AN=2;DP=1547;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:105,59:164:99:1304,0,2411:52,53,31,28
chr1	204398938	.	G	A	385.71	PASS	AC=1;AF=0.542;AN=2;DP=435;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:235,0,772:15,9,8,4
chr1	204399061	.	A	G	2230.38	PASS	AC=1;AF=0.542;AN=2;DP=1603;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:78,65:143:99:2577,0,4213:48,30,38,27
chr1	204399064	.	G	A	2221.37	PASS	AC=1;AF=0.542;AN=2;DP=1636;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,70:149:99:2610,0,4210:49,30,42,28
chr1	204403659	.	A	G	1704.87	PASS	AC=1;AF=0.563;AN=2;DP=2390;set=variant5-variant8-variant9-variant11-variant13-variant15-variant17-variant22-variant24-variant27-variant29-variant30-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:91,79:170:99:1889,0,2076:46,45,34,45
chr1	204409281	.	C	G	794.88	PASS	AC=2;AF=0.977;AN=2;DP=2015;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2177,200,0:0,0,42,25
chr1	204411942	.	C	T	219.19	PASS	AC=1;AF=0.625;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant27-variant29	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:22:247,0,22:1,1,1,6
chr1	204413297	.	C	T	5482.42	PASS	AC=1;AF=0.869;AN=2;DP=6429;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,78:161:99:2988,0,4385:39,44,35,43
chr1	204413299	.	G	A	5482.42	PASS	AC=1;AF=0.869;AN=2;DP=6357;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,80:164:99:2988,0,4385:41,43,37,43
chr1	204416501	.	C	T	702.95	PASS	AC=1;AF=0.556;AN=2;DP=687;MQ=60;set=variant8-variant9-variant15-variant17-variant22-variant24-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1095,0,851:22,16,23,19
chr1	204418145	.	C	T	218.9	PASS	AC=1;AF=0.556;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant15-variant17-variant22-variant24-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:11,23:34:99:591,0,258:6,5,12,11
chr1	204418198	.	T	C	1232.67	PASS	AC=1;AF=0.884;AN=2;DP=1726;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,20:59:99:480,0,1117:25,14,11,9
chr1	204418889	.	C	T	559.86	PASS	AC=1;AF=0.869;AN=2;DP=913;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:212,0,576:13,5,5,2
chr1	204418939	.	C	T	1190.47	PASS	AC=1;AF=0.869;AN=2;DP=2037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:547,0,849:21,10,15,8
chr1	204425028	.	G	A	589.46	PASS	AC=1;AF=0.556;AN=2;DP=515;MQ=60;set=variant8-variant9-variant15-variant17-variant22-variant24-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:717,0,746:20,9,19,9
chr1	204426052	.	A	C	328.94	PASS	AC=1;AF=0.85;AN=2;DP=377;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:147,0,687:5,2,4,0
chr1	204426295	.	A	G	1753.59	PASS	AC=1;AF=0.583;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant22-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:102,78:180:99:1782,0,2525:46,56,36,42
chr1	204426373	.	C	T	1000.96	PASS	AC=1;AF=0.556;AN=2;DP=774;MQ=60;set=variant8-variant9-variant15-variant17-variant22-variant24-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:63,46:109:99:1192,0,1773:21,42,13,33
chr1	204429212	.	A	T	2305.51	PASS	AC=2;AF=0.989;AN=2;DP=2409;MQ=60;MQRankSum=1.266;ReadPosRankSum=-0.789;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:4044,274,0:0,0,31,60
chr1	204429213	.	T	G	2305.51	PASS	AC=2;AF=0.989;AN=2;DP=2309;FS=0;MQ=60;MQRankSum=0.031;ReadPosRankSum=-0.123;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:4044,274,0:0,0,29,59
chr1	204429215	.	T	A	2221.77	PASS	AC=2;AF=0.989;AN=2;DP=2256;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.831;ReadPosRankSum=0.277;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3960,265,0:0,0,27,57
chr1	204429216	.	A	G	2176.77	PASS	AC=2;AF=0.989;AN=2;DP=2224;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.054;ReadPosRankSum=-0.081;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:3870,259,0:0,0,27,56
chr1	204429285	.	A	G	773.1	PASS	AC=2;AF=0.989;AN=2;DP=861;FractionInformativeReads=1;MQ=60;MQRankSum=0.318;ReadPosRankSum=-1.059;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1109,96,0:0,0,9,23
chr1	204429838	.	C	G	3127.64	PASS	AC=2;AF=0.977;AN=2;DP=7026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:5827,570,0:0,0,90,100
chr1	204433093	.	A	C	1309.59	PASS	AC=1;AF=0.881;AN=2;DP=2002;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,38:60:99:1194,0,548:16,6,30,8
chr1	204433511	.	T	TC	1136.72	PASS	AC=2;AF=0.989;AN=2;DP=1807;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1796,147,0:0,0,34,15
chr1	204434277	.	T	C	1451.6	PASS	AC=2;AF=0.989;AN=2;DP=1349;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1381,132,0:0,0,28,16
chr1	204434325	.	C	CCT	515.02	PASS	AC=1;AF=0.591;AN=2;DP=406;MQ=60;set=variant8-variant9-variant13-variant15-variant17-variant22-variant24-variant27-variant29-variant30-variant39	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:755,0,1101:9,19,5,15
chr1	204434326	.	A	G	524.03	PASS	AC=1;AF=0.591;AN=2;DP=423;MQ=60;set=variant8-variant9-variant13-variant15-variant17-variant22-variant24-variant27-variant29-variant30-variant39	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:755,0,1101:9,19,5,15
chr1	204436066	.	G	A	1359	PASS	AC=1;AF=0.556;AN=2;DP=1052;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant15-variant17-variant22-variant24-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:63,65:128:99:1605,0,1571:29,34,32,33
chr1	204436520	.	G	C	61.77	PASS	AC=2;AF=0.97;AN=2;DP=144;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr1	204438334	.	C	T	4814.17	PASS	AC=2;AF=0.953;AN=2;DP=7265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5469,538,0:0,0,81,99
chr1	204438643	.	G	T	1387.37	PASS	AC=2;AF=0.953;AN=2;DP=3844;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3564,364,0:0,0,60,63
chr1	204494756	.	G	GT	136.23	PASS	AC=1;AF=0.5;AN=2;DP=918;MQ=60;set=variant4-filterInvariant8-filterInvariant10-filterInvariant11-variant12-filterInvariant15-variant25-filterInvariant29-filterInvariant32-variant35-variant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:27,8:35:78:78,0,576:9,18,2,6
chr1	204495595	.	GTT	GTTT,GTTTT,G	514.13	PASS	AC=1,0,0;AF=0.605,0.013,0.053;AN=2;DP=1789;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:46:17:3,3,14,26
chr1	204501383	.	C	T	3052.65	PASS	AC=2;AF=0.611;AN=2;DP=677;MQ=60;set=variant15-variant17-variant22-variant27-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3081,300,0:0,0,56,44
chr1	204506107	.	C	T	1194.34	PASS	AC=2;AF=0.73;AN=2;DP=2295;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,93:95:99:2623,235,0:1,1,45,48
chr1	204506174	.	CT	C	2124.32	PASS	AC=2;AF=0.611;AN=2;DP=421;MQ=60;set=variant15-variant17-variant22-variant27-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,65:67:99:2162,134,0:1,1,27,38
chr1	204512100	.	T	C	625.1	PASS	AC=2;AF=0.73;AN=2;DP=1135;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1330,120,0:0,0,11,29
chr1	204515863	.	C	T	444.37	PASS	AC=2;AF=0.736;AN=2;DP=566;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:662,51,0:0,0,15,2
chr1	204516025	.	A	G	2592.95	PASS	AC=2;AF=0.73;AN=2;DP=4394;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5022,492,0:0,0,83,81
chr1	204518842	.	C	A	5770.27	PASS	AC=2;AF=0.833;AN=2;DP=7923;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,273:273:99:8984,817,0:0,0,160,113
chr1	204519692	.	GT	G	279.59	PASS	AC=2;AF=0.764;AN=2;DP=574;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,8:9:2:156,2,0:0,1,4,4
chr1	204520209	.	C	T	2994.87	PASS	AC=2;AF=0.716;AN=2;DP=2415;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2739,231,0:0,0,18,59
chr1	204520589	.	C	G	101.1	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=4.589;FractionInformativeReads=1;MQ=59.62;MQRankSum=-1.29;QD=4.6;ReadPosRankSum=0.405;SOR=1.158;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:129,0,404:6,10,4,2
chr1	204522000	.	C	CTT,CT	233.54	PASS	AC=0,2;AF=0.632,0.211;AN=2;DP=193;FS=0;set=variant2-variant3-variant5-variant7-variant10-variant12-variant15-variant17-variant19-variant22-variant25-variant26-variant28-variant29-variant31-variant33-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:7:21:0,0,2,5
chr1	204522018	.	C	T	262.97	PASS	AC=2;AF=0.825;AN=2;DP=127;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant6-variant7-variant10-variant12-variant15-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:284,24,0:0,0,3,5
chr1	204522457	.	T	C	1764.91	PASS	AC=2;AF=0.73;AN=2;DP=3054;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3248,258,0:0,0,38,48
chr1	204522489	.	C	T	1733.74	PASS	AC=2;AF=0.716;AN=2;DP=2683;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3085,257,0:0,0,48,38
chr1	204524474	.	G	T	496.69	PASS	AC=2;AF=0.716;AN=2;DP=882;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:903,75,0:0,0,17,8
chr1	204525054	.	GT	G	8077.97	PASS	AC=2;AF=0.73;AN=2;DP=11469;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,363:364:99:10090,1081,0:1,0,190,173
chr1	204527032	.	CTAA	CTAATAA,CTAATAATAA,C	1928.13	PASS	AC=1,1,0;AF=0.438,0.063,0.063;AN=2;DP=747;MQ=60;set=variant15-variant17-variant22-variant29-variant30-filterInvariant32-variant42-variant43	GT:DP:GQ:SB	1/2:49:99:1,1,13,34
chr1	204527060	.	C	T	1564.34	PASS	AC=2;AF=0.611;AN=2;DP=642;MQ=60;set=variant15-variant17-variant22-variant27-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1593,144,0:0,0,13,35
chr1	204586805	.	G	A	1917.24	PASS	AC=1;AF=0.625;AN=2;DP=1943;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:940,0,1178:18,12,15,21
chr1	204586812	.	C	T	924.51	PASS	AC=1;AF=0.556;AN=2;DP=566;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant22-variant27-variant29-variant30-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:893,0,1440:16,21,20,11
chr1	204587047	.	G	A	697.18	PASS	AC=1;AF=0.556;AN=2;DP=827;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant22-variant27-variant29-variant30-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,52:111:99:1289,0,1482:28,31,23,29
chr1	204587240	.	G	A	3282	PASS	AC=1;AF=0.625;AN=2;DP=3134;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1240,0,1474:34,26,28,23
chr1	204587569	.	G	C	3822.08	PASS	AC=1;AF=0.556;AN=2;DP=2759;MQ=60;set=variant8-variant15-variant22-variant27-variant29-variant30-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:227,180:407:99:4272,0,6027:107,120,94,86
chr1	204588140	.	G	A	2259.02	PASS	AC=1;AF=0.536;AN=2;DP=2332;set=variant6-variant8-variant15-variant18-variant22-variant26-variant27-variant29-variant30-variant31-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:109,90:199:99:2280,0,3251:49,60,39,51
chr1	204589101	.	G	A	1373.55	PASS	AC=1;AF=0.556;AN=2;DP=1004;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant22-variant27-variant29-variant30-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,74:132:99:1939,0,1537:31,27,34,40
chr1	204590044	.	G	A	1264.54	PASS	AC=2;AF=0.778;AN=2;DP=1069;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:1006,89,0:0,0,15,15
chr1	204591237	.	A	G	620.32	PASS	AC=2;AF=0.779;AN=2;DP=2437;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2133,201,0:0,0,36,31
chr1	204913652	.	A	G	91.72	PASS	AC=1;AF=0.869;AN=2;DP=678;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:241,0,181:0,5,3,6
chr1	204915393	.	A	G	1140.01	PASS	AC=1;AF=0.869;AN=2;DP=4901;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,50:117:99:1200,0,1762:36,31,26,24
chr1	204921258	.	A	G	1214.46	PASS	AC=1;AF=0.567;AN=2;DP=3676;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant29-variant31-variant32-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,62:152:99:1337,0,2141:43,47,27,35
chr1	204921312	.	C	T	222.01	PASS	AC=1;AF=0.5;AN=2;DP=370;MQ=60;set=variant-variant4-variant7-variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:45,49:94:99:1277,0,1120:16,29,18,31
chr1	204943285	.	A	T	3938.45	PASS	AC=2;AF=0.989;AN=2;DP=5921;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5088,520,0:0,0,93,81
chr1	204943947	.	C	A	1078.68	PASS	AC=1;AF=0.583;AN=2;DP=3100;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant22-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,88:152:99:2347,0,1583:30,34,37,51
chr1	204943991	.	C	T	947.13	PASS	AC=1;AF=0.583;AN=2;DP=2646;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant22-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,70:124:99:1919,0,1313:23,31,28,42
chr1	204943992	.	A	G	3809.19	PASS	AC=2;AF=0.989;AN=2;DP=4911;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4822,375,0:0,0,51,72
chr1	204945338	.	CTA	C	2374.58	PASS	AC=1;AF=0.523;AN=2;DP=2873;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant12-variant14-variant15-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,57:138:99:2128,0,3191:34,47,24,33
chr1	204966690	.	G	A	2831.92	PASS	AC=2;AF=0.932;AN=2;DP=4475;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3619,368,0:0,0,47,77
chr1	204966749	.	A	G	597.28	PASS	AC=1;AF=0.779;AN=2;DP=2122;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:832,0,679:10,20,11,20
chr1	204978533	.	A	G	4174.58	PASS	AC=2;AF=0.786;AN=2;DP=4663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4314,411,0:0,0,76,61
chr1	204978643	.	C	A	2424.86	PASS	AC=2;AF=0.672;AN=2;DP=4120;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5299,530,0:0,0,90,87
chr1	204978704	.	G	A	502.74	PASS	AC=1;AF=0.5;AN=2;DP=1654;MQ=60;set=variant-variant2-variant4-variant8-variant11-variant12-variant15-variant21-variant23-variant24-variant28-variant30-variant36	GT:AD:DP:GQ:PL:SB	0/1:101,61:162:99:1444,0,2515:47,54,30,31
chr1	204986586	.	T	C	1026.16	PASS	AC=2;AF=0.943;AN=2;DP=1850;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1423,129,0:0,0,23,20
chr1	204988183	.	C	A	1363.89	PASS	AC=2;AF=0.737;AN=2;DP=2624;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,100:101:99:3015,291,0:1,0,45,55
chr1	204988535	.	T	C	715.17	PASS	AC=2;AF=0.736;AN=2;DP=2444;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2591,240,0:0,0,33,47
chr1	204988603	.	C	CCATTCATT,CCATTCATTCATT,CCATTCATTCATTCATT,CCATT	727.14	PASS	AC=2,0,0,0;AF=0.625,0.273,0.011,0.034;AN=2;DP=2091;set=Intersection	GT:DP:GQ:SB	1/1:35:99:0,0,15,20
chr1	204989163	.	T	G	2241.75	PASS	AC=2;AF=0.73;AN=2;DP=3370;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3238,314,0:0,0,46,59
chr1	204990860	.	G	C	2528.43	PASS	AC=2;AF=0.943;AN=2;DP=3598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3621,353,0:0,0,62,56
chr1	204991517	.	A	C	84.91	PASS	AC=1;AF=0.5;AN=2;DP=2175;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant26-filterInvariant27-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant36-filterInvariant38-filterInvariant40-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:60,14:74:95:95,0,3213:16,44,14,0
chr1	204991520	.	A	C	84.91	PASS	AC=1;AF=0.5;AN=2;DP=1359;set=filterInvariant-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant15-variant19-filterInvariant20-filterInvariant22-filterInvariant27-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant34-variant36-filterInvariant38	GT:AD:DP:GQ:PL:SB	0/1:64,9:73:85:85,0,3249:19,45,9,0
chr1	205028581	.	C	G	1048.92	PASS	AC=1;AF=0.5;AN=2;DP=1111;MQ=60;set=variant2-variant4-variant7-variant10-variant11-variant15-variant17-variant18-variant19-variant21-variant22-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:644,0,912:19,17,14,15
chr1	205028883	.	CAG	C	160.66	PASS	AC=1;AF=0.643;AN=2;DP=680;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:351,0,354:3,6,2,7
chr1	205030862	.	C	T	536.43	PASS	AC=1;AF=0.5;AN=2;DP=656;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant10-variant11-variant15-variant17-variant18-variant19-variant21-variant22-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:490,0,802:20,8,13,6
chr1	205031116	.	C	T	2270.17	PASS	AC=1;AF=0.569;AN=2;DP=7194;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:151,164:315:99:3566,0,3669:84,67,80,84
chr1	205031744	.	G	A	1350.76	PASS	AC=1;AF=0.5;AN=2;DP=2512;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,72:188:99:1463,0,2985:57,59,38,34
chr1	205031769	.	G	A	1234.3	PASS	AC=1;AF=0.5;AN=2;DP=2370;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,70:184:99:1407,0,2840:51,63,35,35
chr1	205033283	.	G	A	408.53	PASS	AC=1;AF=0.586;AN=2;DP=463;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:255,0,248:7,0,7,1
chr1	205033374	.	T	C	1477.73	PASS	AC=1;AF=0.569;AN=2;DP=3130;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,74:143:99:1661,0,1599:45,24,45,29
chr1	205034488	.	A	G	91.72	PASS	AC=1;AF=0.565;AN=2;DP=579;MQ=60;set=variant-variant2-variant4-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant21-variant22-variant27-variant28-variant30-variant31-variant32-variant34-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,24:29:81:675,0,81:1,4,7,17
chr1	205034852	.	A	ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC	1168.67	PASS	AC=1;AF=0.657;AN=2;DP=1652;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,14:53:99:714,0,2513:23,16,13,1
chr1	205038731	.	C	T	2522.09	PASS	AC=2;AF=0.775;AN=2;DP=2787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1871,157,0:0,0,15,38
chr1	205039288	.	T	C	2408.9	PASS	AC=1;AF=0.588;AN=2;DP=2857;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,47:84:99:1275,0,1369:10,27,14,33
chr1	205039295	.	A	C	922.36	PASS	AC=1;AF=0.5;AN=2;DP=1227;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:832,0,1668:11,31,9,24
chr1	205040835	.	A	G	156.22	PASS	AC=2;AF=0.915;AN=2;DP=527;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:288,30,0:0,0,5,5
chr1	205040943	.	C	G	728.99	PASS	AC=1;AF=0.639;AN=2;DP=1351;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:538,0,377:10,7,12,9
chr1	205041015	.	G	A	1535.02	PASS	AC=1;AF=0.588;AN=2;DP=2520;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:890,0,647:17,12,20,17
chr1	205041542	.	T	C	206.62	PASS	AC=1;AF=0.529;AN=2;DP=384;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant29-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:506,0,392:10,2,14,4
chr1	205042115	.	C	T	496.53	PASS	AC=1;AF=0.5;AN=2;DP=764;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant18-variant19-variant21-variant31-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1062,0,774:21,10,26,15
chr1	205042583	.	C	T	190.95	PASS	AC=1;AF=0.5;AN=2;DP=300;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant22-variant23-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:287,0,385:10,3,10,1
chr1	205042939	.	C	T	959.76	PASS	AC=1;AF=0.5;AN=2;DP=838;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant13-variant15-variant18-variant19-variant21-variant31-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1144,0,916:13,19,18,22
chr1	205043250	.	G	C	1286.91	PASS	AC=1;AF=0.588;AN=2;DP=1974;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:716,0,853:17,16,15,14
chr1	205044339	.	A	G	2449.37	PASS	AC=1;AF=0.597;AN=2;DP=1849;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:1095,0,901:19,20,21,20
chr1	205044354	.	G	A	1548.25	PASS	AC=2;AF=0.886;AN=2;DP=2819;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2847,237,0:0,0,40,38
chr1	205044416	.	C	A	1344.87	PASS	AC=2;AF=0.909;AN=2;DP=3003;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2469,228,0:0,0,35,41
chr1	205044842	.	T	C	234.01	PASS	AC=1;AF=0.5;AN=2;DP=358;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:255,0,509:4,9,4,5
chr1	205044866	.	G	C	863.29	PASS	AC=2;AF=0.886;AN=2;DP=1146;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1172,99,0:0,0,16,17
chr1	205045087	.	G	A	1208.93	PASS	AC=1;AF=0.609;AN=2;DP=1719;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,25:60:99:589,0,911:19,16,12,13
chr1	205046894	.	T	C	838.14	PASS	AC=1;AF=0.5;AN=2;DP=990;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:839,0,753:14,14,17,16
chr1	205052939	.	G	A	2932.65	PASS	AC=2;AF=0.875;AN=2;DP=4143;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2792,257,0:0,0,37,49
chr1	205053219	.	C	T	2401.77	PASS	AC=2;AF=0.886;AN=2;DP=5392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4249,392,0:0,0,79,52
chr1	205053698	.	C	A	1353.81	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=2.28;FractionInformativeReads=1;MQ=60;MQRankSum=1.725;QD=9.6;ReadPosRankSum=1.027;SOR=0.491;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:84,57:141:99:1382,0,2291:28,56,22,35
chr1	205053722	.	CTT	CT,CTTTTT,C,CTTTTTT,CTTTT,CTTT	267.21	PASS	AC=0,0,1,0,0,0;AF=0.154,0.058,0.077,0.019,0.173,0.058;AN=2;DP=2105;set=variant-variant3-filterInvariant4-filterInvariant8-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant17-variant18-variant19-variant21-filterInvariant22-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant33-variant36-filterInvariant38-variant39-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/3:37:99:4,21,0,12
chr1	205053759	.	A	ACT	1168.21	PASS	AC=2;AF=0.898;AN=2;DP=965;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:747,51,0:0,0,0,17
chr1	205055949	.	G	A	2296.37	PASS	AC=2;AF=0.886;AN=2;DP=2960;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3038,269,0:0,0,48,42
chr1	205056326	.	ATT	A,AT,ATTT	253.97	PASS	AC=0,1,0;AF=0.032,0.452,0.161;AN=2;DP=662;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:21:52:1,6,1,13
chr1	205056681	.	GAAA	GA,G,GAA	40.99	PASS	AC=0,1,0;AF=0.389,0.056,0.167;AN=2;DP=108;MQ=60;set=variant8-variant15-variant17-variant21-variant22-variant24-variant29-variant38-variant42	GT:DP:GQ:SB	0/2:8:96:4,0,3,1
chr1	205056844	.	T	TTA	2262.45	PASS	AC=2;AF=0.886;AN=2;DP=2903;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:3323,235,0:0,0,38,40
chr1	205063949	.	C	T	168.24	PASS	AC=1;AF=0.609;AN=2;DP=788;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:331,0,551:10,6,8,2
chr1	205065733	.	G	T	2310.56	PASS	AC=1;AF=0.588;AN=2;DP=2334;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,41:86:99:965,0,1352:30,15,24,17
chr1	205067972	.	CAA	CA,C,CAAAA	67.31	PASS	AC=0,1,0;AF=0.467,0.2,0.067;AN=2;DP=127;FS=0;set=variant4-variant6-variant7-variant12-variant15-variant16-variant17-variant22-variant23-variant26-variant35-variant37-variant39-variant40-variant41	GT:DP:GQ:SB	0/2:5:5:1,0,4,0
chr1	205070573	.	G	A	440.7	PASS	AC=1;AF=0.63;AN=2;DP=256;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant12-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:15:116,0,15:1,0,3,0
chr1	205074424	.	C	T	406.1	PASS	AC=1;AF=0.597;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:276,0,132:0,4,2,7
chr1	205083865	.	T	C	386.88	PASS	AC=1;AF=0.594;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:219,0,242:7,4,5,3
chr1	205084120	.	G	A	890.03	PASS	AC=1;AF=0.614;AN=2;DP=967;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:356,0,478:6,12,3,10
chr1	205085358	.	T	C	211.85	PASS	AC=1;AF=0.531;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:705,0,432:8,9,11,16
chr1	205090885	.	C	G	634.79	PASS	AC=1;AF=0.588;AN=2;DP=3288;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:871,0,1619:38,18,22,19
chr1	205111761	.	A	C	1990.57	PASS	AC=1;AF=0.588;AN=2;DP=2105;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,23:66:99:543,0,1182:17,26,8,15
chr1	205112911	.	T	C	885.09	PASS	AC=1;AF=0.5;AN=2;DP=985;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant34-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,37:77:99:928,0,1025:21,19,19,18
chr1	205113833	.	A	G	720.3	PASS	AC=1;AF=0.5;AN=2;DP=1503;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant34-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,59:109:99:1804,0,1534:15,35,16,43
chr1	205114653	.	G	GT,GTT	602.7	PASS	AC=1,0;AF=0.533,0.033;AN=2;DP=3303;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-filterInvariant27-filterInvariant30-variant31-variant34-variant37-variant38-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:101:99:17,31,16,37
chr1	205114665	.	G	T	1828.61	PASS	AC=1;AF=0.515;AN=2;DP=3120;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:60,30:90:99:409,0,1671:15,45,12,18
chr1	205114873	.	C	G	913.09	PASS	AC=1;AF=0.594;AN=2;DP=964;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:334,0,382:9,6,7,3
chr1	205115099	.	G	A	902.9	PASS	AC=1;AF=0.588;AN=2;DP=1717;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,36:60:99:940,0,782:14,10,22,14
chr1	205115150	.	C	A	807.09	PASS	AC=1;AF=0.5;AN=2;DP=1203;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant34-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,31:69:99:772,0,1176:23,15,17,14
chr1	205115701	.	AT	ATT,A,ATTT	41.85	PASS	AC=0,1,0;AF=0.077,0.385,0.038;AN=2;DP=373;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant8-filterInvariant10-variant11-filterInvariant15-variant29-variant33-variant38-filterInvariant40-filterInvariant42	GT:DP:GQ:SB	0/2:20:86:0,14,2,4
chr1	205116000	.	CT	CTT,C	39.61	PASS	AC=0,1;AF=0.071,0.429;AN=2;DP=116;MQ=60;set=variant4-variant11-variant15-variant17-variant24-filterInvariant36-variant43	GT:DP:GQ:SB	0/2:24:60:5,2,10,7
chr1	205129319	.	G	A	771.37	PASS	AC=1;AF=0.5;AN=2;DP=1279;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant31-variant34-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,34:90:99:782,0,1415:26,30,14,20
chr1	205130413	.	A	G	2290.47	PASS	AC=2;AF=0.955;AN=2;DP=3669;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3257,323,0:0,0,61,47
chr1	205131059	.	G	GAC	1018.58	PASS	AC=2;AF=0.886;AN=2;DP=1545;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1444,114,0:0,0,24,13
chr1	205133169	.	T	C	571.06	PASS	AC=1;AF=0.5;AN=2;DP=434;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant18-variant19-variant21-variant31-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:736,0,775:4,21,5,19
chr1	205157100	.	T	C	111.61	PASS	AC=1;AF=0.757;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:93:160,0,93:0,3,2,3
chr1	205157108	.	A	G	361.63	PASS	AC=2;AF=0.905;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:343,24,0:0,0,2,6
chr1	205225457	.	G	A	3543.38	PASS	AC=1;AF=0.589;AN=2;DP=3638;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,67:127:99:1725,0,1631:36,24,36,31
chr1	205240913	.	A	G	765.82	PASS	AC=2;AF=0.955;AN=2;DP=1735;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1619,138,0:0,0,33,13
chr1	205241659	.	T	C	1478.75	PASS	AC=2;AF=0.955;AN=2;DP=2692;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1952,197,0:0,0,33,33
chr1	205273142	.	G	C	1854.48	PASS	AC=1;AF=0.545;AN=2;DP=1496;MQ=60;set=variant3-variant5-variant7-variant11-variant14-variant15-variant20-variant24-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,74:180:99:1712,0,2732:55,51,34,40
chr1	205274174	.	A	G	577.28	PASS	AC=1;AF=0.762;AN=2;DP=1314;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:863,0,485:13,2,22,3
chr1	205275061	.	C	T	368.2	PASS	AC=1;AF=0.679;AN=2;DP=325;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:188,0,199:5,0,4,1
chr1	205275206	.	A	T	6847.12	PASS	AC=2;AF=0.989;AN=2;DP=6006;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:7514,512,0:0,0,99,71
chr1	205275207	.	G	T	6847.12	PASS	AC=2;AF=0.989;AN=2;DP=6043;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:7514,512,0:0,0,99,71
chr1	205275421	.	A	G	2916.31	PASS	AC=2;AF=0.989;AN=2;DP=5077;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3314,297,0:0,0,31,68
chr1	205306590	.	G	A	548.07	PASS	AC=1;AF=0.563;AN=2;DP=827;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant10-variant15-variant16-variant17-variant27-variant29-variant30-variant33-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:702,0,901:17,16,12,15
chr1	205312280	.	C	G	224.78	PASS	AC=1;AF=0.714;AN=2;DP=1558;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:1053,0,772:21,0,28,2
chr1	205312767	.	G	T	1668.07	PASS	AC=1;AF=0.603;AN=2;DP=3458;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,76:147:99:1929,0,1830:23,48,27,49
chr1	205313647	.	G	T	735.57	PASS	AC=2;AF=0.966;AN=2;DP=1849;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1355,140,0:0,0,16,32
chr1	205317503	.	C	T	365.28	PASS	AC=1;AF=0.5;AN=2;DP=617;MQ=60;set=variant2-variant5-variant12-variant14-variant15-variant17-variant18-variant21-variant23-variant28-variant31-variant32-variant33-variant34-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,6:26:99:157,0,597:12,8,6,0
chr1	205317676	.	T	C	327.23	PASS	AC=2;AF=0.821;AN=2;DP=1620;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1684,120,0:0,0,17,23
chr1	205317684	.	C	A	1055.34	PASS	AC=2;AF=1;AN=2;DP=1567;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1578,108,0:0,0,14,21
chr1	205325609	.	C	A	3856.55	PASS	AC=2;AF=0.697;AN=2;DP=3920;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3093,319,0:0,0,53,54
chr1	205353492	.	A	C	844.6	PASS	AC=1;AF=0.5;AN=2;DP=957;MQ=60;set=variant5-variant12-variant15-variant17-variant22-variant28-variant29-variant31-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:60,61:121:99:1358,0,1455:25,35,27,34
chr1	205385498	.	C	T	5266.32	PASS	AC=2;AF=0.905;AN=2;DP=7481;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6464,649,0:0,0,110,108
chr1	205388175	.	A	G	501.25	PASS	AC=1;AF=0.5;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant15-variant17-variant22-variant29-variant31-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:452,0,461:11,6,12,4
chr1	205389460	.	T	C	520.13	PASS	AC=2;AF=0.542;AN=2;DP=308;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant12-variant15-variant17-variant22-variant28-variant29-variant31-variant32-variant34-variant35	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:933,81,0:0,0,19,8
chr1	205473728	.	T	TTCC	204.75	PASS	AC=2;AF=0.682;AN=2;DP=1313;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1784,128,0:0,0,15,23
chr1	205473772	.	T	C	838.27	PASS	AC=1;AF=0.614;AN=2;DP=1015;MQ=60;set=variant3-variant4-variant8-variant9-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:724,0,548:14,11,8,18
chr1	205473974	.	C	G	3321.11	PASS	AC=2;AF=1;AN=2;DP=4284;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3367,356,0:0,0,61,58
chr1	205492679	.	G	A	2966.8	PASS	AC=1;AF=0.5;AN=2;DP=644;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant28	GT:AD:DP:GQ:PL:SB	0/1:113,124:237:99:2995,0,2729:50,63,56,68
chr1	205492756	.	A	G	4330.39	PASS	AC=2;AF=0.943;AN=2;DP=6122;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5183,476,0:0,0,78,81
chr1	205494411	.	G	A	1056.19	PASS	AC=1;AF=0.5;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant21-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:37,49:86:99:1492,0,987:10,27,14,35
chr1	205494924	.	C	T	36.18	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant21-variant28	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:65:65,0,261:7,2,3,1
chr1	205495392	.	A	G	6232.06	PASS	AC=2;AF=0.943;AN=2;DP=9265;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:7962,743,0:0,0,118,130
chr1	205495976	.	A	G	2150.69	PASS	AC=2;AF=1;AN=2;DP=5877;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,176:177:99:5116,491,0:1,0,78,98
chr1	205497066	.	G	A	2367.33	PASS	AC=1;AF=0.5;AN=2;DP=1003;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant21-variant26-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,90:186:99:2313,0,2524:44,52,45,45
chr1	205498021	.	T	C	116.87	PASS	AC=2;AF=0.708;AN=2;DP=775;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1576,129,0:0,0,35,8
chr1	205499355	.	C	A	441.49	PASS	AC=1;AF=0.5;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant15-variant20-variant25-variant26-variant27-variant28-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:500,0,458:12,8,12,5
chr1	205499495	.	G	A	1350.62	PASS	AC=1;AF=0.5;AN=2;DP=838;MQ=60;set=variant4-variant5-variant9-variant15-variant20-variant25-variant26-variant27-variant28-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,54:90:99:1345,0,833:16,20,21,33
chr1	205499577	.	C	G	678.8	PASS	AC=2;AF=0.597;AN=2;DP=1248;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1963,168,0:0,0,19,37
chr1	205499595	.	G	A	613.53	PASS	AC=1;AF=0.5;AN=2;DP=406;MQ=60;set=variant4-variant5-variant9-variant15-variant20-variant25-variant26-variant27-variant28-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:697,0,666:8,15,8,14
chr1	205499611	.	C	T	583.57	PASS	AC=1;AF=0.5;AN=2;DP=376;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant15-variant20-variant25-variant26-variant27-variant28-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:592,0,710:9,15,8,11
chr1	205499660	.	C	T	549.14	PASS	AC=1;AF=0.528;AN=2;DP=779;MQ=60;set=variant3-variant6-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant25-variant27-variant30-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:777,0,416:11,4,14,12
chr1	205499701	.	T	C	682.99	PASS	AC=1;AF=0.5;AN=2;DP=702;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant15-variant20-variant25-variant26-variant27-variant28-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:812,0,1220:30,11,22,8
chr1	205499921	.	C	G	990.99	PASS	AC=1;AF=0.5;AN=2;DP=710;MQ=60;set=variant4-variant5-variant9-variant15-variant20-variant25-variant26-variant27-variant28-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,35:80:99:917,0,1207:15,30,8,27
chr1	205500543	.	T	C	2370.29	PASS	AC=1;AF=0.526;AN=2;DP=2778;MQ=60;set=variant3-variant6-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant25-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,75:179:99:1817,0,2598:53,51,42,33
chr1	205501469	.	A	G	927.16	PASS	AC=1;AF=0.563;AN=2;DP=2160;MQ=60;set=variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,44:101:99:1326,0,1518:32,25,23,21
chr1	205501521	.	A	G	1281.29	PASS	AC=1;AF=0.563;AN=2;DP=2768;set=variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,57:123:99:1352,0,1569:36,30,27,30
chr1	205501843	.	A	G	522.47	PASS	AC=1;AF=0.563;AN=2;DP=674;MQ=60;set=variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:346,0,364:3,10,4,9
chr1	205501985	.	T	G	269.66	PASS	AC=1;AF=0.595;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant11-variant15-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:162,0,31:0,1,0,4
chr1	205548619	.	G	A	1045.75	PASS	AC=1;AF=0.542;AN=2;DP=940;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant11-variant15-variant20-variant21-variant26-variant28-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1112,0,1443:32,19,29,15
chr1	205549122	.	T	A	520.5	PASS	AC=1;AF=0.538;AN=2;DP=671;MQ=60;set=variant-variant7-variant11-variant15-variant17-variant20-variant21-variant26-variant28-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:688,0,844:5,22,5,18
chr1	205553346	.	ATTT	ATT,ATTTT,ATTTTT,ATTTTTT,A	115.16	PASS	AC=1,0,0,0,0;AF=0.28,0.14,0.06,0.04,0.02;AN=2;DP=1044;set=variant-variant2-variant3-filterInvariant4-variant6-variant7-filterInvariant9-variant12-variant13-variant15-variant17-variant19-variant22-variant23-variant26-filterInvariant28-filterInvariant31-variant32-variant35-filterInvariant37-filterInvariant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	0/1:25:99:4,9,2,10
chr1	205554085	.	G	C	185.23	PASS	AC=1;AF=0.661;AN=2;DP=2767;MQ=60;set=variant-variant3-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1772,0,2445:20,28,20,27
chr1	205554095	.	A	C	182.24	PASS	AC=1;AF=0.667;AN=2;DP=2495;MQ=60;set=variant-variant3-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,47:89:99:1771,0,2289:16,26,18,29
chr1	205555145	.	G	A	91.5	PASS	AC=1;AF=0.672;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:432,0,240:6,5,11,4
chr1	205561511	.	T	A	376.77	PASS	AC=1;AF=0.922;AN=2;DP=244;FS=0;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant38-variant39-variant-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:134,0,114:1,3,1,4
chr1	205568213	.	C	T	2001.48	PASS	AC=1;AF=0.563;AN=2;DP=900;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:587,0,1196:30,10,16,11
chr1	205568390	.	T	A	2345.03	PASS	AC=1;AF=0.618;AN=2;DP=1280;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant20-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1108,0,1397:19,36,22,27
chr1	205568438	.	G	T	1651.65	PASS	AC=1;AF=0.563;AN=2;DP=676;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:879,0,662:6,18,12,21
chr1	205569973	.	T	C	11113.5	PASS	AC=1;AF=0.563;AN=2;DP=4997;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:215,177:392:99:4485,0,5230:127,88,110,67
chr1	205570406	.	T	A	3447.48	PASS	AC=1;AF=0.563;AN=2;DP=1698;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,57:131:99:1528,0,1901:35,39,35,22
chr1	205570959	.	T	C	107.99	PASS	AC=1;AF=0.636;AN=2;DP=69;FractionInformativeReads=1;set=variant-variant2-variant11-variant15-variant17-variant24-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:28:160,0,28:1,1,3,2
chr1	205571467	.	C	T	2251.54	PASS	AC=1;AF=0.563;AN=2;DP=1134;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,45:81:99:1255,0,982:16,20,22,23
chr1	205571793	.	A	G	14903.3	PASS	AC=1;AF=0.563;AN=2;DP=6222;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:232,258:490:99:6656,0,5715:103,129,110,148
chr1	205580316	.	T	C	6910.69	PASS	AC=1;AF=0.571;AN=2;DP=6545;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant24-variant26-variant28-variant29-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:268,247:515:99:6199,0,6941:121,147,120,127
chr1	205582486	.	G	T	128.15	PASS	AC=1;AF=0.55;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:75:75,0,456:6,7,2,2
chr1	205582929	.	G	A	566.58	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=4.908;FractionInformativeReads=1;MQ=60;MQRankSum=1.025;QD=14.53;ReadPosRankSum=0.159;SOR=0.506;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:595,0,439:10,5,11,13
chr1	205583600	.	GA	G	4073.88	PASS	AC=1;AF=0.545;AN=2;DP=3629;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:186,168:354:99:4070,0,4540:103,83,90,78
chr1	205583989	.	G	A	2012.54	PASS	AC=1;AF=0.5;AN=2;DP=157;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.125;QD=12.82;ReadPosRankSum=-1.175;SOR=0.677;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:80,77:157:99:2041,0,2220:35,45,34,43
chr1	205584231	.	T	TA	1514.17	PASS	AC=1;AF=0.545;AN=2;DP=2093;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,96:217:99:1868,0,2663:55,66,46,50
chr1	205588637	.	C	T	6175.5	PASS	AC=1;AF=0.545;AN=2;DP=5112;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:309,267:576:99:6745,0,8091:167,142,147,120
chr1	205589574	.	C	T	1723.68	PASS	AC=1;AF=0.563;AN=2;DP=1077;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,75:141:99:1889,0,1744:32,34,34,41
chr1	205600635	.	GCCCGGC	G	31.66	PASS	AC=1;AF=0.625;AN=2;DP=32;MQ=60;set=variant2-variant11-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:66:123,0,66:1,0,2,1
chr1	205600977	.	C	A	198.91	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant11-variant15-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:416,0,561:9,7,12,6
chr1	205601119	.	T	A	627.41	PASS	AC=1;AF=0.5;AN=2;DP=526;MQ=60;set=variant-variant2-variant11-variant15-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,66:113:99:1496,0,1105:23,24,30,36
chr1	205615947	.	C	A	1175.41	PASS	AC=2;AF=0.909;AN=2;DP=1470;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1410,129,0:0,0,8,35
chr1	205626904	.	G	A	608.93	PASS	AC=1;AF=0.5;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant12-variant15-variant21-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:680,0,920:24,0,18,1
chr1	205626995	.	C	G	2768.27	PASS	AC=1;AF=0.5;AN=2;DP=1638;MQ=60;set=variant-variant2-variant12-variant15-variant21-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:119,114:233:99:2691,0,2960:70,49,70,44
chr1	205627101	.	AC	A	3736.06	PASS	AC=1;AF=0.5;AN=2;DP=3214;MQ=60;set=variant-variant2-variant12-variant15-variant20-variant21-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:187,180:367:99:4456,0,4667:90,97,85,95
chr1	205627886	.	A	T	474	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant20-variant25-variant27	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:740,0,789:17,15,17,10
chr1	205628073	.	G	A	811.06	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:823,0,1050:16,23,13,18
chr1	205630893	.	A	G	678.83	PASS	AC=1;AF=0.5;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,34:62:99:783,0,618:15,13,17,17
chr1	205631058	.	G	A	2474.89	PASS	AC=1;AF=0.5;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:61,100:161:99:2503,0,1555:37,24,55,45
chr1	205631767	.	A	G	211.7	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant14-variant15-variant24-variant26-variant32-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:182,0,314:6,4,5,1
chr1	205633983	.	C	T	1224.28	PASS	AC=1;AF=0.5;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:55,54:109:99:1253,0,1257:23,32,24,30
chr1	205649327	.	C	T	381.74	PASS	AC=2;AF=0.846;AN=2;DP=236;FS=0;MQ=60;set=variant3-variant4-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:325,30,0:0,0,7,3
chr1	205683280	.	T	C	11730.1	PASS	AC=2;AF=1;AN=2;DP=16825;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,436:436:99:13042,1306,0:0,0,212,224
chr1	205686523	.	G	GT,GTT	1161.96	PASS	AC=2,0;AF=0.632,0.015;AN=2;DP=4108;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:141:99:8,5,62,66
chr1	205687213	.	TA	T,TAA	911.53	PASS	AC=1,0;AF=0.307,0.193;AN=2;DP=13087;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:319:99:134,102,50,33
chr1	205687348	.	CTTTTTTCTTT	C	2291.46	PASS	AC=2;AF=0.652;AN=2;DP=10985;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:12,333:345:99:8942,715,0:5,7,131,202
chr1	205689807	.	T	G	1089.07	PASS	AC=2;AF=0.641;AN=2;DP=2065;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2092,191,0:0,0,18,46
chr1	205696671	.	G	A	146.45	PASS	AC=2;AF=0.966;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:575,42,0:0,0,13,1
chr1	205737450	.	T	C	908.22	PASS	AC=2;AF=0.955;AN=2;DP=2592;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2561,192,0:0,0,15,49
chr1	205737665	.	G	GT,GTT	282.32	PASS	AC=1,0;AF=0.866,0.037;AN=2;DP=578;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:9:0:0,1,3,5
chr1	205737956	.	G	C	464.01	PASS	AC=2;AF=0.955;AN=2;DP=1420;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1436,120,0:0,0,32,8
chr1	205738166	.	T	C	2846.14	PASS	AC=2;AF=0.955;AN=2;DP=10183;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,307:307:99:9777,920,0:0,0,153,154
chr1	205738251	.	C	A	1628.01	PASS	AC=2;AF=0.955;AN=2;DP=8923;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,268:268:99:7725,799,0:0,0,130,138
chr1	205738302	.	G	A	985.64	PASS	AC=2;AF=0.652;AN=2;DP=4421;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6076,579,0:0,0,78,116
chr1	205738975	.	AC	A	477.94	PASS	AC=2;AF=0.955;AN=2;DP=1851;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2319,216,0:0,0,50,22
chr1	205739192	.	T	C	1583.98	PASS	AC=2;AF=0.955;AN=2;DP=4195;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4115,398,0:0,0,60,73
chr1	205739266	.	C	T	1200.02	PASS	AC=2;AF=0.756;AN=2;DP=2517;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2648,213,0:0,0,33,38
chr1	205739396	.	T	G	1081.37	PASS	AC=2;AF=0.893;AN=2;DP=4049;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3485,321,0:0,0,57,50
chr1	205740403	.	A	G	88.49	PASS	AC=2;AF=0.94;AN=2;DP=333;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:214,15,0:0,0,5,0
chr1	205744138	.	G	T	1462.29	PASS	AC=2;AF=0.682;AN=2;DP=6389;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,207:208:99:5833,606,0:1,0,97,110
chr1	205744546	.	C	A	551.67	PASS	AC=2;AF=0.837;AN=2;DP=3948;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:2946,316,0:0,0,49,58
chr1	205759195	.	G	A	282.92	PASS	AC=1;AF=0.667;AN=2;DP=1207;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:554,0,691:13,16,8,15
chr1	205759876	.	T	C	674.71	PASS	AC=2;AF=0.895;AN=2;DP=2822;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1808,174,0:0,0,28,30
chr1	205764640	.	G	A	871.41	PASS	AC=2;AF=0.846;AN=2;DP=4832;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4720,471,0:0,0,76,81
chr1	205765795	.	T	A	43.71	PASS	AC=2;AF=0.89;AN=2;DP=431;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:411,33,0:0,0,9,2
chr1	205765980	.	C	T	1293.38	PASS	AC=1;AF=0.5;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant21-variant22-variant35	GT:AD:DP:GQ:PL:SB	0/1:28,50:78:99:1322,0,790:17,11,29,21
chr1	205766159	.	CA	C	1114.04	PASS	AC=2;AF=0.89;AN=2;DP=5462;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4497,381,0:0,0,61,66
chr1	205767885	.	G	A	934.23	PASS	AC=1;AF=0.661;AN=2;DP=3704;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,93:174:99:2415,0,2156:45,36,50,43
chr1	205779231	.	G	A	1311.47	PASS	AC=1;AF=0.583;AN=2;DP=1808;MQ=60;set=variant5-variant6-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant32-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,66:127:99:1753,0,1626:41,20,46,20
chr1	205797413	.	G	T	63.64	PASS	AC=1;AF=0.763;AN=2;DP=1313;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:467,0,750:16,12,13,6
chr1	205801872	.	A	G	1237.15	PASS	AC=1;AF=0.743;AN=2;DP=4899;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,94:162:99:2301,0,1407:34,34,43,51
chr1	205809642	.	G	C	1494.17	PASS	AC=1;AF=0.806;AN=2;DP=2978;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,43:98:99:1045,0,1391:20,35,15,28
chr1	205812614	.	C	T	226.57	PASS	AC=1;AF=0.759;AN=2;DP=246;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant20-variant22-variant23-variant24-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:185,0,148:4,1,4,4
chr1	205813672	.	T	C	414.07	PASS	AC=1;AF=0.629;AN=2;DP=441;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:307,0,346:9,2,5,6
chr1	205813677	.	T	C	414.07	PASS	AC=2;AF=0.955;AN=2;DP=670;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:906,66,0:0,0,14,8
chr1	205814485	.	G	A	1268.01	PASS	AC=1;AF=0.563;AN=2;DP=1905;MQ=60;set=variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,74:135:99:1796,0,1427:31,30,37,37
chr1	205814497	.	T	C	1429.96	PASS	AC=2;AF=0.943;AN=2;DP=5189;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:5253,421,0:0,0,66,73
chr1	205859798	.	G	C	272.83	PASS	AC=1;AF=0.583;AN=2;DP=232;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:306,0,394:0,11,2,8
chr1	205884646	.	CTGTGTG	CTG,CTGTGTGTG,C,CTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTG	339.76	PASS	AC=0,1,0,0,0;AF=0.426,0.222,0.093,0.019,0.019;AN=2;DP=548;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant20-variant-variant21-variant22-variant23-variant26-variant28-variant25-variant30-variant31-variant35-variant36-variant39-variant41-variant42	GT:DP:GQ:SB	0/2:10:33:0,2,3,5
chr1	205886647	.	C	T	495.23	PASS	AC=1;AF=0.5;AN=2;DP=281;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant19-variant22-variant35	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:711,0,676:12,17,15,16
chr1	206224085	.	A	T	452.61	PASS	AC=1;AF=0.5;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant15-variant31-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:45,23:68:99:608,0,1175:29,16,16,7
chr1	206224412	.	T	C	2493.1	PASS	AC=1;AF=0.5;AN=2;DP=1491;MQ=60;set=variant-variant5-variant15-variant31-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:147,149:296:99:3717,0,3652:78,69,81,68
chr1	206225011	.	G	C	1399.03	PASS	AC=1;AF=0.5;AN=2;DP=993;MQ=60;set=variant-variant5-variant15-variant31-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:97,82:179:99:1985,0,2481:42,55,32,50
chr1	206225582	.	G	A	229.13	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:257,0,346:2,9,3,6
chr1	206231151	.	C	G	709.21	PASS	AC=1;AF=0.5;AN=2;DP=593;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant15-variant31-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:45,69:114:99:1675,0,962:21,24,35,34
chr1	206231259	.	A	G	426.92	PASS	AC=1;AF=0.531;AN=2;DP=975;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant13-variant14-variant15-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,47:74:99:1267,0,698:13,14,23,24
chr1	206239403	.	C	T	1170.71	PASS	AC=1;AF=0.5;AN=2;DP=612;MQ=60;set=variant15-variant20-variant23-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,54:155:99:1199,0,2567:49,52,26,28
chr1	206239415	.	C	T	1149.86	PASS	AC=1;AF=0.5;AN=2;DP=625;MQ=60;set=variant15-variant20-variant23-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,54:154:99:1178,0,2480:49,51,27,27
chr1	206239574	.	T	C	630.04	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant23-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:658,0,599:7,16,12,14
chr1	206239667	.	G	A	371.27	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:400,0,281:1,5,2,8
chr1	206239668	.	A	G	371.27	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:400,0,281:1,5,2,8
chr1	206239697	.	G	C	253.88	PASS	AC=1;AF=0.667;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant39	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:67:282,0,67:0,3,0,7
chr1	206239956	.	A	G	374.07	PASS	AC=1;AF=0.583;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant23-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:402,0,173:6,0,10,0
chr1	206239993	.	C	A	561.99	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant23-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:590,0,287:8,1,17,1
chr1	206240271	.	G	A	939.57	PASS	AC=1;AF=0.5;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant23-variant34-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:968,0,1151:22,25,13,24
chr1	206332163	.	C	T	117.4	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant23	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:146,0,114:0,3,1,4
chr1	206516159	.	C	T	385	PASS	AC=1;AF=0.5;AN=2;DP=890;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:330,0,288:11,0,12,0
chr1	206516261	.	C	T	1383.04	PASS	AC=1;AF=0.5;AN=2;DP=7344;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:94,104:198:99:2497,0,2339:68,26,73,31
chr1	206566860	.	TA	T,TAA	1207.73	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=7735;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:203:99:88,58,52,5
chr1	206566904	.	T	C	4778.55	PASS	AC=1;AF=0.5;AN=2;DP=13435;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:205,133:338:99:3313,0,5109:123,82,98,35
chr1	206567100	.	C	T	3891.5	PASS	AC=1;AF=0.5;AN=2;DP=13887;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:269,133:402:99:2814,0,7191:88,181,46,87
chr1	206567165	.	T	A	1278.33	PASS	AC=1;AF=0.5;AN=2;DP=3453;set=variant-variant2-variant3-filterInvariant4-filterInvariant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,34:124:99:963,0,2945:14,76,5,29
chr1	206579936	.	A	G	105.89	PASS	AC=1;AF=0.5;AN=2;DP=508;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant10-filterInvariant11-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant40-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:266,0,320:10,4,8,4
chr1	206603535	.	G	A	4862.55	PASS	AC=2;AF=0.7;AN=2;DP=4405;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4637,461,0:0,0,75,79
chr1	206623685	.	G	T	4103.51	PASS	AC=1;AF=0.744;AN=2;DP=6638;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,118:209:99:2798,0,2124:45,46,66,52
chr1	206626779	.	A	G	476.74	PASS	AC=1;AF=0.795;AN=2;DP=1445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:696,0,499:4,14,10,17
chr1	206634429	.	A	G	1309.53	PASS	AC=1;AF=0.591;AN=2;DP=1992;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant21-variant23-variant27-variant28-variant31-variant32-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,59:100:99:1485,0,1122:20,21,28,31
chr1	206634997	.	C	T	920.57	PASS	AC=1;AF=0.591;AN=2;DP=1227;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant21-variant23-variant27-variant28-variant31-variant32-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,31:52:99:789,0,508:8,13,13,18
chr1	206635245	.	TAC	TACACAC,T,TACAC,TACACACAC	277.64	PASS	AC=2,0,0,0;AF=0.44,0.393,0.071,0.036;AN=2;DP=651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:9:33:0,0,5,4
chr1	206635295	.	T	G	391.81	PASS	AC=1;AF=0.591;AN=2;DP=413;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant21-variant23-variant27-variant28-variant31-variant32-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:318,0,307:8,3,8,4
chr1	206635570	.	C	T	1278.75	PASS	AC=1;AF=0.5;AN=2;DP=1353;MQ=60;set=variant3-variant4-variant12-variant15-variant16-variant19-variant22-variant24-variant26-variant27-variant29-variant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,47:112:99:1321,0,1895:41,24,31,16
chr1	206636489	.	A	AT	1297.2	PASS	AC=1;AF=0.577;AN=2;DP=1909;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant21-variant23-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:596,0,854:14,26,10,22
chr1	206637133	.	C	T	1424.21	PASS	AC=1;AF=0.591;AN=2;DP=1315;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant21-variant23-variant27-variant28-variant31-variant32-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,41:77:99:1188,0,925:18,18,19,22
chr1	206643774	.	A	G	217.23	PASS	AC=2;AF=0.579;AN=2;DP=540;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant20-variant22-variant26-variant28-variant31-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:837,84,0:0,0,14,14
chr1	206644058	.	C	T	371.14	PASS	AC=2;AF=0.821;AN=2;DP=970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,22:23:54:488,54,0:1,0,18,4
chr1	206647742	.	A	G	3223.55	PASS	AC=2;AF=1;AN=2;DP=7149;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4676,459,0:0,0,89,64
chr1	206647787	.	T	C	3973.81	PASS	AC=2;AF=0.841;AN=2;DP=8262;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:5756,582,0:0,0,102,92
chr1	206648037	.	C	G	430.99	PASS	AC=1;AF=0.559;AN=2;DP=2121;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,31:75:99:816,0,1459:23,21,16,15
chr1	206648147	.	T	G	1037.18	PASS	AC=2;AF=0.625;AN=2;DP=1740;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant20-variant22-variant26-variant31-variant32-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3395,330,0:0,0,58,52
chr1	206648378	.	G	A	507.11	PASS	AC=2;AF=0.731;AN=2;DP=1118;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1137,104,0:0,0,9,26
chr1	206651107	.	G	A	957.61	PASS	AC=2;AF=0.58;AN=2;DP=2374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3083,323,0:0,0,58,50
chr1	206651350	.	C	T	255.77	PASS	AC=2;AF=0.58;AN=2;DP=1065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1339,120,0:0,0,14,26
chr1	206664396	.	A	T	997.06	PASS	AC=2;AF=0.841;AN=2;DP=1378;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:786,72,0:0,0,14,10
chr1	206664407	.	T	G	403.02	PASS	AC=2;AF=0.818;AN=2;DP=1488;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:751,69,0:0,0,12,11
chr1	206665896	.	C	G	2006.69	PASS	AC=2;AF=0.818;AN=2;DP=6417;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5791,507,0:0,0,71,98
chr1	206666734	.	T	G	390.62	PASS	AC=2;AF=0.571;AN=2;DP=1569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1796,177,0:0,0,25,34
chr1	206669465	.	C	T	1345.1	PASS	AC=1;AF=0.553;AN=2;DP=3132;MQ=60;set=variant2-variant3-variant4-variant5-variant11-variant15-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,77:169:99:1965,0,2426:54,38,49,28
chr1	206680983	.	A	C	648	PASS	AC=1;AF=0.795;AN=2;DP=3864;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,42:95:99:922,0,1248:28,25,20,22
chr1	206758077	.	T	A	2076.98	PASS	AC=2;AF=0.907;AN=2;DP=5030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4077,389,0:0,0,46,84
chr1	206760474	.	T	C	2081	PASS	AC=2;AF=0.898;AN=2;DP=3933;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4960,384,0:0,0,76,50
chr1	206760476	.	G	A	1323.15	PASS	AC=1;AF=0.619;AN=2;DP=1960;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant33-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,76:130:99:1782,0,1232:34,20,43,33
chr1	206760686	.	T	A	1918.59	PASS	AC=2;AF=0.714;AN=2;DP=2865;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:4173,331,0:0,0,52,58
chr1	206760694	.	T	C	1156.91	PASS	AC=1;AF=0.625;AN=2;DP=1914;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,55:102:99:1375,0,1171:20,27,27,28
chr1	206764782	.	G	A	107.99	PASS	AC=2;AF=0.909;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant15-variant19-variant21-variant32-variant33-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:100,9,0:0,0,3,0
chr1	206766819	.	AGAGC	A	614.93	PASS	AC=2;AF=0.726;AN=2;DP=600;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:75:1125,75,0:0,0,16,8
chr1	206766845	.	AGTGTGTGTGTGCGT	AGT,AGTGTGTGTGTGTGTGTGT,AGTGCGT,AGTGTGTGTGTGTGTGCGT,AGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGCGT,AGTGTGTGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGTGTGTGTGT	137.73	PASS	AC=1,1,0,0,0,0,0,0,0;AF=0.389,0.056,0.093,0.037,0.019,0.019,0.019,0.019,0.019;AN=2;DP=869;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant42-variant43	GT:DP:GQ:SB	1/2:42:99:0,0,25,17
chr1	206766857	.	C	A,T	674.11	PASS	AC=0,1;AF=0.417,0.333;AN=2;DP=160;set=variant10-variant13-variant29-variant15-variant32-variant36	GT:DP:GQ:SB	0/2:42:99:11,7,14,10
chr1	206770283	.	AC	A	367.94	PASS	AC=2;AF=0.727;AN=2;DP=514;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:622,60,0:0,0,17,3
chr1	206772194	.	ACT	A	592.73	PASS	AC=2;AF=0.721;AN=2;DP=521;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-filterInvariant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:744,51,0:0,0,15,2
chr1	206772753	.	A	G	1142.34	PASS	AC=2;AF=0.898;AN=2;DP=1460;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1140,114,0:0,0,24,14
chr1	206773659	.	A	G	3390.6	PASS	AC=2;AF=0.989;AN=2;DP=4048;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3551,341,0:0,0,52,62
chr1	206776097	.	G	A	521.9	PASS	AC=2;AF=0.721;AN=2;DP=641;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:731,60,0:0,0,14,6
chr1	206776200	.	C	T	2086.86	PASS	AC=2;AF=0.898;AN=2;DP=2432;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3612,250,0:0,0,54,27
chr1	206776203	.	T	C	2168.48	PASS	AC=2;AF=1;AN=2;DP=2586;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3636,253,0:0,0,55,29
chr1	206785978	.	C	T	216.42	PASS	AC=1;AF=0.591;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant16-variant19-variant20-variant26-variant27-variant30-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:91:91,0,357:3,9,1,3
chr1	206786004	.	T	A	153.05	PASS	AC=1;AF=0.62;AN=2;DP=251;MQ=60;set=variant2-variant3-filterInvariant4-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:56:280,0,56:1,2,2,8
chr1	206810946	.	C	T	1950.92	PASS	AC=1;AF=0.64;AN=2;DP=1001;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant27-variant28-variant30-variant32-variant34-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:622,0,508:15,2,15,4
chr1	206904119	.	T	G	249.5	PASS	AC=1;AF=0.5;AN=2;DP=122;FractionInformativeReads=1;MQ=60;set=variant9-filterInvariant15	GT:AD:DP:GQ:PL:SB	0/1:50,15:65:99:538,0,6854:42,8,0,15
chr1	206904124	.	A	G	258.53	PASS	AC=1;AF=0.5;AN=2;DP=122;MQ=60;set=variant9-filterInvariant15	GT:AD:DP:GQ:PL:SB	0/1:44,21:65:99:550,0,6518:38,6,0,21
chr1	206904131	.	T	G	37.88	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=217;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:43,21:64:99:593,0,5852:39,4,0,21
chr1	206904464	.	C	T	2702.02	PASS	AC=1;AF=0.611;AN=2;DP=4732;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,93:179:99:2268,0,2192:42,44,50,43
chr1	206906625	.	ATGTGTGTG	A,ATGTGTG,ATGTG	1004.43	PASS	AC=0,1,0;AF=0.026,0.303,0.382;AN=2;DP=2416;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:46:99:8,11,12,15
chr1	206907482	.	C	T	524.78	PASS	AC=1;AF=0.5;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant17-variant23-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:693,0,569:11,11,10,14
chr1	206940831	.	A	G	1100.13	PASS	AC=1;AF=0.6;AN=2;DP=1178;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:561,0,712:18,4,16,5
chr1	206941864	.	A	G	1917.54	PASS	AC=1;AF=0.6;AN=2;DP=4794;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,121:219:99:2916,0,2387:54,44,66,55
chr1	206943351	.	T	C	676.08	PASS	AC=2;AF=1;AN=2;DP=1548;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;ReadPosRankSum=1.648;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1946,183,0:0,0,20,41
chr1	206943968	.	C	A	113.43	PASS	AC=1;AF=0.5;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant10-variant11-variant14-variant15-variant17-variant31-variant32-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:203,0,298:7,2,6,2
chr1	206944233	.	A	G	1944.46	PASS	AC=2;AF=0.881;AN=2;DP=4630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3526,327,0:0,0,55,54
chr1	206944645	.	T	C	1490.29	PASS	AC=1;AF=0.805;AN=2;DP=1738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:998,0,733:21,6,25,8
chr1	206944861	.	A	C	3110.69	PASS	AC=1;AF=0.805;AN=2;DP=3412;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1190,0,832:13,23,14,32
chr1	206972072	.	C	T	302.52	PASS	AC=1;AF=0.694;AN=2;DP=915;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:761,0,456:13,7,17,11
chr1	207002356	.	CTT	CTTT,C,CT,CTTTT	142.41	PASS	AC=0,0,1,0;AF=0.206,0.044,0.25,0.029;AN=2;DP=1159;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/3:26:99:7,10,1,8
chr1	207007641	.	C	G	386.36	PASS	AC=2;AF=0.893;AN=2;DP=1151;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:626,63,0:0,0,12,9
chr1	207009910	.	T	C	680.3	PASS	AC=2;AF=0.884;AN=2;DP=664;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:745,60,0:0,0,16,4
chr1	207014472	.	A	C	3339.06	PASS	AC=2;AF=0.817;AN=2;DP=4418;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4400,405,0:0,0,61,74
chr1	207014776	.	C	T	449.91	PASS	AC=2;AF=0.884;AN=2;DP=649;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:455,36,0:0,0,1,11
chr1	207015957	.	T	C	2765.85	PASS	AC=2;AF=0.78;AN=2;DP=4199;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3216,326,0:0,0,49,60
chr1	207016225	.	A	G	364.32	PASS	AC=2;AF=0.813;AN=2;DP=1134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:648,69,0:0,0,10,13
chr1	207040577	.	G	A	428.05	PASS	AC=2;AF=0.793;AN=2;DP=673;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:615,45,0:0,0,15,0
chr1	207040659	.	G	A	1999.12	PASS	AC=2;AF=0.793;AN=2;DP=3019;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3385,290,0:0,0,73,24
chr1	207072959	.	C	T	1191.83	PASS	AC=1;AF=0.694;AN=2;DP=1374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:624,0,1005:5,26,8,16
chr1	207074905	.	T	C	5731.19	PASS	AC=1;AF=0.694;AN=2;DP=5798;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,82:202:99:2047,0,3179:59,61,46,36
chr1	207075171	.	T	C	863.28	PASS	AC=1;AF=0.671;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:367,0,285:5,4,6,7
chr1	207077645	.	T	C	528.73	PASS	AC=1;AF=0.661;AN=2;DP=636;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:137,0,336:9,2,4,1
chr1	207086969	.	A	G	2125.93	PASS	AC=1;AF=0.688;AN=2;DP=2508;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,52:98:99:1426,0,1330:34,12,36,16
chr1	207087435	.	C	T	3535.7	PASS	AC=1;AF=0.688;AN=2;DP=3240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,49:124:99:1220,0,2076:25,50,13,36
chr1	207102293	.	A	T	434.81	PASS	AC=1;AF=0.694;AN=2;DP=456;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:231,0,234:3,5,3,5
chr1	207108191	.	CAT	C	685.74	PASS	AC=1;AF=0.671;AN=2;DP=1697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:633,0,610:7,13,5,15
chr1	207108746	.	G	A	542.81	PASS	AC=1;AF=0.5;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant-variant15	GT:AD:DP:GQ:PL:SB	0/1:28,51:79:99:1288,0,803:21,7,32,19
chr1	207109116	.	C	T	2486.17	PASS	AC=1;AF=0.677;AN=2;DP=3943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,78:146:99:1916,0,1604:34,34,34,44
chr1	207109167	.	G	A	1747.03	PASS	AC=1;AF=0.677;AN=2;DP=2167;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,47:99:99:1124,0,1184:23,29,17,30
chr1	207195779	.	A	G	1803.47	PASS	AC=2;AF=0.989;AN=2;DP=4691;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3807,360,0:0,0,59,61
chr1	207218942	.	CA	C,CAA	1036.56	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=16172;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:440:99:192,168,47,33
chr1	207221409	.	T	C	11015.5	PASS	AC=2;AF=0.989;AN=2;DP=14304;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,364:364:99:11201,1089,0:0,0,182,182
chr1	207235659	.	A	G	116.82	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant23-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:270,0,262:5,3,5,2
chr1	207243851	.	A	G	383.6	PASS	AC=2;AF=0.782;AN=2;DP=1229;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1209,111,0:0,0,9,28
chr1	207245045	.	T	C	778.2	PASS	AC=2;AF=0.586;AN=2;DP=1218;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,45:46:99:1532,128,0:0,1,11,34
chr1	207245080	.	A	AT	237.4	PASS	AC=2;AF=0.604;AN=2;DP=517;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:530,57,0:0,0,5,14
chr1	207246004	.	A	G	412.7	PASS	AC=2;AF=0.586;AN=2;DP=1128;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1409,126,0:0,0,19,23
chr1	207247476	.	TTC	T	613.95	PASS	AC=2;AF=0.586;AN=2;DP=1081;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2005,138,0:0,0,21,25
chr1	207249855	.	G	A	1388.04	PASS	AC=2;AF=0.586;AN=2;DP=3113;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3954,347,0:0,0,53,63
chr1	207249974	.	A	ACTGACTGACAGACAGACTTTAGTGTCTGTGTG	784.89	PASS	AC=2;AF=0.586;AN=2;DP=3460;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:4630,325,0:0,0,48,41
chr1	207250300	.	G	A	4848.65	PASS	AC=2;AF=0.653;AN=2;DP=11947;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,390:390:99:11954,1167,0:0,0,166,224
chr1	207250456	.	C	T	1481.43	PASS	AC=2;AF=0.586;AN=2;DP=2229;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2734,237,0:0,0,33,46
chr1	207250570	.	A	G	1408.97	PASS	AC=2;AF=0.586;AN=2;DP=2937;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3607,302,0:0,0,60,41
chr1	207250631	.	A	G	2765.03	PASS	AC=2;AF=0.586;AN=2;DP=6010;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,257:257:99:8168,770,0:0,0,157,100
chr1	207253031	.	C	T	1387.12	PASS	AC=2;AF=0.671;AN=2;DP=2611;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2554,255,0:0,0,39,46
chr1	207253165	.	A	G	1656.89	PASS	AC=2;AF=0.703;AN=2;DP=1719;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1362,123,0:0,0,19,22
chr1	207253575	.	A	AT	7022.52	PASS	AC=2;AF=1;AN=2;DP=8224;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,228:229:99:7037,672,0:1,0,93,135
chr1	207254047	.	GT	G	3245.9	PASS	AC=2;AF=0.615;AN=2;DP=3145;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,147:148:99:4418,436,0:1,0,54,93
chr1	207262301	.	G	A	55.43	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant15	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:562,0,376:9,8,5,13
chr1	207262980	.	T	G	3268.09	PASS	AC=2;AF=0.636;AN=2;DP=3647;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4653,470,0:0,0,74,83
chr1	207263829	.	A	G	2177.9	PASS	AC=2;AF=0.633;AN=2;DP=2338;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,97:99:99:2772,247,0:1,1,40,57
chr1	207268779	.	A	G	3267.57	PASS	AC=2;AF=0.613;AN=2;DP=2252;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3073,240,0:0,0,13,67
chr1	207288897	.	T	C	1256.91	PASS	AC=2;AF=0.711;AN=2;DP=1401;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1826,165,0:0,0,14,41
chr1	207297680	.	T	C	2071.17	PASS	AC=1;AF=0.857;AN=2;DP=3864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,88:137:99:2211,0,1007:20,29,38,50
chr1	207314388	.	C	T	1721.86	PASS	AC=2;AF=0.647;AN=2;DP=758;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant31-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1466,144,0:0,0,30,18
chr1	207510289	.	T	C	1804.7	PASS	AC=2;AF=1;AN=2;DP=3402;FS=0;MQ=60;MQRankSum=-0.763;ReadPosRankSum=0.47;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2953,270,0:0,0,28,62
chr1	207512577	.	T	TTAA	97.61	PASS	AC=2;AF=1;AN=2;DP=182;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:27:396,27,0:0,0,7,0
chr1	207520788	.	G	A	442.16	PASS	AC=2;AF=0.652;AN=2;DP=355;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant12-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:511,42,0:0,0,11,3
chr1	207532861	.	CT	CTT,C,CTTT,CTTTT	210.84	PASS	AC=1,0,0,0;AF=0.284,0.027,0.135,0.122;AN=2;DP=1534;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:44:99:15,6,14,9
chr1	207643949	.	G	A	148.54	PASS	AC=2;AF=0.727;AN=2;DP=392;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:568,45,0:0,0,14,1
chr1	207653178	.	C	G	1114.45	PASS	AC=2;AF=0.672;AN=2;DP=1223;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1949,174,0:0,0,42,16
chr1	207653395	.	C	A	3076.73	PASS	AC=2;AF=0.826;AN=2;DP=3613;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3277,308,0:0,0,44,59
chr1	207662912	.	T	C	11102.8	PASS	AC=2;AF=0.909;AN=2;DP=12807;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,390:390:99:12448,1169,0:0,0,220,170
chr1	207663256	.	G	GT,GTT	971.36	PASS	AC=2,0;AF=0.886,0.011;AN=2;DP=1813;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:39:99:0,0,2,37
chr1	207669924	.	C	G	61.77	PASS	AC=2;AF=0.839;AN=2;DP=194;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:274,21,0:0,0,1,6
chr1	207679229	.	T	G	3711.52	PASS	AC=1;AF=0.565;AN=2;DP=2255;set=variant-variant2-variant3-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,53:108:99:1279,0,1464:37,18,31,22
chr1	207679307	.	A	G	5772.17	PASS	AC=1;AF=0.826;AN=2;DP=7129;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,76:170:99:1694,0,2249:58,36,45,31
chr1	207748793	.	A	G	3208.85	PASS	AC=1;AF=0.543;AN=2;DP=2006;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,39:105:99:996,0,1713:44,22,30,9
chr1	207753621	.	A	G	1784.73	PASS	AC=1;AF=0.545;AN=2;DP=1906;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,32:92:99:969,0,1885:28,32,15,17
chr1	207757936	.	A	G	819.82	PASS	AC=1;AF=0.542;AN=2;DP=902;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:663,0,586:18,6,19,5
chr1	207758232	.	A	G	2365.95	PASS	AC=1;AF=0.542;AN=2;DP=4571;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,133:260:99:3447,0,3372:53,74,48,85
chr1	207782916	.	A	T	3033.78	PASS	AC=2;AF=0.989;AN=2;DP=5205;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4517,452,0:0,0,64,87
chr1	207782931	.	A	G	2855.21	PASS	AC=1;AF=0.542;AN=2;DP=2589;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,57:131:99:1532,0,1689:34,40,22,35
chr1	207784968	.	A	G	4058.84	PASS	AC=1;AF=0.802;AN=2;DP=4787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1301,0,1626:34,33,31,27
chr1	207790088	.	C	G	4503.12	PASS	AC=1;AF=0.543;AN=2;DP=5730;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,122:267:99:2803,0,3708:70,75,62,60
chr1	207795320	.	A	G	2790.75	PASS	AC=1;AF=0.814;AN=2;DP=3931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,63:107:99:1534,0,1069:23,21,33,30
chr1	207818719	.	G	A	2619.11	PASS	AC=1;AF=0.6;AN=2;DP=5461;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant34-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:141,103:244:99:2368,0,3808:56,85,46,57
chr1	207851611	.	A	G	1860.34	PASS	AC=1;AF=0.606;AN=2;DP=5221;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,118:201:99:2879,0,1999:38,45,52,66
chr1	207851760	.	G	A	397.91	PASS	AC=1;AF=0.596;AN=2;DP=838;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:326,0,609:4,16,3,10
chr1	207857158	.	T	C	1485.58	PASS	AC=1;AF=0.6;AN=2;DP=2470;set=variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant34-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,69:123:99:1774,0,1417:39,15,45,24
chr1	207888626	.	C	T	1333.96	PASS	AC=1;AF=0.55;AN=2;DP=1699;FractionInformativeReads=1;set=variant-variant4-variant7-variant9-variant10-variant11-variant15-variant17-variant20-variant21-variant27-variant29-variant30-variant31-variant33-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,48:85:99:1232,0,936:25,12,24,24
chr1	207888704	.	T	C	1483.34	PASS	AC=1;AF=0.55;AN=2;DP=2191;set=variant-variant4-variant7-variant9-variant10-variant11-variant15-variant17-variant20-variant21-variant27-variant29-variant30-variant31-variant33-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1663,0,1507:33,32,31,35
chr1	207888760	.	C	T	1408.81	PASS	AC=2;AF=0.65;AN=2;DP=3210;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:3974,397,0:0,0,63,70
chr1	207890866	.	T	C	1657.24	PASS	AC=2;AF=0.65;AN=2;DP=6202;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:6790,685,0:0,0,135,94
chr1	207912179	.	G	C	983.26	PASS	AC=2;AF=0.625;AN=2;DP=3203;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4198,397,0:0,0,84,49
chr1	207912207	.	A	G	982.88	PASS	AC=1;AF=0.6;AN=2;DP=1947;set=variant-variant2-variant3-variant8-variant10-variant12-variant13-variant14-variant15-variant19-variant22-variant30-variant32-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,75:168:99:1582,0,2305:50,43,42,33
chr1	207934849	.	A	G	373.41	PASS	AC=1;AF=0.531;AN=2;DP=856;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant15-variant20-variant21-variant27-variant29-variant30-variant31-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,30:65:99:808,0,872:10,25,8,22
chr1	207941191	.	G	T	915.7	PASS	AC=1;AF=0.826;AN=2;DP=956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:198,0,136:1,3,2,5
chr1	207956559	.	G	A	61.77	PASS	AC=2;AF=0.69;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant21-variant22-variant27-variant30-variant31-variant33-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:309,24,0:0,0,7,1
chr1	207959070	.	T	C	960.24	PASS	AC=1;AF=0.533;AN=2;DP=1048;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant15-variant20-variant21-variant27-variant29-variant30-variant31-variant33-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,38:93:99:844,0,1344:23,32,13,25
chr1	207959122	.	CTTTT	C,CT,CTTT	763.59	PASS	AC=2,0,0;AF=0.511,0.375,0.114;AN=2;DP=1566;FS=0;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:42:99:0,0,10,32
chr1	207959136	.	T	TAAA,TAA	763.34	PASS	AC=2,0;AF=0.405,0.5;AN=2;DP=1236;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant2-variant30-variant31-variant32-variant34-variant35-variant5-variant38-variant33-variant40-variant36-variant42-variant39-variant43-variant41-variant44	GT:DP:GQ:SB	1/1:42:99:0,0,10,32
chr1	207967719	.	T	C	1271.58	PASS	AC=2;AF=0.625;AN=2;DP=1648;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2736,207,0:0,0,39,30
chr1	207975949	.	T	C	872.75	PASS	AC=1;AF=0.531;AN=2;DP=1243;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant15-variant20-variant21-variant27-variant29-variant30-variant31-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,51:92:99:1317,0,983:17,24,21,30
chr1	207992546	.	G	A	515.38	PASS	AC=2;AF=0.63;AN=2;DP=1435;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant20-variant21-variant22-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1744,173,0:0,0,21,37
chr1	208040927	.	G	A	618.12	PASS	AC=1;AF=0.5;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:1240,0,1307:31,20,30,17
chr1	208041366	.	T	C	471.79	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:829,0,676:10,17,20,18
chr1	208060295	.	T	C	635.1	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:33,37:70:99:972,0,785:15,18,19,18
chr1	208062260	.	T	C	906.75	PASS	AC=1;AF=0.716;AN=2;DP=2033;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,49:84:99:1149,0,924:11,24,18,31
chr1	208063067	.	G	A	1144.4	PASS	AC=1;AF=0.577;AN=2;DP=1951;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant34-variant35-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,57:110:99:1435,0,1476:33,20,32,25
chr1	208063100	.	G	GA	503.26	PASS	AC=1;AF=0.653;AN=2;DP=2874;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:839,0,1061:30,24,27,20
chr1	208063466	.	A	T	852.56	PASS	AC=1;AF=0.705;AN=2;DP=2583;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:955,0,1126:13,28,12,24
chr1	208063808	.	G	A	173.01	PASS	AC=1;AF=0.607;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:581,0,718:10,17,10,15
chr1	208071105	.	A	G	405.4	PASS	AC=1;AF=0.636;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant13-variant14-variant15-variant22-variant32-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:194,0,189:1,5,1,5
chr1	208195516	.	A	C	427.45	PASS	AC=2;AF=0.988;AN=2;DP=358;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.747;ReadPosRankSum=0.747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:309,24,0:0,0,7,1
chr1	208195981	.	C	T	203.17	PASS	AC=1;AF=0.724;AN=2;DP=1765;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:853,0,532:10,11,16,16
chr1	208196081	.	T	C	777.75	PASS	AC=2;AF=0.989;AN=2;DP=2001;MQ=60;MQRankSum=-1.275;ReadPosRankSum=-0.481;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1507,141,0:0,0,24,23
chr1	208197785	.	C	T	1112.94	PASS	AC=1;AF=0.538;AN=2;DP=1000;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant15-variant16-variant17-variant22-variant27-variant29-variant31-variant32-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:1058,0,1076:23,16,20,19
chr1	208197882	.	G	C	2425.26	PASS	AC=2;AF=1;AN=2;DP=4057;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3306,318,0:0,0,51,55
chr1	208198161	.	C	T	138.93	PASS	AC=1;AF=0.711;AN=2;DP=1762;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,37:55:99:990,0,443:9,9,13,24
chr1	208199100	.	T	A	414.32	PASS	AC=1;AF=0.724;AN=2;DP=2926;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,60:119:99:1554,0,1559:26,33,25,35
chr1	208199997	.	C	CT,CTTT,CTT	107.64	PASS	AC=1,0,0;AF=0.447,0.026,0.026;AN=2;DP=1339;set=filterInvariant-variant3-variant4-variant5-filterInvariant7-variant8-variant9-variant15-filterInvariant16-variant18-variant22-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant31-filterInvariant32-filterInvariant41	GT:DP:GQ:SB	0/1:90:99:34,30,18,8
chr1	208199998	.	T	TC,TCTC	1400.58	PASS	AC=1,0;AF=0.6,0.014;AN=2;DP=2326;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:96:99:33,21,23,19
chr1	208199999	.	T	TC	429.07	PASS	AC=1;AF=0.5;AN=2;DP=2164;set=variant-variant2-variant3-variant4-variant6-variant7-filterInvariant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant30-variant31-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,25:90:99:327,0,2767:40,25,13,12
chr1	208200127	.	T	A	5012.99	PASS	AC=2;AF=1;AN=2;DP=5475;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3736,367,0:0,0,52,71
chr1	208200737	.	C	G	1361.05	PASS	AC=1;AF=0.542;AN=2;DP=1074;MQ=60;set=variant3-variant15-variant16-variant17-variant22-variant27-variant29-variant31-variant32-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1276,0,1468:27,32,23,30
chr1	208204794	.	CTGTT	C	295.48	PASS	AC=1;AF=0.615;AN=2;DP=1212;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:929,0,1492:17,9,17,7
chr1	208206946	.	C	G	266.86	PASS	AC=1;AF=0.621;AN=2;DP=700;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:297,0,355:6,10,6,8
chr1	208207045	.	T	C	103.54	PASS	AC=2;AF=1;AN=2;DP=216;FS=0;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:263,21,0:0,0,2,5
chr1	208207839	.	G	A	445.23	PASS	AC=1;AF=0.737;AN=2;DP=2862;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,40:87:99:820,0,1197:27,20,23,17
chr1	208208034	.	G	C	624.35	PASS	AC=1;AF=0.636;AN=2;DP=1922;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:780,0,725:10,20,15,20
chr1	208208124	.	C	A	160.2	PASS	AC=1;AF=0.743;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:432,0,178:1,5,1,11
chr1	208211887	.	T	C	506.52	PASS	AC=2;AF=0.977;AN=2;DP=1357;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1545,137,0:0,0,19,27
chr1	208212397	.	A	G	199.37	PASS	AC=1;AF=0.615;AN=2;DP=1211;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,25:63:99:730,0,991:12,26,7,18
chr1	208213125	.	A	G	1985.41	PASS	AC=2;AF=1;AN=2;DP=5111;FS=0;MQ=60;MQRankSum=1.254;ReadPosRankSum=1.692;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3417,344,0:0,0,58,57
chr1	208219164	.	A	C	1027.16	PASS	AC=1;AF=0.86;AN=2;DP=2027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,44:69:99:1340,0,586:18,7,36,8
chr1	208224955	.	G	C	118.69	PASS	AC=1;AF=0.689;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:331,0,268:1,7,2,9
chr1	208224957	.	C	T	414.54	PASS	AC=2;AF=1;AN=2;DP=720;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:57:815,57,0:0,0,3,14
chr1	208225674	.	G	A	104.36	PASS	AC=1;AF=0.5;AN=2;DP=46;FractionInformativeReads=1;MQ=60;set=variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:133,0,495:11,2,5,0
chr1	208225909	.	G	A	1310.31	PASS	AC=1;AF=0.577;AN=2;DP=1307;MQ=60;set=variant2-variant3-variant5-variant15-variant17-variant22-variant27-variant29-variant31-variant32-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:60,59:119:99:1448,0,1600:21,39,22,37
chr1	208252489	.	T	C	1690.36	PASS	AC=1;AF=0.686;AN=2;DP=3655;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,67:120:99:1700,0,1318:35,18,36,31
chr1	208255877	.	T	C	1130.69	PASS	AC=2;AF=0.797;AN=2;DP=4054;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4157,386,0:0,0,40,89
chr1	208276399	.	C	CCTCT	3892.76	PASS	AC=2;AF=1;AN=2;DP=3778;FS=0;MQ=60;MQRankSum=-1.123;ReadPosRankSum=-0.961;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3482,235,0:0,0,51,25
chr1	208390086	.	G	C	1275.92	PASS	AC=1;AF=0.63;AN=2;DP=4134;MQ=60;set=variant2-variant3-variant7-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant29-variant30-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,86:199:99:2163,0,2961:65,48,48,38
chr1	208390469	.	C	T	1834.23	PASS	AC=1;AF=0.528;AN=2;DP=5489;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant20-variant22-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:187,207:394:99:5242,0,4727:98,89,106,101
chr1	208391254	.	C	T	1870.51	PASS	AC=1;AF=0.63;AN=2;DP=3084;MQ=60;set=variant2-variant3-variant7-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant29-variant30-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,66:123:99:1777,0,1532:21,36,25,41
chr1	208417649	.	TGGCGGC	T	772.06	PASS	AC=2;AF=0.989;AN=2;DP=1523;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:98:1444,98,0:0,0,9,23
chr1	209603996	.	A	G	377.92	PASS	AC=1;AF=0.679;AN=2;DP=1987;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:728,0,985:18,21,11,15
chr1	209605636	.	TAGCAGCAGCAGCAGCAGC	TAGCAGC,T	1080.09	PASS	AC=1,0;AF=0.667,0.013;AN=2;DP=3470;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:75:99:18,33,7,17
chr1	209781417	.	TACAC	T,TACACAC,TAC,TACACACAC	277.97	PASS	AC=1,0,0,0;AF=0.455,0.136,0.015,0.015;AN=2;DP=658;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:7:99:0,3,0,4
chr1	209782343	.	A	G	2134.61	PASS	AC=1;AF=0.569;AN=2;DP=2345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1038,0,1394:35,21,25,21
chr1	209784663	.	A	C	46.72	PASS	AC=1;AF=0.703;AN=2;DP=761;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:311,0,228:7,1,8,1
chr1	209785957	.	T	G	406.24	PASS	AC=1;AF=0.703;AN=2;DP=1378;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:658,0,543:16,4,18,9
chr1	209786078	.	G	A	1315.01	PASS	AC=1;AF=0.689;AN=2;DP=5313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,73:175:99:1681,0,2545:50,52,41,32
chr1	209788213	.	T	C	242.87	PASS	AC=1;AF=0.729;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:200,0,241:6,3,6,2
chr1	209788514	.	G	A	3037.72	PASS	AC=1;AF=0.559;AN=2;DP=1519;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant14-variant15-variant23-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,73:127:99:1908,0,1274:28,26,33,40
chr1	209792015	.	A	AC	2956.09	PASS	AC=2;AF=0.966;AN=2;DP=5500;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:5500,445,0:0,0,63,85
chr1	209798771	.	G	A	337.35	PASS	AC=1;AF=0.636;AN=2;DP=941;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,29:43:99:712,0,371:12,2,18,11
chr1	209799253	.	A	G	4514.61	PASS	AC=1;AF=0.833;AN=2;DP=5487;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,73:138:99:1837,0,1601:29,36,35,38
chr1	209804095	.	G	A	1464.18	PASS	AC=1;AF=0.909;AN=2;DP=2463;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:592,0,1122:10,26,5,16
chr1	209811829	.	A	T	597.05	PASS	AC=1;AF=0.525;AN=2;DP=1339;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant25-variant27-variant31-variant32-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1250,0,1228:33,12,31,19
chr1	209812063	.	T	C	1441.66	PASS	AC=1;AF=0.854;AN=2;DP=2041;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:553,0,714:12,18,9,14
chr1	209823354	.	G	A	310.98	PASS	AC=1;AF=0.526;AN=2;DP=1534;MQ=60;set=variant-variant2-variant5-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant25-variant26-variant27-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,34:82:99:895,0,1227:21,27,16,18
chr1	209824099	.	G	C	56.69	PASS	AC=1;AF=0.528;AN=2;DP=229;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant25-variant26-variant27-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:98:268,0,98:3,0,7,0
chr1	209848696	.	G	C	464.08	PASS	AC=2;AF=0.977;AN=2;DP=1161;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:976,87,0:0,0,12,17
chr1	209849002	.	T	C	1070.58	PASS	AC=1;AF=0.782;AN=2;DP=6004;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,100:182:99:2693,0,1947:45,37,56,44
chr1	209849399	.	AG	A	1022.88	PASS	AC=1;AF=0.782;AN=2;DP=3552;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,49:112:99:1608,0,2172:32,31,20,29
chr1	209849406	.	T	G	3029.64	PASS	AC=2;AF=0.977;AN=2;DP=3978;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:4150,331,0:0,0,52,58
chr1	209849714	.	TA	T	1022.09	PASS	AC=2;AF=0.977;AN=2;DP=1925;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1465,141,0:0,0,25,22
chr1	209929299	.	G	A	61.77	PASS	AC=2;AF=0.851;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:226,18,0:0,0,5,1
chr1	209932055	.	C	T	114.41	PASS	AC=1;AF=0.542;AN=2;DP=370;MQ=60;set=variant-variant3-variant12-variant15-variant16-variant19-variant21-variant26-variant33-variant34-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:304,0,212:5,4,7,6
chr1	209950681	.	T	C	1061.93	PASS	AC=2;AF=0.727;AN=2;DP=1353;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1915,165,0:0,0,28,27
chr1	209950760	.	C	G	1307.48	PASS	AC=2;AF=0.915;AN=2;DP=2969;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3001,290,0:0,0,51,46
chr1	209952865	.	C	G	10352.5	PASS	AC=1;AF=0.654;AN=2;DP=6677;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:136,162:298:99:4212,0,3112:69,67,83,79
chr1	209953706	.	C	T	97.67	PASS	AC=1;AF=0.714;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant20-variant25-variant30-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,192:5,0,2,1
chr1	209955848	.	A	C	1427.36	PASS	AC=1;AF=0.648;AN=2;DP=1318;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,36:65:99:934,0,865:13,16,17,19
chr1	209959872	.	G	A	201.22	PASS	AC=2;AF=0.934;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:410,39,0:0,0,5,8
chr1	209960922	.	A	C	761.44	PASS	AC=1;AF=0.648;AN=2;DP=859;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:431,0,379:10,7,8,9
chr1	209965587	.	G	C,A	1695.01	PASS	AC=1,0;AF=0.629,0.016;AN=2;DP=3801;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:181:99:59,37,50,35
chr1	209968319	.	A	C	637.11	PASS	AC=1;AF=0.733;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:231,0,100:3,0,5,3
chr1	209968411	.	C	T	360.92	PASS	AC=1;AF=0.6;AN=2;DP=435;set=variant9-variant15-variant20-variant22-variant25-variant29-variant30-variant32-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:648,0,883:20,12,21,4
chr1	209968684	.	C	A	2514.88	PASS	AC=1;AF=0.65;AN=2;DP=4482;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,62:160:99:1600,0,2644:41,57,21,41
chr1	209969902	.	G	C	256.35	PASS	AC=1;AF=0.65;AN=2;DP=829;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:741,0,338:4,10,5,18
chr1	209974528	.	CAAAA	CAA,CAAAAA,CA,CAAA,C,CAAAAAAA	120.24	PASS	AC=0,0,0,1,0,0;AF=0.125,0.141,0.016,0.188,0.016,0.016;AN=2;DP=1581;set=variant-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-filterInvariant34-filterInvariant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:37:99:11,6,14,6
chr1	209975386	.	A	G	951.79	PASS	AC=1;AF=0.648;AN=2;DP=993;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:610,0,606:10,14,11,14
chr1	210001233	.	C	T	280.3	PASS	AC=2;AF=0.893;AN=2;DP=532;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:50:621,50,0:0,0,15,2
chr1	210001543	.	A	T	2029.75	PASS	AC=1;AF=0.545;AN=2;DP=1534;MQ=60;set=variant9-variant15-variant20-variant22-variant24-variant25-variant29-variant30-variant32-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:86,70:156:99:1733,0,2127:34,52,28,42
chr1	210001586	.	A	G	2547.29	PASS	AC=1;AF=0.806;AN=2;DP=2732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,53:90:99:1371,0,1010:12,25,20,33
chr1	210003388	.	A	C	1999.96	PASS	AC=1;AF=0.635;AN=2;DP=1354;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,43:64:99:1105,0,463:14,7,27,16
chr1	210003402	.	T	C	2230.48	PASS	AC=2;AF=0.875;AN=2;DP=2486;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2301,226,0:0,0,48,28
chr1	210004199	.	C	G	3113.15	PASS	AC=2;AF=0.875;AN=2;DP=4499;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4986,461,0:0,0,93,61
chr1	210006437	.	G	A	196.77	PASS	AC=2;AF=0.895;AN=2;DP=374;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,9,0
chr1	210006438	.	C	T	196.77	PASS	AC=2;AF=0.895;AN=2;DP=381;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,9,0
chr1	210006603	.	C	T	5033.01	PASS	AC=2;AF=0.875;AN=2;DP=5600;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4226,413,0:0,0,77,61
chr1	210008367	.	C	G	1595.66	PASS	AC=2;AF=0.875;AN=2;DP=2335;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2631,207,0:0,0,46,23
chr1	210008374	.	C	T	1122.91	PASS	AC=1;AF=0.545;AN=2;DP=720;MQ=60;set=variant9-variant15-variant20-variant22-variant24-variant25-variant29-variant30-variant32-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:863,0,1100:26,14,23,13
chr1	210008673	.	T	G	874.71	PASS	AC=2;AF=0.875;AN=2;DP=991;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1119,90,0:0,0,6,24
chr1	210012102	.	A	G	2630.04	PASS	AC=2;AF=0.875;AN=2;DP=3097;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3444,313,0:0,0,62,43
chr1	210015568	.	GCT	G	2874.4	PASS	AC=2;AF=0.893;AN=2;DP=2748;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2707,184,0:0,0,36,25
chr1	210026097	.	CT	C	1184	PASS	AC=1;AF=0.545;AN=2;DP=1070;MQ=60;set=variant9-variant15-variant20-variant22-variant24-variant25-variant29-variant30-variant32-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:66,77:143:99:2678,0,2240:35,31,40,37
chr1	210026596	.	C	T	4246.21	PASS	AC=1;AF=0.635;AN=2;DP=3768;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,88:174:99:2201,0,2028:34,52,32,56
chr1	210027026	.	G	A	331.77	PASS	AC=2;AF=0.694;AN=2;DP=816;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:973,95,0:0,0,19,13
chr1	210027965	.	G	A	684.04	PASS	AC=1;AF=0.591;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant20-variant22-variant24-variant25-variant29-variant30-variant32-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:400,0,736:17,11,8,9
chr1	210111733	.	G	A	1263.21	PASS	AC=1;AF=0.676;AN=2;DP=3932;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,80:164:99:1924,0,2487:21,63,22,58
chr1	210139069	.	G	A	149.75	PASS	AC=1;AF=0.867;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant9-variant10-variant13-variant14-variant15-variant17-variant23-variant25-variant27-variant31-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:73:73,0,119:2,1,2,1
chr1	210267893	.	TGAA	T	1980.72	PASS	AC=1;AF=0.545;AN=2;DP=1371;MQ=60;set=variant9-variant11-variant15-variant19-variant20-variant23-variant24-variant25-variant30-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:68,75:143:99:2925,0,3112:26,42,31,44
chr1	210334081	.	T	C	498.45	PASS	AC=1;AF=0.55;AN=2;DP=634;MQ=60;set=variant9-variant15-variant19-variant20-variant23-variant24-variant25-variant30-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1078,0,1050:26,15,25,16
chr1	210336584	.	CTAAT	C	9239.14	PASS	AC=1;AF=0.563;AN=2;DP=6650;MQ=60;set=variant-variant3-variant9-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant25-variant27-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:268,241:509:99:9131,0,13322:129,139,114,127
chr1	210336953	.	A	T	3646.25	PASS	AC=1;AF=0.5;AN=2;DP=324;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.759;QD=11.25;ReadPosRankSum=1.585;SOR=0.708;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:171,153:324:99:3674,0,4199:91,80,82,71
chr1	210337043	.	A	G	3081.29	PASS	AC=2;AF=0.845;AN=2;DP=11327;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,337:337:99:10578,1010,0:0,0,168,169
chr1	210337096	.	CAG	C	5199.13	PASS	AC=1;AF=0.545;AN=2;DP=3204;MQ=60;set=variant-variant3-variant12-variant15-variant16-variant21-variant22-variant25-variant27-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:205,142:347:99:5283,0,8118:99,106,63,79
chr1	210337691	.	G	A	630.72	PASS	AC=1;AF=0.563;AN=2;DP=558;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant9-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant25-variant27-variant33-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:740,0,596:8,15,5,20
chr1	210337726	.	G	A	396.21	PASS	AC=1;AF=0.55;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant19-variant20-variant23-variant24-variant25-variant30-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:354,0,420:1,11,0,10
chr1	210416438	.	CA	CAA,CAAA,CAAAA,C,CAAAAA,CAAAAAAAAAA	281	PASS	AC=1,0,0,0,0,0;AF=0.2,0.183,0.083,0.033,0.017,0.017;AN=2;DP=4359;set=filterInvariant-filterInvariant3-filterInvariant4-variant6-variant7-variant8-variant10-variant11-variant14-filterInvariant15-filterInvariant16-variant17-filterInvariant19-variant21-filterInvariant22-variant24-filterInvariant25-variant26-variant30-variant31-variant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:110:99:55,16,24,15
chr1	210522080	.	CGT	CGTGTGTGT,CGTGTGTGTGTGT,CGTGTGT,C,CGTGT,CGTGTGTGTGTGTGT,CGTGTGTGTGT	361.23	PASS	AC=0,0,0,1,0,0,0;AF=0.244,0.116,0.209,0.035,0.035,0.035,0.081;AN=2;DP=888;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:27:99:15,5,7,0
chr1	210536078	.	C	G	1437.46	PASS	AC=1;AF=0.821;AN=2;DP=3932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,46:123:99:1116,0,1985:47,30,29,17
chr1	210577873	.	G	C	867.29	PASS	AC=1;AF=0.802;AN=2;DP=3655;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,60:99:99:1585,0,872:23,16,35,25
chr1	210591742	.	TG	T	1102.63	PASS	AC=1;AF=0.689;AN=2;DP=3812;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,49:110:99:1197,0,1579:13,48,9,40
chr1	210686570	.	A	G	1091.1	PASS	AC=1;AF=0.793;AN=2;DP=3085;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,53:98:99:1110,0,989:20,25,25,28
chr1	210761462	.	G	C	857.13	PASS	AC=2;AF=1;AN=2;DP=1528;FS=0;MQ=60;MQRankSum=1.22;ReadPosRankSum=0.835;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1499,135,0:0,0,14,31
chr1	210804319	.	T	C	163.68	PASS	AC=1;AF=0.6;AN=2;DP=190;MQ=60;set=variant2-variant11-variant15-variant16-variant18-variant21-variant22-variant26-variant30-variant36	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:320,0,315:9,2,8,5
chr1	210847514	.	A	T	945.18	PASS	AC=2;AF=0.718;AN=2;DP=2940;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3019,294,0:0,0,57,41
chr1	210848224	.	A	G	1093.12	PASS	AC=2;AF=0.86;AN=2;DP=1825;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1624,153,0:0,0,27,24
chr1	210848807	.	AT	A,ATTT,ATT	2119.3	PASS	AC=2,0,0;AF=0.619,0.048,0.083;AN=2;DP=11151;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:301:99:12,7,121,161
chr1	210856585	.	G	T	3012.75	PASS	AC=2;AF=0.86;AN=2;DP=3428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2814,257,0:0,0,53,33
chr1	210857457	.	A	G	1782.09	PASS	AC=2;AF=0.833;AN=2;DP=2499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2408,246,0:0,0,31,51
chr1	211276828	.	C	T	1363.11	PASS	AC=2;AF=0.565;AN=2;DP=2127;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant26-variant28-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3009,273,0:0,0,47,44
chr1	211280724	.	TAA	TA,T,TAAA	817.36	PASS	AC=0,2,0;AF=0.432,0.351,0.027;AN=2;DP=3797;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:105:99:0,0,38,67
chr1	211380444	.	G	T	1536.01	PASS	AC=1;AF=0.583;AN=2;DP=489;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:1381,0,986:17,9,22,13
chr1	211380445	.	C	T	1536.01	PASS	AC=1;AF=0.583;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:1381,0,986:17,9,22,13
chr1	211380500	.	G	C	762.22	PASS	AC=1;AF=0.5;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant15-variant31-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,41:109:99:965,0,1700:40,28,25,16
chr1	211380578	.	A	G	1244.83	PASS	AC=1;AF=0.5;AN=2;DP=766;MQ=60;set=variant2-variant8-variant15-variant31-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,66:151:99:1695,0,1871:42,43,37,29
chr1	211380770	.	T	C	855.89	PASS	AC=2;AF=0.656;AN=2;DP=6197;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,230:230:99:7139,689,0:0,0,133,97
chr1	211444382	.	G	A	189.86	PASS	AC=1;AF=0.605;AN=2;DP=194;FractionInformativeReads=1;set=variant-variant7-variant9-variant10-variant11-variant15-variant17-variant20-variant22-variant24-variant26-variant28-variant30-variant34-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,169:5,1,4,0
chr1	211447435	.	CT	C	191.23	PASS	AC=2;AF=0.964;AN=2;DP=351;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:459,48,0:0,0,14,2
chr1	211447625	.	G	A	1720.99	PASS	AC=1;AF=0.735;AN=2;DP=5102;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,116:197:99:2788,0,1849:38,43,62,54
chr1	211451393	.	TATC	T	67.63	PASS	AC=1;AF=0.6;AN=2;DP=235;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant11-variant15-variant17-variant22-variant24-variant26-variant28-variant30-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:303,0,416:9,0,8,0
chr1	211452529	.	TAA	TA,T	673.3	PASS	AC=2,0;AF=0.989,0.011;AN=2;DP=1044;set=Intersection	GT:DP:GQ:SB	1/1:16:48:0,0,14,2
chr1	211452678	.	G	A	1120.04	PASS	AC=1;AF=0.735;AN=2;DP=2628;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1249,0,821:17,21,21,28
chr1	211452728	.	G	A	987.98	PASS	AC=1;AF=0.735;AN=2;DP=1402;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:585,0,658:8,16,8,15
chr1	211487347	.	GT	G	3393.26	PASS	AC=1;AF=0.735;AN=2;DP=6558;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,126:235:99:3992,0,3341:53,56,55,71
chr1	211488076	.	A	G	15717.5	PASS	AC=2;AF=0.977;AN=2;DP=16649;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,446:446:99:14623,1337,0:0,0,216,230
chr1	211488538	.	C	A	22314.8	PASS	AC=2;AF=0.977;AN=2;DP=28584;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,809:809:99:24111,2421,0:0,0,411,398
chr1	211489187	.	T	G	7192.61	PASS	AC=2;AF=0.977;AN=2;DP=9413;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7250,719,0:0,0,122,118
chr1	211527609	.	C	A	895.41	PASS	AC=2;AF=1;AN=2;DP=701;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:451,36,0:0,0,10,2
chr1	211533990	.	A	G	973	PASS	AC=1;AF=0.542;AN=2;DP=930;MQ=60;set=variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,58:121:99:1338,0,1415:36,27,34,24
chr1	211545442	.	CTT	C,CT	706.29	PASS	AC=0,1;AF=0.013,0.65;AN=2;DP=1426;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:51:99:20,9,16,6
chr1	211546501	.	T	A	1026.15	PASS	AC=1;AF=0.545;AN=2;DP=1303;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:95,69:164:99:1579,0,2277:45,50,29,40
chr1	211548387	.	T	G	632.47	PASS	AC=1;AF=0.545;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:524,0,624:3,15,0,14
chr1	211650795	.	CA	C,CAA	53.15	PASS	AC=1,0;AF=0.483,0.05;AN=2;DP=1539;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-filterInvariant17-variant24-variant25-variant26-variant28-variant33-variant34-variant36-filterInvariant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:71:82:43,15,10,3
chr1	211651068	.	C	T	4818.95	PASS	AC=1;AF=0.5;AN=2;DP=386;FS=12.922;FractionInformativeReads=1;MQ=60;MQRankSum=1.923;QD=12.48;ReadPosRankSum=0.551;SOR=1.187;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:198,188:386:99:4847,0,5077:96,102,72,116
chr1	211665298	.	A	AG	215.16	PASS	AC=2;AF=0.797;AN=2;DP=581;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:60:800,60,0:0,0,9,10
chr1	211665390	.	GGTGTGTGTGTGT	G,GGTGTGTGTGTGTGT,GGTGTGTGTGT,GGTGT,GGTGTGT,GGTGTGTGT	215.66	PASS	AC=0,0,1,0,0,0;AF=0.147,0.015,0.324,0.206,0.029,0.044;AN=2;DP=426;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:10:21:1,1,5,3
chr1	211666218	.	A	G	566.71	PASS	AC=2;AF=0.677;AN=2;DP=1609;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1785,174,0:0,0,27,31
chr1	211916895	.	A	AT	3311.45	PASS	AC=1;AF=0.942;AN=2;DP=3605;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,23:88:99:436,0,1722:35,30,14,9
chr1	211920710	.	A	T	4315.48	PASS	AC=1;AF=0.5;AN=2;DP=1692;MQ=60;set=variant4-variant13-variant15-variant28-variant38	GT:AD:DP:GQ:PL:SB	0/1:209,212:421:99:5108,0,4885:115,94,125,87
chr1	211921767	.	C	T	1604.49	PASS	AC=1;AF=0.617;AN=2;DP=1727;MQ=60;set=variant-variant2-variant5-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:912,0,957:14,26,11,24
chr1	211922355	.	C	T	4414.43	PASS	AC=1;AF=0.617;AN=2;DP=4454;MQ=60;set=variant-variant2-variant5-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,80:152:99:1927,0,1862:36,36,38,42
chr1	212004100	.	C	G	157.42	PASS	AC=1;AF=0.667;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:176,0,111:2,2,1,5
chr1	212113995	.	G	A	3747.04	PASS	AC=2;AF=0.762;AN=2;DP=6063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:3731,410,0:0,0,54,83
chr1	212114662	.	A	G	3991.23	PASS	AC=1;AF=0.641;AN=2;DP=2845;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1874,0,4004:22,32,22,27
chr1	212114663	.	G	A	3991.23	PASS	AC=1;AF=0.641;AN=2;DP=2811;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,48:102:99:1868,0,4048:22,32,21,27
chr1	212114666	.	C	G	3841.77	PASS	AC=1;AF=0.641;AN=2;DP=2764;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,48:100:99:1856,0,3954:19,33,21,27
chr1	212118366	.	A	G	420.32	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant28-variant38	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:756,0,578:1,15,3,19
chr1	212139896	.	C	T	360.07	PASS	AC=1;AF=0.5;AN=2;DP=103;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant28-variant38	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:381,0,458:3,12,5,9
chr1	212142054	.	GA	G	531.24	PASS	AC=1;AF=0.686;AN=2;DP=1549;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-filterInvariant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:427,0,546:8,17,4,19
chr1	212142055	.	A	G	333.9	PASS	AC=1;AF=0.5;AN=2;DP=189;MQ=60;set=variant13-variant15-variant28-variant38	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:446,0,833:6,23,7,16
chr1	212209367	.	T	TC	489.23	PASS	AC=1;AF=0.641;AN=2;DP=968;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:412,0,448:0,15,2,12
chr1	212217971	.	C	CTT	1576.82	PASS	AC=2;AF=0.72;AN=2;DP=1661;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2157,150,0:0,0,33,14
chr1	212220847	.	G	A	697.58	PASS	AC=2;AF=0.703;AN=2;DP=775;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:761,57,0:0,0,2,17
chr1	212236157	.	G	T	1485.24	PASS	AC=1;AF=0.955;AN=2;DP=1978;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:557,0,712:18,8,15,6
chr1	212241714	.	TAA	TA,TAAAA,TAAA,T	1233.05	PASS	AC=1,0,0,0;AF=0.538,0.038,0.013,0.013;AN=2;DP=3023;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:60:99:8,19,13,20
chr1	212251103	.	A	G	279.11	PASS	AC=1;AF=0.955;AN=2;DP=782;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:283,0,99:1,3,3,7
chr1	212251367	.	GT	G	782.69	PASS	AC=1;AF=0.955;AN=2;DP=863;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:181,0,171:7,1,6,2
chr1	212273639	.	C	T	3724.38	PASS	AC=1;AF=0.955;AN=2;DP=6094;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:92,70:162:99:1556,0,2459:48,44,32,38
chr1	212274413	.	A	C	2004.5	PASS	AC=2;AF=1;AN=2;DP=2773;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1846,174,0:0,0,23,35
chr1	212277107	.	T	G	14314.5	PASS	AC=1;AF=0.641;AN=2;DP=12823;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:257,221:478:99:5672,0,6445:110,147,100,121
chr1	212277304	.	C	G	8681.24	PASS	AC=1;AF=0.641;AN=2;DP=8427;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,171:336:99:4459,0,3871:89,76,89,82
chr1	212277588	.	A	ACTGTGTAGACTTTATGTCAGTT,AGTGTGTAGACTTTATGTCAGTT	10823.6	PASS	AC=1,0;AF=0.932,0.023;AN=2;DP=9788;set=Intersection	GT:DP:GQ:SB	0/1:237:99:58,75,47,57
chr1	212459015	.	G	T	750.17	PASS	AC=2;AF=0.556;AN=2;DP=1675;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2418,204,0:0,0,44,24
chr1	212475573	.	T	C	780.32	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.08;FractionInformativeReads=1;MQ=60;MQRankSum=0.939;QD=13.93;ReadPosRankSum=3.923;SOR=0.465;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:25,31:56:99:809,0,659:8,17,12,19
chr1	212515613	.	C	T	1433.4	PASS	AC=2;AF=0.56;AN=2;DP=2331;set=variant-variant2-variant4-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3476,315,0:0,0,32,73
chr1	212521639	.	T	G	1497.47	PASS	AC=2;AF=0.869;AN=2;DP=1924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1598,135,0:0,0,32,13
chr1	212526288	.	C	T	5527.96	PASS	AC=2;AF=0.866;AN=2;DP=6801;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6034,582,0:0,0,103,92
chr1	212530192	.	T	C	2447.33	PASS	AC=2;AF=0.977;AN=2;DP=2944;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3269,279,0:0,0,35,58
chr1	212534377	.	T	A	6392.01	PASS	AC=2;AF=0.556;AN=2;DP=11964;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,541:541:99:16965,1619,0:0,0,246,295
chr1	212537553	.	G	A	4703.67	PASS	AC=2;AF=0.556;AN=2;DP=7433;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,336:338:99:10373,955,0:1,1,146,190
chr1	212537702	.	G	A	2422.65	PASS	AC=2;AF=0.556;AN=2;DP=3812;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:7477,509,0:0,0,88,78
chr1	212537707	.	C	T	2485.63	PASS	AC=2;AF=0.574;AN=2;DP=3888;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:7421,503,0:0,0,89,76
chr1	212538771	.	CTTT	CTTTTT,CTT,CTTTT,CT,C	135.95	PASS	AC=0,1,0,0,0;AF=0.017,0.317,0.05,0.1,0.017;AN=2;DP=1143;set=variant2-variant3-variant4-filterInvariant5-variant6-variant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant15-variant17-filterInvariant18-variant21-variant23-filterInvariant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/2:19:77:2,10,1,6
chr1	212553111	.	G	C	438.08	PASS	AC=1;AF=0.537;AN=2;DP=1053;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:711,0,633:15,6,18,5
chr1	212560327	.	A	G	2052.8	PASS	AC=2;AF=0.977;AN=2;DP=7215;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:4855,482,0:0,0,70,91
chr1	212588206	.	C	G	1908.97	PASS	AC=1;AF=0.537;AN=2;DP=4571;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:110,94:204:99:2757,0,3163:26,84,25,69
chr1	212615875	.	T	C	2660.94	PASS	AC=1;AF=0.586;AN=2;DP=2554;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,48:105:99:1159,0,1533:34,23,27,21
chr1	212616080	.	C	CATTTT	76.01	PASS	AC=1;AF=0.556;AN=2;DP=279;MQ=60;set=variant2-variant5-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant30-variant31-variant33-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:137,0,426:2,6,0,4
chr1	212617520	.	G	T	89.93	PASS	AC=1;AF=0.567;AN=2;DP=106;MQ=60;set=variant4-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant30-variant31-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:73:79,0,73:2,0,2,1
chr1	212617829	.	C	G	531.52	PASS	AC=1;AF=0.568;AN=2;DP=2252;set=variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant30-variant31-variant33-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:72,59:131:99:1539,0,1761:30,42,23,36
chr1	212617860	.	CGTGTGTGTGT	CGTGT,CGTGTGT,CGTGTGTGTGTGT,CGTGTGTGT,C,CGT	810.5	PASS	AC=0,1,0,0,0,0;AF=0.118,0.329,0.039,0.079,0.079,0.039;AN=2;DP=2400;set=variant-variant2-variant4-variant5-filterInvariant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:26:99:2,13,2,9
chr1	212617907	.	GTGTA	G	204.73	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;set=variant2-variant9-variant15	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:173,0,550:3,16,1,9
chr1	212619009	.	C	A	135.11	PASS	AC=1;AF=0.55;AN=2;DP=235;set=variant2-variant4-variant5-variant9-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant30-variant31-variant33-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:204,0,171:2,4,5,2
chr1	212619339	.	T	C	3302.63	PASS	AC=1;AF=0.586;AN=2;DP=3422;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,88:149:99:2286,0,1537:26,35,33,55
chr1	212788206	.	G	A	807.68	PASS	AC=1;AF=0.5;AN=2;DP=462;MQ=60;set=variant4-variant6-variant9-variant12-variant13-variant14-variant15-variant22-variant27-variant30	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:753,0,683:18,7,18,9
chr1	212791288	.	CGT	C	40.69	PASS	AC=2;AF=0.823;AN=2;DP=229;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:182,15,0:0,0,4,1
chr1	212793505	.	C	T	832.82	PASS	AC=1;AF=0.5;AN=2;DP=617;MQ=60;set=variant4-variant6-variant7-variant12-variant13-variant14-variant15-variant22-variant27-variant28-variant30-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:506,0,747:14,16,10,13
chr1	212793613	.	T	C	521.88	PASS	AC=2;AF=0.756;AN=2;DP=2026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2271,218,0:0,0,39,34
chr1	212794054	.	A	G	410.29	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.705;QD=18.65;ReadPosRankSum=0.352;SOR=0.836;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:439,0,170:3,4,6,9
chr1	212797890	.	A	G	253.4	PASS	AC=2;AF=0.776;AN=2;DP=551;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:283,27,0:0,0,5,4
chr1	212798977	.	A	G	3088.29	PASS	AC=1;AF=0.55;AN=2;DP=3857;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant27-variant28-variant30-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:125,130:255:99:3030,0,3143:60,65,67,63
chr1	212799870	.	A	G	359	PASS	AC=2;AF=0.86;AN=2;DP=3522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2656,252,0:0,0,42,42
chr1	212799949	.	C	T	415.48	PASS	AC=1;AF=0.692;AN=2;DP=4099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,32:86:99:768,0,1317:25,29,14,18
chr1	212870103	.	C	G	732.88	PASS	AC=2;AF=1;AN=2;DP=881;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1079,90,0:0,0,22,8
chr1	212870410	.	G	A	779.61	PASS	AC=1;AF=0.5;AN=2;DP=1407;MQ=60;set=variant-variant6-variant13-variant15-variant16-variant17-variant25-variant26-variant27-variant34	GT:AD:DP:GQ:PL:SB	0/1:87,68:155:99:1669,0,2258:42,45,31,37
chr1	212873181	.	C	A	138.95	PASS	AC=1;AF=0.5;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant15-variant17-variant26-variant27	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:273,0,260:1,7,3,6
chr1	212900311	.	G	C	677.96	PASS	AC=1;AF=0.72;AN=2;DP=1465;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:311,0,804:14,14,8,5
chr1	212900434	.	C	CG	932.34	PASS	AC=1;AF=0.72;AN=2;DP=1163;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:1078,0,895:12,15,16,15
chr1	212900487	.	A	G	1492.59	PASS	AC=2;AF=0.966;AN=2;DP=1957;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2006,183,0:0,0,34,27
chr1	212910930	.	G	A	3916.66	PASS	AC=1;AF=0.72;AN=2;DP=4429;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,70:146:99:1880,0,2125:33,43,33,37
chr1	212911366	.	CTT	CT,C	1868.79	PASS	AC=1,0;AF=0.725,0.025;AN=2;DP=4091;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:101:99:25,21,26,29
chr1	212911836	.	T	C	5707.53	PASS	AC=1;AF=0.72;AN=2;DP=7029;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,98:220:99:2537,0,3234:55,67,47,51
chr1	212912108	.	ATT	A,AT,ATTT	483.4	PASS	AC=1,0,1;AF=0.405,0.286,0.083;AN=2;DP=1130;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:22:99:0,2,4,16
chr1	212955454	.	G	A	1264.85	PASS	AC=1;AF=0.66;AN=2;DP=2226;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,64:103:99:1614,0,822:18,21,34,30
chr1	212960866	.	C	T	2411.66	PASS	AC=1;AF=0.55;AN=2;DP=1614;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant21-variant24-variant26-variant27-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,44:78:99:1131,0,947:23,11,28,16
chr1	212967871	.	G	T	103.54	PASS	AC=1;AF=0.75;AN=2;DP=176;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,115:3,0,3,0
chr1	212969842	.	CT	CTT,C	100.04	PASS	AC=1,0;AF=0.529,0.015;AN=2;DP=983;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/1:29:99:13,4,10,2
chr1	212970375	.	A	G	1251.44	PASS	AC=2;AF=1;AN=2;DP=1725;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1628,152,0:0,0,35,16
chr1	212985466	.	C	T	177.55	PASS	AC=1;AF=0.638;AN=2;DP=848;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:416,0,241:7,3,9,8
chr1	212989107	.	C	T	293.55	PASS	AC=1;AF=0.654;AN=2;DP=310;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:59:59,0,163:4,2,2,1
chr1	212989840	.	C	T	292.79	PASS	AC=1;AF=0.638;AN=2;DP=851;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:194,0,552:10,12,5,6
chr1	212989891	.	C	T	199.59	PASS	AC=1;AF=0.638;AN=2;DP=620;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:238,0,520:8,11,5,5
chr1	213003372	.	A	T	224.81	PASS	AC=1;AF=0.852;AN=2;DP=145;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,142:4,0,4,0
chr1	213003428	.	T	G	514.78	PASS	AC=1;AF=0.583;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant14-variant15-variant21-variant26-variant27-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:473,0,241:7,3,12,7
chr1	213009178	.	CAA	CA,C	57.2	PASS	AC=1,0;AF=0.474,0.026;AN=2;DP=1121;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:25:99:11,4,7,3
chr1	213009469	.	A	G	10909.2	PASS	AC=1;AF=0.8;AN=2;DP=12347;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,162:343:99:4066,0,4369:85,96,79,83
chr1	213020876	.	C	T	2892.5	PASS	AC=1;AF=0.78;AN=2;DP=4927;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,69:150:99:1719,0,1964:50,31,46,23
chr1	213021136	.	CTTTTTTTTTT	C,CTTTTTTTTTTTT,CT,CTTTTTTTTTTTTT,CTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTTTTTTT,CTTTTT,CTTTTTT	292.11	PASS	AC=0,0,0,0,1,0,0,0,0;AF=0.095,0.119,0.024,0.071,0.095,0.095,0.024,0.024,0.024;AN=2;DP=558;set=variant-variant3-variant7-variant8-variant12-filterInvariant15-filterInvariant17-variant19-variant23-variant24-variant25-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-filterInvariant41-variant42	GT:DP:GQ:SB	0/5:11:66:0,7,0,4
chr1	213031158	.	C	T	4074.76	PASS	AC=1;AF=0.703;AN=2;DP=5330;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,93:178:99:2149,0,1976:45,40,51,42
chr1	213031350	.	C	T	4768.32	PASS	AC=1;AF=0.703;AN=2;DP=5123;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,51:152:99:1181,0,2514:53,48,22,29
chr1	213031448	.	G	C	1644.67	PASS	AC=1;AF=0.672;AN=2;DP=3169;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,53:121:99:1840,0,3391:27,41,25,28
chr1	213031473	.	A	C	3754.99	PASS	AC=1;AF=0.703;AN=2;DP=3038;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,50:107:99:1794,0,3136:23,34,25,25
chr1	213031638	.	GT	G	1434.31	PASS	AC=1;AF=0.5;AN=2;DP=462;MQ=60;set=variant3-variant4-variant13-variant14-variant15-variant27-variant35	GT:AD:DP:GQ:PL:SB	0/1:39,22:61:99:689,0,1382:21,18,9,13
chr1	213031709	.	C	T	1490.41	PASS	AC=1;AF=0.703;AN=2;DP=1975;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:879,0,699:15,9,20,14
chr1	213031948	.	G	C	4308.86	PASS	AC=1;AF=0.703;AN=2;DP=4993;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,72:137:99:1860,0,1730:32,33,37,35
chr1	213032568	.	T	A,G	2912.49	PASS	AC=1,0;AF=0.7,0.014;AN=2;DP=4763;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:156:99:33,37,44,42
chr1	213046236	.	G	A	448.23	PASS	AC=1;AF=0.615;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant14-variant15-variant26-variant27-variant28-variant35-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:212,0,178:1,5,0,6
chr1	213056819	.	A	G	3742.79	PASS	AC=2;AF=1;AN=2;DP=4829;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3643,360,0:0,0,54,66
chr1	213056892	.	A	G	2137.81	PASS	AC=1;AF=0.714;AN=2;DP=2387;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1075,0,1028:13,26,16,27
chr1	213058852	.	T	A	564.11	PASS	AC=1;AF=0.722;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:136,0,329:0,4,1,3
chr1	213061362	.	T	A	2638.45	PASS	AC=1;AF=0.556;AN=2;DP=1968;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,84:141:99:2118,0,1308:22,35,34,50
chr1	213061460	.	T	C	940.71	PASS	AC=1;AF=0.556;AN=2;DP=582;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,30:46:99:853,0,368:5,11,7,23
chr1	213062017	.	T	TTTG	1574.34	PASS	AC=2;AF=0.837;AN=2;DP=2260;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:80:1173,80,0:0,0,4,23
chr1	213068192	.	T	C	1594.38	PASS	AC=2;AF=0.943;AN=2;DP=1357;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1188,93,0:0,0,27,4
chr1	213068233	.	C	T	1173	PASS	AC=2;AF=0.8;AN=2;DP=2564;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1961,194,0:0,0,43,22
chr1	213068404	.	T	C	1563.51	PASS	AC=1;AF=0.556;AN=2;DP=1165;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,28:76:99:657,0,1369:19,29,9,19
chr1	213068436	.	A	G	1311.35	PASS	AC=1;AF=0.556;AN=2;DP=819;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:554,0,1104:14,23,8,14
chr1	213068542	.	C	CTGAT	1841.42	PASS	AC=1;AF=0.556;AN=2;DP=894;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:1417,0,1076:16,12,21,12
chr1	213068595	.	C	T	834.89	PASS	AC=1;AF=0.667;AN=2;DP=2549;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,51:114:99:1156,0,1604:38,25,30,21
chr1	213068971	.	T	G	2243.98	PASS	AC=2;AF=0.8;AN=2;DP=5594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,193:194:99:6412,571,0:1,0,125,68
chr1	213069258	.	T	A	4204.11	PASS	AC=1;AF=0.677;AN=2;DP=9491;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:198,207:405:99:5447,0,5084:76,122,91,116
chr1	213069305	.	G	A	7228.14	PASS	AC=1;AF=0.556;AN=2;DP=4216;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,144:308:99:3637,0,4078:75,89,57,87
chr1	213069420	.	C	T	2018.08	PASS	AC=1;AF=0.677;AN=2;DP=2874;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,59:121:99:1977,0,1709:27,35,19,40
chr1	213069476	.	T	C	2156.75	PASS	AC=1;AF=0.556;AN=2;DP=1256;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:963,0,1312:23,20,25,14
chr1	213069563	.	C	T	4994.13	PASS	AC=1;AF=0.556;AN=2;DP=3190;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,104:204:99:2557,0,2486:49,51,54,50
chr1	213069738	.	C	T	2225.79	PASS	AC=1;AF=0.556;AN=2;DP=1830;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,68:140:99:2119,0,2239:37,35,29,39
chr1	213069783	.	A	G	1704.56	PASS	AC=2;AF=0.8;AN=2;DP=4232;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:5150,414,0:0,0,81,57
chr1	213071051	.	G	A	315.79	PASS	AC=1;AF=0.667;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:236,0,421:8,9,5,5
chr1	213071210	.	G	A	1519.19	PASS	AC=1;AF=0.603;AN=2;DP=2586;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,61:105:99:1870,0,1119:30,14,48,13
chr1	213071341	.	T	C	4343.28	PASS	AC=1;AF=0.603;AN=2;DP=8537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,219:412:99:5417,0,4374:98,95,119,100
chr1	213071445	.	G	A	3662.26	PASS	AC=1;AF=0.617;AN=2;DP=7542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant23-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,176:334:99:4683,0,4125:78,80,83,93
chr1	213071600	.	G	A	10720.4	PASS	AC=1;AF=0.556;AN=2;DP=6637;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant11-variant13-variant14-variant15-variant26-variant27-variant28-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:218,239:457:99:5890,0,5109:110,108,119,120
chr1	213071761	.	A	ATAAT	2913.14	PASS	AC=1;AF=0.603;AN=2;DP=4009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,91:182:99:3503,0,5486:30,61,30,61
chr1	213162146	.	G	A	3782.57	PASS	AC=1;AF=0.528;AN=2;DP=4350;MQ=60;set=variant-variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant25-variant27-variant30-variant34-variant35-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,162:319:99:4042,0,4018:83,74,96,66
chr1	213164083	.	A	G	10095.4	PASS	AC=1;AF=0.705;AN=2;DP=12673;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:188,161:349:99:3949,0,4849:90,98,82,79
chr1	213164502	.	A	AAAGT	7518.57	PASS	AC=2;AF=1;AN=2;DP=5376;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:6376,430,0:0,0,58,84
chr1	213164918	.	G	A	1974.6	PASS	AC=1;AF=0.55;AN=2;DP=3203;MQ=60;set=variant-variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant34-variant35-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,98:221:99:2328,0,3023:55,68,41,57
chr1	213167762	.	A	G	1999.56	PASS	AC=1;AF=0.583;AN=2;DP=1215;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant10-variant14-variant15-variant19-variant27-variant29-variant30-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:58,54:112:99:1475,0,1727:45,13,38,16
chr1	213168190	.	C	G	1448.95	PASS	AC=1;AF=0.589;AN=2;DP=1500;MQ=60;set=variant-variant3-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,27:69:99:792,0,1266:14,28,10,17
chr1	213173457	.	C	T	254.16	PASS	AC=1;AF=0.692;AN=2;DP=1110;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:306,0,312:8,2,7,3
chr1	213178340	.	G	A	1158.55	PASS	AC=1;AF=0.692;AN=2;DP=3911;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,70:129:99:1719,0,1475:35,24,42,28
chr1	213180441	.	GA	G,GAA	438.87	PASS	AC=1,0;AF=0.214,0.321;AN=2;DP=2006;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:43:99:19,10,9,5
chr1	213224719	.	T	C	1426.16	PASS	AC=1;AF=0.779;AN=2;DP=4813;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,74:133:99:1956,0,1231:37,22,46,28
chr1	213234933	.	G	GT,GTT	635.52	PASS	AC=1,0;AF=0.539,0.013;AN=2;DP=3956;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:90:99:17,42,11,20
chr1	213405414	.	GGCAACTGAGGAT	G	340.83	PASS	AC=1;AF=0.779;AN=2;DP=1554;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,17:52:99:609,0,4129:25,10,14,3
chr1	214161473	.	TC	T	569.44	PASS	AC=2;AF=1;AN=2;DP=917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1174,99,0:0,0,15,18
chr1	214161754	.	AG	A	1963.16	PASS	AC=1;AF=0.676;AN=2;DP=3813;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,69:169:99:2027,0,3134:48,52,30,39
chr1	214161820	.	G	A	1558.58	PASS	AC=1;AF=0.652;AN=2;DP=1831;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:786,0,1139:13,24,11,22
chr1	214454471	.	G	A	105.9	PASS	AC=1;AF=0.625;AN=2;DP=333;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant23-variant24-variant25-variant26-variant31-variant32-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:107,0,240:6,4,4,1
chr1	214478459	.	G	A	865.73	PASS	AC=1;AF=0.55;AN=2;DP=2351;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,47:93:99:1097,0,1099:25,21,25,22
chr1	214491536	.	G	C	3309	PASS	AC=1;AF=0.648;AN=2;DP=3293;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,73:157:99:1591,0,2207:33,51,31,42
chr1	214492286	.	G	A	4147.94	PASS	AC=2;AF=0.875;AN=2;DP=5197;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4488,452,0:0,0,66,85
chr1	214497861	.	G	T	884.93	PASS	AC=1;AF=0.648;AN=2;DP=501;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:373,0,376:10,1,10,5
chr1	214500907	.	A	C	2594.72	PASS	AC=1;AF=0.648;AN=2;DP=2013;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,43:91:99:955,0,1200:33,15,25,18
chr1	214503489	.	T	G	982.29	PASS	AC=1;AF=0.588;AN=2;DP=3884;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,56:148:99:1216,0,2080:49,43,26,30
chr1	214504604	.	T	C	3100.34	PASS	AC=2;AF=0.884;AN=2;DP=3810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3276,318,0:0,0,43,63
chr1	214505640	.	A	G	930.97	PASS	AC=1;AF=0.536;AN=2;DP=896;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant9-variant10-variant12-variant14-variant15-variant17-variant24-variant25-variant26-variant31-variant40	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:764,0,609:11,12,9,20
chr1	214505716	.	T	C	833.12	PASS	AC=2;AF=0.898;AN=2;DP=935;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:653,63,0:0,0,8,13
chr1	214531183	.	G	C	797.25	PASS	AC=1;AF=0.5;AN=2;DP=480;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant15-variant25-variant29-variant39	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1132,0,1027:19,23,17,24
chr1	214531239	.	C	T	692.19	PASS	AC=1;AF=0.567;AN=2;DP=990;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant14-variant15-variant17-variant24-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,44:74:99:1110,0,755:10,20,18,26
chr1	214542668	.	T	C	403.28	PASS	AC=1;AF=0.789;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:26:186,0,26:1,1,5,1
chr1	214542819	.	T	C	3229.19	PASS	AC=1;AF=0.738;AN=2;DP=4674;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,88:155:99:2076,0,1579:41,26,50,38
chr1	214551276	.	G	A	271.58	PASS	AC=1;AF=0.738;AN=2;DP=968;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-filterInvariant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:452,0,365:10,5,14,4
chr1	214558228	.	A	G	463.64	PASS	AC=1;AF=0.738;AN=2;DP=803;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:328,0,523:5,11,1,9
chr1	214564177	.	C	T	1304.74	PASS	AC=1;AF=0.571;AN=2;DP=1744;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant14-variant15-variant24-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,75:139:99:1855,0,1635:41,23,53,22
chr1	214564191	.	A	C	1646.81	PASS	AC=1;AF=0.607;AN=2;DP=2146;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant14-variant15-variant24-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,92:178:99:2181,0,2219:57,29,58,34
chr1	214564340	.	T	C	5435.65	PASS	AC=1;AF=0.738;AN=2;DP=7823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,94:211:99:2230,0,2831:48,69,39,55
chr1	214566845	.	A	G	634.25	PASS	AC=2;AF=0.909;AN=2;DP=839;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:870,78,0:0,0,20,6
chr1	214566952	.	A	G	3409.81	PASS	AC=1;AF=0.75;AN=2;DP=3907;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,49:133:99:1162,0,2227:53,31,29,20
chr1	214567013	.	CG	C	4479.69	PASS	AC=1;AF=0.75;AN=2;DP=5861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,91:201:99:2228,0,2800:57,53,48,43
chr1	214571251	.	A	C	1730.46	PASS	AC=1;AF=0.571;AN=2;DP=2590;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,81:153:99:1921,0,1716:44,28,48,33
chr1	214576354	.	T	C	1983.32	PASS	AC=1;AF=0.5;AN=2;DP=1155;MQ=60;set=variant7-variant9-variant15-variant29-variant36-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:98,101:199:99:2644,0,2369:40,58,45,56
chr1	214576482	.	C	T	461.98	PASS	AC=1;AF=0.526;AN=2;DP=698;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:707,0,574:3,15,4,19
chr1	214576513	.	C	T	476.83	PASS	AC=1;AF=0.545;AN=2;DP=443;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant31-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:447,0,302:1,8,0,12
chr1	214638172	.	C	T	3605.3	PASS	AC=2;AF=0.826;AN=2;DP=8073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:6535,649,0:0,0,89,128
chr1	214638319	.	T	C	1047.46	PASS	AC=2;AF=0.826;AN=2;DP=1700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1521,135,0:0,0,12,33
chr1	214638347	.	A	G	763.3	PASS	AC=2;AF=0.826;AN=2;DP=915;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:920,78,0:0,0,5,21
chr1	214638383	.	CCCCCCCCCCCA	C	448.16	PASS	AC=2;AF=0.905;AN=2;DP=435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:621,42,0:0,0,2,12
chr1	214638396	.	C	G	237.22	PASS	AC=1;AF=0.727;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant31-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:172,0,283:1,7,1,5
chr1	214638419	.	G	T	286.77	PASS	AC=2;AF=0.929;AN=2;DP=258;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	214724413	.	G	C	440.18	PASS	AC=2;AF=0.762;AN=2;DP=1480;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1655,114,0:0,0,25,11
chr1	214724422	.	G	T	508.04	PASS	AC=2;AF=0.762;AN=2;DP=1622;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1683,117,0:0,0,26,13
chr1	214724668	.	G	A	634.94	PASS	AC=1;AF=0.697;AN=2;DP=2843;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,61:106:99:1381,0,1111:19,26,26,35
chr1	214787130	.	G	A	2393.2	PASS	AC=1;AF=0.662;AN=2;DP=6803;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,115:207:99:2799,0,2218:43,49,51,64
chr1	214814571	.	C	T	520.24	PASS	AC=1;AF=0.662;AN=2;DP=1928;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,19:60:99:487,0,1039:20,21,6,13
chr1	214817856	.	T	C	408.25	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:436,0,420:10,4,11,5
chr1	214820099	.	A	G	1697.92	PASS	AC=1;AF=0.676;AN=2;DP=1615;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:932,0,932:22,12,17,21
chr1	214826196	.	G	A	1375.88	PASS	AC=1;AF=0.629;AN=2;DP=3626;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,71:135:99:1803,0,1603:37,27,40,31
chr1	214826364	.	G	A	861.04	PASS	AC=1;AF=0.613;AN=2;DP=1680;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:1089,0,1022:8,26,10,29
chr1	214826810	.	CTTT	CTT,C,CT	1793.57	PASS	AC=2,0,0;AF=0.943,0.011,0.011;AN=2;DP=4577;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:102:99:2,3,44,53
chr1	214828812	.	A	G	663.26	PASS	AC=1;AF=0.671;AN=2;DP=2677;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1283,0,1511:16,38,17,33
chr1	214830617	.	A	G	1058.07	PASS	AC=1;AF=0.657;AN=2;DP=3852;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,63:139:99:1632,0,1953:34,42,28,35
chr1	214837110	.	C	G	624.26	PASS	AC=1;AF=0.671;AN=2;DP=2453;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,42:67:99:1252,0,658:10,15,17,25
chr1	215256547	.	G	C	114.8	PASS	AC=1;AF=0.5;AN=2;DP=455;MQ=60;set=variant-filterInvariant2-variant5-filterInvariant9-variant12-variant15-variant19-variant20-variant21-variant24-variant28-variant32-filterInvariant33-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:269,0,1151:5,14,10,0
chr1	215256553	.	T	C	108.6	PASS	AC=1;AF=0.5;AN=2;DP=604;MQ=60;set=variant-filterInvariant2-variant5-variant9-variant10-filterInvariant12-variant15-variant19-variant20-variant21-variant24-variant28-variant32-variant33-variant34-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:29,10:39:99:253,0,1362:11,18,10,0
chr1	215256557	.	G	C	32.93	PASS	AC=1;AF=0.5;AN=2;DP=372;MQ=60;set=filterInvariant2-variant5-variant9-filterInvariant10-variant15-variant19-variant21-variant28-variant34-filterInvariant39	GT:AD:DP:GQ:PL:SB	0/1:29,8:37:99:217,0,1414:11,18,8,0
chr1	215256558	.	CGT	C	322.23	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:33,8:41:99:211,0,1498:14,19,8,0
chr1	215260152	.	A	T	31.67	PASS	AC=2;AF=0.629;AN=2;DP=622;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1091,75,0:0,0,7,18
chr1	215345263	.	GTCTCTC	G	764.85	PASS	AC=2;AF=0.798;AN=2;DP=916;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,23:25:27:986,27,0:1,1,17,6
chr1	215409388	.	AATCTATCT	AATCTATCTATCATCTATCTATCTATCTATCTATCT,A,AATCTATCTATCATCTATCT,AATCTATCTATCATCTATCTATCTATCTATCT,AATCTATCTATCT,AATCT,AATCTATCTATCATCTATCTATCTATCT,AATCTATCTATCATCTATCTATCT,AATCTATCTATCATCTATCTATCTATCTATCTATCTATCT,AATCTATCTATCTATCT	2590.75	PASS	AC=0,0,0,1,0,0,1,0,0,0;AF=0.023,0.058,0.221,0.047,0.128,0.151,0.07,0.07,0.012,0.012;AN=2;DP=7170;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	7/4:60:99:1,1,44,14
chr1	215410106	.	G	C	2734.7	PASS	AC=2;AF=0.774;AN=2;DP=4383;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,161:162:99:4817,475,0:0,1,83,78
chr1	215753355	.	T	G	1171.35	PASS	AC=1;AF=0.568;AN=2;DP=1820;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant27-variant29-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,54:106:99:1323,0,1302:21,31,21,33
chr1	215781574	.	A	G	825.63	PASS	AC=1;AF=0.568;AN=2;DP=764;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant27-variant29-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:442,0,753:3,19,5,13
chr1	215793834	.	G	A	2756.05	PASS	AC=1;AF=0.732;AN=2;DP=4488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,60:130:99:1375,0,1927:40,30,32,28
chr1	215796196	.	A	ATTATT	105.97	PASS	AC=1;AF=0.591;AN=2;DP=87;MQ=60;set=variant4-variant8-variant9-variant11-variant15-variant17-variant19-variant21-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:268,0,183:3,0,4,1
chr1	215798014	.	G	A	14498.8	PASS	AC=2;AF=1;AN=2;DP=20723;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,624:624:99:18171,1866,0:0,0,301,323
chr1	215814186	.	CAAA	CAA,CA,C	82.27	PASS	AC=0,1,0;AF=0.583,0.1,0.017;AN=2;DP=495;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:9:99:2,3,2,2
chr1	215844373	.	C	T	1776.82	PASS	AC=1;AF=0.5;AN=2;DP=263;MQ=60;set=variant6-variant15	GT:AD:DP:GQ:PL:SB	0/1:78,45:123:99:1101,0,1992:34,44,23,22
chr1	215848587	.	T	C	1868.42	PASS	AC=2;AF=0.63;AN=2;DP=3274;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5127,471,0:0,0,70,87
chr1	215848641	.	T	C	4746.7	PASS	AC=2;AF=0.807;AN=2;DP=5820;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5052,479,0:0,0,78,82
chr1	215853748	.	GTT	GT,G	966.41	PASS	AC=2,0;AF=0.92,0.011;AN=2;DP=2679;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:67:99:0,0,20,47
chr1	215916728	.	ATGTG	ATG,A	144.33	PASS	AC=1,0;AF=0.769,0.115;AN=2;DP=94;FS=0;set=variant2-variant3-variant12-variant15-variant16-variant17-variant22-variant24-variant26-variant31-variant39-variant42-variant43	GT:DP:GQ:SB	0/1:11:75:0,3,2,6
chr1	215916732	.	G	A	115.46	PASS	AC=1;AF=0.85;AN=2;DP=77;FS=0;set=variant2-variant3-variant15-variant16-variant17-variant24-variant26-variant31-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:75:260,0,75:0,3,2,6
chr1	215932957	.	G	A	986.18	PASS	AC=2;AF=0.571;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant23-variant25-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2877,252,0:0,0,62,22
chr1	215956304	.	A	G	492.05	PASS	AC=2;AF=0.653;AN=2;DP=1156;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1196,102,0:0,0,7,27
chr1	215960167	.	T	G	1381.73	PASS	AC=2;AF=0.653;AN=2;DP=3219;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3472,332,0:0,0,42,69
chr1	216051082	.	T	C	2451.49	PASS	AC=1;AF=0.5;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant15-variant27-variant38	GT:AD:DP:GQ:PL:SB	0/1:48,87:135:99:2480,0,1135:31,17,58,29
chr1	216107929	.	T	C	1374.97	PASS	AC=1;AF=0.5;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:28,49:77:99:1403,0,801:20,8,36,13
chr1	216172380	.	A	G	681.18	PASS	AC=1;AF=0.652;AN=2;DP=1898;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,51:83:99:1404,0,705:11,21,19,32
chr1	216219781	.	A	G	673.15	PASS	AC=1;AF=0.711;AN=2;DP=2951;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,55:88:99:1402,0,833:21,12,32,23
chr1	216221721	.	C	T	620.63	PASS	AC=1;AF=0.618;AN=2;DP=1463;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:743,0,761:19,10,21,3
chr1	216246675	.	AG	A	1141.06	PASS	AC=2;AF=0.854;AN=2;DP=1996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1748,150,0:0,0,11,39
chr1	216258194	.	G	T	461.47	PASS	AC=1;AF=0.594;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant9-variant12-variant13-variant15-variant19-variant20-variant25-variant27-variant31-variant33-variant36-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:748,0,597:7,15,6,20
chr1	216347452	.	C	A	1390.03	PASS	AC=1;AF=0.579;AN=2;DP=2565;MQ=60;set=variant-variant4-variant9-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:89,80:169:99:2206,0,2071:41,48,30,50
chr1	216347556	.	A	G	249.51	PASS	AC=1;AF=0.579;AN=2;DP=1012;MQ=60;set=variant-variant4-variant9-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:943,0,1000:13,23,6,24
chr1	216348764	.	C	T	1516.97	PASS	AC=1;AF=0.614;AN=2;DP=3558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,58:135:99:1475,0,2087:31,46,20,38
chr1	216370108	.	C	T	1652.79	PASS	AC=1;AF=0.605;AN=2;DP=745;MQ=60;set=variant-variant4-variant9-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:430,0,852:3,22,1,12
chr1	216370130	.	T	G	916.77	PASS	AC=2;AF=0.817;AN=2;DP=1067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1126,78,0:0,0,2,24
chr1	216371934	.	A	C	1078.28	PASS	AC=1;AF=0.605;AN=2;DP=500;set=variant-variant4-variant9-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:427,0,392:1,10,1,11
chr1	216390694	.	C	T	1369.94	PASS	AC=1;AF=0.632;AN=2;DP=2678;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1236,0,1329:30,21,29,15
chr1	216495191	.	T	G	955.78	PASS	AC=1;AF=0.619;AN=2;DP=1265;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,42:89:99:1094,0,1409:36,11,29,13
chr1	216495400	.	A	G	1068.79	PASS	AC=1;AF=0.619;AN=2;DP=2228;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,69:146:99:1685,0,1922:25,52,25,44
chr1	216496947	.	G	A	2968.78	PASS	AC=1;AF=0.619;AN=2;DP=5112;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:167,166:333:99:3991,0,4081:77,90,79,87
chr1	216500830	.	G	C	496.25	PASS	AC=1;AF=0.679;AN=2;DP=672;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:620,0,489:13,2,16,2
chr1	216592003	.	T	C	1154.33	PASS	AC=1;AF=0.686;AN=2;DP=3249;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,56:116:99:1326,0,1462:31,29,26,30
chr1	216595306	.	C	T	727.26	PASS	AC=1;AF=0.689;AN=2;DP=3808;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,54:111:99:1339,0,1441:28,29,26,28
chr1	216677350	.	C	T	5071.99	PASS	AC=2;AF=0.943;AN=2;DP=13628;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,379:379:99:11455,1135,0:0,0,177,202
chr1	216679643	.	A	G	394.14	PASS	AC=2;AF=0.943;AN=2;DP=1917;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2096,165,0:0,0,13,42
chr1	216741314	.	C	T	1341.08	PASS	AC=1;AF=0.594;AN=2;DP=2280;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant27-variant35-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,72:152:99:1791,0,2029:40,40,31,41
chr1	217113059	.	GAA	GA,G	1986.66	PASS	AC=1,0;AF=0.75,0.045;AN=2;DP=5420;set=Intersection	GT:DP:GQ:SB	0/1:106:99:8,30,24,44
chr1	217173648	.	T	G	2290.61	PASS	AC=1;AF=0.724;AN=2;DP=2426;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:1076,0,914:23,4,29,6
chr1	217174168	.	G	T	48.53	PASS	AC=1;AF=0.816;AN=2;DP=83;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant12-variant15-variant20-variant21-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:74:74,0,121:0,4,1,2
chr1	217262702	.	CTT	CT,C	40.37	PASS	AC=2,0;AF=0.778,0.037;AN=2;DP=213;set=variant-variant2-variant3-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant36-variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:8:24:0,0,6,2
chr1	217311068	.	C	T	1768.13	PASS	AC=1;AF=0.6;AN=2;DP=585;MQ=60;set=variant2-variant7-variant10-variant15-variant22-variant29-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:807,0,804:15,16,14,18
chr1	217600228	.	G	A	419.26	PASS	AC=1;AF=0.629;AN=2;DP=730;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:580,0,806:22,2,17,2
chr1	217600603	.	T	C	3902.75	PASS	AC=1;AF=0.577;AN=2;DP=7688;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:179,178:357:99:4217,0,4526:73,106,77,101
chr1	217600728	.	C	G	732.58	PASS	AC=1;AF=0.589;AN=2;DP=2588;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,48:109:99:1354,0,1613:22,39,19,29
chr1	217600781	.	C	A	289.93	PASS	AC=1;AF=0.629;AN=2;DP=1980;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,37:62:99:969,0,687:9,16,16,21
chr1	217600860	.	A	G	330.22	PASS	AC=1;AF=0.589;AN=2;DP=1269;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,37:62:99:888,0,560:11,14,17,20
chr1	217600946	.	T	TA	282.56	PASS	AC=1;AF=0.589;AN=2;DP=1260;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:445,0,533:15,8,9,10
chr1	217602392	.	T	A	3380.55	PASS	AC=1;AF=0.577;AN=2;DP=5052;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:143,124:267:99:3280,0,3878:75,68,71,53
chr1	217602811	.	T	G	600.25	PASS	AC=1;AF=0.577;AN=2;DP=936;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:614,0,661:11,17,7,15
chr1	217602867	.	C	T	280.55	PASS	AC=1;AF=0.589;AN=2;DP=619;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:461,0,364:6,10,6,11
chr1	217602945	.	G	A	75.8	PASS	AC=1;AF=0.652;AN=2;DP=211;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:204,0,106:1,2,2,5
chr1	217603167	.	CAAAAAAAAAAAA	CAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAAA,CAAAAAAAAAA,C,CAAAAAAAAAAAAA	228.73	PASS	AC=0,0,1,0,0,0;AF=0.091,0.061,0.167,0.152,0.045,0.015;AN=2;DP=1385;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-filterInvariant12-variant15-filterInvariant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-filterInvariant32-variant33-variant34-variant35-variant37-variant39-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:41:99:11,7,22,1
chr1	217603318	.	CATA	C	2884.96	PASS	AC=1;AF=0.629;AN=2;DP=5389;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:96,93:189:99:3396,0,3930:51,45,49,44
chr1	217603506	.	T	TGC	3827.41	PASS	AC=1;AF=0.577;AN=2;DP=5420;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:121,119:240:99:4419,0,5899:53,68,56,63
chr1	217603507	.	A	C,G	3836.45	PASS	AC=1,0;AF=0.536,0.054;AN=2;DP=5653;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:227:99:54,68,47,58
chr1	217603511	.	CTTT	C	3657.34	PASS	AC=1;AF=0.577;AN=2;DP=5158;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:123,101:224:99:3983,0,5957:53,70,45,56
chr1	217603539	.	T	C	1945.22	PASS	AC=1;AF=0.629;AN=2;DP=6067;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,92:191:99:2312,0,2411:45,54,42,50
chr1	217603847	.	C	T	4843.31	PASS	AC=1;AF=0.589;AN=2;DP=10211;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:231,228:459:99:5539,0,5625:133,98,138,90
chr1	217604124	.	T	C	892.95	PASS	AC=1;AF=0.643;AN=2;DP=2537;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,43:87:99:1358,0,1317:18,26,21,22
chr1	217604777	.	G	A	484.14	PASS	AC=1;AF=0.589;AN=2;DP=1258;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:803,0,641:6,17,7,21
chr1	217671771	.	C	G	1157.3	PASS	AC=2;AF=0.597;AN=2;DP=3292;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3329,333,0:0,0,49,62
chr1	217781558	.	GA	G	928.27	PASS	AC=1;AF=0.556;AN=2;DP=2766;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,43:99:99:915,0,1270:39,17,30,13
chr1	217782273	.	T	C	4691.56	PASS	AC=1;AF=0.703;AN=2;DP=12452;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:223,179:402:99:4314,0,5542:89,134,75,104
chr1	217783810	.	C	T	593.83	PASS	AC=1;AF=0.556;AN=2;DP=1752;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:893,0,688:12,16,11,21
chr1	217804325	.	G	A	2118.76	PASS	AC=1;AF=0.703;AN=2;DP=7529;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,103:213:99:2429,0,2830:41,69,48,55
chr1	217804635	.	T	C	1249.29	PASS	AC=1;AF=0.556;AN=2;DP=3300;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,62:125:99:1627,0,1523:35,28,41,21
chr1	217804955	.	T	C	426.83	PASS	AC=1;AF=0.556;AN=2;DP=642;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:210,0,398:0,11,1,5
chr1	217856787	.	A	AT	710.85	PASS	AC=2;AF=0.632;AN=2;DP=1090;MQ=60;set=variant-variant3-variant4-variant7-variant12-variant13-variant15-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2103,210,0:0,0,21,49
chr1	217915593	.	G	A	285.9	PASS	AC=2;AF=0.652;AN=2;DP=723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1112,99,0:0,0,9,24
chr1	217947738	.	G	A	2329.71	PASS	AC=2;AF=0.825;AN=2;DP=3059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2729,281,0:0,0,56,38
chr1	217955355	.	ATAT	A	112.63	PASS	AC=2;AF=0.641;AN=2;DP=650;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1384,93,0:0,0,27,4
chr1	218036237	.	T	G	738.61	PASS	AC=1;AF=0.639;AN=2;DP=512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant36	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:442,0,196:2,5,4,10
chr1	218042908	.	G	A	1384.98	PASS	AC=1;AF=0.618;AN=2;DP=2407;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant13-variant15-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant36	GT:AD:DP:GQ:PL:SB	0/1:102,80:182:99:1665,0,2320:54,48,39,41
chr1	218043988	.	A	C	7627.03	PASS	AC=1;AF=0.6;AN=2;DP=7988;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant36	GT:AD:DP:GQ:PL:SB	0/1:251,214:465:99:8215,0,11909:134,117,111,103
chr1	218043992	.	T	C	7646	PASS	AC=1;AF=0.6;AN=2;DP=8116;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant36	GT:AD:DP:GQ:PL:SB	0/1:258,216:474:99:8212,0,11920:136,122,110,106
chr1	218044052	.	A	G	5577.07	PASS	AC=1;AF=0.619;AN=2;DP=9497;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant36	GT:AD:DP:GQ:PL:SB	0/1:293,260:553:99:6174,0,6626:146,147,122,138
chr1	218475533	.	C	T	308.6	PASS	AC=1;AF=0.66;AN=2;DP=729;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:549,0,696:16,6,16,2
chr1	218506210	.	GAA	GA,GAAA,G	189.14	PASS	AC=0,1,0;AF=0.111,0.375,0.014;AN=2;DP=4710;set=filterInvariant-variant2-variant3-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant13-variant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/2:132:99:59,32,22,19
chr1	218506744	.	CT	C	5206.47	PASS	AC=1;AF=0.66;AN=2;DP=7380;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,193:372:99:6611,0,6050:78,101,87,106
chr1	218609220	.	A	G	287.43	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.62;QD=22.11;ReadPosRankSum=-0.077;SOR=1.802;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:316,0,135:3,1,8,1
chr1	218610662	.	CTT	CT,C	950.17	PASS	AC=1,0;AF=0.511,0.023;AN=2;DP=2780;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:94:99:38,25,19,12
chr1	218699059	.	TA	T,TAA	237	PASS	AC=0,1;AF=0.347,0.153;AN=2;DP=2967;set=variant-variant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-variant11-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/2:78:99:36,8,22,12
chr1	219366400	.	T	TG,TGGG,TGG	250.22	PASS	AC=2,0,0;AF=0.807,0.011,0.034;AN=2;DP=2307;set=Intersection	GT:DP:GQ:SB	1/1:56:68:2,2,39,13
chr1	219383848	.	A	ACTTTTT	1212.07	PASS	AC=2;AF=1;AN=2;DP=1368;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:2418,168,0:0,0,30,15
chr1	219383867	.	T	C	1350.32	PASS	AC=2;AF=1;AN=2;DP=2134;FS=0;MQ=60;MQRankSum=-1.659;ReadPosRankSum=0.258;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2942,213,0:0,0,44,27
chr1	219383905	.	A	G	1854.71	PASS	AC=2;AF=1;AN=2;DP=2926;FS=0;MQ=60;MQRankSum=1.684;ReadPosRankSum=1.444;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2424,260,0:0,0,47,40
chr1	219385151	.	A	G	661.39	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.862;QD=9.73;ReadPosRankSum=-1.354;SOR=0.62;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:690,0,893:21,16,17,14
chr1	219385985	.	A	G	2951.61	PASS	AC=1;AF=0.536;AN=2;DP=4790;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:111,107:218:99:2721,0,2785:64,47,67,40
chr1	219706327	.	A	G	1208.24	PASS	AC=1;AF=0.611;AN=2;DP=1887;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,45:74:99:1369,0,702:20,9,32,13
chr1	219783257	.	A	C	1524.26	PASS	AC=1;AF=0.5;AN=2;DP=1020;set=variant15-variant31-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:211,80:291:99:1552,0,4904:91,120,36,44
chr1	219783279	.	T	A	2241.14	PASS	AC=1;AF=0.636;AN=2;DP=8400;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:141,93:234:99:1867,0,3260:62,79,37,56
chr1	219785453	.	C	T	33.27	PASS	AC=1;AF=0.667;AN=2;DP=8;FS=0;FractionInformativeReads=1;ReadPosRankSum=0.736;set=variant15-variant31-variant40	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:62,0,37:1,0,2,0
chr1	220100497	.	CA	C	527.96	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=8.098;FractionInformativeReads=0.744;MQ=60;MQRankSum=-0.955;QD=12.28;ReadPosRankSum=0.711;SOR=0.072;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:10,22:32:99:565,0,176:0,10,5,17
chr1	220101002	.	A	C	370.59	PASS	AC=1;AF=0.5;AN=2;DP=36;FractionInformativeReads=1;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:399,0,275:4,3,6,3
chr1	220101005	.	A	C	532	PASS	AC=1;AF=0.5;AN=2;DP=131;set=variant4-variant10-variant15-variant22-variant27-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:396,0,317:4,3,7,3
chr1	220101008	.	A	C	546.57	PASS	AC=1;AF=0.684;AN=2;DP=303;set=variant3-variant4-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant22-filterInvariant27-variant31-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:396,0,317:5,3,7,3
chr1	220101022	.	A	AC	96.67	PASS	AC=1;AF=0.684;AN=2;DP=399;set=variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant19-variant21-variant26-variant28-variant29-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:333,0,550:11,6,6,4
chr1	220101029	.	A	AC,AAAC,AAAAC,AAC	1445.73	PASS	AC=1,0,1,0;AF=0.333,0.125,0.125,0.083;AN=2;DP=696;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant26-variant28-variant29-variant31-variant32-variant35-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	1/3:28:99:1,0,17,10
chr1	220145371	.	T	G	445.5	PASS	AC=2;AF=0.86;AN=2;DP=907;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:596,51,0:0,0,12,5
chr1	220145637	.	A	G	852.72	PASS	AC=2;AF=0.62;AN=2;DP=471;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant33-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1062,105,0:0,0,13,22
chr1	220153332	.	T	TAA	882.2	PASS	AC=2;AF=0.841;AN=2;DP=1699;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2535,171,0:0,0,40,12
chr1	220154246	.	AT	A	92.28	PASS	AC=2;AF=0.807;AN=2;DP=1368;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,23:24:44:555,44,0:0,1,6,17
chr1	220154659	.	TAAA	T	315.43	PASS	AC=2;AF=0.841;AN=2;DP=984;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1422,102,0:0,0,28,6
chr1	220154768	.	C	T	816.15	PASS	AC=2;AF=0.645;AN=2;DP=3023;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,118:119:99:3328,346,0:0,1,57,61
chr1	220156090	.	T	C	1265.3	PASS	AC=2;AF=0.841;AN=2;DP=5276;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3122,315,0:0,0,57,48
chr1	220160360	.	A	G	672.02	PASS	AC=2;AF=0.726;AN=2;DP=976;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1316,102,0:0,0,29,5
chr1	220160433	.	A	G	1226.52	PASS	AC=2;AF=0.841;AN=2;DP=3256;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2643,254,0:0,0,59,26
chr1	220162195	.	T	C	380.31	PASS	AC=2;AF=0.732;AN=2;DP=732;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:904,78,0:0,0,6,20
chr1	220178717	.	T	TA	726.93	PASS	AC=2;AF=0.841;AN=2;DP=2450;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1904,171,0:0,0,26,31
chr1	220179322	.	A	T	162.92	PASS	AC=2;AF=0.851;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:214,15,0:0,0,5,0
chr1	220184150	.	CA	C,CAAA	325.06	PASS	AC=2,0;AF=0.733,0.012;AN=2;DP=752;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:24:73:0,0,22,2
chr1	220184164	.	A	G	769.88	PASS	AC=2;AF=0.857;AN=2;DP=347;set=variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant-variant19	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1434,108,0:0,0,32,4
chr1	220191932	.	GA	GAA,GAAA,G	103.03	PASS	AC=2,0,0;AF=0.679,0.06,0.012;AN=2;DP=1124;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:28:83:0,0,7,21
chr1	220192171	.	T	TAAA,TAA	87.37	PASS	AC=2,0;AF=0.662,0.162;AN=2;DP=232;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:7:30:0,0,7,0
chr1	220192192	.	TAA	TA,T	76.23	PASS	AC=2,0;AF=0.676,0.054;AN=2;DP=597;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	1/1:19:55:0,0,18,1
chr1	220192495	.	C	G	1047.96	PASS	AC=2;AF=0.841;AN=2;DP=1904;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2022,171,0:0,0,16,41
chr1	220197545	.	C	T	637.19	PASS	AC=2;AF=0.807;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1183,102,0:0,0,25,9
chr1	220197625	.	G	T	1495.18	PASS	AC=2;AF=0.841;AN=2;DP=4207;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3397,341,0:0,0,67,47
chr1	220205943	.	G	A	253.59	PASS	AC=2;AF=0.807;AN=2;DP=772;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:358,27,0:0,0,1,8
chr1	220205980	.	A	C	118.65	PASS	AC=2;AF=0.814;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:216,18,0:0,0,2,4
chr1	220207017	.	C	T	702.66	PASS	AC=2;AF=0.841;AN=2;DP=2295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1402,138,0:0,0,18,28
chr1	220208154	.	C	A	402.22	PASS	AC=2;AF=0.807;AN=2;DP=1974;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1785,141,0:0,0,40,7
chr1	220231447	.	G	A	1419.25	PASS	AC=2;AF=0.909;AN=2;DP=1906;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2409,192,0:0,0,55,9
chr1	220239448	.	T	C	2566.75	PASS	AC=2;AF=0.881;AN=2;DP=3560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3066,303,0:0,0,40,61
chr1	220240862	.	A	G	473.28	PASS	AC=2;AF=0.55;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant8-variant9-variant15-variant25-variant28-variant29-variant36-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1304,111,0:0,0,10,27
chr1	220307676	.	A	G	226.3	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant15-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:144,0,135:4,0,4,2
chr1	220321023	.	A	G	1749.12	PASS	AC=1;AF=0.5;AN=2;DP=1633;MQ=60;set=variant5-variant6-variant8-variant9-variant15-variant25-variant28-variant29-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:85,85:170:99:2301,0,2347:46,39,43,42
chr1	220322266	.	T	C	5566.82	PASS	AC=1;AF=0.5;AN=2;DP=1237;MQ=60;set=variant8-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:235,263:498:99:6976,0,6163:134,101,140,123
chr1	220323448	.	CTT	CT,C,CTTT	1489.64	PASS	AC=1,0,0;AF=0.5,0.058,0.012;AN=2;DP=6726;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:107:99:19,44,6,38
chr1	220323793	.	CTT	CT,CTTT,C	441.22	PASS	AC=0,0,1;AF=0.4,0.05,0.088;AN=2;DP=4385;set=variant-variant2-variant3-variant4-filterInvariant6-variant7-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:95:99:34,37,12,12
chr1	220331319	.	T	G	538.19	PASS	AC=1;AF=0.5;AN=2;DP=677;MQ=60;set=variant5-variant6-variant8-variant9-variant15-variant25-variant28-variant29-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1064,0,971:14,24,15,25
chr1	220332552	.	C	T	305.58	PASS	AC=1;AF=0.586;AN=2;DP=602;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:391,0,370:10,1,10,5
chr1	220332876	.	G	A	61.77	PASS	AC=1;AF=0.667;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant22-variant24-variant25-variant33-variant35-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:70:204,0,70:0,2,1,4
chr1	220335430	.	A	G	254.91	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant8-variant9-variant13-variant15-variant18-variant24-variant25-variant29-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:232,0,228:6,1,6,1
chr1	220369745	.	TA	T	805.84	PASS	AC=1;AF=0.5;AN=2;DP=1046;MQ=60;set=variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant18-variant24-variant25-variant28-variant29-variant30-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,20:70:99:330,0,1118:18,32,4,16
chr1	220406291	.	A	G	884.49	PASS	AC=1;AF=0.643;AN=2;DP=865;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:798,0,480:4,14,4,22
chr1	220603308	.	TGTGTGA	T	59.66	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=0.78;MQ=60;MQRankSum=-0.448;QD=1.19;ReadPosRankSum=1.654;SOR=0.941;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:33,6:39:97:97,0,975:19,14,4,2
chr1	220603310	.	TGTGA	T	948.83	PASS	AC=1;AF=0.795;AN=2;DP=2013;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,28:35:99:840,0,142:5,2,16,12
chr1	220603324	.	A	G	1058.62	PASS	AC=2;AF=0.692;AN=2;DP=684;set=variant6-variant11-variant14-variant15-variant16-variant17-variant20-variant31-variant34-variant35-variant36-variant37-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1243,103,0:0,0,20,14
chr1	220607685	.	G	A	1654.53	PASS	AC=2;AF=0.943;AN=2;DP=3396;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2780,260,0:0,0,41,46
chr1	220607891	.	A	G	1047.69	PASS	AC=2;AF=0.977;AN=2;DP=1979;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2256,204,0:0,0,44,24
chr1	220608142	.	C	T	1244.28	PASS	AC=2;AF=0.692;AN=2;DP=506;MQ=60;set=variant6-variant11-variant14-variant15-variant16-variant17-variant20-variant31-variant34-variant35-variant36-variant37-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1613,140,0:0,0,15,32
chr1	220789236	.	C	T	1848.96	PASS	AC=2;AF=1;AN=2;DP=2840;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2332,240,0:0,0,36,44
chr1	220789355	.	AT	A	145.99	PASS	AC=2;AF=0.684;AN=2;DP=506;MQ=60;set=variant2-variant4-variant6-variant8-variant11-variant14-variant15-variant20-variant21-variant22-variant24-variant26-variant34-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,16:18:1:392,1,0:1,1,4,12
chr1	220789362	.	T	A	226.77	PASS	AC=2;AF=0.949;AN=2;DP=860;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:523,54,0:0,0,5,13
chr1	220808666	.	CTTT	CTT,CT,C	258.57	PASS	AC=0,1,0;AF=0.317,0.183,0.017;AN=2;DP=786;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:23:99:11,4,7,1
chr1	221052101	.	T	G	1811.83	PASS	AC=1;AF=0.966;AN=2;DP=2636;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,35:54:99:922,0,475:9,10,18,17
chr1	221055105	.	AACACACACACACACAC	AACAC,AACACACACACAC,AACACAC,AACACACACACACAC,AACACACAC,AACACACACAC,AAC,AACACACACACACACACACACAC,A,AACACACACACACACACACAC	143.06	PASS	AC=0,0,0,0,0,0,0,2,0,0;AF=0.139,0.083,0.069,0.042,0.069,0.125,0.097,0.028,0.083,0.014;AN=2;DP=369;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	8/8:6:21:0,0,2,4
chr1	221507141	.	C	T	1544.46	PASS	AC=2;AF=1;AN=2;DP=2137;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1952,180,0:0,0,39,21
chr1	221874929	.	GA	G,GAA	121.57	PASS	AC=0,1;AF=0.458,0.042;AN=2;DP=1471;MQ=60;set=variant-filterInvariant2-filterInvariant5-variant8-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant22-filterInvariant23-variant24-filterInvariant26-filterInvariant27-filterInvariant29-variant31-filterInvariant32-filterInvariant33-variant34-variant36-filterInvariant38-filterInvariant39-filterInvariant40-variant42-filterInvariant44	GT:DP:GQ:SB	0/2:73:99:46,10,13,4
chr1	221876126	.	A	G	446.83	PASS	AC=1;AF=0.565;AN=2;DP=841;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:305,0,641:7,14,2,10
chr1	221912361	.	T	C	749.44	PASS	AC=2;AF=0.814;AN=2;DP=2550;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2677,255,0:0,0,52,33
chr1	221912808	.	T	C	1506.71	PASS	AC=2;AF=0.625;AN=2;DP=4083;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant33-variant35-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5690,532,0:0,0,78,100
chr1	222645528	.	A	G	106.77	PASS	AC=2;AF=0.912;AN=2;DP=175;FractionInformativeReads=1;set=variant-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,4,2
chr1	222645539	.	T	C	106.77	PASS	AC=2;AF=1;AN=2;DP=193;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:262,18,0:0,0,5,1
chr1	222646811	.	G	A	427.45	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;set=variant4-variant15-variant18-variant20-variant28-variant29-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:194,0,442:6,9,3,6
chr1	222646973	.	G	A	61.77	PASS	AC=1;AF=0.672;AN=2;DP=406;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:207,0,351:8,5,5,6
chr1	222646986	.	A	G	98.32	PASS	AC=2;AF=0.977;AN=2;DP=617;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:69:915,69,0:0,0,12,10
chr1	222647144	.	G	A	330.1	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=4.415;FractionInformativeReads=1;MQ=56.02;MQRankSum=0.81;QD=16.51;ReadPosRankSum=-0.579;SOR=1.304;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:358,0,179:5,3,4,8
chr1	222649341	.	A	C	147.54	PASS	AC=2;AF=1;AN=2;DP=558;FS=0;FractionInformativeReads=1;MQRankSum=0.496;ReadPosRankSum=-0.744;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:455,42,0:0,0,11,3
chr1	222649491	.	C	G	472.94	PASS	AC=1;AF=0.603;AN=2;DP=865;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:330,0,575:11,12,8,8
chr1	222650305	.	C	T	772.8	PASS	AC=1;AF=0.65;AN=2;DP=1430;set=variant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant19-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant31-filterInvariant33-variant34-filterInvariant36-filterInvariant37-variant39-filterInvariant40-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:575,0,798:10,14,10,15
chr1	222650329	.	C	T	263.05	PASS	AC=1;AF=0.63;AN=2;DP=737;FractionInformativeReads=1;set=filterInvariant2-variant4-variant6-filterInvariant8-filterInvariant10-variant11-variant13-filterInvariant14-variant15-filterInvariant18-filterInvariant20-filterInvariant21-variant26-filterInvariant28-variant29-filterInvariant30-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:311,0,892:8,15,5,10
chr1	222650534	.	T	C	268.59	PASS	AC=1;AF=0.676;AN=2;DP=1068;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:455,0,515:5,14,5,13
chr1	222705270	.	T	C	1135.07	PASS	AC=1;AF=0.578;AN=2;DP=2216;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1010,0,1094:25,17,26,14
chr1	222705546	.	G	A	173.88	PASS	AC=1;AF=0.586;AN=2;DP=360;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:300,0,191:3,6,2,8
chr1	222713501	.	C	A	2793.29	PASS	AC=1;AF=0.5;AN=2;DP=1564;MQ=60;set=variant4-variant7-variant11-variant15-variant18-variant20-variant28-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,96:197:99:2389,0,2513:44,57,53,43
chr1	222713621	.	C	T	2346.52	PASS	AC=1;AF=0.5;AN=2;DP=1166;MQ=60;set=variant4-variant7-variant11-variant15-variant18-variant20-variant28-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1954,0,1852:38,33,30,40
chr1	222713750	.	G	A	596.63	PASS	AC=1;AF=0.578;AN=2;DP=2397;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,37:93:99:845,0,1582:22,34,14,23
chr1	222721288	.	C	T	2543.54	PASS	AC=1;AF=0.688;AN=2;DP=3940;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,55:92:99:1569,0,1012:17,20,24,31
chr1	222731523	.	GAGAA	G	862.84	PASS	AC=1;AF=0.556;AN=2;DP=300;MQ=60;set=variant-variant6-variant7-variant8-variant10-variant14-variant15-variant17-variant24-variant25-variant26-variant29-variant30-variant33-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:537,0,614:10,1,12,2
chr1	222734662	.	TC	T	541.56	PASS	AC=1;AF=0.5;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant14-variant15-variant24-variant25-variant33-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:370,0,490:10,4,7,4
chr1	222734803	.	G	C	801.79	PASS	AC=1;AF=0.667;AN=2;DP=2325;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:541,0,742:14,15,12,11
chr1	222737265	.	G	T	625.25	PASS	AC=2;AF=1;AN=2;DP=1112;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1002,99,0:0,0,22,11
chr1	222737568	.	C	T	221.49	PASS	AC=2;AF=1;AN=2;DP=561;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:437,39,0:0,0,2,11
chr1	222742676	.	T	C	352.46	PASS	AC=1;AF=0.697;AN=2;DP=2308;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,39:74:99:947,0,925:19,16,22,17
chr1	222751034	.	T	C	1656.56	PASS	AC=1;AF=0.788;AN=2;DP=2135;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,46:79:99:1198,0,928:7,26,16,30
chr1	222761649	.	C	A	1349.32	PASS	AC=1;AF=0.738;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:336,0,474:12,1,9,0
chr1	222763026	.	C	T	369.47	PASS	AC=1;AF=0.738;AN=2;DP=572;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:138,0,280:6,4,4,0
chr1	222763235	.	T	G	1478.84	PASS	AC=1;AF=0.802;AN=2;DP=1633;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:321,0,560:8,14,2,11
chr1	222763249	.	C	T	650.58	PASS	AC=2;AF=0.989;AN=2;DP=1402;FS=0;MQ=60;MQRankSum=0.442;ReadPosRankSum=0.442;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:778,72,0:0,0,8,16
chr1	222798106	.	G	A	4120.33	PASS	AC=2;AF=1;AN=2;DP=5171;FS=0;MQ=60;MQRankSum=-0.751;ReadPosRankSum=1.334;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4602,476,0:0,0,72,87
chr1	222802006	.	A	G	1971.42	PASS	AC=2;AF=1;AN=2;DP=3686;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3432,346,0:0,0,61,55
chr1	222802376	.	A	G	1740.09	PASS	AC=1;AF=0.528;AN=2;DP=2536;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,75:145:99:1815,0,1732:31,39,36,39
chr1	222802803	.	T	G	2411.21	PASS	AC=1;AF=0.75;AN=2;DP=3120;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:1137,0,1015:15,25,20,19
chr1	222802926	.	C	T	2818.59	PASS	AC=2;AF=0.898;AN=2;DP=3977;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3032,288,0:0,0,46,50
chr1	222803204	.	A	G	2061.76	PASS	AC=1;AF=0.528;AN=2;DP=2141;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,66:123:99:1660,0,1401:31,26,29,37
chr1	222805698	.	T	G	1256.4	PASS	AC=1;AF=0.528;AN=2;DP=1148;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:991,0,906:14,22,16,21
chr1	222817799	.	C	T	1400.04	PASS	AC=1;AF=0.5;AN=2;DP=662;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant24-variant25-variant39	GT:AD:DP:GQ:PL:SB	0/1:73,63:136:99:1412,0,1722:33,40,30,33
chr1	222821211	.	C	T	283.69	PASS	AC=1;AF=0.622;AN=2;DP=1514;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:310,0,712:13,15,6,10
chr1	222823529	.	A	C	1264.65	PASS	AC=1;AF=0.744;AN=2;DP=1675;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:642,0,735:19,7,17,6
chr1	222823738	.	GT	G	364.27	PASS	AC=1;AF=0.5;AN=2;DP=742;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:376,0,922:6,23,6,14
chr1	222823743	.	T	G	1072.42	PASS	AC=1;AF=0.744;AN=2;DP=1508;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:697,0,800:9,18,5,21
chr1	222825403	.	G	A	1159.26	PASS	AC=2;AF=0.989;AN=2;DP=1688;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1400,135,0:0,0,18,27
chr1	222825717	.	T	C	1632.65	PASS	AC=1;AF=0.744;AN=2;DP=3762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,71:123:99:1902,0,1154:20,32,24,47
chr1	222825761	.	G	A	1023.06	PASS	AC=2;AF=0.989;AN=2;DP=2548;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2249,210,0:0,0,23,47
chr1	222826481	.	G	A	3182.62	PASS	AC=1;AF=0.744;AN=2;DP=3526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,55:110:99:1400,0,1541:29,26,27,28
chr1	222832295	.	T	C	567.11	PASS	AC=1;AF=0.75;AN=2;DP=689;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:347,0,204:1,6,1,9
chr1	222833601	.	T	C	3355.75	PASS	AC=2;AF=1;AN=2;DP=4532;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3859,369,0:0,0,61,62
chr1	222837594	.	G	A	1195.04	PASS	AC=1;AF=0.784;AN=2;DP=1831;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:482,0,660:11,17,2,14
chr1	222838216	.	C	T	2969.91	PASS	AC=2;AF=0.989;AN=2;DP=3855;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2216,210,0:0,0,26,44
chr1	222839838	.	A	G	8720.25	PASS	AC=2;AF=0.898;AN=2;DP=12288;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,308:308:99:9668,921,0:0,0,113,195
chr1	222840043	.	T	TGGG,TGGGG	936.21	PASS	AC=2,0;AF=0.898,0.091;AN=2;DP=1456;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:40:99:0,0,31,9
chr1	222841152	.	C	CTTAT	7336.17	PASS	AC=1;AF=0.5;AN=2;DP=5331;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:184,145:329:99:5660,0,7867:102,82,86,59
chr1	222846882	.	G	A	135.97	PASS	AC=1;AF=0.797;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:229,0,170:0,5,3,6
chr1	222860734	.	C	T	147.98	PASS	AC=2;AF=1;AN=2;DP=320;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:739,72,0:0,0,17,7
chr1	222886119	.	A	G	10601.2	PASS	AC=1;AF=0.795;AN=2;DP=16270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:213,211:424:99:5180,0,5082:111,102,109,102
chr1	222906294	.	A	G	12588.5	PASS	AC=1;AF=0.713;AN=2;DP=15944;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:211,238:449:99:5604,0,4714:85,126,99,139
chr1	222907904	.	C	G	1522.75	PASS	AC=1;AF=0.5;AN=2;DP=669;MQ=60;set=variant14-variant15-variant24-variant25-variant39	GT:AD:DP:GQ:PL:SB	0/1:74,64:138:99:1767,0,2081:32,42,28,36
chr1	222919748	.	G	A	247.51	PASS	AC=1;AF=0.838;AN=2;DP=350;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,117:3,1,3,1
chr1	222919895	.	T	G	1975.15	PASS	AC=1;AF=0.725;AN=2;DP=2103;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:908,0,611:13,9,20,11
chr1	222923001	.	A	G	2148.17	PASS	AC=1;AF=0.725;AN=2;DP=2407;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1282,0,1206:22,23,20,22
chr1	222923351	.	A	G	1800.59	PASS	AC=1;AF=0.807;AN=2;DP=3244;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,51:93:99:1456,0,932:23,19,24,27
chr1	222923839	.	A	G	2473.48	PASS	AC=1;AF=0.841;AN=2;DP=3334;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,38:87:99:960,0,1221:31,18,21,17
chr1	223101939	.	A	C	241.62	PASS	AC=1;AF=0.574;AN=2;DP=434;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:190,0,301:5,6,2,6
chr1	223116472	.	G	A	3746.91	PASS	AC=1;AF=0.5;AN=2;DP=2634;MQ=60;set=variant11-variant15-variant16-variant17-variant19-variant22-variant25-variant26-variant27-variant31-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,103:226:99:4037,0,6177:64,59,52,51
chr1	223116474	.	G	T	3746.91	PASS	AC=1;AF=0.5;AN=2;DP=2652;MQ=60;set=variant11-variant15-variant16-variant17-variant19-variant22-variant25-variant26-variant27-variant31-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,107:226:99:4037,0,6177:61,58,55,52
chr1	223152868	.	G	A	1082.3	PASS	AC=2;AF=0.989;AN=2;DP=1189;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:1020,83,0:0,0,23,5
chr1	223156280	.	C	CT,CTT	72.77	PASS	AC=0,2;AF=0.033,0.633;AN=2;DP=133;FS=0;MQ=60;set=variant2-variant11-variant15-variant16-variant17-variant18-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant39-variant41	GT:DP:GQ:SB	2/2:10:30:0,0,9,1
chr1	223156382	.	C	T	2214.62	PASS	AC=2;AF=1;AN=2;DP=2570;FS=0;MQ=60;MQRankSum=1.253;ReadPosRankSum=0.879;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2892,273,0:0,0,52,39
chr1	223168213	.	T	C	1153.41	PASS	AC=2;AF=0.6;AN=2;DP=951;MQ=60;set=variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1744,170,0:0,0,34,23
chr1	223177574	.	A	G	1470.88	PASS	AC=2;AF=0.571;AN=2;DP=2947;MQ=60;set=variant-variant2-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3070,264,0:0,0,47,41
chr1	223283910	.	A	G	3751.74	PASS	AC=2;AF=1;AN=2;DP=4090;FS=0;MQ=60;MQRankSum=1.591;ReadPosRankSum=1.704;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3466,327,0:0,0,59,50
chr1	223286191	.	G	A	1864.45	PASS	AC=1;AF=0.5;AN=2;DP=367;FractionInformativeReads=1;set=variant15-variant16-variant19	GT:AD:DP:GQ:PL:SB	0/1:82,75:157:99:1893,0,2126:45,37,33,42
chr1	223397037	.	T	C	988.94	PASS	AC=1;AF=0.625;AN=2;DP=1036;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant9-variant10-variant12-variant15-variant18-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:850,0,657:9,17,12,21
chr1	223532570	.	T	C	1237.87	PASS	AC=1;AF=0.558;AN=2;DP=2122;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,48:91:99:1207,0,1038:18,25,19,29
chr1	223533276	.	C	CAG	142.73	PASS	AC=1;AF=0.647;AN=2;DP=114;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant13-variant15-variant18-variant21-variant24-variant25-variant32-variant33-variant34-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:234,0,261:6,0,5,1
chr1	223537285	.	CA	C,CAA	101.87	PASS	AC=1,0;AF=0.485,0.015;AN=2;DP=2174;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant9-variant11-variant13-variant15-variant17-variant18-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:DP:GQ:SB	0/1:60:99:22,20,8,10
chr1	223537385	.	A	G	3787.22	PASS	AC=2;AF=0.872;AN=2;DP=6148;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,169:170:99:4776,496,0:1,0,88,81
chr1	223567803	.	G	A	1671.7	PASS	AC=1;AF=0.545;AN=2;DP=3052;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant21-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:83,70:153:99:1855,0,2097:38,45,28,42
chr1	223568757	.	T	C	1006.91	PASS	AC=1;AF=0.5;AN=2;DP=277;MQ=60;set=variant15-variant19-variant23	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1035,0,1373:23,32,22,27
chr1	223714950	.	G	A	356.06	PASS	AC=1;AF=0.878;AN=2;DP=877;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:315,0,352:10,5,10,5
chr1	223715248	.	GT	G	949.48	PASS	AC=1;AF=0.697;AN=2;DP=3493;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,65:123:99:2052,0,1779:26,32,32,33
chr1	223715479	.	T	TAC	348.32	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=4.706;FractionInformativeReads=0.84;MQ=60;MQRankSum=0.249;QD=13.93;ReadPosRankSum=0.107;SOR=0.148;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:386,0,252:1,8,4,8
chr1	223716349	.	G	A	1338.7	PASS	AC=1;AF=0.854;AN=2;DP=4364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,60:126:99:1449,0,1644:39,27,36,24
chr1	223717379	.	A	C	895.26	PASS	AC=2;AF=1;AN=2;DP=2319;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1574,143,0:1,0,28,22
chr1	223717484	.	G	A	515.84	PASS	AC=1;AF=0.829;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1238,0,887:18,18,27,21
chr1	223718462	.	G	A	103.44	PASS	AC=1;AF=0.829;AN=2;DP=1536;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:662,0,415:10,4,14,10
chr1	223718518	.	C	A	377.71	PASS	AC=1;AF=0.829;AN=2;DP=2959;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,47:79:99:1176,0,824:23,9,27,20
chr1	223718651	.	G	A	1045.79	PASS	AC=1;AF=0.684;AN=2;DP=3903;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,39:99:99:933,0,1544:28,32,16,23
chr1	223718670	.	G	A	1155.94	PASS	AC=1;AF=0.684;AN=2;DP=3749;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,42:93:99:1089,0,1350:22,29,18,24
chr1	223718764	.	C	T	112.92	PASS	AC=1;AF=0.577;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant24-variant26-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:458,0,582:12,14,4,12
chr1	223722646	.	T	TA	120.04	PASS	AC=1;AF=0.842;AN=2;DP=533;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:71:71,0,338:9,6,4,1
chr1	223722780	.	G	A	554.78	PASS	AC=1;AF=0.684;AN=2;DP=2714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1134,0,1296:27,20,24,22
chr1	223728083	.	A	T	34.27	PASS	AC=2;AF=1;AN=2;DP=29;FS=0;FractionInformativeReads=1;set=filterInvariant3-variant8-filterInvariant9-variant15-variant17-variant19-filterInvariant24-filterInvariant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:145,12,0:0,0,0,4
chr1	223799857	.	C	T	1206.46	PASS	AC=1;AF=0.711;AN=2;DP=6593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,84:168:99:2251,0,2274:43,41,44,40
chr1	223799871	.	C	T	1373.02	PASS	AC=1;AF=0.684;AN=2;DP=6723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,95:180:99:2379,0,2251:41,44,47,48
chr1	223804932	.	A	T	537.67	PASS	AC=1;AF=0.684;AN=2;DP=989;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,32:49:99:887,0,377:11,6,20,12
chr1	223804982	.	TG	T,TGG,TTTGG,TTGG,TGGG	427.89	PASS	AC=1,1,0,0,0;AF=0.421,0.053,0.158,0.053,0.026;AN=2;DP=781;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant3-variant19-variant24-variant26-variant27-variant28-variant38-variant41-variant44	GT:DP:GQ:SB	1/2:50:99:2,1,30,17
chr1	223805032	.	T	TTTTG	1199.53	PASS	AC=1;AF=0.684;AN=2;DP=2821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,52:96:99:2081,0,1605:22,22,27,25
chr1	223805231	.	T	G	1875.73	PASS	AC=1;AF=0.711;AN=2;DP=4498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,69:148:99:1764,0,2101:36,43,34,35
chr1	223805504	.	T	C	808.97	PASS	AC=1;AF=0.711;AN=2;DP=2558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:956,0,813:11,19,14,23
chr1	223805804	.	C	T	1148.18	PASS	AC=1;AF=0.607;AN=2;DP=1340;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant24-variant26-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,62:123:99:1518,0,1678:36,25,38,24
chr1	223807239	.	C	G	818.6	PASS	AC=1;AF=0.615;AN=2;DP=1168;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant24-variant26-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,51:108:99:1208,0,1518:25,32,24,27
chr1	223807262	.	G	A	798.63	PASS	AC=1;AF=0.615;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant24-variant26-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,47:104:99:1020,0,1563:25,32,23,24
chr1	223814682	.	A	T	627.56	PASS	AC=1;AF=0.615;AN=2;DP=791;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant24-variant26-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,25:63:99:590,0,1056:23,15,16,9
chr1	223815575	.	G	A	108.47	PASS	AC=1;AF=0.75;AN=2;DP=1421;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:570,0,527:13,5,14,4
chr1	223816322	.	A	G	921.14	PASS	AC=1;AF=0.75;AN=2;DP=4219;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,71:122:99:1745,0,1153:22,29,32,39
chr1	223816347	.	A	G	793.88	PASS	AC=1;AF=0.75;AN=2;DP=4264;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,67:117:99:1804,0,1264:21,29,31,36
chr1	223830566	.	G	A	1038.62	PASS	AC=1;AF=0.621;AN=2;DP=2513;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1041,0,984:17,25,17,23
chr1	223841913	.	C	A	783.17	PASS	AC=1;AF=0.625;AN=2;DP=1458;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:639,0,695:18,5,17,8
chr1	223853440	.	A	G	996.69	PASS	AC=2;AF=1;AN=2;DP=1683;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1389,114,0:0,0,8,30
chr1	223900408	.	C	G	9068.64	PASS	AC=2;AF=1;AN=2;DP=15689;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,390:390:99:11655,1168,0:0,0,213,177
chr1	223905532	.	G	A	2095.33	PASS	AC=2;AF=0.821;AN=2;DP=4198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3414,327,0:0,0,48,61
chr1	223931648	.	T	C	1625.51	PASS	AC=2;AF=1;AN=2;DP=2020;FS=0;MQ=60;MQRankSum=1.33;ReadPosRankSum=1.652;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1903,188,0:0,0,41,22
chr1	223934720	.	G	A	5105.78	PASS	AC=2;AF=0.898;AN=2;DP=9016;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,249:250:99:7671,740,0:1,0,118,131
chr1	223954080	.	A	C	3678.44	PASS	AC=1;AF=0.588;AN=2;DP=1733;MQ=60;set=variant-variant8-variant11-variant15-variant16-variant19-variant20-variant21-variant25-variant26-variant28-variant35-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,59:115:99:1534,0,1399:31,25,33,26
chr1	223962929	.	G	A	2218.61	PASS	AC=1;AF=0.638;AN=2;DP=2001;MQ=60;set=variant-variant8-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,30:72:99:661,0,1242:16,26,10,20
chr1	224139955	.	G	A	570.87	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;set=variant15-variant22-variant33	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:599,0,515:13,9,15,11
chr1	224191284	.	A	G	114.83	PASS	AC=2;AF=0.988;AN=2;DP=295;FS=0;FractionInformativeReads=1;MQRankSum=-0.731;ReadPosRankSum=0.731;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:363,36,0:0,0,5,7
chr1	224218428	.	C	T	71.04	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=24;FS=2.066;FractionInformativeReads=1;MQ=25.34;MQRankSum=-1.833;QD=2.96;ReadPosRankSum=-0.1;SOR=1.609;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:99,0,366:11,7,5,1
chr1	224218544	.	G	T	136.04	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=35;FS=1.421;FractionInformativeReads=1;MQ=27.49;MQRankSum=0.515;QD=3.89;ReadPosRankSum=0.586;SOR=0.426;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:164,0,482:9,15,5,6
chr1	224301749	.	C	T	325.85	PASS	AC=2;AF=0.667;AN=2;DP=2798;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3164,317,0:0,0,61,45
chr1	224302154	.	T	TGAG	997.54	PASS	AC=2;AF=1;AN=2;DP=2537;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2478,171,0:0,0,20,37
chr1	224302230	.	C	G	124.69	PASS	AC=2;AF=0.667;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:324,27,0:0,0,2,7
chr1	224318151	.	T	TTTG	2042.05	PASS	AC=2;AF=1;AN=2;DP=1619;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2833,193,0:0,0,43,19
chr1	224321984	.	C	T	1504.42	PASS	AC=2;AF=1;AN=2;DP=2147;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.555;ReadPosRankSum=1.2;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2239,206,0:0,0,20,49
chr1	224345012	.	G	A	667.58	PASS	AC=2;AF=1;AN=2;DP=1141;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1492,126,0:0,0,33,9
chr1	224346959	.	G	A	4561.57	PASS	AC=2;AF=0.653;AN=2;DP=10861;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,411:411:99:12511,1230,0:0,0,209,202
chr1	224347291	.	G	A	5087.87	PASS	AC=2;AF=0.988;AN=2;DP=5158;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,143:144:99:4536,385,0:0,1,67,76
chr1	224347391	.	C	T	6427.51	PASS	AC=2;AF=0.988;AN=2;DP=6510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5225,495,0:0,0,93,72
chr1	224347433	.	C	T	8514.41	PASS	AC=2;AF=1;AN=2;DP=9806;FS=0;MQ=60;MQRankSum=-0.293;ReadPosRankSum=0.18;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:7583,741,0:0,0,144,104
chr1	224347918	.	G	C	15904.7	PASS	AC=2;AF=0.988;AN=2;DP=15575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,466:466:99:14764,1397,0:0,0,208,258
chr1	224348506	.	A	G	14660.4	PASS	AC=2;AF=1;AN=2;DP=15919;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,464:464:99:14452,1391,0:0,0,209,255
chr1	224348700	.	T	C	12643.2	PASS	AC=2;AF=0.988;AN=2;DP=13228;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,391:391:99:12230,1171,0:0,0,203,188
chr1	224348818	.	T	C	3993.41	PASS	AC=2;AF=0.653;AN=2;DP=11497;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,411:411:99:18247,1252,0:0,0,188,223
chr1	224348827	.	A	G	12976.5	PASS	AC=2;AF=0.988;AN=2;DP=13193;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,403:403:99:17982,1225,0:0,0,184,219
chr1	224348915	.	A	G	6720.86	PASS	AC=2;AF=0.988;AN=2;DP=7971;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,255:255:99:8288,764,0:0,0,114,141
chr1	224444628	.	C	T	3305.16	PASS	AC=2;AF=0.977;AN=2;DP=4453;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3634,363,0:0,0,74,47
chr1	224444901	.	G	C	129.73	PASS	AC=2;AF=1;AN=2;DP=246;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:215,21,0:0,0,2,5
chr1	224468986	.	CGT	CGTGTGTGT,CGTGT,CGTGTGT,C	310.05	PASS	AC=0,1,1,0;AF=0.047,0.469,0.188,0.016;AN=2;DP=876;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant21-variant22-variant8-variant23-variant6-variant25-variant27-variant29-variant30-variant20-variant32-variant34-variant35-variant36-variant24-variant38-filterInvariant-variant40-variant41	GT:DP:GQ:SB	2/3:28:99:1,1,5,21
chr1	224482216	.	T	C	1018.5	PASS	AC=2;AF=0.932;AN=2;DP=1035;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1221,114,0:0,0,12,26
chr1	224491264	.	T	A	573.32	PASS	AC=2;AF=1;AN=2;DP=860;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1252,93,0:0,0,28,3
chr1	224492381	.	C	T	1524.39	PASS	AC=2;AF=1;AN=2;DP=2155;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2414,236,0:0,0,54,25
chr1	224492746	.	C	T	4419.33	PASS	AC=2;AF=0.943;AN=2;DP=6274;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3935,395,0:0,0,70,62
chr1	224495852	.	C	T	4023.93	PASS	AC=2;AF=0.943;AN=2;DP=5355;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4477,456,0:0,0,69,84
chr1	224505570	.	T	TAA	1818.86	PASS	AC=2;AF=1;AN=2;DP=2023;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3050,208,0:0,0,33,36
chr1	224505719	.	T	G	283.54	PASS	AC=2;AF=1;AN=2;DP=241;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:271,21,0:0,0,1,6
chr1	224514275	.	G	A	322.54	PASS	AC=2;AF=1;AN=2;DP=499;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:628,48,0:0,0,1,15
chr1	224517842	.	C	T	2060.99	PASS	AC=2;AF=0.943;AN=2;DP=5295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4958,496,0:0,0,73,93
chr1	224517907	.	A	T	1443.27	PASS	AC=2;AF=0.943;AN=2;DP=3901;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3864,348,0:0,0,53,64
chr1	224518074	.	T	C	572.45	PASS	AC=2;AF=0.943;AN=2;DP=1414;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1180,96,0:0,0,5,27
chr1	224518143	.	T	C	180.3	PASS	AC=2;AF=0.977;AN=2;DP=418;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:181,15,0:0,0,1,4
chr1	224544529	.	A	G	3274.98	PASS	AC=1;AF=0.825;AN=2;DP=4886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,74:165:99:2068,0,2581:62,29,51,23
chr1	224564374	.	C	T	614.71	PASS	AC=1;AF=0.6;AN=2;DP=982;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant23-variant24-variant26-variant29-variant31-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:975,0,1017:21,19,20,22
chr1	224564490	.	TTA	T	596.74	PASS	AC=1;AF=0.6;AN=2;DP=711;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant23-variant24-variant26-variant29-variant31-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:1147,0,1225:13,19,14,16
chr1	224565178	.	C	T	42.2	PASS	AC=1;AF=0.667;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant15-variant18-variant24-variant26-variant29-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:137,0,132:0,4,1,4
chr1	224566216	.	A	G	2636.63	PASS	AC=1;AF=0.6;AN=2;DP=3749;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant23-variant24-variant26-variant29-variant31-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:177,156:333:99:3763,0,4284:79,98,69,87
chr1	224567004	.	G	A	989.51	PASS	AC=1;AF=0.825;AN=2;DP=1381;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,26:39:99:666,0,340:5,8,11,15
chr1	224567136	.	T	C	96.15	PASS	AC=1;AF=0.6;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant23-variant29-variant34	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:404,0,205:3,3,7,9
chr1	224573601	.	C	T	3261.69	PASS	AC=1;AF=0.611;AN=2;DP=4965;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant23-variant24-variant26-variant29-variant31-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:140,192:332:99:5401,0,3699:72,68,96,96
chr1	224575018	.	C	T	1541.16	PASS	AC=1;AF=0.6;AN=2;DP=2136;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant23-variant24-variant26-variant29-variant31-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,91:166:99:2433,0,1910:28,47,35,56
chr1	224575373	.	G	A	6836.53	PASS	AC=2;AF=0.955;AN=2;DP=6902;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6479,616,0:0,0,102,104
chr1	224575831	.	C	CT	2667.01	PASS	AC=1;AF=0.825;AN=2;DP=2677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,43:87:99:1271,0,1291:19,25,24,19
chr1	224585958	.	A	C	731.6	PASS	AC=1;AF=0.611;AN=2;DP=1131;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant23-variant24-variant26-variant29-variant31-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1207,0,722:11,18,14,28
chr1	224588825	.	T	A	250.4	PASS	AC=1;AF=0.639;AN=2;DP=200;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant23-variant24-variant26-variant29-variant31-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:151,0,157:2,4,1,4
chr1	224600910	.	C	A	2558.04	PASS	AC=2;AF=0.909;AN=2;DP=3701;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:14,84:98:47:1572,47,0:2,12,44,40
chr1	224600920	.	C	A	2613.74	PASS	AC=2;AF=0.989;AN=2;DP=3778;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,103:105:99:2896,255,0:1,1,48,55
chr1	224621368	.	G	C	2445.47	PASS	AC=2;AF=1;AN=2;DP=3707;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3319,297,0:0,0,69,30
chr1	224621934	.	G	C	1045.12	PASS	AC=1;AF=0.6;AN=2;DP=1664;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant23-variant24-variant26-variant29-variant31-variant34-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,69:149:99:1438,0,1789:39,41,29,40
chr1	224926997	.	CTTTTTT	CTTTT,CTTTTT,CT,CTT,CTTT,C	151.64	PASS	AC=0,0,0,0,0,1;AF=0.063,0.104,0.083,0.104,0.167,0.021;AN=2;DP=686;set=variant2-filterInvariant3-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant22-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant44	GT:DP:GQ:SB	0/6:44:99:16,16,5,7
chr1	224927217	.	C	T	879.76	PASS	AC=1;AF=0.603;AN=2;DP=1845;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:900,0,1062:18,23,14,18
chr1	225117561	.	T	C	2558.37	PASS	AC=1;AF=0.577;AN=2;DP=2575;MQ=60;set=variant2-variant3-variant4-variant8-variant13-variant14-variant15-variant16-variant17-variant25-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:140,130:270:99:3140,0,3598:53,87,48,82
chr1	225142710	.	A	T	1109.75	PASS	AC=1;AF=0.5;AN=2;DP=459;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant15-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:36,23:59:99:509,0,836:18,18,11,12
chr1	225152253	.	C	T	1038.02	PASS	AC=1;AF=0.5;AN=2;DP=232;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant25	GT:AD:DP:GQ:PL:SB	0/1:26,44:70:99:1074,0,506:12,14,20,24
chr1	225161877	.	A	G	1710.63	PASS	AC=1;AF=0.5;AN=2;DP=675;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant15-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:57,40:97:99:924,0,1335:28,29,22,18
chr1	225211422	.	T	C	1884.6	PASS	AC=1;AF=0.5;AN=2;DP=885;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant15-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:62,73:135:99:1718,0,1356:30,32,38,35
chr1	225211684	.	G	A	5131.07	PASS	AC=2;AF=0.942;AN=2;DP=6336;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5293,550,0:0,0,99,85
chr1	225211794	.	A	G	1282.09	PASS	AC=1;AF=0.5;AN=2;DP=683;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant15-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:59,61:120:99:1485,0,1645:17,42,24,37
chr1	225211934	.	G	A	2424.3	PASS	AC=2;AF=1;AN=2;DP=2755;FS=0;MQ=60;MQRankSum=0.052;ReadPosRankSum=2.346;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2919,270,0:0,0,49,41
chr1	225212040	.	T	A	3629.75	PASS	AC=2;AF=0.942;AN=2;DP=4482;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4560,449,0:0,0,87,63
chr1	225230608	.	C	T	5070.83	PASS	AC=2;AF=0.93;AN=2;DP=6115;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4578,458,0:0,0,80,73
chr1	225237850	.	A	C	718.23	PASS	AC=2;AF=0.93;AN=2;DP=504;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:852,72,0:0,0,19,5
chr1	225266966	.	C	G	1747.24	PASS	AC=2;AF=0.93;AN=2;DP=2595;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2454,228,0:0,0,41,35
chr1	225268343	.	A	G	4311.43	PASS	AC=2;AF=0.93;AN=2;DP=5654;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:7489,514,0:0,0,80,87
chr1	225268346	.	G	A	4311.43	PASS	AC=2;AF=0.93;AN=2;DP=5591;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:7464,511,0:0,0,78,88
chr1	225270409	.	A	T	2428.63	PASS	AC=1;AF=0.869;AN=2;DP=3065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1044,0,1190:18,29,17,28
chr1	225273248	.	G	T	1818.08	PASS	AC=2;AF=0.93;AN=2;DP=1908;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2144,220,0:0,0,45,29
chr1	225273633	.	T	A	189.55	PASS	AC=2;AF=0.962;AN=2;DP=235;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:530,36,0:0,0,0,12
chr1	225311312	.	C	T	1505.57	PASS	AC=1;AF=0.5;AN=2;DP=822;MQ=60;set=variant3-variant4-variant8-variant15-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:55,75:130:99:1692,0,1140:27,28,35,40
chr1	225328440	.	T	G	118.24	PASS	AC=1;AF=0.5;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:299,0,240:7,2,9,3
chr1	225380561	.	CAAAG	C	1401.04	PASS	AC=1;AF=0.5;AN=2;DP=407;MQ=60;set=variant3-variant4-variant8-variant15-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:1005,0,1600:12,17,10,16
chr1	225439988	.	T	C	1391.04	PASS	AC=1;AF=0.587;AN=2;DP=2690;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,75:144:99:1800,0,1658:34,35,39,36
chr1	225445652	.	G	T	346.79	PASS	AC=1;AF=0.591;AN=2;DP=519;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:375,0,336:7,4,9,3
chr1	225452983	.	A	G	1051.43	PASS	AC=1;AF=0.5;AN=2;DP=746;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant15-variant25-variant30-variant32	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1311,0,1603:33,27,32,28
chr1	225460626	.	T	A	179.24	PASS	AC=1;AF=0.583;AN=2;DP=516;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:86:86,0,230:5,3,4,0
chr1	225477491	.	C	T	709.42	PASS	AC=1;AF=0.614;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant30-variant32-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:319,0,437:11,1,9,1
chr1	225477546	.	A	C	1834.07	PASS	AC=1;AF=0.609;AN=2;DP=1044;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant30-variant32-variant34-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:751,0,714:19,10,20,10
chr1	225477793	.	T	G	856.63	PASS	AC=1;AF=0.609;AN=2;DP=704;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant30-variant32-variant34-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:465,0,619:3,15,3,11
chr1	225477869	.	A	G	85.3	PASS	AC=1;AF=0.615;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant10-variant15-variant20-variant21-variant23-variant25-variant26-variant29-variant30-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:138,0,106:0,3,1,4
chr1	225488441	.	TA	T	73.86	PASS	AC=1;AF=0.5;AN=2;DP=52;MQ=60;set=variant4-variant8-variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:93:93,0,261:10,1,4,1
chr1	225492545	.	A	G	527.54	PASS	AC=1;AF=0.609;AN=2;DP=375;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant30-variant32-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:300,0,396:10,3,8,2
chr1	225492845	.	C	T	750.25	PASS	AC=1;AF=0.604;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant30-variant32-variant34-variant35-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,26:39:99:686,0,333:3,10,10,16
chr1	225506262	.	G	A	1147.52	PASS	AC=1;AF=0.563;AN=2;DP=1722;MQ=60;set=variant2-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,72:143:99:1799,0,1814:44,27,45,27
chr1	225512402	.	GT	G	1506.54	PASS	AC=1;AF=0.563;AN=2;DP=2096;MQ=60;set=variant2-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,69:136:99:1827,0,1755:41,26,43,26
chr1	225528183	.	C	A	3139.64	PASS	AC=1;AF=0.643;AN=2;DP=2807;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,60:114:99:1482,0,1505:31,23,37,23
chr1	225533684	.	A	G	1852.57	PASS	AC=1;AF=0.643;AN=2;DP=1911;MQ=60;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,47:109:99:1030,0,1487:36,26,29,18
chr1	225534219	.	T	C	4200.39	PASS	AC=1;AF=0.643;AN=2;DP=3226;MQ=60;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,69:166:99:1596,0,2428:45,52,32,37
chr1	225534348	.	G	A	1494.63	PASS	AC=1;AF=0.643;AN=2;DP=1012;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:709,0,808:11,21,8,20
chr1	225539665	.	T	A	729.81	PASS	AC=1;AF=0.708;AN=2;DP=549;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:235,0,310:1,8,2,6
chr1	225541372	.	A	G	145.15	PASS	AC=1;AF=0.714;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant29-variant32-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:150,0,151:4,1,4,0
chr1	225545580	.	A	C	2057.04	PASS	AC=1;AF=0.583;AN=2;DP=1485;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1653,0,2554:14,30,9,33
chr1	225545588	.	A	G	603.69	PASS	AC=1;AF=0.563;AN=2;DP=860;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:1656,0,2515:14,29,9,33
chr1	225546172	.	C	G	835.68	PASS	AC=1;AF=0.583;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:362,0,367:9,2,10,2
chr1	225552624	.	G	A	724.18	PASS	AC=1;AF=0.63;AN=2;DP=859;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:541,0,400:10,10,12,13
chr1	225552650	.	C	T	565.24	PASS	AC=1;AF=0.63;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:493,0,373:9,10,10,11
chr1	225555512	.	C	T	4988.56	PASS	AC=1;AF=0.705;AN=2;DP=5650;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,84:164:99:2116,0,2073:43,37,42,42
chr1	225555602	.	T	G	4399.21	PASS	AC=1;AF=0.718;AN=2;DP=4330;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,77:130:99:2062,0,1101:25,28,30,47
chr1	225562385	.	C	T	2884.76	PASS	AC=2;AF=0.917;AN=2;DP=3275;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3361,330,0:0,0,67,43
chr1	225565015	.	T	C	1361.56	PASS	AC=1;AF=0.829;AN=2;DP=2173;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,33:84:99:700,0,1199:26,25,20,13
chr1	225565073	.	C	T	1433.78	PASS	AC=1;AF=0.784;AN=2;DP=2185;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,35:88:99:887,0,1457:24,29,15,20
chr1	225567813	.	C	T	521.45	PASS	AC=1;AF=0.5;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant15-variant18-variant25-variant30-variant32-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:907,0,668:17,11,23,4
chr1	225569241	.	T	G	2505.12	PASS	AC=1;AF=0.824;AN=2;DP=2219;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,53:93:99:1343,0,1072:17,23,22,31
chr1	225576058	.	T	C	1984.49	PASS	AC=1;AF=0.824;AN=2;DP=2168;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:759,0,1191:23,21,17,13
chr1	225576311	.	A	G	718.07	PASS	AC=1;AF=0.784;AN=2;DP=1007;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:487,0,437:1,13,7,11
chr1	225577648	.	C	T	958.57	PASS	AC=1;AF=0.784;AN=2;DP=1253;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:848,0,763:5,18,6,23
chr1	225579918	.	A	T	654.81	PASS	AC=1;AF=0.5;AN=2;DP=234;MQ=60;set=variant5-variant7-variant15-variant18-variant25-variant30-variant32-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:357,0,556:14,2,10,2
chr1	225589644	.	A	G	3081.72	PASS	AC=1;AF=0.5;AN=2;DP=2378;MQ=60;set=variant5-variant7-variant15-variant18-variant25-variant30-variant32-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:179,163:342:99:4321,0,4694:88,91,87,76
chr1	225591995	.	C	T	396.52	PASS	AC=1;AF=0.5;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant15-variant18-variant25-variant30-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:322,0,558:13,5,6,7
chr1	225601647	.	C	T	1401.32	PASS	AC=1;AF=0.838;AN=2;DP=2538;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:531,0,1068:19,20,14,12
chr1	225602823	.	A	T	415.3	PASS	AC=1;AF=0.5;AN=2;DP=267;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant15-variant18-variant25-variant30-variant32-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:573,0,534:13,7,15,8
chr1	225603103	.	C	T	530.25	PASS	AC=2;AF=0.94;AN=2;DP=602;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:634,62,0:0,0,6,15
chr1	225607144	.	C	T	931.19	PASS	AC=2;AF=0.929;AN=2;DP=1509;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1719,153,0:0,0,13,38
chr1	225609763	.	G	A	553.21	PASS	AC=1;AF=0.5;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant15-variant18-variant25-variant30-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:53,26:79:99:666,0,1346:32,21,18,8
chr1	225609884	.	A	G	2925.75	PASS	AC=2;AF=0.905;AN=2;DP=4147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4009,378,0:0,0,67,59
chr1	225611661	.	C	T	3024.8	PASS	AC=2;AF=0.875;AN=2;DP=3398;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3193,335,0:0,0,67,45
chr1	225611845	.	C	T	1309.29	PASS	AC=2;AF=0.776;AN=2;DP=1294;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1140,96,0:0,0,7,25
chr1	225615566	.	G	C	1397.97	PASS	AC=2;AF=0.897;AN=2;DP=1821;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1679,159,0:0,0,36,17
chr1	225680555	.	C	CATTT	3049.93	PASS	AC=2;AF=1;AN=2;DP=2404;FS=0;MQ=60;MQRankSum=0.668;ReadPosRankSum=0.911;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:3028,207,0:0,0,53,12
chr1	225680980	.	A	C	8292.94	PASS	AC=2;AF=0.955;AN=2;DP=10360;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,304:304:99:9151,911,0:0,0,153,151
chr1	225681766	.	CAAA	CAAAAAAA,CAAAAAAAA,CAAAAAA,CAAAAAAAAA,CAAAAA,CAAAA,CAAAAAAAAAAA,CAA,CAAAAAAAAAA,CAAAAAAAAAAAA,C,CA	1161.28	PASS	AC=0,1,0,0,0,0,0,0,0,0,0,0;AF=0.085,0.159,0.134,0.024,0.073,0.085,0.012,0.012,0.024,0.012,0.012,0.012;AN=2;DP=2403;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:44:32:10,1,17,16
chr1	225682175	.	C	T	10938.2	PASS	AC=2;AF=0.917;AN=2;DP=16361;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,425:425:99:13222,1272,0:0,0,240,185
chr1	225682560	.	G	A	2525.13	PASS	AC=2;AF=0.833;AN=2;DP=3117;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2562,258,0:0,0,36,50
chr1	225683158	.	GTT	GTTTT,GTTTTT,G,GTTTTTT,GTTT,GT	2314.66	PASS	AC=1,0,0,0,0,0;AF=0.452,0.06,0.06,0.012,0.024,0.012;AN=2;DP=11650;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:174:99:53,18,19,84
chr1	225685621	.	TAAG	T	1248	PASS	AC=2;AF=0.833;AN=2;DP=1549;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2306,157,0:0,0,14,38
chr1	225707033	.	ATCCAGGCGTTCCTGCCGC	A	1099.29	PASS	AC=1;AF=0.5;AN=2;DP=1976;MQ=60;set=variant-variant5-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:1212,0,5496:9,33,4,30
chr1	225974531	.	A	G	1158.91	PASS	AC=1;AF=0.676;AN=2;DP=2849;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1008,0,1198:20,30,17,24
chr1	225997689	.	T	C	177.6	PASS	AC=1;AF=0.667;AN=2;DP=712;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:343,0,292:8,5,9,5
chr1	225997741	.	C	A	285.78	PASS	AC=1;AF=0.652;AN=2;DP=1332;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:421,0,540:13,11,10,10
chr1	225997973	.	G	A	173.94	PASS	AC=1;AF=0.703;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:94:94,0,156:2,3,1,3
chr1	226013355	.	C	T	85.48	PASS	AC=1;AF=0.615;AN=2;DP=84;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant15-variant16-variant22-variant23-variant24-variant25-variant29-variant30-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:120,0,76:0,2,1,2
chr1	226019653	.	G	A	838.66	PASS	AC=1;AF=0.5;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant20-variant24-variant25-variant29-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1165,0,1055:24,23,20,28
chr1	226019774	.	G	C	191.3	PASS	AC=1;AF=0.744;AN=2;DP=772;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:589,0,334:4,9,3,15
chr1	226026406	.	A	G	1663.4	PASS	AC=1;AF=0.5;AN=2;DP=2540;MQ=60;set=variant2-variant6-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant27-variant29-variant32-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,91:168:99:2371,0,1946:51,26,60,31
chr1	226026795	.	G	A	395.92	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant6-variant14-variant15-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:610,0,471:10,6,14,6
chr1	226027067	.	GGTGTGTGT	GGTGTGTGTGT,GGTGTGTGTGTGT,GGTGT,GGTGTGT,GGT,GGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGT,G	77.7	PASS	AC=0,1,0,0,0,0,0,0,0;AF=0.181,0.125,0.056,0.069,0.028,0.014,0.056,0.056,0.014;AN=2;DP=1111;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-filterInvariant25-variant27-variant28-variant29-variant30-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:13:99:2,6,1,4
chr1	226032018	.	G	A	231.35	PASS	AC=1;AF=0.5;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant14-variant15-variant18-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:534,0,441:11,2,11,4
chr1	226032156	.	GC	G	1884.7	PASS	AC=1;AF=0.5;AN=2;DP=888;MQ=60;set=variant6-variant14-variant15-variant18-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:87,83:170:99:3255,0,5217:44,43,47,36
chr1	226032158	.	AT	A	1941.16	PASS	AC=1;AF=0.5;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant6-variant14-variant15-variant18-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:85,84:169:99:3289,0,5319:43,42,48,36
chr1	226032160	.	GTGGC	G	1935.49	PASS	AC=1;AF=0.5;AN=2;DP=916;FractionInformativeReads=1;MQ=60;set=variant6-variant14-variant15-variant18-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:93,86:179:99:3280,0,5474:46,47,49,37
chr1	226033421	.	G	A	730.91	PASS	AC=1;AF=0.5;AN=2;DP=459;MQ=60;set=variant6-variant14-variant15-variant18-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:61,46:107:99:1654,0,2351:29,32,23,23
chr1	226033439	.	G	A	487.39	PASS	AC=1;AF=0.5;AN=2;DP=472;MQ=60;set=variant6-variant14-variant15-variant18-variant21-variant38	GT:AD:DP:GQ:PL:SB	0/1:59,49:108:99:1638,0,2282:27,32,24,25
chr1	226033476	.	A	G	875.11	PASS	AC=1;AF=0.611;AN=2;DP=2487;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant15-variant16-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,68:115:99:1869,0,1161:21,26,35,33
chr1	226034182	.	C	T	1731.93	PASS	AC=1;AF=0.5;AN=2;DP=155;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.446;QD=11.17;ReadPosRankSum=-1.859;SOR=0.724;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:79,76:155:99:1760,0,1969:42,37,41,35
chr1	226036309	.	A	G	1346.1	PASS	AC=2;AF=0.725;AN=2;DP=3745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2668,271,0:0,0,44,47
chr1	226044489	.	G	GC	1089.1	PASS	AC=2;AF=1;AN=2;DP=1719;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1334,123,0:0,0,20,20
chr1	226044766	.	G	A	1562.97	PASS	AC=1;AF=0.625;AN=2;DP=1060;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:759,0,891:8,22,13,19
chr1	226046648	.	ATGTGTGTGTGTGTGTG	ATGTGTGTG,ATGTGTGTGTG,ATGTG,ATGTGTGTGTGTG,ATGTGTGTGTGTGTG,ATGTGTG,A	322.97	PASS	AC=1,0,0,0,0,0,0;AF=0.425,0.188,0.1,0.088,0.038,0.075,0.013;AN=2;DP=506;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:10:99:2,4,4,0
chr1	226050815	.	A	G	283.54	PASS	AC=1;AF=0.94;AN=2;DP=278;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,163:1,3,1,3
chr1	226050832	.	T	C	241.77	PASS	AC=1;AF=0.94;AN=2;DP=232;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:76:165,0,76:0,1,1,3
chr1	226053805	.	G	A	2765.1	PASS	AC=1;AF=0.632;AN=2;DP=1676;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,48:113:99:1178,0,1640:25,40,18,30
chr1	226054333	.	G	A	2118.97	PASS	AC=1;AF=0.591;AN=2;DP=2181;MQ=60;set=variant2-variant4-variant15-variant16-variant28-variant29-variant30-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:107,99:206:99:2266,0,2726:54,53,46,53
chr1	226054681	.	T	A	1123.35	PASS	AC=1;AF=0.932;AN=2;DP=1061;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:583,0,334:11,3,14,7
chr1	226054714	.	G	A	1006.5	PASS	AC=1;AF=0.65;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,36:61:99:1027,0,617:19,6,25,11
chr1	226055595	.	G	A	1992.86	PASS	AC=1;AF=0.625;AN=2;DP=1781;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,53:95:99:1354,0,1031:23,19,34,19
chr1	226058534	.	C	G	439.59	PASS	AC=1;AF=0.932;AN=2;DP=840;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:214,0,485:12,1,6,1
chr1	226108894	.	C	T	328.6	PASS	AC=1;AF=0.5;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant29-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:917,0,1450:19,9,16,8
chr1	226108899	.	T	G	328.6	PASS	AC=1;AF=0.5;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant15-variant18-variant19-variant22-variant23-variant25-variant29-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:1011,0,1460:19,12,18,10
chr1	226110243	.	G	A	587.03	PASS	AC=1;AF=0.5;AN=2;DP=810;MQ=60;set=variant-variant2-variant6-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant29-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:772,0,927:16,17,15,16
chr1	226112074	.	GC	G	3272.2	PASS	AC=2;AF=1;AN=2;DP=3793;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3298,280,0:0,0,22,71
chr1	226125543	.	G	GA	1459.1	PASS	AC=2;AF=1;AN=2;DP=2643;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,52:54:99:1660,113,0:1,1,9,43
chr1	226179909	.	A	G	436.9	PASS	AC=1;AF=0.857;AN=2;DP=340;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:109,0,144:4,1,3,1
chr1	226180813	.	TTTC	T	304.79	PASS	AC=1;AF=0.517;AN=2;DP=857;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-filterInvariant10-variant11-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:348,0,548:2,13,1,10
chr1	226187129	.	C	T	2254.72	PASS	AC=1;AF=0.5;AN=2;DP=2216;MQ=60;set=variant5-variant6-variant15-variant18-variant22-variant24-variant31-variant33-variant35-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:85,115:200:99:2806,0,2014:31,54,42,73
chr1	226252232	.	C	T	903.58	PASS	AC=2;AF=1;AN=2;DP=1783;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1183,104,0:0,0,8,27
chr1	226253127	.	T	G	466.77	PASS	AC=2;AF=0.988;AN=2;DP=399;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;ReadPosRankSum=0.742;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:274,21,0:0,0,5,2
chr1	226253316	.	G	T	1621.03	PASS	AC=2;AF=1;AN=2;DP=1936;FS=0;MQ=60;MQRankSum=1.238;ReadPosRankSum=1.155;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1670,156,0:0,0,24,28
chr1	226253926	.	T	C	1005.93	PASS	AC=1;AF=0.625;AN=2;DP=3084;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,74:153:99:1923,0,2128:29,50,30,44
chr1	226254036	.	T	C	1869.8	PASS	AC=2;AF=1;AN=2;DP=2887;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,78:79:99:2552,191,0:0,1,38,40
chr1	226332692	.	T	TA	814.75	PASS	AC=1;AF=0.548;AN=2;DP=1957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant13-variant15-variant21-variant22-variant25-variant27-variant29-variant32-variant33-variant35-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:746,0,947:16,28,16,19
chr1	226333535	.	CCAAAA	C	3759.5	PASS	AC=1;AF=0.563;AN=2;DP=6759;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,125:241:99:4792,0,4694:68,48,74,51
chr1	226334578	.	G	A	1341.95	PASS	AC=2;AF=1;AN=2;DP=1711;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1768,165,0:0,0,16,39
chr1	226334605	.	T	C	547.57	PASS	AC=1;AF=0.531;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant10-variant14-variant15-variant18-variant24-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:714,0,322:4,10,5,18
chr1	226411317	.	C	T	569.98	PASS	AC=1;AF=0.714;AN=2;DP=3147;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:887,0,1021:25,16,23,18
chr1	226411480	.	C	G	1054.52	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0.896;FractionInformativeReads=1;MQ=60;MQRankSum=-1.446;QD=14.25;ReadPosRankSum=-0.811;SOR=0.536;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:31,43:74:99:1083,0,828:13,18,20,23
chr1	226414375	.	CAAAAAAAA	CAA,CA,C	142.87	PASS	AC=0,1,0;AF=0.083,0.25,0.458;AN=2;DP=77;FS=0;set=variant2-variant3-variant5-variant15-variant24-variant25-variant27-variant33-variant35-variant39-variant40-variant42	GT:DP:GQ:SB	0/2:7:69:2,0,2,3
chr1	226419166	.	G	C	843.28	PASS	AC=1;AF=0.703;AN=2;DP=2336;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,28:83:99:765,0,1410:31,24,16,12
chr1	226419237	.	C	G	1800.08	PASS	AC=1;AF=0.703;AN=2;DP=5752;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,89:181:99:1945,0,2224:51,41,52,37
chr1	226420722	.	A	G	1323.02	PASS	AC=1;AF=0.571;AN=2;DP=2518;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,55:95:99:1630,0,1099:16,24,19,36
chr1	226438449	.	T	C	1013.03	PASS	AC=1;AF=0.866;AN=2;DP=725;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:295,0,291:9,2,7,5
chr1	226474132	.	G	A	342.14	PASS	AC=1;AF=0.716;AN=2;DP=1642;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:473,0,517:9,12,5,11
chr1	226485327	.	A	AT	1270.46	PASS	AC=1;AF=0.729;AN=2;DP=2159;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1179,0,1117:31,14,30,17
chr1	226497419	.	G	A	4587.64	PASS	AC=1;AF=0.538;AN=2;DP=3534;MQ=60;set=variant3-variant10-variant14-variant15-variant18-variant24-variant27-variant31-variant33-variant34-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:147,170:317:99:4178,0,3914:60,87,73,97
chr1	226548554	.	A	G	3385.2	PASS	AC=1;AF=0.605;AN=2;DP=4433;MQ=60;set=variant-variant3-variant6-variant10-variant14-variant15-variant16-variant17-variant24-variant25-variant27-variant28-variant30-variant34-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,131:270:99:3324,0,3462:60,79,50,81
chr1	226549498	.	G	A	328.38	PASS	AC=1;AF=0.605;AN=2;DP=521;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant10-variant14-variant15-variant16-variant17-variant24-variant25-variant27-variant28-variant30-variant34-variant36-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:666,0,311:9,3,13,8
chr1	226550553	.	ATT	A,AT	767.33	PASS	AC=2,0;AF=0.698,0.14;AN=2;DP=1688;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:44:99:0,0,32,12
chr1	226550924	.	G	C	1402.35	PASS	AC=2;AF=0.789;AN=2;DP=1738;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,62:64:99:1856,142,0:1,1,23,39
chr1	226553485	.	A	C	1186.77	PASS	AC=2;AF=0.875;AN=2;DP=658;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:72:1059,72,0:0,0,19,4
chr1	226553486	.	C	A	1186.77	PASS	AC=2;AF=0.878;AN=2;DP=685;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:78:1149,78,0:0,0,19,4
chr1	226553490	.	C	A	1186.77	PASS	AC=2;AF=0.866;AN=2;DP=747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:81:1185,81,0:0,0,22,4
chr1	226553494	.	C	CA	599.34	PASS	AC=2;AF=0.778;AN=2;DP=410;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant-variant22	GT:AD:DP:GQ:PL:SB	1/1:2,24:26:21:621,21,0:2,0,20,4
chr1	226556094	.	T	C	722.95	PASS	AC=2;AF=0.977;AN=2;DP=1898;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1792,170,0:0,0,21,36
chr1	226557878	.	T	C	276.11	PASS	AC=1;AF=0.638;AN=2;DP=563;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:424,0,432:10,4,8,5
chr1	226564691	.	T	C	1841.85	PASS	AC=2;AF=0.789;AN=2;DP=1450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1082,99,0:0,0,23,10
chr1	226566726	.	A	C	1231.79	PASS	AC=2;AF=0.86;AN=2;DP=1895;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1911,165,0:0,0,38,17
chr1	226570840	.	T	C	2558.82	PASS	AC=2;AF=0.86;AN=2;DP=3494;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2943,290,0:0,0,46,51
chr1	226725814	.	G	A	1465.04	PASS	AC=2;AF=0.635;AN=2;DP=3381;set=variant2-variant3-variant5-variant7-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3883,378,0:0,0,69,58
chr1	226790001	.	C	T	807.42	PASS	AC=1;AF=0.533;AN=2;DP=1872;MQ=60;set=variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant19-variant21-variant23-variant27-variant29-variant31	GT:AD:DP:GQ:PL:SB	0/1:61,74:135:99:1767,0,1512:34,27,45,29
chr1	226790951	.	A	G	451.98	PASS	AC=1;AF=0.563;AN=2;DP=669;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:811,0,602:13,17,14,19
chr1	226791238	.	C	T	2181.71	PASS	AC=1;AF=0.684;AN=2;DP=2722;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,46:105:99:1080,0,1320:27,32,28,18
chr1	226792034	.	TTG	T	1625.35	PASS	AC=1;AF=0.563;AN=2;DP=1720;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,34:107:99:1051,0,2585:32,41,16,18
chr1	226792088	.	C	T	861.46	PASS	AC=1;AF=0.559;AN=2;DP=1189;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,32:83:99:646,0,1445:18,33,14,18
chr1	226793428	.	C	T	1038.98	PASS	AC=1;AF=0.559;AN=2;DP=1105;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,49:81:99:1240,0,818:18,14,28,21
chr1	226793899	.	T	TGAG	304.38	PASS	AC=1;AF=0.738;AN=2;DP=1454;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:932,0,1104:15,10,13,11
chr1	226795975	.	T	C	1067.85	PASS	AC=2;AF=0.694;AN=2;DP=3188;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4451,393,0:0,0,57,74
chr1	226796517	.	C	A	1433.95	PASS	AC=2;AF=0.646;AN=2;DP=3478;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:6325,457,0:0,0,68,82
chr1	226796537	.	T	C	2096.43	PASS	AC=2;AF=0.595;AN=2;DP=2777;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:5820,406,0:0,0,61,72
chr1	226796968	.	T	TCTGA	3264.45	PASS	AC=2;AF=0.646;AN=2;DP=4048;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:8327,559,0:0,0,49,137
chr1	226820500	.	G	A	1921.13	PASS	AC=2;AF=0.604;AN=2;DP=2811;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant28-variant29-variant34-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4382,406,0:0,0,61,75
chr1	226820937	.	C	T	568.89	PASS	AC=2;AF=0.542;AN=2;DP=636;MQ=60;set=variant2-variant5-variant8-variant10-variant15-variant21-variant22-variant27-variant28-variant29-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1822,179,0:0,0,29,31
chr1	226836590	.	A	G	507.08	PASS	AC=2;AF=0.597;AN=2;DP=1526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1614,158,0:0,0,20,33
chr1	226923146	.	GT	G	697.49	PASS	AC=1;AF=0.543;AN=2;DP=2111;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:2058,0,1864:36,24,34,31
chr1	226923264	.	G	A	1174.66	PASS	AC=1;AF=0.543;AN=2;DP=2706;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,59:140:99:1483,0,1907:39,42,26,33
chr1	226923505	.	G	T	1949.5	PASS	AC=2;AF=0.953;AN=2;DP=9704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,254:254:99:7833,760,0:0,0,125,129
chr1	226923938	.	A	C	1476.63	PASS	AC=2;AF=0.671;AN=2;DP=4847;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,134:135:99:4730,360,0:0,1,59,75
chr1	226924642	.	C	T	2351.15	PASS	AC=1;AF=0.525;AN=2;DP=5077;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant26-variant27-variant29-variant34-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,164:297:99:4030,0,3213:63,70,88,76
chr1	226924875	.	ACTGCCGCTG	A	1415.53	PASS	AC=1;AF=0.543;AN=2;DP=2063;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:1508,0,3983:16,27,18,21
chr1	226927063	.	GT	G	149.67	PASS	AC=2;AF=0.9;AN=2;DP=26;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant7-variant13-variant15-variant32-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:19:211,19,0:0,0,6,1
chr1	227058344	.	A	G	76.53	PASS	AC=1;AF=0.64;AN=2;DP=325;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant12-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:145,0,188:4,5,2,4
chr1	227058440	.	T	G	49.69	PASS	AC=1;AF=0.545;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant21-variant22-variant23-variant25-variant28-variant36-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:78,0,74:2,1,2,2
chr1	227069677	.	T	C	1993.2	PASS	AC=2;AF=0.791;AN=2;DP=10130;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8113,842,0:0,0,131,151
chr1	227069737	.	C	T	1328.46	PASS	AC=1;AF=0.671;AN=2;DP=5260;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,79:161:99:2065,0,2132:24,58,27,52
chr1	227071364	.	G	A	191.88	PASS	AC=1;AF=0.681;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:443,0,445:13,2,12,4
chr1	227071377	.	T	C	152.9	PASS	AC=2;AF=0.798;AN=2;DP=909;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1435,117,0:0,0,32,7
chr1	227071525	.	C	T	892.79	PASS	AC=1;AF=0.671;AN=2;DP=4050;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,84:161:99:2097,0,1850:34,43,44,40
chr1	227071676	.	T	G	49.16	PASS	AC=1;AF=0.5;AN=2;DP=49;MQ=60;set=variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:136,0,116:9,0,1,11
chr1	227073410	.	G	C	322.37	PASS	AC=2;AF=0.791;AN=2;DP=2952;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2367,225,0:0,0,27,48
chr1	227078955	.	T	C	412.55	PASS	AC=2;AF=0.791;AN=2;DP=2289;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2135,201,0:0,0,40,27
chr1	227079222	.	C	G	567.51	PASS	AC=1;AF=0.658;AN=2;DP=2025;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,46:77:99:1147,0,781:15,16,24,22
chr1	227081622	.	A	G	1462.18	PASS	AC=2;AF=0.791;AN=2;DP=4026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3403,336,0:0,0,72,40
chr1	227081850	.	G	A	1527.59	PASS	AC=1;AF=0.671;AN=2;DP=3183;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:894,0,1210:9,30,9,23
chr1	227083550	.	C	T	1008.94	PASS	AC=1;AF=0.658;AN=2;DP=3404;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,48:119:99:1072,0,1779:33,38,21,27
chr1	227085155	.	G	A	151.23	PASS	AC=1;AF=0.613;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:309,0,575:14,6,9,3
chr1	227085462	.	T	C	1346.16	PASS	AC=1;AF=0.5;AN=2;DP=2205;MQ=60;set=variant7-variant12-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant28-variant30-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,79:161:99:1855,0,1926:38,44,33,46
chr1	227085646	.	C	T	122.15	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant16-variant21-variant22-variant25-variant28-variant30-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:239,0,224:1,6,1,7
chr1	227086195	.	T	C	3256.17	PASS	AC=1;AF=0.5;AN=2;DP=2446;MQ=60;set=variant7-variant12-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant28-variant30-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,87:154:99:3415,0,3277:33,34,43,44
chr1	227086197	.	T	A	3256.17	PASS	AC=1;AF=0.5;AN=2;DP=2459;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant28-variant30-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,87:155:99:3415,0,3277:34,34,41,46
chr1	227086937	.	T	C	1891.99	PASS	AC=1;AF=0.658;AN=2;DP=3047;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1512,0,1289:5,34,8,36
chr1	227087243	.	G	T	135.18	PASS	AC=1;AF=0.5;AN=2;DP=252;MQ=60;set=variant7-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant28-variant30-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:228,0,156:3,5,2,6
chr1	227149203	.	G	A	1564.61	PASS	AC=1;AF=0.55;AN=2;DP=4290;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:151,109:260:99:2502,0,3663:74,77,57,52
chr1	227165097	.	G	A	446.48	PASS	AC=1;AF=0.522;AN=2;DP=1302;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant15-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:684,0,752:20,10,18,12
chr1	227165484	.	T	C	148.52	PASS	AC=2;AF=0.929;AN=2;DP=425;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:580,48,0:0,0,4,12
chr1	227170298	.	A	G	297.45	PASS	AC=1;AF=0.667;AN=2;DP=761;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:634,0,514:15,6,17,5
chr1	227171584	.	GT	G	230.19	PASS	AC=1;AF=0.629;AN=2;DP=738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:485,0,343:4,8,9,7
chr1	227171736	.	G	GT	1038.99	PASS	AC=1;AF=0.548;AN=2;DP=1321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:992,0,1007:29,2,27,6
chr1	227171738	.	G	T	1048.02	PASS	AC=1;AF=0.548;AN=2;DP=1372;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:44,34:78:99:1212,0,1648:33,11,27,7
chr1	227171739	.	G	T,C	755.46	PASS	AC=0,1;AF=0.267,0.283;AN=2;DP=1982;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:88:99:32,16,33,7
chr1	227171958	.	G	C	3037.2	PASS	AC=1;AF=0.577;AN=2;DP=3106;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant31-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,75:149:99:1888,0,2103:29,45,35,40
chr1	227172290	.	C	T	1821.35	PASS	AC=1;AF=0.613;AN=2;DP=7789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:147,115:262:99:2583,0,3625:76,71,58,57
chr1	227172518	.	C	T	665.63	PASS	AC=1;AF=0.545;AN=2;DP=1846;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant25-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:53,54:107:99:1363,0,1517:37,16,32,22
chr1	227172903	.	G	A	230.82	PASS	AC=1;AF=0.613;AN=2;DP=1070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:830,0,605:14,8,15,13
chr1	227172935	.	C	G	243.59	PASS	AC=1;AF=0.617;AN=2;DP=1482;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:625,0,678:16,11,14,11
chr1	227174122	.	C	G	208.66	PASS	AC=1;AF=0.545;AN=2;DP=1087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant25-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:877,0,777:21,7,21,9
chr1	227174145	.	T	C	334.27	PASS	AC=1;AF=0.641;AN=2;DP=2503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,44:82:99:1136,0,1003:28,10,25,19
chr1	227174210	.	T	C	537.19	PASS	AC=1;AF=0.625;AN=2;DP=5041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,79:165:99:1828,0,2086:50,36,39,40
chr1	227174823	.	A	AT	1126.74	PASS	AC=1;AF=0.625;AN=2;DP=2563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,61:99:99:1715,0,936:23,15,34,27
chr1	227174902	.	G	A	860.94	PASS	AC=1;AF=0.556;AN=2;DP=2719;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant10-variant14-variant15-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,49:115:99:1254,0,1727:31,35,28,21
chr1	227175245	.	C	CT	40.66	PASS	AC=1;AF=0.633;AN=2;DP=349;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:120,0,331:4,7,0,5
chr1	227175253	.	C	T	49.73	PASS	AC=2;AF=0.713;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:51:648,51,0:0,0,5,11
chr1	227177444	.	A	G	853.65	PASS	AC=1;AF=0.625;AN=2;DP=1766;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:774,0,522:15,3,20,8
chr1	227177731	.	A	T	1005.02	PASS	AC=1;AF=0.613;AN=2;DP=2574;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,30:85:99:843,0,1674:28,27,18,12
chr1	227177883	.	T	TACA	1084.25	PASS	AC=1;AF=0.613;AN=2;DP=3008;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:1637,0,2097:17,27,19,25
chr1	227178127	.	A	G	588.53	PASS	AC=1;AF=0.613;AN=2;DP=1463;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:569,0,807:13,17,9,13
chr1	227178700	.	A	G	1637.44	PASS	AC=1;AF=0.613;AN=2;DP=4964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,114:214:99:2826,0,2506:58,42,61,53
chr1	227178713	.	C	T	1822	PASS	AC=1;AF=0.613;AN=2;DP=5284;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,114:214:99:2875,0,2600:57,43,61,53
chr1	227178948	.	G	A	13596.2	PASS	AC=2;AF=0.821;AN=2;DP=13914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,395:396:99:14324,1153,0:1,0,166,229
chr1	227178962	.	T	C	3864.57	PASS	AC=1;AF=0.613;AN=2;DP=9352;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:190,161:351:99:3665,0,5127:65,125,69,92
chr1	227179037	.	G	T	2452.03	PASS	AC=1;AF=0.613;AN=2;DP=4122;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,69:140:99:2438,0,2564:19,52,23,46
chr1	227179054	.	G	A	2110.77	PASS	AC=1;AF=0.613;AN=2;DP=3277;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,53:104:99:2037,0,1955:13,38,17,36
chr1	227179358	.	T	C	1016.19	PASS	AC=2;AF=0.92;AN=2;DP=2310;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2351,239,0:0,0,33,47
chr1	227179501	.	AATAAGCACCT	A	201.19	PASS	AC=1;AF=0.597;AN=2;DP=1036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:804,0,584:5,7,9,11
chr1	227179707	.	GGGAGGGTGGGGAGAGTGA	G	97.73	PASS	AC=2;AF=0.98;AN=2;DP=129;FS=0;MQ=60;MQRankSum=0.851;ReadPosRankSum=0.47;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant30-variant31-variant33-variant35-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:226,15,0:0,0,5,0
chr1	227180858	.	T	C	824.4	PASS	AC=1;AF=0.545;AN=2;DP=1423;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant25-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:1103,0,1292:32,13,24,15
chr1	227180947	.	A	C	2189.22	PASS	AC=1;AF=0.625;AN=2;DP=5731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:119,112:231:99:2568,0,2893:69,50,60,52
chr1	227180981	.	T	C	2440.09	PASS	AC=1;AF=0.625;AN=2;DP=6663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:133,119:252:99:2694,0,3075:68,65,58,61
chr1	227181554	.	C	G	1773.99	PASS	AC=1;AF=0.613;AN=2;DP=2087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:1109,0,2151:22,14,20,9
chr1	227181555	.	A	G	1773.99	PASS	AC=1;AF=0.613;AN=2;DP=2097;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:1109,0,2151:21,13,20,9
chr1	227181838	.	T	G	1309.04	PASS	AC=1;AF=0.613;AN=2;DP=3120;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,52:95:99:1512,0,1253:12,31,16,36
chr1	227181923	.	C	T	679.4	PASS	AC=1;AF=0.613;AN=2;DP=1648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,22:62:99:586,0,1296:19,21,7,15
chr1	227182033	.	G	A	1924.07	PASS	AC=2;AF=0.943;AN=2;DP=4342;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3492,372,0:0,0,68,57
chr1	227182179	.	C	T	420.31	PASS	AC=1;AF=0.55;AN=2;DP=1030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:22,34:56:99:798,0,491:6,16,13,21
chr1	227182575	.	A	G	1839.74	PASS	AC=2;AF=0.884;AN=2;DP=3819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2571,266,0:0,0,52,37
chr1	227191656	.	A	C	49.73	PASS	AC=1;AF=0.692;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant11-variant13-variant15-variant16-variant18-variant19-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:55:247,0,55:2,0,5,2
chr1	227191755	.	ATT	AT,ATTT,ATTTT,A	342.89	PASS	AC=1,0,0,0;AF=0.488,0.15,0.025,0.025;AN=2;DP=1089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:30:96:5,6,12,7
chr1	227192028	.	T	C	411.05	PASS	AC=1;AF=0.548;AN=2;DP=833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,16:49:99:334,0,896:16,17,8,8
chr1	227192280	.	T	C	959	PASS	AC=1;AF=0.55;AN=2;DP=1584;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:55,38:93:99:851,0,1478:25,30,20,18
chr1	227192477	.	C	T	529.02	PASS	AC=1;AF=0.522;AN=2;DP=693;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant15-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,21:32:99:581,0,206:4,7,8,13
chr1	227192579	.	A	C	331.33	PASS	AC=1;AF=0.613;AN=2;DP=1413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:874,0,763:18,10,21,8
chr1	227198775	.	C	G	255.69	PASS	AC=1;AF=0.55;AN=2;DP=676;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:14,22:36:99:636,0,394:3,11,6,16
chr1	227210820	.	G	A	447.22	PASS	AC=1;AF=0.629;AN=2;DP=1214;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:604,0,280:8,3,14,6
chr1	227210888	.	A	T	858.65	PASS	AC=1;AF=0.629;AN=2;DP=2249;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,49:81:99:1101,0,815:23,9,25,24
chr1	227213968	.	G	T	591.93	PASS	AC=1;AF=0.645;AN=2;DP=1259;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,31:49:99:801,0,461:6,12,10,21
chr1	227216662	.	T	C	1154.56	PASS	AC=1;AF=0.661;AN=2;DP=2302;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,57:106:99:1625,0,1286:21,28,28,29
chr1	227216775	.	C	T	1471.12	PASS	AC=1;AF=0.605;AN=2;DP=2388;MQ=60;set=variant2-variant9-variant10-variant13-variant14-variant15-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant34-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,78:142:99:2075,0,1604:31,33,47,31
chr1	227218069	.	C	CAT	1349.92	PASS	AC=1;AF=0.837;AN=2;DP=1098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:486,0,678:11,5,9,3
chr1	227219314	.	A	G	143.54	PASS	AC=1;AF=0.646;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant31-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:309,0,183:0,5,1,8
chr1	227222515	.	G	GACAA	2846.16	PASS	AC=2;AF=1;AN=2;DP=2939;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3017,204,0:0,0,28,39
chr1	227235510	.	A	G	239.54	PASS	AC=1;AF=0.5;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant20-variant22-variant24-variant39	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:340,0,228:6,1,9,1
chr1	227239702	.	G	A	1145.35	PASS	AC=1;AF=0.5;AN=2;DP=294;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant24-variant39	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1174,0,870:12,23,12,29
chr1	227239746	.	G	T	1186.77	PASS	AC=1;AF=0.732;AN=2;DP=1440;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:769,0,490:4,14,7,20
chr1	227268488	.	T	G	549.84	PASS	AC=1;AF=0.591;AN=2;DP=911;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,40:60:99:1126,0,542:16,4,28,12
chr1	227288655	.	G	A	542.78	PASS	AC=1;AF=0.826;AN=2;DP=681;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:312,0,265:7,3,7,5
chr1	227299978	.	C	T	1398.76	PASS	AC=1;AF=0.591;AN=2;DP=1718;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,33:78:99:830,0,1183:31,14,22,11
chr1	227300277	.	G	A	61.77	PASS	AC=1;AF=0.833;AN=2;DP=105;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant31-variant33-variant34-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:63:76,0,63:1,1,2,1
chr1	227327502	.	G	A	229.59	PASS	AC=1;AF=0.5;AN=2;DP=172;MQ=60;set=variant2-variant15-variant20-variant22-variant24-variant39	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:356,0,458:7,11,1,10
chr1	227327527	.	T	C	247.57	PASS	AC=1;AF=0.5;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant20-variant22-variant24-variant39	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:171,0,276:2,7,0,5
chr1	227330759	.	A	G	1117.27	PASS	AC=1;AF=0.775;AN=2;DP=3910;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1248,0,1610:29,39,27,32
chr1	227330783	.	G	C	897.89	PASS	AC=1;AF=0.533;AN=2;DP=1164;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant19-variant25-variant29-variant33-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1095,0,1234:16,32,22,29
chr1	227381326	.	C	T	128.58	PASS	AC=1;AF=0.784;AN=2;DP=389;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:139,0,243:6,1,4,0
chr1	227381373	.	G	T	370.45	PASS	AC=1;AF=0.789;AN=2;DP=1053;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:367,0,610:14,5,9,4
chr1	227387143	.	A	G	172.47	PASS	AC=1;AF=0.848;AN=2;DP=252;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:198,0,156:4,0,5,0
chr1	227387361	.	A	G	1920.97	PASS	AC=1;AF=0.852;AN=2;DP=2200;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:702,0,688:9,19,11,18
chr1	227400792	.	A	T	334.68	PASS	AC=1;AF=0.618;AN=2;DP=192;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant29-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:114,0,145:4,1,3,2
chr1	227441605	.	A	G	214.68	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant20-variant22-variant24-variant39	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:349,0,267:7,2,8,2
chr1	227504794	.	T	C	1205.79	PASS	AC=1;AF=0.5;AN=2;DP=2133;MQ=60;set=variant2-variant10-variant11-variant14-variant15-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,96:188:99:2200,0,2154:49,43,48,48
chr1	227505212	.	TAAAA	TAAA,T,TAAAAA	91.3	PASS	AC=0,1,0;AF=0.128,0.205,0.244;AN=2;DP=3772;set=filterInvariant-variant2-filterInvariant4-filterInvariant5-variant6-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:120:99:45,22,34,19
chr1	227505643	.	G	A	1143.6	PASS	AC=1;AF=0.5;AN=2;DP=1124;MQ=60;set=variant2-variant10-variant14-variant15-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:999,0,1171:22,28,21,24
chr1	227505820	.	G	GC	1975.31	PASS	AC=2;AF=1;AN=2;DP=1773;FS=0;MQ=60;MQRankSum=0;ReadPosRankSum=-0.551;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1715,123,0:0,0,23,18
chr1	227505821	.	G	A	556.41	PASS	AC=1;AF=0.5;AN=2;DP=529;MQ=60;set=variant2-variant10-variant14-variant15-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:29,13:42:99:331,0,734:17,12,7,6
chr1	227505974	.	A	T	783.2	PASS	AC=1;AF=0.5;AN=2;DP=1935;MQ=60;set=variant2-variant10-variant11-variant14-variant15-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,55:133:99:1225,0,1679:39,39,30,25
chr1	227505994	.	C	CG	5465.2	PASS	AC=2;AF=1;AN=2;DP=5957;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:5587,403,0:0,0,65,64
chr1	227506004	.	A	G	669.03	PASS	AC=1;AF=0.5;AN=2;DP=1480;MQ=60;set=variant2-variant10-variant14-variant15-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:72,53:125:99:1132,0,1736:33,39,29,24
chr1	227506034	.	T	C	543.99	PASS	AC=1;AF=0.5;AN=2;DP=1615;MQ=60;set=variant2-variant10-variant11-variant14-variant15-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,42:112:99:925,0,1678:30,40,22,20
chr1	227919500	.	T	C	872.48	PASS	AC=1;AF=0.5;AN=2;DP=677;MQ=60;set=variant3-variant7-variant11-variant15-variant16-variant19-variant33-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:38,48:86:99:1345,0,992:12,26,15,33
chr1	227923081	.	G	A	8137.41	PASS	AC=2;AF=0.989;AN=2;DP=14002;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,404:404:99:11278,1197,0:0,0,177,227
chr1	228004966	.	C	A	2001.16	PASS	AC=1;AF=0.5;AN=2;DP=744;MQ=60;set=variant3-variant7-variant11-variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:95,78:173:99:1805,0,2328:47,48,44,34
chr1	228033197	.	A	G	1547.22	PASS	AC=2;AF=0.893;AN=2;DP=3285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2791,289,0:0,0,58,39
chr1	228106921	.	G	A	1580.66	PASS	AC=1;AF=0.545;AN=2;DP=1525;MQ=60;set=variant2-variant3-variant6-variant9-variant15-variant26-variant30-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,60:139:99:1442,0,2000:39,40,32,28
chr1	228107136	.	G	A	638.26	PASS	AC=1;AF=0.545;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant9-variant15-variant26-variant30-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:904,0,1524:19,20,16,21
chr1	228107139	.	A	G	593.85	PASS	AC=1;AF=0.646;AN=2;DP=2186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:1054,0,1378:15,20,20,20
chr1	228107281	.	G	A	396.48	PASS	AC=1;AF=0.646;AN=2;DP=1869;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,31:42:99:807,0,248:4,7,11,20
chr1	228107365	.	A	G	154.6	PASS	AC=2;AF=0.75;AN=2;DP=740;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:532,36,0:0,0,6,6
chr1	228107391	.	C	CAT	37.23	PASS	AC=1;AF=0.667;AN=2;DP=243;set=variant2-variant3-variant4-variant5-variant6-variant8-variant12-variant15-variant18-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:64:287,0,64:1,1,3,3
chr1	228107423	.	C	CAGAG,CACACACAGAG,CACAG,CACACAG	298.66	PASS	AC=0,1,0,0;AF=0.222,0.306,0.111,0.028;AN=2;DP=191;set=variant2-variant3-variant4-variant5-variant6-variant8-variant12-variant15-variant18-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	0/2:12:51:1,1,8,2
chr1	228107554	.	A	AACAC,AAC,AACACAC	316.52	PASS	AC=1,0,0;AF=0.547,0.016,0.016;AN=2;DP=1287;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:48:99:22,12,10,4
chr1	228107643	.	T	C	587.62	PASS	AC=2;AF=0.756;AN=2;DP=3148;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3083,297,0:0,0,51,48
chr1	228108584	.	G	T	1033.94	PASS	AC=1;AF=0.545;AN=2;DP=845;MQ=60;set=variant2-variant3-variant6-variant9-variant15-variant26-variant30-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1321,0,1454:30,18,32,17
chr1	228108703	.	C	T	2298.07	PASS	AC=1;AF=0.55;AN=2;DP=7319;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:129,140:269:99:3313,0,5036:76,53,78,62
chr1	228108709	.	G	T	2723.36	PASS	AC=1;AF=0.545;AN=2;DP=2814;MQ=60;set=variant2-variant3-variant6-variant9-variant15-variant26-variant30-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,138:281:99:3356,0,5442:79,64,79,59
chr1	228108932	.	A	G	1885.69	PASS	AC=1;AF=0.646;AN=2;DP=7559;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:124,106:230:99:2816,0,3321:58,66,53,53
chr1	228109137	.	A	G	3326.48	PASS	AC=1;AF=0.545;AN=2;DP=3212;set=variant2-variant3-variant6-variant9-variant15-variant26-variant30-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,178:336:99:4717,0,3926:90,68,95,83
chr1	228112121	.	A	G	816.05	PASS	AC=2;AF=0.65;AN=2;DP=3736;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3688,351,0:0,0,47,70
chr1	228112280	.	T	C	134.32	PASS	AC=2;AF=0.653;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:595,48,0:0,0,5,11
chr1	228112776	.	A	G	103.54	PASS	AC=2;AF=1;AN=2;DP=280;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:358,27,0:0,0,6,3
chr1	228113046	.	C	T	1589.96	PASS	AC=1;AF=0.5;AN=2;DP=1313;MQ=60;set=variant2-variant3-variant9-variant15-variant26-variant30-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,65:150:99:1347,0,2242:46,39,33,32
chr1	228113163	.	A	G	927.74	PASS	AC=2;AF=0.744;AN=2;DP=3869;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2885,273,0:0,0,38,53
chr1	228129197	.	T	C	718.53	PASS	AC=2;AF=0.663;AN=2;DP=3034;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2881,295,0:0,0,52,47
chr1	228155008	.	T	C	101.02	PASS	AC=2;AF=0.722;AN=2;DP=46;FractionInformativeReads=1;set=variant3-variant11-variant15-filterInvariant21-variant24-variant28-variant33-variant35-filterInvariant37	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:74,6,0:0,0,1,1
chr1	228155147	.	T	C	216.41	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;set=variant2-variant3-variant7-variant15-variant26-variant31-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:176,0,236:5,2,5,2
chr1	228155249	.	C	A	590.39	PASS	AC=1;AF=0.5;AN=2;DP=690;FractionInformativeReads=1;set=variant2-variant3-variant7-variant9-variant15-variant26-variant30-variant31-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:683,0,677:17,12,18,13
chr1	228155300	.	C	T	588.64	PASS	AC=1;AF=0.5;AN=2;DP=623;set=variant2-variant3-variant7-variant9-variant15-variant26-variant30-variant31-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:683,0,614:14,13,15,15
chr1	228155546	.	A	C	48.66	PASS	AC=1;AF=0.5;AN=2;DP=600;set=filterInvariant2-variant3-variant7-variant9-variant15-variant26-variant30-variant31-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,12:67:99:170,0,1461:33,22,7,5
chr1	228156074	.	C	T	213.53	PASS	AC=1;AF=0.5;AN=2;DP=538;FractionInformativeReads=1;set=variant2-variant3-variant7-variant9-variant15-variant26-variant30-variant31-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,22:58:99:552,0,957:11,25,5,17
chr1	228156143	.	G	C	247.99	PASS	AC=1;AF=0.593;AN=2;DP=514;set=variant-filterInvariant3-variant5-variant6-variant8-filterInvariant11-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-variant25-filterInvariant26-variant28-variant29-filterInvariant30-variant33-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:431,0,135:0,7,7,9
chr1	228158916	.	C	CG	304.52	PASS	AC=1;AF=0.5;AN=2;DP=221;set=variant2-variant3-variant7-variant9-variant15-variant26-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:467,0,943:9,9,4,9
chr1	228158920	.	C	T	313.55	PASS	AC=1;AF=0.5;AN=2;DP=221;FractionInformativeReads=1;set=variant2-variant3-variant7-variant9-variant15-variant26-variant31-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:445,0,946:9,9,3,8
chr1	228158950	.	T	C	132.23	PASS	AC=1;AF=0.5;AN=2;DP=166;set=variant2-variant3-variant7-variant9-variant15-variant26-variant31-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:241,0,432:8,7,2,7
chr1	228158984	.	C	A	63.99	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;set=variant3-variant7-variant15-variant31-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,3:19:69:69,0,531:9,7,0,3
chr1	228160230	.	A	T	121.08	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;set=variant2-variant3-variant9-variant15-variant26-variant30-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:136,0,300:6,6,3,4
chr1	228161511	.	G	A	562.8	PASS	AC=1;AF=0.5;AN=2;DP=623;set=variant2-variant3-variant7-variant9-variant15-variant26-variant30-variant31-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,41:74:99:1004,0,644:15,18,20,21
chr1	228161798	.	G	A	30.97	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;set=variant2-variant3-variant15-variant30-variant33-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:268,0,230:3,4,4,5
chr1	228194775	.	C	G	3646.11	PASS	AC=1;AF=0.5;AN=2;DP=3410;MQ=60;set=variant2-variant3-variant7-variant10-variant15-variant26-variant30-variant31-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:178,176:354:99:4088,0,4180:112,66,113,63
chr1	228238306	.	C	T	2107.54	PASS	AC=1;AF=0.5;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant6-variant15	GT:AD:DP:GQ:PL:SB	0/1:97,100:197:99:2420,0,2823:54,43,51,49
chr1	228247351	.	T	C	1129.74	PASS	AC=2;AF=0.795;AN=2;DP=5046;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5014,471,0:0,0,79,78
chr1	228248361	.	C	A	972.36	PASS	AC=1;AF=0.5;AN=2;DP=875;FractionInformativeReads=1;set=variant2-variant3-variant10-variant15-variant26-variant31-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1361,0,1261:28,22,33,24
chr1	228248508	.	A	G	821.16	PASS	AC=1;AF=0.545;AN=2;DP=1260;MQ=60;set=variant2-variant3-variant10-variant15-variant26-variant31-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,58:129:99:1564,0,1578:35,36,25,33
chr1	228270268	.	A	G	286.34	PASS	AC=2;AF=0.808;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:689,51,0:0,0,16,1
chr1	228270576	.	C	CGCGGCG	1666.84	PASS	AC=1;AF=0.5;AN=2;DP=307;MQ=60;set=variant3-variant15-variant26-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:945,0,1199:6,11,6,17
chr1	228271153	.	T	A	349.11	PASS	AC=1;AF=0.6;AN=2;DP=1172;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:664,0,799:8,19,6,17
chr1	228284991	.	C	T	3134.04	PASS	AC=1;AF=0.5;AN=2;DP=2113;MQ=60;set=variant3-variant10-variant15-variant26-variant31-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,100:229:99:2313,0,3532:65,64,50,50
chr1	228289976	.	A	G	1383.44	PASS	AC=1;AF=0.667;AN=2;DP=1005;MQ=60;set=variant3-variant10-variant15-variant16-variant26-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,50:114:99:1092,0,1519:31,33,27,23
chr1	228294300	.	T	C	1597.9	PASS	AC=1;AF=0.716;AN=2;DP=2450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,58:97:99:1583,0,1056:28,11,40,18
chr1	228296745	.	C	T	4733.88	PASS	AC=2;AF=0.821;AN=2;DP=5440;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,161:163:99:5134,439,0:1,1,69,92
chr1	228327999	.	C	T	3522.17	PASS	AC=1;AF=0.5;AN=2;DP=1275;MQ=60;set=variant3-variant10-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,139:257:99:3233,0,2835:51,67,59,80
chr1	228328743	.	T	C	334.22	PASS	AC=2;AF=0.989;AN=2;DP=609;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;ReadPosRankSum=0.296;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:856,72,0:0,0,18,6
chr1	228328972	.	G	A	582.4	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.116;FractionInformativeReads=1;MQ=60;MQRankSum=0.406;QD=11.65;ReadPosRankSum=1.297;SOR=0.965;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:611,0,803:14,16,8,12
chr1	228333652	.	G	A	3019.42	PASS	AC=1;AF=0.5;AN=2;DP=1343;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,109:224:99:2581,0,2705:61,54,69,40
chr1	228335959	.	C	T	494.73	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:1147,0,851:22,8,28,9
chr1	228346425	.	G	C	688.53	PASS	AC=1;AF=0.5;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:92:326,0,92:3,0,7,5
chr1	228347352	.	A	G	3410.08	PASS	AC=1;AF=0.909;AN=2;DP=5711;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,86:166:99:2114,0,1750:38,42,38,48
chr1	228352160	.	T	C	2384.36	PASS	AC=2;AF=0.989;AN=2;DP=4693;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4275,420,0:0,0,66,74
chr1	228353651	.	G	C	2279.35	PASS	AC=1;AF=0.603;AN=2;DP=4068;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,91:182:99:2284,0,2573:58,33,54,37
chr1	228364558	.	A	T	1428.21	PASS	AC=1;AF=0.5;AN=2;DP=585;MQ=60;set=variant3-variant10-variant15-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,45:97:99:1046,0,1195:25,27,21,24
chr1	228364605	.	T	C	852.98	PASS	AC=1;AF=0.611;AN=2;DP=1698;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1177,0,1038:19,22,19,25
chr1	228365184	.	CTTT	CT,C,CTT,CTTTTTTTTT	95.03	PASS	AC=1,0,0,0;AF=0.458,0.083,0.208,0.042;AN=2;DP=169;set=variant2-variant6-variant9-variant15-variant16-variant29-variant34-variant36-variant38-variant39-filterInvariant41-variant43	GT:DP:GQ:SB	0/1:6:14:0,1,1,4
chr1	228366187	.	T	C	94.63	PASS	AC=1;AF=0.6;AN=2;DP=29;FractionInformativeReads=1;set=variant3-variant10-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:71:71,0,126:3,1,2,1
chr1	228366286	.	CAAA	C	205.68	PASS	AC=1;AF=0.66;AN=2;DP=220;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant10-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:129,0,388:5,2,2,2
chr1	228366526	.	A	G	1361.23	PASS	AC=2;AF=0.989;AN=2;DP=2632;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2206,232,0:0,0,40,38
chr1	228366813	.	C	T	647.38	PASS	AC=2;AF=0.989;AN=2;DP=1831;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1912,169,0:0,0,29,28
chr1	228367200	.	C	T	3196.43	PASS	AC=1;AF=0.5;AN=2;DP=1115;MQ=60;set=variant3-variant10-variant15-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,99:222:99:2431,0,2810:56,67,47,52
chr1	228368230	.	G	A	3034.4	PASS	AC=2;AF=0.989;AN=2;DP=4082;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,105:106:99:3200,308,0:1,0,57,48
chr1	228369612	.	G	A	740.21	PASS	AC=1;AF=0.5;AN=2;DP=385;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant34-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,43:61:99:1188,0,468:11,7,23,20
chr1	228369893	.	CTTCA	C	1594.14	PASS	AC=1;AF=0.603;AN=2;DP=3285;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,62:120:99:2355,0,3127:23,35,26,36
chr1	228391382	.	T	TA	3438.33	PASS	AC=1;AF=0.5;AN=2;DP=11456;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:159,116:275:99:1795,0,2740:76,83,52,64
chr1	228391591	.	G	C	2767.82	PASS	AC=1;AF=0.607;AN=2;DP=6580;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,146:287:99:3825,0,3562:63,78,70,76
chr1	228399482	.	C	G	3690.38	PASS	AC=1;AF=0.743;AN=2;DP=4660;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,51:124:99:1110,0,1921:42,31,29,22
chr1	228399766	.	T	C	5142.97	PASS	AC=1;AF=0.743;AN=2;DP=6911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,126:257:99:2857,0,2862:66,65,62,64
chr1	228399799	.	C	T	2763.51	PASS	AC=1;AF=0.5;AN=2;DP=783;set=variant3-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,107:219:99:2592,0,2524:57,55,50,57
chr1	228400646	.	T	C	2695.8	PASS	AC=1;AF=0.743;AN=2;DP=2756;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,43:95:99:1632,0,2403:15,37,8,35
chr1	228400653	.	A	T	2592.79	PASS	AC=1;AF=0.743;AN=2;DP=2390;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:1556,0,2248:12,31,9,29
chr1	228402047	.	A	G	13248.9	PASS	AC=1;AF=0.743;AN=2;DP=18450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:374,287:661:99:6661,0,9152:177,197,128,159
chr1	228402121	.	A	G	9366.56	PASS	AC=1;AF=0.743;AN=2;DP=11755;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:248,172:420:99:4304,0,6584:98,150,61,111
chr1	228402508	.	C	T	842.97	PASS	AC=1;AF=0.648;AN=2;DP=1292;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:545,0,844:21,8,16,5
chr1	228402882	.	A	C	268.61	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.493;QD=11.19;ReadPosRankSum=-0.498;SOR=0.892;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:297,0,375:5,9,3,7
chr1	228404198	.	G	A	2343.27	PASS	AC=1;AF=0.5;AN=2;DP=924;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,114:219:99:2793,0,2779:60,45,67,47
chr1	228404668	.	T	C	1223.37	PASS	AC=1;AF=0.648;AN=2;DP=2060;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,55:88:99:1721,0,1059:26,7,42,13
chr1	228405118	.	G	GA	328.21	PASS	AC=2;AF=1;AN=2;DP=1121;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:66:617,66,0:0,0,3,18
chr1	228407010	.	C	T	5384.88	PASS	AC=1;AF=0.66;AN=2;DP=8741;MQ=60;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,213:403:99:5191,0,4925:112,78,131,82
chr1	228407260	.	G	A	5531.69	PASS	AC=1;AF=0.66;AN=2;DP=9643;MQ=60;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,212:391:99:8193,0,8691:66,113,76,136
chr1	228407265	.	G	A	8060.47	PASS	AC=1;AF=0.5;AN=2;DP=750;FractionInformativeReads=1;MQ=60;set=variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:173,209:382:99:8089,0,8688:64,109,76,133
chr1	228412106	.	T	C	1648.8	PASS	AC=1;AF=0.667;AN=2;DP=2817;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,43:103:99:1226,0,1749:41,19,30,13
chr1	228412227	.	T	C	6630.66	PASS	AC=1;AF=0.667;AN=2;DP=8907;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:203,181:384:99:6974,0,8749:122,81,109,72
chr1	228412228	.	G	A	6622.87	PASS	AC=1;AF=0.66;AN=2;DP=8380;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:210,182:392:99:6974,0,8749:124,86,108,74
chr1	228412308	.	G	A	5308.01	PASS	AC=1;AF=0.667;AN=2;DP=12266;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:298,278:576:99:7031,0,7603:157,141,157,121
chr1	228430697	.	A	G	192.83	PASS	AC=1;AF=0.711;AN=2;DP=871;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:342,0,304:8,1,9,1
chr1	228431095	.	A	G	2354.3	PASS	AC=1;AF=0.711;AN=2;DP=12543;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,196:389:99:4666,0,4769:78,115,81,115
chr1	228431235	.	G	A	510.42	PASS	AC=1;AF=0.646;AN=2;DP=959;MQ=60;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:593,0,639:4,16,5,16
chr1	228431930	.	C	T	2946.94	PASS	AC=1;AF=0.711;AN=2;DP=11792;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:200,192:392:99:4508,0,4929:115,85,109,83
chr1	228432987	.	G	C	1240.89	PASS	AC=1;AF=0.66;AN=2;DP=2107;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,51:100:99:1514,0,1396:37,12,39,12
chr1	228433217	.	A	G	1506.39	PASS	AC=1;AF=0.711;AN=2;DP=15378;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:236,238:474:99:6154,0,6265:121,115,127,111
chr1	228434395	.	T	C	3172.2	PASS	AC=1;AF=0.711;AN=2;DP=22222;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:330,365:695:99:9125,0,7750:151,179,170,195
chr1	228434467	.	T	C	3110.34	PASS	AC=1;AF=0.711;AN=2;DP=17037;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:212,282:494:99:7125,0,5173:76,136,114,168
chr1	228437603	.	T	C	3296.13	PASS	AC=1;AF=0.711;AN=2;DP=13930;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:221,211:432:99:5137,0,5608:138,83,131,80
chr1	228444318	.	T	G	2088.53	PASS	AC=1;AF=0.711;AN=2;DP=11300;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,220:383:99:5561,0,3824:93,70,128,92
chr1	228444565	.	T	A	11741.1	PASS	AC=2;AF=1;AN=2;DP=26581;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,732:732:99:21674,2181,0:0,0,329,403
chr1	228444741	.	C	T	590.94	PASS	AC=1;AF=0.711;AN=2;DP=2233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,25:65:99:785,0,1270:7,33,3,22
chr1	228447513	.	T	G	4484.61	PASS	AC=1;AF=0.66;AN=2;DP=6111;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,149:291:99:5692,0,8584:37,105,43,106
chr1	228447519	.	T	A	4377.3	PASS	AC=1;AF=0.66;AN=2;DP=5558;FractionInformativeReads=1;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,139:272:99:5418,0,8418:36,97,41,98
chr1	228456147	.	T	C	1568.97	PASS	AC=1;AF=0.725;AN=2;DP=7980;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,119:249:99:3094,0,3232:73,57,65,54
chr1	228461129	.	A	G	3233.38	PASS	AC=1;AF=0.72;AN=2;DP=22602;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:360,324:684:99:7792,0,8824:180,180,171,153
chr1	228461187	.	T	C	5612.77	PASS	AC=1;AF=0.5;AN=2;DP=1656;MQ=60;set=variant5-variant6-variant15	GT:AD:DP:GQ:PL:SB	0/1:305,328:633:99:8237,0,7253:135,170,138,190
chr1	228461408	.	A	AG	1405.81	PASS	AC=2;AF=1;AN=2;DP=2780;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2473,223,0:0,0,34,40
chr1	228461757	.	G	A	3165.52	PASS	AC=1;AF=0.579;AN=2;DP=3752;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant36-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,109:212:99:2742,0,2717:53,50,54,55
chr1	228464062	.	G	A	359.63	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:30,15:45:99:388,0,819:21,9,11,4
chr1	228464100	.	G	A	458.97	PASS	AC=1;AF=0.579;AN=2;DP=809;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant36-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:519,0,1169:28,9,16,7
chr1	228464248	.	T	G	3602.24	PASS	AC=1;AF=0.72;AN=2;DP=10025;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,159:324:99:3625,0,3965:88,77,89,70
chr1	228464276	.	T	C	3972.54	PASS	AC=1;AF=0.72;AN=2;DP=11227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,179:343:99:4178,0,3898:79,85,95,84
chr1	228464842	.	C	G	2767.85	PASS	AC=1;AF=0.72;AN=2;DP=8607;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,109:219:99:2907,0,2890:52,58,55,54
chr1	228465346	.	A	G	9678.01	PASS	AC=1;AF=0.661;AN=2;DP=5477;MQ=60;set=variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,119:244:99:4343,0,5580:58,67,53,66
chr1	228465370	.	T	G	1557.9	PASS	AC=1;AF=0.72;AN=2;DP=7064;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,104:214:99:3996,0,5340:54,56,45,59
chr1	228465674	.	C	CAAG	73.17	PASS	AC=1;AF=0.684;AN=2;DP=567;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:237,0,234:1,4,2,4
chr1	228466750	.	T	C	1733.35	PASS	AC=1;AF=0.64;AN=2;DP=878;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,19:26:99:656,0,231:3,4,7,12
chr1	228466862	.	C	T	1936.33	PASS	AC=1;AF=0.5;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:1032,0,1505:37,19,27,11
chr1	228467333	.	C	G	595.89	PASS	AC=1;AF=0.5;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:357,0,542:7,8,7,6
chr1	228471379	.	G	C	6605.71	PASS	AC=1;AF=0.635;AN=2;DP=4783;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,84:210:99:1957,0,3152:61,65,39,45
chr1	228472669	.	C	A	2640.34	PASS	AC=1;AF=0.5;AN=2;DP=770;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant15	GT:AD:DP:GQ:PL:SB	0/1:158,96:254:99:2245,0,3739:74,84,43,53
chr1	228474817	.	G	A	480.44	PASS	AC=1;AF=0.583;AN=2;DP=607;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:373,0,420:6,8,3,8
chr1	228474840	.	G	C	393.1	PASS	AC=1;AF=0.583;AN=2;DP=498;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:341,0,310:6,6,3,8
chr1	228480282	.	A	G	1956.99	PASS	AC=1;AF=0.707;AN=2;DP=8741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,161:278:99:4192,0,3048:66,51,86,75
chr1	228480964	.	A	G	5231.05	PASS	AC=1;AF=0.633;AN=2;DP=4339;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,84:153:99:2484,0,1897:48,21,56,28
chr1	228481917	.	G	A	3917.58	PASS	AC=1;AF=0.5;AN=2;DP=1092;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant15	GT:AD:DP:GQ:PL:SB	0/1:227,200:427:99:5284,0,5902:137,90,118,82
chr1	228482028	.	G	C	5661.28	PASS	AC=1;AF=0.583;AN=2;DP=7510;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:296,268:564:99:6676,0,7281:144,152,133,135
chr1	228482285	.	T	C	1611.76	PASS	AC=1;AF=0.707;AN=2;DP=3156;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1529,0,1244:18,22,17,33
chr1	228486404	.	C	T	2592.72	PASS	AC=1;AF=0.583;AN=2;DP=3916;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,133:294:99:3129,0,3806:75,86,63,70
chr1	228491633	.	G	A	3107.46	PASS	AC=1;AF=0.5;AN=2;DP=1541;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant18-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,137:279:99:3205,0,3779:53,89,58,79
chr1	228494357	.	C	T	3315.51	PASS	AC=1;AF=0.583;AN=2;DP=2726;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,94:192:99:3336,0,3886:37,61,34,60
chr1	228494382	.	T	G,C	913.18	PASS	AC=0,1;AF=0.39,0.317;AN=2;DP=4578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:148:99:28,45,28,47
chr1	228494438	.	C	T	1608.93	PASS	AC=1;AF=0.583;AN=2;DP=1371;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,40:95:99:1092,0,1629:22,33,16,24
chr1	228494696	.	G	A	2238.09	PASS	AC=1;AF=0.565;AN=2;DP=3417;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,84:185:99:2081,0,2563:48,53,43,41
chr1	228495696	.	T	C	88.74	PASS	AC=1;AF=0.707;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:544,0,366:12,3,13,5
chr1	228496014	.	G	A	2340.1	PASS	AC=1;AF=0.583;AN=2;DP=2642;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,117:216:99:2846,0,2488:39,60,51,66
chr1	228497053	.	A	G	813.29	PASS	AC=1;AF=0.707;AN=2;DP=3864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,58:113:99:1560,0,1496:25,30,30,28
chr1	228503677	.	A	G	2547.96	PASS	AC=1;AF=0.707;AN=2;DP=11128;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,160:309:99:4027,0,3698:92,57,93,67
chr1	228504472	.	T	C	1382.52	PASS	AC=1;AF=0.707;AN=2;DP=5676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,69:175:99:1761,0,2706:55,51,38,31
chr1	228504591	.	C	A	1884.27	PASS	AC=1;AF=0.588;AN=2;DP=1920;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,60:142:99:1186,0,1968:35,47,27,33
chr1	228504669	.	G	A	1257.36	PASS	AC=1;AF=0.588;AN=2;DP=808;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:743,0,1114:11,27,12,20
chr1	228504701	.	G	GCTCC	439.95	PASS	AC=1;AF=0.713;AN=2;DP=1100;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:763,0,1196:5,19,6,14
chr1	228505204	.	G	A	3220.02	PASS	AC=1;AF=0.565;AN=2;DP=4295;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,113:218:99:2727,0,2560:53,52,65,48
chr1	228505668	.	C	G	2999.4	PASS	AC=1;AF=0.707;AN=2;DP=10705;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,155:321:99:3984,0,4087:98,68,92,63
chr1	228505699	.	T	C	3038.83	PASS	AC=1;AF=0.707;AN=2;DP=12207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:180,165:345:99:4280,0,4376:102,78,94,71
chr1	228505739	.	G	A	3619.41	PASS	AC=1;AF=0.583;AN=2;DP=5660;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,178:344:99:4312,0,3831:83,83,88,90
chr1	228509427	.	A	G	2140.92	PASS	AC=1;AF=0.707;AN=2;DP=11236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,181:342:99:4595,0,3930:77,84,81,100
chr1	228522483	.	C	T	853.84	PASS	AC=1;AF=0.5;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant18-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:609,0,795:20,11,17,7
chr1	228523447	.	T	C	730.13	PASS	AC=2;AF=0.83;AN=2;DP=3406;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2485,237,0:0,0,53,26
chr1	228524553	.	A	G	450.2	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.613;QD=19.57;ReadPosRankSum=0.42;SOR=0.722;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:478,0,179:6,2,11,4
chr1	228524642	.	T	C	923.44	PASS	AC=1;AF=0.5;AN=2;DP=325;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant18-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:726,0,562:16,10,17,14
chr1	228526011	.	C	T	1466.04	PASS	AC=1;AF=0.6;AN=2;DP=1567;MQ=60;set=variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant28-variant29-variant30-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:60,50:110:99:1323,0,1507:30,30,25,25
chr1	228526742	.	CCACA	CCACACA,CCACACACACA,CCACACACA,CCA,C,CCACACACACACA	57.98	PASS	AC=0,0,1,0,0,0;AF=0.171,0.186,0.2,0.1,0.043,0.014;AN=2;DP=627;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:11:99:0,6,2,3
chr1	228527844	.	T	G	407.21	PASS	AC=1;AF=0.5;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant18-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:612,0,591:8,13,9,16
chr1	228539300	.	G	A	134.62	PASS	AC=2;AF=0.72;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1282,105,0:0,0,14,21
chr1	228539332	.	A	G	634.12	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:353,0,268:3,7,3,9
chr1	228547901	.	C	T	2618.09	PASS	AC=1;AF=0.556;AN=2;DP=4886;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,85:208:99:2210,0,3533:64,59,37,48
chr1	228550429	.	C	T	1639.61	PASS	AC=1;AF=0.5;AN=2;DP=584;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant18-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1455,0,1379:15,34,20,35
chr1	228556788	.	C	T	421.27	PASS	AC=1;AF=0.583;AN=2;DP=1615;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:786,0,612:14,10,18,15
chr1	228559994	.	C	T	3026.26	PASS	AC=1;AF=0.645;AN=2;DP=11916;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:205,195:400:99:4595,0,5059:100,105,92,103
chr1	228560139	.	A	G	3565.31	PASS	AC=2;AF=0.943;AN=2;DP=5330;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,153:155:99:5231,378,0:2,0,59,94
chr1	228560700	.	T	C	1357.63	PASS	AC=1;AF=0.707;AN=2;DP=5200;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,95:185:99:2147,0,2221:48,42,47,48
chr1	228603029	.	C	A	713.92	PASS	AC=1;AF=0.537;AN=2;DP=2803;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant23-variant25-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,76:125:99:1638,0,1242:21,28,36,40
chr1	228612444	.	A	G	896.49	PASS	AC=2;AF=0.886;AN=2;DP=1483;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1243,105,0:0,0,28,7
chr1	228612838	.	G	T	2635.69	PASS	AC=2;AF=0.849;AN=2;DP=8146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:8163,740,0:0,0,129,118
chr1	228613052	.	T	C	2394.73	PASS	AC=2;AF=0.886;AN=2;DP=5635;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,183:184:99:5661,541,0:0,1,73,110
chr1	228645063	.	A	G	4309.36	PASS	AC=2;AF=0.841;AN=2;DP=5718;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4735,472,0:0,0,99,59
chr1	228681749	.	C	T	3828.71	PASS	AC=1;AF=0.65;AN=2;DP=4033;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,76:142:99:2014,0,1728:31,35,40,36
chr1	228681913	.	CT	C	1684.64	PASS	AC=1;AF=0.568;AN=2;DP=2446;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,67:134:99:2291,0,2250:31,36,33,34
chr1	228682330	.	C	G	2867.51	PASS	AC=2;AF=0.852;AN=2;DP=3833;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2668,273,0:0,0,45,46
chr1	228683139	.	A	G	1452.9	PASS	AC=1;AF=0.55;AN=2;DP=818;MQ=60;set=variant5-variant6-variant8-variant11-variant13-variant15-variant20-variant28-variant29-variant32	GT:AD:DP:GQ:PL:SB	0/1:26,45:71:99:1283,0,740:16,10,30,15
chr1	228699477	.	T	C	2201.92	PASS	AC=1;AF=0.691;AN=2;DP=7645;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,150:275:99:3772,0,2980:68,57,82,68
chr1	228785805	.	C	T	877.56	PASS	AC=1;AF=0.526;AN=2;DP=811;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant18-variant19-variant20-variant23-variant28-variant29-variant30-variant32-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:785,0,1087:27,6,22,5
chr1	229178058	.	C	T	104.64	PASS	AC=1;AF=0.652;AN=2;DP=365;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,14:18:99:451,0,120:4,0,10,4
chr1	229385256	.	G	A	277.83	PASS	AC=1;AF=0.655;AN=2;DP=547;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:491,0,393:9,2,13,1
chr1	229385669	.	TTC	T	580.71	PASS	AC=1;AF=0.55;AN=2;DP=269;MQ=60;set=variant3-variant4-variant15-variant19-variant24-variant25-variant30-variant34-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:401,0,439:4,8,2,9
chr1	229385897	.	C	CGTGTGT,CGT,CGTGTGTGTGT,CGTGT,CGTGTGTGT	79.67	PASS	AC=0,0,0,2,0;AF=0.212,0.154,0.308,0.038,0.038;AN=2;DP=250;MQ=60;set=variant2-variant4-variant5-variant12-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:5:15:0,0,1,4
chr1	229386237	.	T	A	814.21	PASS	AC=1;AF=0.65;AN=2;DP=1185;MQ=60;set=variant-variant5-variant7-variant11-variant12-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant29-variant33-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:920,0,866:19,12,20,15
chr1	229407233	.	G	C	318.41	PASS	AC=1;AF=0.655;AN=2;DP=550;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:307,0,298:3,7,4,7
chr1	229422088	.	A	G	141.08	PASS	AC=1;AF=0.5;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant22-variant24-variant26-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:263,0,360:9,2,8,1
chr1	229422193	.	T	C	2240.65	PASS	AC=2;AF=0.773;AN=2;DP=1752;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1958,194,0:0,0,37,28
chr1	229438828	.	G	A	507.1	PASS	AC=2;AF=0.79;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:446,42,0:0,0,4,10
chr1	229439581	.	A	T	3558.86	PASS	AC=1;AF=0.5;AN=2;DP=3847;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant22-variant24-variant26-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:232,189:421:99:4411,0,5511:134,98,115,74
chr1	229439639	.	T	A	5064.62	PASS	AC=1;AF=0.672;AN=2;DP=12199;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:267,283:550:99:6623,0,6331:145,122,145,138
chr1	229440190	.	C	T	2279.87	PASS	AC=1;AF=0.672;AN=2;DP=4155;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,78:166:99:2075,0,2305:37,51,29,49
chr1	229457208	.	C	A	9313.95	PASS	AC=2;AF=1;AN=2;DP=11875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,351:351:99:10687,1052,0:0,0,171,180
chr1	229458456	.	G	A	2003.08	PASS	AC=1;AF=0.5;AN=2;DP=1815;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant22-variant24-variant26-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,105:195:99:2546,0,2293:37,53,40,65
chr1	229458632	.	T	C	2361.46	PASS	AC=1;AF=0.5;AN=2;DP=1845;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant22-variant24-variant26-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,93:167:99:2402,0,1960:47,27,60,33
chr1	229460176	.	TA	TAA,T	207.39	PASS	AC=1,0;AF=0.517,0.017;AN=2;DP=1320;set=variant2-variant5-variant7-variant10-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:43:99:19,11,8,5
chr1	229460246	.	A	T	1672.86	PASS	AC=1;AF=0.672;AN=2;DP=3312;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,75:145:99:1991,0,1941:45,25,51,24
chr1	229460323	.	G	C	2081.72	PASS	AC=1;AF=0.5;AN=2;DP=2503;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant22-variant24-variant26-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,113:274:99:2689,0,3896:91,70,65,48
chr1	229460356	.	C	T	2518.4	PASS	AC=1;AF=0.5;AN=2;DP=2702;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant22-variant24-variant26-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,113:279:99:2707,0,4288:90,76,60,53
chr1	229461024	.	C	T	2336.31	PASS	AC=1;AF=0.672;AN=2;DP=5474;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,99:223:99:2450,0,3352:52,72,42,57
chr1	229461315	.	A	G	84.22	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant15-variant22-variant24-variant26-variant27-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:356,0,168:1,4,2,9
chr1	229477767	.	A	G	1702.36	PASS	AC=1;AF=0.528;AN=2;DP=2355;MQ=60;set=variant-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant23-variant26-variant29-variant30-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,102:163:99:2335,0,1374:37,24,51,51
chr1	229567660	.	C	CG	2867.34	PASS	AC=1;AF=0.583;AN=2;DP=1808;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant21-variant25-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,68:166:99:2573,0,5143:38,60,30,38
chr1	229567663	.	C	G	2873.37	PASS	AC=1;AF=0.607;AN=2;DP=1985;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,68:168:99:2573,0,5143:39,61,29,39
chr1	229567683	.	TC	T	2390.91	PASS	AC=1;AF=0.577;AN=2;DP=1442;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,58:134:99:2324,0,4285:28,48,20,38
chr1	229568231	.	T	G	685.47	PASS	AC=2;AF=1;AN=2;DP=1233;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1254,107,0:0,0,7,29
chr1	229568632	.	A	G	5978.62	PASS	AC=1;AF=0.6;AN=2;DP=5026;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:192,181:373:99:6895,0,9769:97,95,85,96
chr1	229568637	.	C	G	6090.07	PASS	AC=1;AF=0.577;AN=2;DP=4274;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,173:358:99:6750,0,9704:93,92,83,90
chr1	229568934	.	AG	A	1118.11	PASS	AC=1;AF=0.6;AN=2;DP=1421;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,44:94:99:1062,0,1237:18,32,15,29
chr1	229569592	.	C	T	513.47	PASS	AC=1;AF=0.6;AN=2;DP=344;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:228,0,305:8,1,6,2
chr1	229569803	.	A	G	1171.48	PASS	AC=1;AF=0.694;AN=2;DP=3059;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,52:98:99:1999,0,2012:17,29,21,31
chr1	229569804	.	G	A	1171.48	PASS	AC=1;AF=0.694;AN=2;DP=3023;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,52:98:99:1999,0,2012:17,29,21,31
chr1	229576965	.	C	T	1645.82	PASS	AC=1;AF=0.6;AN=2;DP=2018;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,67:192:99:1587,0,3259:72,53,43,24
chr1	229580593	.	C	CA	220.04	PASS	AC=1;AF=0.577;AN=2;DP=290;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:103,0,384:11,5,6,0
chr1	229596260	.	A	G	152.47	PASS	AC=1;AF=0.65;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant15-variant17-variant18-variant21-variant25-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,11:12:10:371,0,10:0,1,9,2
chr1	229599225	.	T	C	271.12	PASS	AC=1;AF=0.577;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:448,0,507:13,3,12,5
chr1	229600336	.	A	C	306.61	PASS	AC=1;AF=0.577;AN=2;DP=291;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:280,0,582:14,2,8,0
chr1	229602284	.	C	A	694.44	PASS	AC=1;AF=0.6;AN=2;DP=411;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:456,0,777:20,2,12,4
chr1	229622162	.	A	G	585.18	PASS	AC=1;AF=0.579;AN=2;DP=1131;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,26:73:99:589,0,1090:26,21,14,12
chr1	229623131	.	G	C	559.49	PASS	AC=1;AF=0.588;AN=2;DP=503;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,28:42:99:1134,0,883:11,3,19,9
chr1	229623137	.	T	C	592.87	PASS	AC=1;AF=0.579;AN=2;DP=605;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,29:43:99:1172,0,878:10,4,20,9
chr1	229623338	.	T	C	907.45	PASS	AC=1;AF=0.579;AN=2;DP=935;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:988,0,860:9,22,13,26
chr1	229623409	.	A	ATTTG	384.44	PASS	AC=1;AF=0.618;AN=2;DP=252;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:369,0,434:2,7,2,8
chr1	229631193	.	T	C	378.77	PASS	AC=1;AF=0.583;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:366,0,990:26,2,11,3
chr1	229631734	.	T	C	1375.06	PASS	AC=1;AF=0.583;AN=2;DP=2111;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,78:147:99:1910,0,1783:27,42,35,43
chr1	229635521	.	A	G	1058.34	PASS	AC=1;AF=0.588;AN=2;DP=1512;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,53:125:99:1164,0,1865:31,41,25,28
chr1	229636388	.	A	G	139.31	PASS	AC=1;AF=0.579;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:110,0,110:3,0,3,0
chr1	229637645	.	C	A	386.72	PASS	AC=1;AF=0.583;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:321,0,432:11,3,9,3
chr1	229637881	.	T	G	1584.91	PASS	AC=1;AF=0.588;AN=2;DP=1295;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:1022,0,1124:14,27,9,28
chr1	229644157	.	G	T	2140.46	PASS	AC=1;AF=0.583;AN=2;DP=2507;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,69:169:99:1596,0,2656:43,57,25,44
chr1	229663064	.	GAGGAA	G	4062.01	PASS	AC=2;AF=1;AN=2;DP=3625;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:4572,310,0:0,0,54,49
chr1	229675042	.	A	G	554.78	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant-variant15	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:697,0,762:22,1,19,4
chr1	229683264	.	G	A	587.09	PASS	AC=1;AF=0.6;AN=2;DP=682;FractionInformativeReads=1;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant31-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:823,0,409:10,8,20,10
chr1	229693846	.	A	C	169.32	PASS	AC=1;AF=0.632;AN=2;DP=226;MQ=60;set=variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant31-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:94:94,0,201:5,4,3,2
chr1	229694557	.	T	TGCGCCC	247.54	PASS	AC=1;AF=0.6;AN=2;DP=379;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant31-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:585,0,1122:4,11,3,12
chr1	229730452	.	G	A	4087.09	PASS	AC=1;AF=0.625;AN=2;DP=3582;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant27-variant29-variant34-variant35-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,94:174:99:2313,0,1885:40,40,55,39
chr1	229735022	.	G	GT	2832.15	PASS	AC=1;AF=0.636;AN=2;DP=5618;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,74:149:99:1476,0,1592:28,47,21,53
chr1	229737227	.	G	A	7026.46	PASS	AC=1;AF=0.625;AN=2;DP=7189;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:139,153:292:99:3764,0,3975:48,91,62,91
chr1	229738170	.	T	G	3605.86	PASS	AC=1;AF=0.652;AN=2;DP=4405;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,89:169:99:2331,0,1965:41,39,49,40
chr1	229738236	.	G	A	1369.73	PASS	AC=2;AF=0.788;AN=2;DP=5426;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,176:177:99:5333,481,0:1,0,82,94
chr1	229746019	.	C	T	3088.17	PASS	AC=1;AF=0.652;AN=2;DP=3079;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,53:124:99:1190,0,1808:33,38,23,30
chr1	229750036	.	C	T	2896.1	PASS	AC=1;AF=0.528;AN=2;DP=3740;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant8-variant10-variant12-variant15-variant18-variant19-variant21-variant25-variant27-variant28-variant31-variant32-variant33-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:114,98:212:99:2596,0,2914:56,58,46,52
chr1	229750343	.	T	G	580.7	PASS	AC=1;AF=0.591;AN=2;DP=1848;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant20-variant23-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1436,0,1207:16,32,15,36
chr1	229762054	.	T	A	3191.04	PASS	AC=1;AF=0.643;AN=2;DP=3613;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,101:193:99:2123,0,2117:44,48,52,49
chr1	229768297	.	C	T	398.91	PASS	AC=1;AF=0.652;AN=2;DP=904;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:319,0,503:7,13,3,9
chr1	229772693	.	T	G	3468.93	PASS	AC=1;AF=0.652;AN=2;DP=4790;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,72:173:99:2109,0,2636:54,47,47,25
chr1	229781532	.	T	G	591.69	PASS	AC=1;AF=0.661;AN=2;DP=548;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:325,0,241:6,1,8,1
chr1	229781744	.	T	C	4710.12	PASS	AC=1;AF=0.652;AN=2;DP=7106;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:128,118:246:99:2961,0,3285:58,70,57,61
chr1	229783236	.	T	C	3333.64	PASS	AC=2;AF=0.932;AN=2;DP=3436;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3400,264,0:0,0,53,34
chr1	229783240	.	T	C	4417.22	PASS	AC=1;AF=0.636;AN=2;DP=2574;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1196,0,1173:29,13,24,19
chr1	229790048	.	A	G	1783.76	PASS	AC=1;AF=0.653;AN=2;DP=4892;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:1854,0,1924:42,35,36,41
chr1	229790324	.	C	T	357.79	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant15-variant28-variant32	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:593,0,517:2,14,2,16
chr1	229795070	.	T	G	661.86	PASS	AC=1;AF=0.653;AN=2;DP=3291;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,65:105:99:1574,0,1039:20,20,28,37
chr1	229795330	.	T	C	939.01	PASS	AC=1;AF=0.625;AN=2;DP=2493;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1124,0,1200:24,21,28,19
chr1	229795683	.	AT	A	695.61	PASS	AC=1;AF=0.609;AN=2;DP=2005;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:687,0,977:29,12,22,8
chr1	229795714	.	T	C	1075.02	PASS	AC=1;AF=0.579;AN=2;DP=1817;MQ=60;set=variant2-variant6-variant9-variant11-variant12-variant14-variant15-variant16-variant23-variant24-variant27-variant28-variant29-variant33-variant35-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,55:118:99:1546,0,1870:43,20,41,14
chr1	229795966	.	AT	A	1223.67	PASS	AC=1;AF=0.625;AN=2;DP=3344;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,69:121:99:1994,0,1381:10,42,17,52
chr1	230371883	.	G	A	735.85	PASS	AC=1;AF=0.603;AN=2;DP=1914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:1108,0,1061:20,21,19,20
chr1	230386341	.	T	A	1785.88	PASS	AC=1;AF=0.6;AN=2;DP=2989;set=variant-variant2-variant4-variant5-variant6-variant11-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,95:171:99:2231,0,1863:27,49,42,53
chr1	230390717	.	C	T	262.67	PASS	AC=1;AF=0.5;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant15-variant25-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:225,0,308:8,1,5,3
chr1	230410162	.	C	T	1089.33	PASS	AC=1;AF=0.563;AN=2;DP=947;MQ=60;set=variant-variant2-variant11-variant15-variant25-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,47:113:99:1061,0,1548:37,29,26,21
chr1	230410374	.	G	A	351.26	PASS	AC=1;AF=0.556;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant11-variant15-variant25-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:177,0,321:4,7,1,4
chr1	230415025	.	A	G	2412.05	PASS	AC=1;AF=0.65;AN=2;DP=6726;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:130,124:254:99:3068,0,3031:67,63,66,58
chr1	230415810	.	G	A	904.25	PASS	AC=1;AF=0.5;AN=2;DP=759;MQ=60;set=variant-variant2-variant5-variant6-variant11-variant15-variant25-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1319,0,1154:15,28,19,30
chr1	230415846	.	G	C	1034.66	PASS	AC=1;AF=0.5;AN=2;DP=752;MQ=60;set=variant-variant2-variant5-variant6-variant11-variant15-variant25-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1233,0,1103:16,26,20,25
chr1	230416130	.	G	A	1975.33	PASS	AC=1;AF=0.5;AN=2;DP=1638;MQ=60;set=variant-variant2-variant5-variant6-variant11-variant15-variant25-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:115,98:213:99:2252,0,2695:53,62,48,50
chr1	230416399	.	G	T	39.19	PASS	AC=1;AF=0.625;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:555,0,340:7,9,10,12
chr1	230416953	.	A	G	1086.16	PASS	AC=1;AF=0.625;AN=2;DP=3360;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,64:155:99:1540,0,2348:48,43,33,31
chr1	230417056	.	G	C	1380.35	PASS	AC=1;AF=0.571;AN=2;DP=2154;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant11-variant12-variant15-variant25-variant26-variant28-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:108,95:203:99:2405,0,2830:58,50,49,46
chr1	230417320	.	T	C	833.45	PASS	AC=1;AF=0.5;AN=2;DP=761;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant11-variant15-variant25-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:62,46:108:99:1730,0,3079:30,32,24,22
chr1	230417321	.	T	A	833.45	PASS	AC=1;AF=0.5;AN=2;DP=765;MQ=60;set=variant-variant2-variant5-variant6-variant11-variant15-variant25-variant26-variant28	GT:AD:DP:GQ:PL:SB	0/1:62,47:109:99:1730,0,3079:30,32,25,22
chr1	230417557	.	T	C	1517.35	PASS	AC=1;AF=0.845;AN=2;DP=3359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,55:98:99:2219,0,2318:25,18,30,25
chr1	230417560	.	A	G	1517.35	PASS	AC=1;AF=0.845;AN=2;DP=3349;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,56:99:99:2219,0,2318:25,18,31,25
chr1	230417664	.	C	G	2224.78	PASS	AC=1;AF=0.556;AN=2;DP=4161;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,86:178:99:2220,0,2349:53,39,46,40
chr1	230417999	.	C	T	334.39	PASS	AC=1;AF=0.689;AN=2;DP=1181;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:482,0,396:6,11,5,13
chr1	230451331	.	T	C	110.44	PASS	AC=1;AF=0.594;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant10-variant11-variant15-variant20-variant25-variant26-variant27-variant28-variant30-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:63:63,0,422:4,3,1,1
chr1	230451349	.	T	C	132.17	PASS	AC=1;AF=0.594;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant10-variant11-variant15-variant20-variant25-variant26-variant27-variant28-variant30-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:102,0,419:4,3,2,1
chr1	230451935	.	C	CAT	673.24	PASS	AC=2;AF=0.878;AN=2;DP=2001;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2709,186,0:0,0,37,23
chr1	230451978	.	G	A	993.77	PASS	AC=2;AF=0.888;AN=2;DP=2885;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2801,279,0:0,0,49,44
chr1	230459433	.	GC	G	650.31	PASS	AC=1;AF=0.719;AN=2;DP=2153;MQ=60;set=variant2-variant3-variant4-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,22:68:99:480,0,1214:12,34,4,18
chr1	230473103	.	A	C	377.27	PASS	AC=1;AF=0.641;AN=2;DP=1310;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:586,0,332:2,9,3,15
chr1	230497940	.	G	T	1827.68	PASS	AC=2;AF=0.763;AN=2;DP=3384;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,90:92:99:2790,253,0:1,1,65,25
chr1	230498232	.	C	T	1084.63	PASS	AC=2;AF=0.763;AN=2;DP=1426;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1463,111,0:0,0,4,33
chr1	230503684	.	C	T	1188.6	PASS	AC=2;AF=0.756;AN=2;DP=2360;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2451,225,0:0,0,53,22
chr1	230504070	.	C	G	235.14	PASS	AC=2;AF=0.792;AN=2;DP=363;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:308,21,0:0,0,1,6
chr1	230513128	.	G	A	2007.27	PASS	AC=2;AF=0.763;AN=2;DP=2594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3019,293,0:0,0,62,36
chr1	230561700	.	G	GC	459.58	PASS	AC=2;AF=1;AN=2;DP=681;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,24:25:65:746,65,0:1,0,4,20
chr1	230778491	.	G	C	4029.16	PASS	AC=1;AF=0.793;AN=2;DP=5680;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,87:168:99:2335,0,2267:23,58,26,61
chr1	230795177	.	T	C	1396.63	PASS	AC=1;AF=0.803;AN=2;DP=1647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:841,0,426:12,5,22,6
chr1	230796326	.	A	G	406.7	PASS	AC=1;AF=0.778;AN=2;DP=59;FS=0;MQ=60;set=variant3-variant7-variant9-variant12-variant14-variant15-variant29-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:27:165,0,27:1,0,4,0
chr1	230819155	.	TAAAAA	TAAAA,TAAA,TA,TAA,T	153.87	PASS	AC=0,2,0,0,0;AF=0.286,0.345,0.024,0.071,0.012;AN=2;DP=693;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:12:25:1,0,9,2
chr1	230819479	.	G	GT,GTT	658.59	PASS	AC=1,0;AF=0.714,0.129;AN=2;DP=1828;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant-variant30-variant31-variant32-variant33-variant34-variant41-variant42	GT:DP:GQ:SB	0/1:51:2:3,4,11,33
chr1	230820763	.	C	CACATT	3831.97	PASS	AC=1;AF=0.685;AN=2;DP=1782;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:1538,0,1258:25,7,32,7
chr1	230820780	.	TA	T	1733.7	PASS	AC=1;AF=0.62;AN=2;DP=2315;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1468,0,2005:38,19,37,16
chr1	230822607	.	G	A	203.7	PASS	AC=2;AF=0.837;AN=2;DP=920;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1282,105,0:0,0,29,6
chr1	230825942	.	A	G	938.31	PASS	AC=1;AF=0.685;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:458,0,776:12,18,7,12
chr1	230828987	.	C	A	2067.53	PASS	AC=1;AF=0.685;AN=2;DP=1268;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:689,0,429:12,10,16,11
chr1	230838258	.	G	A	6969.93	PASS	AC=1;AF=0.577;AN=2;DP=4478;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,114:203:99:2874,0,2020:51,38,70,44
chr1	230838331	.	G	T	11127.1	PASS	AC=1;AF=0.577;AN=2;DP=7098;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:162,168:330:99:4242,0,3976:89,73,86,82
chr1	230841687	.	T	C	1895.07	PASS	AC=2;AF=0.92;AN=2;DP=4390;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3877,401,0:0,0,75,59
chr1	230845794	.	A	G	2012.81	PASS	AC=1;AF=0.656;AN=2;DP=5298;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,114:205:99:2929,0,2153:53,38,64,50
chr1	230849799	.	A	G	873.1	PASS	AC=1;AF=0.652;AN=2;DP=999;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:459,0,471:13,5,13,3
chr1	230849872	.	C	T	1600.46	PASS	AC=1;AF=0.652;AN=2;DP=1827;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:1082,0,771:19,12,25,12
chr1	230850083	.	C	T	134.9	PASS	AC=1;AF=0.531;AN=2;DP=695;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant13-variant15-variant20-variant22-variant28-variant34-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:789,0,677:10,19,8,19
chr1	230883466	.	C	T	902.95	PASS	AC=1;AF=0.567;AN=2;DP=2507;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,38:86:99:935,0,1288:17,31,15,23
chr1	230883484	.	T	C	564.74	PASS	AC=2;AF=0.671;AN=2;DP=2838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2417,225,0:0,0,26,49
chr1	230883499	.	T	C	446.73	PASS	AC=2;AF=0.671;AN=2;DP=2337;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2099,191,0:0,0,20,44
chr1	230891248	.	C	T	574.61	PASS	AC=1;AF=0.611;AN=2;DP=617;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:396,0,273:3,8,1,11
chr1	230898231	.	T	A	589.48	PASS	AC=1;AF=0.583;AN=2;DP=916;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:859,0,503:14,4,23,6
chr1	230898494	.	C	T	1742.51	PASS	AC=1;AF=0.589;AN=2;DP=3123;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,65:147:99:1475,0,2217:38,44,26,39
chr1	230898615	.	G	GA	195.92	PASS	AC=1;AF=0.583;AN=2;DP=633;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,14:41:99:312,0,718:7,20,3,11
chr1	230903234	.	A	G	484.52	PASS	AC=1;AF=0.683;AN=2;DP=580;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:104,0,258:6,2,2,2
chr1	230903350	.	T	C	1463.61	PASS	AC=1;AF=0.542;AN=2;DP=2662;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,71:137:99:1694,0,1619:38,28,44,27
chr1	230904911	.	C	T	710.02	PASS	AC=1;AF=0.587;AN=2;DP=1625;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1217,0,1165:29,15,31,15
chr1	230910485	.	CTTT	CTT,CT,C	63.73	PASS	AC=1,0,0;AF=0.353,0.118,0.029;AN=2;DP=629;set=filterInvariant3-variant5-variant8-variant11-variant12-filterInvariant13-variant15-variant17-variant20-variant22-variant27-filterInvariant31-filterInvariant38-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:21:62:0,7,0,14
chr1	230914612	.	A	G	722.71	PASS	AC=1;AF=0.587;AN=2;DP=1836;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,49:115:99:1199,0,1742:36,30,30,19
chr1	230927353	.	T	A	219.11	PASS	AC=1;AF=0.641;AN=2;DP=721;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,15:18:83:597,0,83:3,0,15,0
chr1	230927871	.	T	C	233.38	PASS	AC=1;AF=0.641;AN=2;DP=955;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:333,0,119:3,4,7,9
chr1	230928351	.	C	T	1166.65	PASS	AC=1;AF=0.667;AN=2;DP=981;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:767,0,719:7,16,7,17
chr1	230928512	.	C	G	1323.61	PASS	AC=1;AF=0.597;AN=2;DP=3539;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,48:105:99:1180,0,1644:38,19,33,15
chr1	230933898	.	C	T	841.76	PASS	AC=1;AF=0.55;AN=2;DP=1787;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant27-variant28-variant30-variant31-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,61:120:99:1352,0,1460:33,26,35,26
chr1	230973407	.	G	T	115.45	PASS	AC=1;AF=0.782;AN=2;DP=903;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:272,0,438:10,7,6,7
chr1	230974261	.	A	T	493.17	PASS	AC=1;AF=0.563;AN=2;DP=769;set=variant3-variant4-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant24-variant25-variant26-variant28-variant29-variant31-filterInvariant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:310,0,454:9,6,9,8
chr1	230974774	.	T	C	1428.04	PASS	AC=1;AF=0.768;AN=2;DP=4779;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,69:118:99:1683,0,1163:25,24,36,33
chr1	230975454	.	A	G	2750.1	PASS	AC=1;AF=0.788;AN=2;DP=7002;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,110:192:99:2791,0,1896:48,34,54,56
chr1	230979657	.	G	A	1052.02	PASS	AC=1;AF=0.5;AN=2;DP=724;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:547,0,918:8,23,7,15
chr1	230991682	.	C	T	352.24	PASS	AC=1;AF=0.5;AN=2;DP=148;MQ=60;set=variant10-variant15-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:519,0,724:14,13,11,13
chr1	231003851	.	G	C	259.4	PASS	AC=1;AF=0.556;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant13-variant15-variant24-variant25-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:242,0,151:5,0,5,4
chr1	231004431	.	T	C	50.26	PASS	AC=2;AF=1;AN=2;DP=73;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant12-variant13-variant15-variant21-variant22-variant23-variant25-variant35-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,1,4
chr1	231004847	.	G	C	802.14	PASS	AC=1;AF=0.5;AN=2;DP=882;MQ=60;set=variant7-variant8-variant9-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant28-variant29	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:1024,0,1266:18,27,17,22
chr1	231004888	.	T	C	996	PASS	AC=1;AF=0.558;AN=2;DP=1552;MQ=60;set=variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:988,0,1062:15,22,18,16
chr1	231042661	.	T	G	1207.04	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=5.969;FractionInformativeReads=1;MQ=60;MQRankSum=-0.434;QD=10.87;ReadPosRankSum=-1.761;SOR=0.337;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:56,55:111:99:1235,0,1438:35,21,28,27
chr1	231042732	.	T	A	697.57	PASS	AC=1;AF=0.691;AN=2;DP=2702;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,54:121:99:1307,0,1582:32,35,22,32
chr1	231047310	.	TAC	T	400.56	PASS	AC=1;AF=0.8;AN=2;DP=703;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:831,0,637:7,10,9,12
chr1	231047392	.	G	A	130.47	PASS	AC=1;AF=0.857;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:151,0,74:1,2,0,4
chr1	231057247	.	A	T	194.06	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant16-variant18-variant25-variant29	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:358,0,159:3,4,6,10
chr1	231057310	.	C	T	43.44	PASS	AC=1;AF=0.839;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:103,0,160:1,4,0,3
chr1	231059784	.	C	T	268.18	PASS	AC=1;AF=0.788;AN=2;DP=801;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:300,0,475:2,12,4,8
chr1	231064578	.	T	TCTC	253.6	PASS	AC=1;AF=0.833;AN=2;DP=339;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:131,0,355:6,3,3,1
chr1	231069340	.	C	T	96.85	PASS	AC=1;AF=0.667;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant16-variant18-variant25-variant29	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:214,0,185:5,0,6,1
chr1	231069652	.	A	C	566.74	PASS	AC=1;AF=0.788;AN=2;DP=1099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:497,0,571:4,15,3,14
chr1	231076177	.	A	G	465.95	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:494,0,844:19,15,13,9
chr1	231081304	.	T	G	274.65	PASS	AC=1;AF=0.686;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:420,0,340:1,9,2,12
chr1	231091972	.	C	T	250.87	PASS	AC=1;AF=0.646;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant15-variant17-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant33-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:460,0,414:11,4,11,6
chr1	231092180	.	G	A	587.86	PASS	AC=1;AF=0.591;AN=2;DP=1450;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1167,0,779:17,19,21,27
chr1	231092211	.	T	TG	515.72	PASS	AC=1;AF=0.591;AN=2;DP=1188;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:1116,0,869:14,16,13,24
chr1	231093785	.	CT	C	366.45	PASS	AC=2;AF=0.77;AN=2;DP=784;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:652,69,0:0,0,18,5
chr1	231093879	.	C	G	691.13	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:719,0,865:22,19,18,15
chr1	231094050	.	GAA	GA,GAAA,G	355.26	PASS	AC=1,0,0;AF=0.443,0.071,0.043;AN=2;DP=1839;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant22-variant23-variant25-variant26-filterInvariant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant39-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:40:99:5,9,8,18
chr1	231097042	.	G	A	1233.38	PASS	AC=1;AF=0.5;AN=2;DP=197;MQ=60;set=variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,55:118:99:1262,0,1539:27,36,26,29
chr1	231097194	.	G	A	311.21	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:339,0,142:1,4,1,9
chr1	231114420	.	A	C	415.85	PASS	AC=1;AF=0.5;AN=2;DP=62;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:320,0,577:12,12,8,4
chr1	231114465	.	C	G	1096.21	PASS	AC=1;AF=0.5;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-filterInvariant10-variant11-variant14-variant15-variant16-variant18-variant22-variant24-variant25-variant29-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:604,0,608:12,14,13,10
chr1	231114595	.	C	T	425.7	PASS	AC=1;AF=0.63;AN=2;DP=1692;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant29-variant32-variant33-variant34-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,39:85:99:951,0,1073:24,22,19,20
chr1	231124055	.	T	C	1205.98	PASS	AC=1;AF=0.604;AN=2;DP=1715;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant29-variant32-variant33-variant34-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:885,0,1187:24,21,20,20
chr1	231154921	.	C	CT,CTT,CTTT	5210.18	PASS	AC=2,0,0;AF=0.545,0.398,0.011;AN=2;DP=11192;set=Intersection	GT:DP:GQ:SB	1/1:329:99:17,16,142,154
chr1	231161817	.	TA	TAA,T,TAAA	36.59	PASS	AC=0,1,0;AF=0.21,0.242,0.113;AN=2;DP=710;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-variant17-variant20-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:28:91:7,11,4,6
chr1	231175615	.	C	T	240.3	PASS	AC=1;AF=0.5;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant12-variant13-variant15	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:151,0,192:5,2,4,3
chr1	231175644	.	C	G	411.79	PASS	AC=1;AF=0.536;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant9-variant12-variant14-variant15-variant16-variant22-variant23-variant25-variant27-variant33-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:182,0,184:4,4,5,3
chr1	231176064	.	GC	G	248.13	PASS	AC=1;AF=0.591;AN=2;DP=232;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant18-variant21-variant24-variant25-variant27-variant28-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:123,0,153:1,5,1,4
chr1	231297992	.	A	G	788.23	PASS	AC=2;AF=1;AN=2;DP=1109;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1174,111,0:0,0,17,20
chr1	231298031	.	C	G	1031.49	PASS	AC=2;AF=1;AN=2;DP=1172;FS=0;MQ=60;MQRankSum=-1.448;ReadPosRankSum=0.869;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1752,117,0:0,0,19,20
chr1	231298037	.	T	G	1031.49	PASS	AC=2;AF=1;AN=2;DP=1158;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1710,114,0:0,0,19,19
chr1	231323140	.	T	A	151.77	PASS	AC=2;AF=1;AN=2;DP=311;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:300,21,0:0,0,6,1
chr1	231377081	.	C	T	2116.78	PASS	AC=1;AF=0.694;AN=2;DP=3330;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,71:133:99:1732,0,1496:33,29,35,36
chr1	231401596	.	T	C	2097.64	PASS	AC=1;AF=0.681;AN=2;DP=2898;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,33:78:99:831,0,1251:14,31,10,23
chr1	231401902	.	G	A	4926.56	PASS	AC=1;AF=0.708;AN=2;DP=5534;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,86:194:99:1996,0,2649:63,45,47,39
chr1	231406295	.	T	C	694.22	PASS	AC=1;AF=0.681;AN=2;DP=535;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:250,0,437:12,1,7,1
chr1	231408091	.	A	G	1671.78	PASS	AC=1;AF=0.55;AN=2;DP=2425;MQ=60;set=variant-variant2-variant4-variant8-variant15-variant16-variant19-variant20-variant21-variant23-variant25-variant29-variant32-variant35-variant36-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,81:158:99:2079,0,1933:40,37,42,39
chr1	231468606	.	A	G	5952.04	PASS	AC=1;AF=0.684;AN=2;DP=15319;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:281,229:510:99:5331,0,7102:153,128,129,100
chr1	231468953	.	G	A	3514.47	PASS	AC=1;AF=0.718;AN=2;DP=9835;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,155:323:99:3902,0,4440:87,81,78,77
chr1	231470650	.	T	C	6602.35	PASS	AC=1;AF=0.684;AN=2;DP=16783;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:280,205:485:99:4647,0,6824:126,154,92,113
chr1	231470772	.	A	G	1936.45	PASS	AC=1;AF=0.684;AN=2;DP=3448;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,39:94:99:1097,0,1786:11,44,8,31
chr1	231471268	.	AT	A	392.93	PASS	AC=1;AF=0.538;AN=2;DP=375;MQ=60;set=variant-variant6-variant7-variant11-variant15-variant17-variant26-variant28-variant29-variant30-variant33-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:651,0,802:15,9,13,7
chr1	231480507	.	A	G	387.7	PASS	AC=1;AF=0.697;AN=2;DP=1667;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:601,0,665:7,18,10,11
chr1	231486951	.	TAAAA	TAAA,TA,TAA,T	110.85	PASS	AC=0,1,0,0;AF=0.058,0.288,0.327,0.058;AN=2;DP=475;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant31-variant33-variant35-variant37-variant38-variant39-variant42-variant44	GT:DP:GQ:SB	0/2:13:99:6,1,6,0
chr1	231486989	.	A	C	709.82	PASS	AC=1;AF=0.718;AN=2;DP=2133;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,30:55:99:910,0,667:19,6,25,5
chr1	231487017	.	T	C	1080.6	PASS	AC=1;AF=0.692;AN=2;DP=3154;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,45:101:99:1106,0,1479:37,19,32,13
chr1	231488524	.	C	T	1277.86	PASS	AC=1;AF=0.684;AN=2;DP=4848;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,69:149:99:1802,0,2320:32,48,27,42
chr1	231489353	.	G	T	5356.22	PASS	AC=1;AF=0.711;AN=2;DP=13074;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:250,205:455:99:4774,0,6217:106,144,79,126
chr1	231490105	.	C	T	2466.59	PASS	AC=1;AF=0.718;AN=2;DP=6644;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,96:202:99:2310,0,2601:49,57,43,53
chr1	231490819	.	A	AT	39.79	PASS	AC=1;AF=0.726;AN=2;DP=320;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:290,0,126:0,5,1,9
chr1	231500353	.	A	AT	6108.21	PASS	AC=1;AF=0.679;AN=2;DP=16886;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:251,262:513:99:6386,0,6094:117,134,124,138
chr1	231502245	.	T	A	1174.94	PASS	AC=1;AF=0.526;AN=2;DP=6751;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,81:202:99:1411,0,3138:42,79,28,53
chr1	231502310	.	T	C	1019.67	PASS	AC=1;AF=0.676;AN=2;DP=2438;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1191,0,894:7,25,11,32
chr1	231506557	.	G	A	734.14	PASS	AC=1;AF=0.676;AN=2;DP=1067;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:428,0,352:4,9,5,11
chr1	231664607	.	C	T	2056.5	PASS	AC=1;AF=0.571;AN=2;DP=3838;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant21-variant22-variant24-variant25-variant26-variant31-variant34-variant35-variant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,99:207:99:2477,0,2718:48,60,49,50
chr1	231697030	.	G	A	498.53	PASS	AC=1;AF=0.712;AN=2;DP=401;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:300,0,144:0,4,1,8
chr1	231699398	.	ATTT	AT,ATT,A	74.07	PASS	AC=1,0,0;AF=0.226,0.419,0.048;AN=2;DP=613;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:22:99:3,10,3,6
chr1	231727447	.	A	G	1428.4	PASS	AC=1;AF=0.742;AN=2;DP=4469;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,91:166:99:2289,0,1752:32,43,39,52
chr1	231747989	.	G	A	115.49	PASS	AC=1;AF=0.789;AN=2;DP=621;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:123,0,386:1,10,1,3
chr1	231762398	.	C	CTG,CTGTGTGTGTG,CTGTGTGTGTGTG	216.52	PASS	AC=1,0,0;AF=0.417,0.125,0.021;AN=2;DP=594;set=variant-variant4-variant7-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant38-variant39-variant40-variant42	GT:DP:GQ:SB	0/1:36:99:8,5,14,9
chr1	231762413	.	T	TGTGTGCGC,TGTGTGTGTGC,TGTGTGTGTGTGC,TGTATGTCTGTGTGTGTGTGTGTGTGTGCGC,TGTATGTCTGTGTGTGTGTGTGTGTGTGTGC,TGTATGTCTGTGTGTGTGTGTGTGTGTGTGTGC	267.92	PASS	AC=0,1,0,0,0,0;AF=0.013,0.474,0.115,0.051,0.013,0.013;AN=2;DP=1157;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:39:99:15,12,8,4
chr1	231830295	.	G	A	3253.46	PASS	AC=1;AF=0.611;AN=2;DP=4822;MQ=60;set=variant-variant3-variant4-variant5-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,127:230:99:3099,0,2470:53,50,66,61
chr1	231858993	.	GA	G	451.89	PASS	AC=2;AF=0.966;AN=2;DP=1824;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1251,123,0:0,0,23,18
chr1	231859181	.	G	A	1467.46	PASS	AC=1;AF=0.645;AN=2;DP=2273;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,53:90:99:1441,0,1019:19,18,25,28
chr1	231936016	.	A	G	1849.76	PASS	AC=2;AF=1;AN=2;DP=2552;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2629,257,0:0,0,30,56
chr1	231954427	.	C	T	799.89	PASS	AC=1;AF=0.731;AN=2;DP=2670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1362,0,1487:19,29,20,29
chr1	231954872	.	C	T	577.04	PASS	AC=1;AF=0.64;AN=2;DP=1283;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant23-variant28-variant32-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:722,0,1001:14,20,8,17
chr1	231956086	.	A	T	1928.79	PASS	AC=1;AF=0.684;AN=2;DP=2437;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,35:93:99:883,0,1338:33,25,16,19
chr1	231991030	.	CAT	C	712.12	PASS	AC=1;AF=0.6;AN=2;DP=861;MQ=60;set=variant-variant2-variant5-variant6-variant10-variant12-variant13-variant14-variant15-variant28-variant31-variant33-variant34-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1673,0,1560:11,29,14,29
chr1	231991131	.	C	G	272.38	PASS	AC=1;AF=0.607;AN=2;DP=398;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant10-variant12-variant13-variant14-variant15-variant28-variant31-variant33-variant34-variant36-filterInvariant39	GT:AD:DP:GQ:PL:SB	0/1:14,26:40:99:595,0,269:7,7,11,15
chr1	232002392	.	A	G	1773.18	PASS	AC=1;AF=0.625;AN=2;DP=3299;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant26-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,84:146:99:2084,0,1563:35,27,43,41
chr1	232094729	.	G	A	555.98	PASS	AC=1;AF=0.587;AN=2;DP=320;MQ=60;set=variant2-variant3-variant4-variant5-variant10-variant11-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:484,0,242:0,7,1,12
chr1	232144598	.	A	T	3950.95	PASS	AC=1;AF=0.571;AN=2;DP=2711;MQ=60;set=variant2-variant3-variant4-variant5-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,99:176:99:2361,0,1856:42,35,57,42
chr1	232144887	.	A	G	1953.07	PASS	AC=1;AF=0.571;AN=2;DP=1143;MQ=60;set=variant2-variant3-variant4-variant5-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:781,0,796:9,18,10,18
chr1	232145181	.	G	A	326.96	PASS	AC=1;AF=0.583;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant11-variant13-variant15-variant17-variant19-variant22-variant23-variant25-variant28-variant29-variant33-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:0,1,1,1
chr1	232145203	.	T	TTTAC,TTTAA	592.73	PASS	AC=1,0;AF=0.478,0.217;AN=2;DP=197;MQ=60;set=variant2-variant3-variant4-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:8:99:2,2,2,2
chr1	232145221	.	A	G	896.19	PASS	AC=1;AF=0.579;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant23-variant25-variant28-variant29-variant33-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,274:3,3,4,1
chr1	232145222	.	T	C	896.19	PASS	AC=1;AF=0.579;AN=2;DP=248;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant23-variant25-variant28-variant29-variant33-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,274:3,3,4,1
chr1	232145424	.	C	T	740.83	PASS	AC=1;AF=0.571;AN=2;DP=412;MQ=60;set=variant2-variant3-variant4-variant5-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:273,0,207:4,5,3,8
chr1	232173521	.	C	T	764.56	PASS	AC=1;AF=0.587;AN=2;DP=3382;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant32-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,60:165:99:1596,0,2425:55,50,27,33
chr1	232173560	.	G	T	1926.28	PASS	AC=1;AF=0.591;AN=2;DP=2773;set=variant4-variant5-variant8-variant10-variant11-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,80:140:99:2096,0,1498:30,30,44,36
chr1	232173717	.	CAGTA	C	2317.09	PASS	AC=1;AF=0.538;AN=2;DP=1874;set=variant10-variant15-variant16-variant19-variant23-variant25-variant27-variant31-variant33-variant34-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,74:145:99:2855,0,3660:38,33,36,38
chr1	232174173	.	T	C	3900.04	PASS	AC=1;AF=0.625;AN=2;DP=3096;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,62:138:99:1492,0,1832:47,29,34,28
chr1	232174775	.	T	C	573.94	PASS	AC=1;AF=0.625;AN=2;DP=955;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,33:51:99:949,0,502:9,9,18,15
chr1	232175697	.	G	GCTGT	2572.16	PASS	AC=1;AF=0.625;AN=2;DP=1793;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:1331,0,1405:4,22,9,25
chr1	232176195	.	G	T	512.51	PASS	AC=1;AF=0.591;AN=2;DP=1597;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant32-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,42:99:99:902,0,1413:26,31,21,21
chr1	232176306	.	G	A	311.63	PASS	AC=1;AF=0.58;AN=2;DP=943;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,16:51:99:427,0,965:15,20,7,9
chr1	232176987	.	C	T	8838.13	PASS	AC=1;AF=0.62;AN=2;DP=8209;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,168:361:99:4281,0,4982:80,113,69,99
chr1	232534303	.	CT	C,CTT	147.56	DRAGENHardINDEL	AC=1,0;AF=0.483,0.017;AN=2;DP=17946;set=FilteredInAll	GT:DP:GQ:SB	0/1:633:99:269,280,43,41
chr1	232535030	.	C	T	3366.55	PASS	AC=2;AF=1;AN=2;DP=4642;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4439,431,0:0,0,57,87
chr1	232564096	.	CTTTT	CTTT,CTT,CTTTTT,C	95.49	PASS	AC=0,1,0,0;AF=0.3,0.2,0.02,0.02;AN=2;DP=601;set=variant-variant4-variant5-variant8-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant23-variant24-filterInvariant25-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41	GT:DP:GQ:SB	0/2:22:99:8,4,6,4
chr1	232568293	.	A	G	1511.77	PASS	AC=1;AF=0.92;AN=2;DP=2859;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:804,0,1429:13,33,11,22
chr1	232577281	.	T	G	102.1	PASS	AC=1;AF=0.565;AN=2;DP=789;FractionInformativeReads=1;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:625,0,771:18,9,14,6
chr1	232596653	.	A	G	1834.28	PASS	AC=1;AF=0.5;AN=2;DP=1048;MQ=60;set=variant4-variant15-variant16-variant17-variant21-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:84,90:174:99:2508,0,2099:44,40,46,44
chr1	232650750	.	A	G	8663.53	PASS	AC=2;AF=0.977;AN=2;DP=12375;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,365:365:99:11432,1095,0:0,0,172,193
chr1	232650867	.	C	T	2098.45	PASS	AC=2;AF=0.78;AN=2;DP=9129;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,261:261:99:8008,778,0:0,0,119,142
chr1	232697081	.	C	T	46.75	PASS	AC=2;AF=0.714;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant22-variant32-variant33-variant34-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:213,18,0:0,0,5,1
chr1	232940953	.	T	C	1062.34	PASS	AC=1;AF=0.5;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant25-variant30	GT:AD:DP:GQ:PL:SB	0/1:70,62:132:99:1600,0,1884:37,33,32,30
chr1	232941153	.	C	T	793.97	PASS	AC=1;AF=0.782;AN=2;DP=3997;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:1250,0,1411:22,29,16,31
chr1	232941215	.	A	G	1139.44	PASS	AC=1;AF=0.5;AN=2;DP=458;MQ=60;set=variant5-variant15-variant25-variant30	GT:AD:DP:GQ:PL:SB	0/1:57,60:117:99:1676,0,1530:30,27,33,27
chr1	232941677	.	G	T	2074.98	PASS	AC=1;AF=0.5;AN=2;DP=854;MQ=60;set=variant5-variant15-variant25-variant30	GT:AD:DP:GQ:PL:SB	0/1:140,125:265:99:2826,0,3397:64,76,66,59
chr1	232942251	.	A	G	1321.8	PASS	AC=1;AF=0.5;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant25-variant30	GT:AD:DP:GQ:PL:SB	0/1:79,50:129:99:1316,0,2040:43,36,25,25
chr1	232944569	.	C	T	4287.79	PASS	AC=1;AF=0.78;AN=2;DP=12446;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,182:361:99:4711,0,4871:79,100,76,106
chr1	232945039	.	G	A	1209.15	PASS	AC=1;AF=0.5;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant25-variant30	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:1023,0,1481:34,11,25,11
chr1	232945255	.	C	G	4270.43	PASS	AC=1;AF=0.5;AN=2;DP=1391;MQ=60;set=variant5-variant15-variant25-variant30	GT:AD:DP:GQ:PL:SB	0/1:239,213:452:99:4819,0,5975:121,118,110,103
chr1	233086394	.	C	G	2099.81	PASS	AC=1;AF=0.5;AN=2;DP=1060;MQ=60;set=variant2-variant11-variant15-variant27-variant33	GT:AD:DP:GQ:PL:SB	0/1:127,113:240:99:2732,0,3139:73,54,56,57
chr1	233091276	.	CTTT	CTT,C,CT,CTTTT	214.73	PASS	AC=1,0,0,0;AF=0.393,0.018,0.071,0.018;AN=2;DP=1164;set=variant-variant2-variant5-variant7-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant17-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant26-variant27-variant29-variant31-variant33-filterInvariant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:43:99:11,10,10,12
chr1	233091463	.	T	A	1012.25	PASS	AC=1;AF=0.5;AN=2;DP=1095;MQ=60;set=variant-variant2-variant7-variant11-variant14-variant15-variant16-variant20-variant23-variant25-variant27-variant29-variant33-variant37	GT:AD:DP:GQ:PL:SB	0/1:37,55:92:99:1408,0,768:18,19,27,28
chr1	233114608	.	C	T	667.97	PASS	AC=1;AF=0.5;AN=2;DP=531;MQ=60;set=variant-variant2-variant7-variant10-variant11-variant14-variant15-variant16-variant20-variant23-variant25-variant27-variant29-variant33-variant37	GT:AD:DP:GQ:PL:SB	0/1:16,33:49:99:922,0,477:1,15,10,23
chr1	233119881	.	T	C	170.98	PASS	AC=1;AF=0.545;AN=2;DP=436;set=variant3-variant7-variant10-variant11-variant12-variant14-variant15-variant23-variant24-variant29-variant38	GT:AD:DP:GQ:PL:SB	0/1:39,12:51:99:143,0,798:27,12,8,4
chr1	233134086	.	C	T	3536.21	PASS	AC=1;AF=0.563;AN=2;DP=2189;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant16-variant18-variant20-variant25-variant27-variant28-variant33-variant34-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,66:153:99:1578,0,2252:48,39,35,31
chr1	233137225	.	CATAA	C	52.73	PASS	AC=2;AF=0.98;AN=2;DP=137;FS=0;MQ=60;MQRankSum=2.219;ReadPosRankSum=-0.361;set=variant-variant2-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant29-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,3,2
chr1	233152910	.	A	AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT	1069.08	PASS	AC=1;AF=0.62;AN=2;DP=993;set=variant-variant2-variant3-variant4-variant5-variant8-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:796,0,5581:9,16,3,18
chr1	233193578	.	C	A	3148.39	PASS	AC=1;AF=0.607;AN=2;DP=1268;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant27-variant28-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,54:114:99:1547,0,1580:37,23,42,12
chr1	233193599	.	C	CA,CAA	1254.67	PASS	AC=1,0;AF=0.744,0.012;AN=2;DP=5143;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:160:99:55,29,44,32
chr1	233193800	.	C	T	2681.48	PASS	AC=1;AF=0.594;AN=2;DP=1339;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,61:115:99:1708,0,1562:23,31,25,36
chr1	233194199	.	C	T	3105.05	PASS	AC=1;AF=0.594;AN=2;DP=1961;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,88:157:99:2454,0,1568:40,29,53,35
chr1	233194351	.	A	G	2494.32	PASS	AC=1;AF=0.594;AN=2;DP=912;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:1182,0,919:8,26,5,32
chr1	233296399	.	A	AG	129.82	PASS	AC=2;AF=0.782;AN=2;DP=819;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:848,63,0:0,0,2,19
chr1	233296891	.	T	C	1043.81	PASS	AC=2;AF=0.731;AN=2;DP=3186;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3377,327,0:0,0,63,46
chr1	233296908	.	T	G	1276.03	PASS	AC=2;AF=0.731;AN=2;DP=3499;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3748,378,0:0,0,69,57
chr1	233314973	.	A	G	1079.47	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=1.588;FractionInformativeReads=1;MQ=60;MQRankSum=-1.408;QD=10;ReadPosRankSum=-0.43;SOR=0.52;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:63,45:108:99:1108,0,1801:25,38,20,25
chr1	233362930	.	G	A	2305.81	PASS	AC=1;AF=0.545;AN=2;DP=2436;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,71:146:99:1839,0,1886:43,32,40,31
chr1	233395214	.	T	A	588.62	PASS	AC=1;AF=0.705;AN=2;DP=635;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:385,0,382:3,10,0,11
chr1	233397752	.	T	C	4099.22	PASS	AC=1;AF=0.577;AN=2;DP=3865;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,92:187:99:2223,0,2378:61,34,55,37
chr1	233398636	.	A	G	336.22	PASS	AC=1;AF=0.55;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant12-variant15-variant19-variant20-variant24-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,244:6,2,3,0
chr1	233398670	.	C	A	624	PASS	AC=1;AF=0.577;AN=2;DP=524;FractionInformativeReads=1;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:336,0,387:9,1,9,0
chr1	233398713	.	C	T	1123.39	PASS	AC=1;AF=0.577;AN=2;DP=1118;FractionInformativeReads=1;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:683,0,620:16,7,17,6
chr1	233398918	.	AG	A	2132.11	PASS	AC=1;AF=0.542;AN=2;DP=583;MQ=60;set=variant2-variant6-variant8-variant12-variant15-variant19-variant20-variant24-variant25-variant29-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:1009,0,878:6,16,8,18
chr1	233398927	.	C	G	2151.69	PASS	AC=1;AF=0.577;AN=2;DP=1030;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:981,0,853:3,15,8,16
chr1	233398931	.	G	GC	2032.26	PASS	AC=1;AF=0.577;AN=2;DP=964;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:990,0,785:3,14,8,16
chr1	233398993	.	C	A	635.56	PASS	AC=1;AF=0.604;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant24-variant25-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:395,0,229:1,7,1,10
chr1	233489734	.	G	A	440.37	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant15	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:638,0,866:8,23,7,18
chr1	233508430	.	G	A	1875.92	PASS	AC=1;AF=0.52;AN=2;DP=2411;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant24-variant26-variant27-variant31-variant32-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1365,0,1827:26,30,16,26
chr1	233508564	.	G	A	3584.58	PASS	AC=1;AF=0.618;AN=2;DP=8516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,147:277:99:3584,0,3089:68,62,80,67
chr1	233509581	.	G	A	628.84	PASS	AC=1;AF=0.5;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant10-variant15-variant20-variant31-variant35	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:933,0,951:18,17,15,21
chr1	233511913	.	TAGAG	T	688.62	PASS	AC=1;AF=0.542;AN=2;DP=493;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant15-variant20-variant25-variant29-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:957,0,968:4,13,8,16
chr1	233515413	.	G	A	1436.99	PASS	AC=1;AF=0.567;AN=2;DP=3511;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,49:136:99:1165,0,2292:41,46,23,26
chr1	233518682	.	G	A	7637.01	PASS	AC=1;AF=0.636;AN=2;DP=15534;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:304,282:586:99:7302,0,7899:148,156,136,146
chr1	233518753	.	T	C	6832.5	PASS	AC=1;AF=0.636;AN=2;DP=16304;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:311,277:588:99:6732,0,7668:141,170,119,158
chr1	233518885	.	T	C	1981.53	PASS	AC=1;AF=0.679;AN=2;DP=4983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,69:146:99:1884,0,2475:28,49,21,48
chr1	233518983	.	G	GT	3228.75	PASS	AC=1;AF=0.636;AN=2;DP=5176;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,99:205:99:3764,0,6652:53,53,54,45
chr1	233518998	.	C	T	3573.12	PASS	AC=1;AF=0.636;AN=2;DP=5865;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,107:233:99:3881,0,7057:64,62,56,51
chr1	233519277	.	A	G	1315.41	PASS	AC=1;AF=0.636;AN=2;DP=2800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,32:86:99:870,0,1565:34,20,23,9
chr1	233519393	.	C	T	3412.15	PASS	AC=1;AF=0.744;AN=2;DP=10604;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,137:292:99:3289,0,3909:83,72,80,57
chr1	233519825	.	C	T	4138.08	PASS	AC=1;AF=0.636;AN=2;DP=9804;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:173,196:369:99:4980,0,4724:70,103,78,118
chr1	233520144	.	A	G	5028.39	PASS	AC=1;AF=0.636;AN=2;DP=12444;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:246,225:471:99:5652,0,6210:126,120,115,110
chr1	233520199	.	T	G	5293.46	PASS	AC=1;AF=0.636;AN=2;DP=13290;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:242,227:469:99:5571,0,6397:126,116,112,115
chr1	233520316	.	A	AG	5874.76	PASS	AC=1;AF=0.744;AN=2;DP=12869;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:237,177:414:99:5317,0,7579:104,133,79,98
chr1	233520845	.	T	C	3012.12	PASS	AC=1;AF=0.636;AN=2;DP=6361;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,126:253:99:3065,0,3557:37,90,46,80
chr1	233520909	.	T	C	990.25	PASS	AC=1;AF=0.636;AN=2;DP=2378;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1541,0,1568:7,42,4,39
chr1	233520965	.	G	A	196.99	PASS	AC=1;AF=0.636;AN=2;DP=620;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:579,0,468:0,13,1,15
chr1	233749855	.	A	G	267.33	PASS	AC=1;AF=0.802;AN=2;DP=846;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:134,0,361:9,4,5,1
chr1	233749896	.	C	CTTGGCTTTGGCT	1210.13	PASS	AC=1;AF=0.611;AN=2;DP=1370;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:1384,0,783:19,3,23,5
chr1	233785716	.	T	G	1237.87	PASS	AC=1;AF=0.636;AN=2;DP=2130;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant21-variant24-variant29-variant30-variant31-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,50:98:99:1079,0,1169:23,25,27,23
chr1	233785786	.	A	C	1088.44	PASS	AC=1;AF=0.63;AN=2;DP=2374;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,53:100:99:1253,0,1087:26,21,26,27
chr1	233802181	.	A	G	696.62	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.817;QD=11.24;ReadPosRankSum=-1.83;SOR=0.573;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:725,0,740:20,11,19,12
chr1	233802779	.	T	TTTTA	141.09	PASS	AC=2;AF=1;AN=2;DP=15;FS=0;FractionInformativeReads=0.267;MQ=60;QD=9.41;SOR=1.609;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:11:178,11,0:0,0,1,3
chr1	233807465	.	G	A	5234.97	PASS	AC=1;AF=0.619;AN=2;DP=4098;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant24-variant27-variant29-variant30-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,110:244:99:2625,0,3222:61,73,57,53
chr1	233807885	.	CTA	C	5853.99	PASS	AC=1;AF=0.619;AN=2;DP=3055;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant24-variant27-variant29-variant30-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,80:175:99:2997,0,3742:61,34,47,33
chr1	234040544	.	G	A	223.61	PASS	AC=1;AF=0.5;AN=2;DP=119;set=variant2-variant4-variant5-variant6-variant15-variant16-variant31-variant36	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:224,0,298:7,3,5,4
chr1	234040742	.	A	C	2353.78	PASS	AC=2;AF=0.656;AN=2;DP=6018;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:6845,677,0:0,0,136,90
chr1	234041422	.	G	C	3261.85	PASS	AC=2;AF=0.641;AN=2;DP=11899;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,445:445:99:13484,1332,0:0,0,231,214
chr1	234367549	.	T	C	934.26	PASS	AC=2;AF=0.679;AN=2;DP=2330;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3289,296,0:0,0,29,70
chr1	234442376	.	G	A	566.48	PASS	AC=2;AF=0.743;AN=2;DP=1006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1052,107,0:0,0,16,20
chr1	234444761	.	TA	T,TAAAAA,TAAAA,TAA	369.39	PASS	AC=2,0,0,0;AF=0.486,0.243,0.057,0.029;AN=2;DP=287;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:10:30:0,0,8,2
chr1	234454405	.	A	C	345.81	PASS	AC=2;AF=1;AN=2;DP=593;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:830,75,0:0,0,19,6
chr1	234458668	.	G	A	106.42	PASS	AC=2;AF=0.586;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:1092,89,0:0,0,26,4
chr1	234509259	.	G	C	4129.57	PASS	AC=1;AF=0.771;AN=2;DP=5359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,110:205:99:2700,0,2410:59,36,66,44
chr1	234509858	.	GT	G	187.73	PASS	AC=1;AF=0.711;AN=2;DP=580;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:335,0,205:5,5,7,8
chr1	234509864	.	T	G	141.57	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;MQ=60;set=variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:170,0,361:7,9,5,5
chr1	234509865	.	T	G	196.77	PASS	AC=1;AF=0.655;AN=2;DP=444;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:357,0,202:5,5,7,9
chr1	234510262	.	A	G	1236.07	PASS	AC=1;AF=0.683;AN=2;DP=1279;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:931,0,783:11,18,6,23
chr1	234519385	.	T	C	168.72	PASS	AC=1;AF=0.646;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant27-variant28-variant31-variant33-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,241:6,0,2,0
chr1	234519452	.	C	CT	1093.32	PASS	AC=1;AF=0.771;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:360,0,362:13,3,12,4
chr1	234527575	.	C	T	505.75	PASS	AC=2;AF=0.667;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:500,45,0:0,0,4,11
chr1	234528006	.	A	G	279.76	PASS	AC=2;AF=0.773;AN=2;DP=375;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:537,42,0:0,0,12,2
chr1	234529519	.	C	T	1312.85	PASS	AC=1;AF=0.5;AN=2;DP=1113;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant11-variant15-variant16-variant19-variant24-variant26-variant29-variant34	GT:AD:DP:GQ:PL:SB	0/1:58,45:103:99:1621,0,2108:30,28,24,21
chr1	234529540	.	G	A	1198.72	PASS	AC=1;AF=0.5;AN=2;DP=1000;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant11-variant15-variant16-variant19-variant24-variant26-variant29-variant34	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1582,0,1923:23,28,21,23
chr1	234529552	.	C	T	2426.49	PASS	AC=2;AF=0.645;AN=2;DP=2632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3934,273,0:0,0,39,51
chr1	234529570	.	G	A	2201.5	PASS	AC=2;AF=0.65;AN=2;DP=2141;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3407,235,0:0,0,29,47
chr1	234546245	.	C	T	2301.27	PASS	AC=1;AF=0.648;AN=2;DP=1587;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:620,0,862:13,20,12,14
chr1	234556630	.	C	T	639.18	PASS	AC=1;AF=0.583;AN=2;DP=601;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant18-variant19-variant26-variant27-variant28-variant31-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:447,0,604:6,16,6,12
chr1	234556646	.	T	A	496.17	PASS	AC=1;AF=0.583;AN=2;DP=441;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant18-variant19-variant26-variant27-variant28-variant31-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:415,0,569:3,15,5,11
chr1	234563060	.	T	C	1364.44	PASS	AC=1;AF=0.625;AN=2;DP=2407;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant15-variant17-variant21-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,67:124:99:1493,0,1350:31,26,36,31
chr1	234601456	.	TA	T	170.8	PASS	AC=1;AF=0.5;AN=2;DP=1146;MQ=60;set=variant-filterInvariant2-filterInvariant3-filterInvariant5-variant6-variant7-variant8-variant9-filterInvariant11-variant14-variant15-variant16-variant17-variant21-variant24-variant25-filterInvariant27-filterInvariant28-variant29-variant30-variant31-filterInvariant33-variant35-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:222,0,165:6,7,9,8
chr1	234953834	.	A	C	515.54	PASS	AC=1;AF=0.882;AN=2;DP=664;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant20-variant23-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,6:51:63:63,0,1182:19,26,0,6
chr1	235273179	.	G	A	20791.4	PASS	AC=2;AF=0.738;AN=2;DP=16126;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,541:541:99:17252,1619,0:0,0,288,253
chr1	235285740	.	C	T	176.57	PASS	AC=1;AF=0.524;AN=2;DP=940;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant10-variant12-variant13-variant15-variant16-variant21-variant23-variant25-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:619,0,494:11,12,13,14
chr1	235301496	.	CA	C	305.3	PASS	AC=1;AF=0.532;AN=2;DP=1802;set=variant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-filterInvariant17-variant18-filterInvariant19-variant20-variant24-variant25-variant26-variant27-variant30-variant31-filterInvariant33-variant37-filterInvariant38-variant39-variant40-filterInvariant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:45,20:65:99:285,0,992:17,28,7,13
chr1	235316185	.	CTT	CT,C,CTTT	115.2	PASS	AC=2,0,0;AF=0.625,0.042,0.083;AN=2;DP=113;MQ=60;set=variant5-variant9-variant10-variant12-variant15-variant16-variant24-variant28-variant31-variant32-variant41-variant44	GT:DP:GQ:SB	1/1:6:7:0,1,0,5
chr1	235350207	.	T	C	46.72	PASS	AC=1;AF=0.711;AN=2;DP=108;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant9-variant10-variant15-variant18-variant20-variant21-variant23-variant24-variant26-variant31-variant32-variant35-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,122:3,0,1,1
chr1	235357303	.	A	ATG	855.54	PASS	AC=1;AF=0.621;AN=2;DP=706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:480,0,857:16,3,8,3
chr1	235357314	.	AT	A	417.38	PASS	AC=1;AF=0.543;AN=2;DP=740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant12-variant15-variant16-variant20-variant21-variant23-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:432,0,904:22,6,11,4
chr1	235357543	.	A	G	226.33	PASS	AC=1;AF=0.543;AN=2;DP=721;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant12-variant15-variant16-variant20-variant21-variant23-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:581,0,610:3,16,7,14
chr1	235383188	.	A	G	3509.65	PASS	AC=1;AF=0.621;AN=2;DP=2648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,43:110:99:982,0,1780:25,42,16,27
chr1	235392546	.	T	C	1212.75	PASS	AC=1;AF=0.621;AN=2;DP=1187;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:684,0,523:15,4,17,7
chr1	235394541	.	A	C	589.24	PASS	AC=1;AF=0.625;AN=2;DP=570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:322,0,344:5,8,5,10
chr1	235397937	.	GCA	G	392.31	PASS	AC=1;AF=0.63;AN=2;DP=432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant26-variant28-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:369,0,288:3,6,5,6
chr1	235490391	.	CA	C	374.91	PASS	AC=1;AF=0.621;AN=2;DP=809;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:614,0,329:7,5,9,10
chr1	235492546	.	T	G	1337.18	PASS	AC=1;AF=0.621;AN=2;DP=1677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,41:77:99:894,0,917:20,16,21,20
chr1	235492972	.	T	G	337.25	PASS	AC=1;AF=0.543;AN=2;DP=579;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant10-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,6:27:99:169,0,671:12,9,2,4
chr1	235505313	.	A	AT	244.12	PASS	AC=1;AF=0.542;AN=2;DP=998;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,28:41:99:736,0,258:10,3,17,11
chr1	235506853	.	G	A	46.68	PASS	AC=1;AF=0.563;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant12-variant15-variant16-variant23-variant24-variant26-variant28-variant31-variant32-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:174,0,186:5,4,4,3
chr1	235506865	.	C	CA	89.83	PASS	AC=1;AF=0.571;AN=2;DP=165;MQ=60;set=variant2-filterInvariant3-variant5-variant10-variant12-variant15-variant16-variant23-variant26-variant28-variant31-variant32-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:80:80,0,204:4,4,2,2
chr1	235506918	.	G	C	362.91	PASS	AC=1;AF=0.635;AN=2;DP=438;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:184,0,275:6,6,4,4
chr1	235507466	.	CAA	CA,CAAAA,C,CAAA	223.45	PASS	AC=1,0,0,0;AF=0.397,0.052,0.034,0.017;AN=2;DP=1090;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant15-filterInvariant16-variant17-variant19-variant22-variant23-filterInvariant24-variant25-variant26-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:36:99:8,9,13,6
chr1	235543262	.	CA	CAA,C	140.31	PASS	AC=1,0;AF=0.397,0.103;AN=2;DP=937;set=variant2-filterInvariant4-filterInvariant5-variant6-variant7-variant8-filterInvariant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:32:99:17,3,9,3
chr1	235543476	.	TTGTGTGTGTGTGTGTGTGTGTG	T,TTGTGTGTG,TTGTGTG,TTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTG,TTGTG,TTGTGTGTGTG,TTGTGTGTGTGTG,TTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTG	1103.38	PASS	AC=0,1,0,1,0,0,0,0,0,0;AF=0.102,0.398,0.08,0.045,0.057,0.068,0.045,0.011,0.034,0.034;AN=2;DP=3568;set=Intersection	GT:DP:GQ:SB	2/4:33:99:0,1,4,28
chr1	235594182	.	A	G	420.32	PASS	AC=1;AF=0.756;AN=2;DP=1539;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:482,0,689:10,17,4,14
chr1	235594250	.	A	G	287.37	PASS	AC=1;AF=0.706;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:300,0,275:0,7,0,8
chr1	235597252	.	T	G	1843.58	PASS	AC=1;AF=0.716;AN=2;DP=2476;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:867,0,944:26,12,24,10
chr1	235598973	.	C	T	1377.32	PASS	AC=1;AF=0.722;AN=2;DP=1998;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:830,0,1026:24,13,19,11
chr1	235601958	.	G	T	394.87	PASS	AC=1;AF=0.744;AN=2;DP=1250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:334,0,570:15,2,9,5
chr1	235611525	.	A	C	144.63	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.683;QD=16.07;ReadPosRankSum=-0.573;SOR=1.402;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:173,0,110:3,0,6,0
chr1	235611535	.	CAA	CAAAAA,CA,CAAAA,C,CAAA	142.31	PASS	AC=0,1,0,0,0;AF=0.056,0.278,0.056,0.083,0.056;AN=2;DP=335;set=variant-variant2-variant3-variant4-variant6-filterInvariant9-variant11-variant15-variant16-variant22-variant24-variant27-variant28-variant31-variant37-variant39-variant43-variant44	GT:DP:GQ:SB	0/2:12:74:4,2,6,0
chr1	235612320	.	C	T	3211.2	PASS	AC=1;AF=0.756;AN=2;DP=10128;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,136:297:99:3413,0,4334:47,114,48,88
chr1	235628718	.	T	G	40.9	PASS	AC=1;AF=0.5;AN=2;DP=254;set=filterInvariant6-filterInvariant7-filterInvariant15-variant28-variant30-filterInvariant31-filterInvariant32-filterInvariant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:158,0,665:22,3,0,14
chr1	235628908	.	G	A	732.17	PASS	AC=1;AF=0.629;AN=2;DP=1646;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,34:56:99:913,0,619:13,9,20,14
chr1	235647631	.	G	T	287.58	PASS	AC=1;AF=0.613;AN=2;DP=1249;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:469,0,991:25,6,14,5
chr1	235652513	.	T	C	1237.79	PASS	AC=1;AF=0.629;AN=2;DP=2977;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,49:99:99:1261,0,1160:32,18,32,17
chr1	235657924	.	G	A	631.39	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=1.273;FractionInformativeReads=1;MQ=60;MQRankSum=-1.138;QD=14.03;ReadPosRankSum=-0.793;SOR=0.418;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:660,0,487:14,5,17,9
chr1	235667690	.	A	G	716.37	PASS	AC=1;AF=0.617;AN=2;DP=2230;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:1218,0,1268:12,33,16,29
chr1	235714862	.	A	C	325.04	PASS	AC=1;AF=0.625;AN=2;DP=797;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:512,0,362:10,1,13,6
chr1	235715053	.	GT	G	439.34	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=0;FractionInformativeReads=0.839;MQ=60;MQRankSum=-0.25;QD=3.72;ReadPosRankSum=-0.035;SOR=0.721;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:70,29:99:99:477,0,2831:32,38,13,16
chr1	235715064	.	A	T	2292.06	PASS	AC=1;AF=0.813;AN=2;DP=3527;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,66:100:99:1408,0,1130:14,20,30,36
chr1	235715523	.	A	G	826.35	PASS	AC=1;AF=0.653;AN=2;DP=5307;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,88:179:99:2155,0,2334:30,61,33,55
chr1	235715556	.	C	G	687.25	PASS	AC=1;AF=0.657;AN=2;DP=3317;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,58:109:99:1546,0,1367:13,38,19,39
chr1	235715601	.	A	G	324.22	PASS	AC=1;AF=0.657;AN=2;DP=1471;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:753,0,656:2,17,0,20
chr1	235747005	.	C	T	509.59	PASS	AC=1;AF=0.614;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant17-variant19-variant22-variant23-variant28-variant29-variant30-variant31-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,25:44:99:850,0,565:13,6,22,3
chr1	235747154	.	A	G	968.12	PASS	AC=1;AF=0.614;AN=2;DP=2436;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant17-variant19-variant22-variant23-variant28-variant29-variant30-variant31-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,111:176:99:2732,0,1376:29,36,47,64
chr1	235758570	.	G	A	150.44	PASS	AC=1;AF=0.614;AN=2;DP=606;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant17-variant19-variant22-variant23-variant28-filterInvariant29-variant30-variant31-variant34-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:589,0,391:10,6,12,12
chr1	235758911	.	A	G	193.54	PASS	AC=1;AF=0.744;AN=2;DP=566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:228,0,256:2,7,2,6
chr1	235826382	.	TA	T	990.04	PASS	AC=1;AF=0.689;AN=2;DP=1355;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:473,0,281:1,14,4,18
chr1	235827443	.	T	C	410.1	PASS	AC=1;AF=0.682;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:232,0,189:1,5,1,6
chr1	235827641	.	C	T	500.3	PASS	AC=1;AF=0.694;AN=2;DP=464;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:346,0,131:4,0,9,0
chr1	235856901	.	G	A	1034.98	PASS	AC=1;AF=0.686;AN=2;DP=1582;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:729,0,673:5,17,8,19
chr1	235860340	.	C	T	2859.75	PASS	AC=1;AF=0.708;AN=2;DP=3291;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,53:113:99:1395,0,1477:30,30,28,25
chr1	235878431	.	AGTT	AGTTGTT,A	272.04	PASS	AC=1,0;AF=0.467,0.1;AN=2;DP=389;MQ=60;set=variant2-variant4-filterInvariant6-variant9-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant31-variant32-variant37	GT:DP:GQ:SB	0/1:29:99:16,5,8,0
chr1	235887276	.	G	T	461.76	PASS	AC=1;AF=0.667;AN=2;DP=839;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:287,0,390:10,3,8,1
chr1	235896726	.	C	T	507.04	PASS	AC=1;AF=0.656;AN=2;DP=723;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:590,0,406:11,1,15,4
chr1	235910392	.	A	G	753.76	PASS	AC=1;AF=0.656;AN=2;DP=2340;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,54:99:99:1387,0,1171:30,15,35,19
chr1	235910542	.	C	T	1411.91	PASS	AC=1;AF=0.656;AN=2;DP=4230;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,90:170:99:2271,0,1842:34,46,40,50
chr1	235918688	.	CAAAAGAAAAG	CAAAAG,CAAAAGAAAAGAAAAG,CAAAAGAAAAGAAAAGAAAAG,C	627.4	PASS	AC=1,0,0,0;AF=0.442,0.337,0.023,0.012;AN=2;DP=710;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:18:99:8,1,7,2
chr1	235922228	.	T	C	527.48	PASS	AC=1;AF=0.543;AN=2;DP=767;MQ=60;set=variant6-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:518,0,756:19,8,15,3
chr1	235940450	.	C	T	1473.36	PASS	AC=1;AF=0.656;AN=2;DP=4255;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,96:176:99:2206,0,1845:42,38,49,47
chr1	235945294	.	T	C	1884.63	PASS	AC=1;AF=0.656;AN=2;DP=4946;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,107:194:99:2687,0,2170:42,45,52,55
chr1	235972435	.	T	C	1810.27	PASS	AC=1;AF=0.656;AN=2;DP=4047;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:1823,0,1729:31,39,35,38
chr1	235972867	.	T	C	1050.33	PASS	AC=1;AF=0.656;AN=2;DP=3014;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,64:114:99:1631,0,1171:27,23,34,30
chr1	236030233	.	A	C	37.54	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=21;FS=30.569;FractionInformativeReads=0.952;MQ=60;MQRankSum=-0.212;QD=1.79;ReadPosRankSum=-1.799;SOR=2.773;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:17,3:20:66:66,0,2333:0,17,3,0
chr1	236030239	.	G	C	31.52	PASS	AC=1;AF=0.5;AN=2;DP=41;MQ=60;set=filterInvariant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:22,3:25:60:60,0,2589:3,19,3,0
chr1	236030247	.	A	C	34.52	PASS	AC=1;AF=0.5;AN=2;DP=40;FractionInformativeReads=1;MQ=60;set=filterInvariant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:21,3:24:63:63,0,2498:4,17,3,0
chr1	236030248	.	G	C	34.52	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.273;QD=1.5;ReadPosRankSum=-2.346;SOR=2.206;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:21,2:23:63:63,0,2498:4,17,2,0
chr1	236142565	.	T	C	351.5	PASS	AC=1;AF=0.845;AN=2;DP=1382;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:563,0,534:5,15,4,15
chr1	236175153	.	T	C	68.44	PASS	AC=1;AF=0.545;AN=2;DP=327;FractionInformativeReads=1;set=variant2-variant6-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:97:97,0,361:9,1,3,1
chr1	236175339	.	T	C	1734.52	PASS	AC=1;AF=0.586;AN=2;DP=4423;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,76:175:99:1728,0,2385:53,46,40,36
chr1	236176990	.	T	C	153.11	PASS	AC=1;AF=0.537;AN=2;DP=976;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:554,0,679:6,19,10,14
chr1	236193145	.	G	C	625.9	PASS	AC=1;AF=0.55;AN=2;DP=1517;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:577,0,613:6,15,8,14
chr1	236201609	.	T	G	394.98	PASS	AC=1;AF=0.5;AN=2;DP=660;MQ=60;set=variant2-variant6-variant8-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:459,0,488:1,13,1,12
chr1	236305689	.	CGGGGCGCGCGGGCCGGGGCGGGGGCGCGCGGGCCGGGGCG	C,CGGGGCGCGCGGGCCGGGGCG	308.56	PASS	AC=2,0;AF=0.76,0.04;AN=2;DP=254;set=variant2-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	1/1:15:48:0,0,14,1
chr1	236368391	.	C	CT	1092.61	PASS	AC=1;AF=0.639;AN=2;DP=1408;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1471,0,1100:24,12,27,19
chr1	236368708	.	T	C	76.67	PASS	AC=2;AF=0.7;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:489,39,0:0,0,4,9
chr1	236371260	.	C	T	356.8	PASS	AC=1;AF=0.563;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:663,0,457:12,1,17,2
chr1	236371755	.	G	GT	793.27	PASS	AC=1;AF=0.65;AN=2;DP=703;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:710,0,696:13,18,11,22
chr1	236371831	.	T	C	766.33	PASS	AC=1;AF=0.65;AN=2;DP=554;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:617,0,629:13,14,12,16
chr1	236378916	.	T	C	4605.75	PASS	AC=1;AF=0.65;AN=2;DP=2919;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:164,174:338:99:4161,0,4126:93,71,95,79
chr1	236379034	.	TG	T	7386.88	PASS	AC=1;AF=0.639;AN=2;DP=6361;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:257,218:475:99:7348,0,8876:135,122,106,112
chr1	236379149	.	A	C	5169.3	PASS	AC=1;AF=0.639;AN=2;DP=6264;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:260,184:444:99:4208,0,6662:117,143,86,98
chr1	236379221	.	TACAG	T	5670.76	PASS	AC=1;AF=0.639;AN=2;DP=4831;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:194,137:331:99:5104,0,7657:83,111,57,80
chr1	236379265	.	CAAAAT	C	6112.93	PASS	AC=1;AF=0.65;AN=2;DP=2307;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:127,134:261:99:5217,0,4869:63,64,62,72
chr1	236379623	.	G	A	4163.01	PASS	AC=1;AF=0.632;AN=2;DP=5853;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:222,182:404:99:4261,0,5688:105,117,87,95
chr1	236380077	.	G	A	2262.17	PASS	AC=2;AF=0.609;AN=2;DP=5888;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:6988,660,0:0,0,90,130
chr1	236380611	.	C	T	1117.63	PASS	AC=2;AF=0.673;AN=2;DP=2567;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3592,339,0:0,0,44,69
chr1	236380653	.	ACTGTTGGTATGAATCACAGAAAGTCCT	A	447.79	PASS	AC=2;AF=0.673;AN=2;DP=1550;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-filterInvariant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1625,114,0:0,0,7,29
chr1	236380744	.	T	G	293.11	PASS	AC=2;AF=0.673;AN=2;DP=841;MQ=60;set=variant-filterInvariant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1525,114,0:0,0,15,23
chr1	236380913	.	T	C	199.29	PASS	AC=2;AF=0.674;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:702,57,0:0,0,5,14
chr1	236381349	.	C	G	1425.82	PASS	AC=2;AF=0.673;AN=2;DP=3063;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4873,464,0:0,0,58,97
chr1	236381825	.	G	C	586.05	PASS	AC=2;AF=0.673;AN=2;DP=1153;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,49:51:99:1425,118,0:1,1,22,27
chr1	236381897	.	T	A	360.54	PASS	AC=2;AF=0.673;AN=2;DP=571;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:548,47,0:0,0,3,13
chr1	236381917	.	T	A	364.57	PASS	AC=2;AF=0.673;AN=2;DP=414;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:398,30,0:0,0,1,9
chr1	236381987	.	A	G	49.73	PASS	AC=2;AF=0.688;AN=2;DP=80;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant15-variant16-variant23-variant24-variant25-variant26-variant28-variant30-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	236381989	.	C	A	49.73	PASS	AC=2;AF=0.688;AN=2;DP=76;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant15-variant16-variant23-variant24-variant25-variant26-variant28-variant30-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	236383425	.	C	A	1153.62	PASS	AC=2;AF=0.673;AN=2;DP=1782;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3319,273,0:0,0,75,16
chr1	236383623	.	A	G	3775.47	PASS	AC=2;AF=0.673;AN=2;DP=7955;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,352:352:99:10410,1053,0:0,0,159,193
chr1	236383650	.	C	G	3546.08	PASS	AC=2;AF=0.673;AN=2;DP=6524;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,280:280:99:8531,838,0:0,0,119,161
chr1	236383889	.	T	A	3240.57	PASS	AC=2;AF=0.673;AN=2;DP=6749;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,302:302:99:8976,904,0:0,0,163,139
chr1	236383910	.	G	A	3290.2	PASS	AC=2;AF=0.673;AN=2;DP=7446;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,340:340:99:10296,1019,0:0,0,185,155
chr1	236384022	.	A	ATTT	4007.26	PASS	AC=2;AF=0.673;AN=2;DP=7063;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,272:273:99:11799,819,0:1,0,136,136
chr1	236384278	.	G	C	357.23	PASS	AC=2;AF=0.673;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1581,123,0:0,0,6,35
chr1	236385116	.	C	T	300.83	PASS	AC=2;AF=0.673;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:902,69,0:0,0,20,3
chr1	236385165	.	G	C	530.34	PASS	AC=2;AF=0.673;AN=2;DP=1169;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2000,182,0:0,0,45,16
chr1	236385360	.	C	T	1042.35	PASS	AC=2;AF=0.673;AN=2;DP=1990;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,97:99:99:3037,262,0:1,1,31,66
chr1	236385379	.	A	G	637.02	PASS	AC=2;AF=0.673;AN=2;DP=1466;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,73:74:99:2436,212,0:0,1,21,52
chr1	236388346	.	G	A	2024.81	PASS	AC=1;AF=0.5;AN=2;DP=1339;MQ=60;set=variant10-variant15-variant18-variant25-variant32-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,90:199:99:2208,0,2715:56,53,48,42
chr1	236393654	.	A	G	877.81	PASS	AC=2;AF=0.989;AN=2;DP=1059;FS=0;MQRankSum=0.474;ReadPosRankSum=1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:876,83,0:0,0,8,20
chr1	236395979	.	C	CT	81.49	PASS	AC=1;AF=0.846;AN=2;DP=205;FS=0;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:77:77,0,137:6,0,4,0
chr1	236413147	.	T	C	921.94	PASS	AC=1;AF=0.658;AN=2;DP=863;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant16-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:1022,0,668:18,11,27,8
chr1	236413282	.	G	A	1103.81	PASS	AC=1;AF=0.658;AN=2;DP=1391;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant16-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,69:114:99:1688,0,1027:15,30,28,41
chr1	236413362	.	C	T	313.57	PASS	AC=1;AF=0.658;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant16-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:616,0,366:6,8,3,16
chr1	236413384	.	T	C	235.59	PASS	AC=1;AF=0.676;AN=2;DP=230;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant15-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:305,0,141:2,4,0,9
chr1	236415347	.	T	C	614.64	PASS	AC=1;AF=0.658;AN=2;DP=1429;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant16-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,28:72:99:792,0,1177:18,26,10,18
chr1	236415444	.	G	A	239.4	PASS	AC=1;AF=0.676;AN=2;DP=324;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant16-variant17-variant20-variant23-variant24-variant28-variant29-variant30-variant35-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:312,0,430:4,11,3,9
chr1	236416921	.	C	T	224.43	PASS	AC=1;AF=0.658;AN=2;DP=391;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant15-variant16-variant17-variant20-variant23-variant24-variant26-variant28-variant29-variant30-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:434,0,294:1,7,3,11
chr1	236416923	.	C	T	298.37	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant18-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:281,0,564:3,11,1,7
chr1	236433135	.	AT	A	1620.78	PASS	AC=1;AF=0.886;AN=2;DP=1930;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,33:51:99:1174,0,567:12,6,20,13
chr1	236444879	.	G	GGCCCGGCCCT	81.16	PASS	AC=1;AF=0.737;AN=2;DP=1046;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:704,0,388:5,2,12,3
chr1	236444973	.	C	T	532.06	PASS	AC=1;AF=0.596;AN=2;DP=1466;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant35-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,43:70:99:1079,0,649:16,11,21,22
chr1	236445212	.	A	G	1435.47	PASS	AC=2;AF=0.989;AN=2;DP=2772;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2055,206,0:0,0,28,41
chr1	236557771	.	G	A	1444.61	PASS	AC=2;AF=0.791;AN=2;DP=5645;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4115,411,0:0,0,60,77
chr1	236557928	.	G	A	121.25	PASS	AC=2;AF=0.798;AN=2;DP=719;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:407,33,0:0,0,1,10
chr1	236577762	.	C	T,CT	234.78	PASS	AC=0,2;AF=0.474,0.41;AN=2;DP=324;FS=0;MQ=60;set=variant7-variant9-variant4-variant3-variant14-variant15-variant-variant5-variant16-variant8-variant6-variant17-variant18-variant2-variant19-variant13-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:7:21:0,0,0,7
chr1	236646234	.	G	A	1015.65	PASS	AC=1;AF=0.5;AN=2;DP=118;MQ=60;set=variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:1044,0,926:16,18,19,18
chr1	236646366	.	G	A	1320.55	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:41,55:96:99:1349,0,983:17,24,28,27
chr1	236648008	.	GAA	G,GA	130.55	PASS	AC=0,1;AF=0.191,0.382;AN=2;DP=779;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:12:78:3,3,3,3
chr1	236686575	.	T	C	373.54	PASS	AC=2;AF=1;AN=2;DP=376;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:501,39,0:0,0,9,4
chr1	236687145	.	C	T	2112.82	PASS	AC=2;AF=0.764;AN=2;DP=2534;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,78:80:99:2254,217,0:0,2,44,34
chr1	236687580	.	CG	C	4995.51	PASS	AC=1;AF=0.667;AN=2;DP=548;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,106:209:99:2982,0,2817:49,54,48,58
chr1	236700673	.	GAGC	G	582.91	PASS	AC=2;AF=0.774;AN=2;DP=361;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,8,3
chr1	236700807	.	T	A	3112.21	PASS	AC=2;AF=0.743;AN=2;DP=2827;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2615,239,0:0,0,53,27
chr1	236700823	.	T	C	3257.13	PASS	AC=2;AF=0.743;AN=2;DP=3155;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2906,279,0:0,0,57,36
chr1	236700857	.	C	T	3095.66	PASS	AC=2;AF=0.743;AN=2;DP=3443;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3438,335,0:0,0,64,48
chr1	236700982	.	T	C	1068.3	PASS	AC=2;AF=0.743;AN=2;DP=1751;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2589,228,0:0,0,23,53
chr1	236702153	.	G	A	319.19	PASS	AC=2;AF=0.759;AN=2;DP=189;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant13-variant15-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:372,33,0:0,0,9,2
chr1	236702209	.	C	T	836.28	PASS	AC=1;AF=0.688;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:96:285,0,96:3,2,6,5
chr1	236702210	.	A	G	836.28	PASS	AC=2;AF=0.806;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:639,48,0:0,0,9,7
chr1	236702374	.	G	A,C	1469.75	PASS	AC=1,1;AF=0.686,0.057;AN=2;DP=1658;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:50:99:0,0,24,26
chr1	236702447	.	T	G	1304.07	PASS	AC=2;AF=0.735;AN=2;DP=999;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1564,105,0:0,0,16,19
chr1	236702450	.	T	C	1304.07	PASS	AC=2;AF=0.743;AN=2;DP=997;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1564,105,0:0,0,16,19
chr1	236702475	.	A	G	740.98	PASS	AC=2;AF=0.743;AN=2;DP=741;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:846,81,0:0,0,9,18
chr1	236702497	.	AGTTT	A	527.5	PASS	AC=2;AF=0.625;AN=2;DP=363;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant33-variant34-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:765,51,0:0,0,5,12
chr1	236702517	.	T	C	480.23	PASS	AC=2;AF=0.758;AN=2;DP=331;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:445,42,0:0,0,4,10
chr1	236703700	.	A	G	246.1	PASS	AC=2;AF=0.921;AN=2;DP=91;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant14-variant15-variant17-variant19-variant20-variant24-variant28-variant29-variant34-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:164,12,0:0,0,4,0
chr1	236703734	.	T	C	336.22	PASS	AC=2;AF=0.823;AN=2;DP=178;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:353,24,0:0,0,8,0
chr1	236703767	.	C	T	474.96	PASS	AC=2;AF=0.758;AN=2;DP=316;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:445,39,0:0,0,10,3
chr1	236703832	.	CG	C,CGG	1273.44	PASS	AC=2,0;AF=0.743,0.043;AN=2;DP=1273;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:56:99:0,0,39,17
chr1	236703922	.	T	C	1646.45	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=3.576;FractionInformativeReads=1;MQ=60;MQRankSum=-1.756;QD=14.57;ReadPosRankSum=0.417;SOR=1.113;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:47,66:113:99:1675,0,894:25,22,41,25
chr1	236704888	.	A	AACAGGT	367.73	PASS	AC=2;AF=0.797;AN=2;DP=230;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:36:516,36,0:0,0,7,3
chr1	236704891	.	TAAA	T	367.73	PASS	AC=2;AF=0.781;AN=2;DP=277;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:533,36,0:0,0,9,3
chr1	236704897	.	ATT	A	367.68	PASS	AC=2;AF=0.766;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:533,36,0:0,0,9,3
chr1	236705164	.	C	A	1839.58	PASS	AC=1;AF=0.667;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,51:102:99:1358,0,1205:29,22,27,24
chr1	236706352	.	A	C	2066.85	PASS	AC=2;AF=0.743;AN=2;DP=1905;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2208,210,0:0,0,24,46
chr1	236706371	.	A	G	1572.32	PASS	AC=2;AF=0.743;AN=2;DP=1483;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1801,159,0:0,0,17,36
chr1	236706425	.	G	A	679.61	PASS	AC=2;AF=0.743;AN=2;DP=558;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:609,48,0:0,0,3,13
chr1	236706671	.	T	A	1320.55	PASS	AC=2;AF=0.803;AN=2;DP=1017;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1011,75,0:0,0,22,3
chr1	236706780	.	C	T	4322.3	PASS	AC=2;AF=0.803;AN=2;DP=5279;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,126:127:99:4055,369,0:0,1,79,47
chr1	236706862	.	G	C	6504.16	PASS	AC=2;AF=0.803;AN=2;DP=8916;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,230:230:99:6843,689,0:0,0,122,108
chr1	236707007	.	C	T	2654.63	PASS	AC=1;AF=0.706;AN=2;DP=3860;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,68:139:99:1754,0,1678:29,42,23,45
chr1	236707036	.	A	T	2760.5	PASS	AC=2;AF=0.743;AN=2;DP=2778;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3931,270,0:0,0,26,64
chr1	236707045	.	C	T	2578.54	PASS	AC=2;AF=0.743;AN=2;DP=2467;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3631,247,0:0,0,25,55
chr1	236707089	.	T	A	1399.99	PASS	AC=1;AF=0.667;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:498,0,490:2,14,7,14
chr1	236707131	.	G	A	700.63	PASS	AC=1;AF=0.667;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:342,0,212:0,6,1,9
chr1	236708022	.	GT	G,GTTTT	1211.09	PASS	AC=2,0;AF=0.722,0.028;AN=2;DP=1394;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:37:99:0,0,23,14
chr1	236708037	.	T	C	1829.65	PASS	AC=1;AF=0.667;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:569,0,713:19,9,14,7
chr1	236708224	.	A	C	1969.91	PASS	AC=2;AF=0.743;AN=2;DP=3094;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3136,309,0:0,0,45,58
chr1	236708316	.	A	G	804.65	PASS	AC=2;AF=0.743;AN=2;DP=1199;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1860,141,0:0,0,15,32
chr1	236708318	.	T	C	1304.4	PASS	AC=1;AF=0.667;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:552,0,598:5,16,10,14
chr1	236708357	.	C	CCCTT	502.38	PASS	AC=2;AF=0.743;AN=2;DP=571;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:791,54,0:0,0,3,15
chr1	236711297	.	A	T	461.97	PASS	AC=2;AF=0.743;AN=2;DP=476;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:434,36,0:0,0,9,3
chr1	236711323	.	T	C	768.91	PASS	AC=2;AF=0.743;AN=2;DP=717;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:780,60,0:0,0,17,3
chr1	236711586	.	G	A	4985.18	PASS	AC=2;AF=0.743;AN=2;DP=4847;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4887,431,0:0,0,83,61
chr1	236711810	.	A	G	5253.92	PASS	AC=2;AF=0.803;AN=2;DP=5172;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,152:153:99:4743,413,0:1,0,57,95
chr1	236711882	.	G	T	2855.38	PASS	AC=2;AF=0.743;AN=2;DP=2175;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2972,208,0:0,0,27,42
chr1	236711886	.	C	T	2770.47	PASS	AC=2;AF=0.743;AN=2;DP=2121;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2923,202,0:0,0,23,39
chr1	236711951	.	T	A	1854.04	PASS	AC=2;AF=0.743;AN=2;DP=1940;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2281,154,0:0,0,24,26
chr1	236711956	.	A	C	1878.77	PASS	AC=2;AF=0.743;AN=2;DP=1974;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2277,154,0:0,0,24,27
chr1	236711981	.	C	T	1776.2	PASS	AC=2;AF=0.743;AN=2;DP=2046;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1951,180,0:0,0,31,29
chr1	236712074	.	TTTTC	T	1158.26	PASS	AC=2;AF=0.743;AN=2;DP=1556;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2795,190,0:0,0,28,35
chr1	236712857	.	C	T	5183.53	PASS	AC=1;AF=0.706;AN=2;DP=5827;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,78:191:99:1784,0,2915:62,51,43,35
chr1	236712999	.	T	G	3039.61	PASS	AC=1;AF=0.667;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,71:130:99:1845,0,1545:22,37,26,45
chr1	236713556	.	G	A	911.6	PASS	AC=2;AF=0.743;AN=2;DP=1588;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1827,162,0:0,0,28,26
chr1	236713828	.	G	A	14212.8	PASS	AC=2;AF=0.743;AN=2;DP=13689;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,512:512:99:15603,1533,0:0,0,278,234
chr1	236714064	.	A	C	8739.1	PASS	AC=2;AF=0.743;AN=2;DP=8889;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,331:332:99:10534,985,0:1,0,158,173
chr1	236714292	.	TA	TAA,TAAA,T	731.68	PASS	AC=1,0,0;AF=0.22,0.195,0.171;AN=2;DP=3144;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:55:99:4,15,9,27
chr1	236714335	.	C	T	1043.36	PASS	AC=1;AF=0.706;AN=2;DP=1113;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,23:32:99:766,0,282:3,6,7,16
chr1	236714384	.	G	A	568.27	PASS	AC=2;AF=0.743;AN=2;DP=839;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:645,54,0:0,0,10,8
chr1	236714709	.	TC	T	3309.3	PASS	AC=2;AF=0.743;AN=2;DP=2641;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:3117,235,0:0,0,58,20
chr1	236714747	.	T	C	4260.13	PASS	AC=1;AF=0.706;AN=2;DP=3807;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,63:124:99:1751,0,1684:42,19,43,20
chr1	236714916	.	T	C	10663.4	PASS	AC=2;AF=0.743;AN=2;DP=11291;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,397:397:99:11663,1188,0:0,0,202,195
chr1	236715517	.	T	C	12896.2	PASS	AC=2;AF=0.743;AN=2;DP=11801;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,390:390:99:11721,1168,0:0,0,210,180
chr1	236715710	.	G	A	4669.9	PASS	AC=1;AF=0.706;AN=2;DP=4140;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,62:110:99:1721,0,1444:11,37,19,43
chr1	236715842	.	A	G	732.47	PASS	AC=2;AF=0.743;AN=2;DP=918;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:753,63,0:0,0,9,12
chr1	236715863	.	G	A	728.59	PASS	AC=2;AF=0.743;AN=2;DP=879;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:892,63,0:0,0,10,11
chr1	236715873	.	A	C	781.77	PASS	AC=1;AF=0.667;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:214,0,460:7,6,4,5
chr1	236716370	.	C	T	283.53	PASS	AC=1;AF=0.697;AN=2;DP=363;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:132,0,400:2,9,0,4
chr1	236716686	.	G	A	368.16	PASS	AC=2;AF=0.819;AN=2;DP=678;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:753,69,0:0,0,16,7
chr1	236716741	.	G	A	1691.09	PASS	AC=2;AF=0.743;AN=2;DP=1617;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1700,144,0:0,0,36,12
chr1	236716959	.	C	T	5995.27	PASS	AC=2;AF=0.743;AN=2;DP=5663;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,183:185:99:5652,505,0:1,1,83,100
chr1	236717104	.	A	G	1708.64	PASS	AC=2;AF=0.743;AN=2;DP=1480;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1752,153,0:0,0,11,40
chr1	236717926	.	T	C	2662.22	PASS	AC=2;AF=0.743;AN=2;DP=2419;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3346,330,0:0,0,58,52
chr1	236718524	.	G	C	899.65	PASS	AC=1;AF=0.703;AN=2;DP=540;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:274,0,226:5,2,7,1
chr1	236718561	.	G	A	1607.55	PASS	AC=2;AF=0.743;AN=2;DP=1105;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1187,105,0:0,0,25,10
chr1	236718620	.	T	C	2957.33	PASS	AC=2;AF=0.743;AN=2;DP=2461;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2223,219,0:0,0,47,26
chr1	236719135	.	T	C	1537.3	PASS	AC=2;AF=0.81;AN=2;DP=2996;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2675,255,0:0,0,50,35
chr1	236719193	.	A	G	2921.25	PASS	AC=2;AF=0.743;AN=2;DP=3965;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3981,401,0:0,0,71,63
chr1	236719259	.	G	A	3016.81	PASS	AC=1;AF=0.697;AN=2;DP=3831;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,78:143:99:1921,0,1637:27,38,36,42
chr1	236719688	.	A	G	505.21	PASS	AC=2;AF=0.797;AN=2;DP=810;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,24:25:65:888,65,0:0,1,6,18
chr1	236720467	.	G	A	2475.45	PASS	AC=1;AF=0.667;AN=2;DP=281;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,60:110:99:1563,0,1232:27,23,36,24
chr1	236720761	.	T	C	1687.73	PASS	AC=2;AF=0.797;AN=2;DP=2369;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2043,183,0:0,0,22,39
chr1	236720833	.	C	T	940.72	PASS	AC=2;AF=0.743;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1239,105,0:0,0,10,25
chr1	236721610	.	G	A	1431.72	PASS	AC=2;AF=0.797;AN=2;DP=1997;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:1960,203,0:0,0,40,28
chr1	236721660	.	T	C	2301.46	PASS	AC=2;AF=0.803;AN=2;DP=3106;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2663,256,0:0,0,44,42
chr1	236721731	.	T	C	2608.11	PASS	AC=2;AF=1;AN=2;DP=4919;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3778,342,0:0,0,65,49
chr1	236722182	.	A	T	1365.98	PASS	AC=2;AF=1;AN=2;DP=1968;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2041,188,0:0,0,43,20
chr1	236722489	.	C	T	356.48	PASS	AC=2;AF=0.809;AN=2;DP=390;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:380,30,0:0,0,1,9
chr1	236723177	.	G	A	1573.66	PASS	AC=1;AF=0.706;AN=2;DP=1642;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:1274,0,1993:16,21,14,19
chr1	236723178	.	C	A	1573.66	PASS	AC=1;AF=0.706;AN=2;DP=1631;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:1274,0,1993:16,21,14,19
chr1	236724504	.	G	A	2212.22	PASS	AC=2;AF=0.797;AN=2;DP=2014;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1377,135,0:0,0,27,18
chr1	236724605	.	G	T	3264.04	PASS	AC=2;AF=0.797;AN=2;DP=3449;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,85:86:99:2420,219,0:1,0,44,41
chr1	236724715	.	T	G	1651.86	PASS	AC=2;AF=0.797;AN=2;DP=1415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1527,138,0:0,0,12,34
chr1	236724766	.	C	T	424.21	PASS	AC=2;AF=0.833;AN=2;DP=443;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:704,62,0:0,0,5,16
chr1	236729867	.	C	T	1923.74	PASS	AC=1;AF=0.706;AN=2;DP=1950;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,30:75:99:647,0,1147:27,18,17,13
chr1	236732198	.	C	A	170.14	PASS	AC=1;AF=0.75;AN=2;DP=241;set=variant-variant4-variant5-variant6-variant8-variant11-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:90:109,0,90:3,1,5,0
chr1	236732199	.	A	AC,AAC	161.1	PASS	AC=1,0;AF=0.684,0.079;AN=2;DP=219;set=variant-variant4-variant5-variant6-variant8-variant11-variant14-variant15-variant19-variant22-variant23-variant25-variant28-variant29-variant37-variant38-variant40-variant43-variant44	GT:DP:GQ:SB	0/1:10:90:4,1,5,0
chr1	236735939	.	T	C	4586.42	PASS	AC=1;AF=0.712;AN=2;DP=3792;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,77:133:99:2176,0,1496:36,20,40,37
chr1	236739416	.	C	T	1808.39	PASS	AC=2;AF=0.77;AN=2;DP=1926;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2334,224,0:0,0,50,25
chr1	236740039	.	G	C	1241.2	PASS	AC=2;AF=0.77;AN=2;DP=1275;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1584,150,0:0,0,32,18
chr1	236744424	.	A	AT	134.04	PASS	AC=2;AF=0.75;AN=2;DP=340;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:399,42,0:0,0,10,4
chr1	236744712	.	C	A	1038.2	PASS	AC=2;AF=0.743;AN=2;DP=749;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1004,84,0:0,0,8,20
chr1	236744720	.	TA	TAA,T	675.88	PASS	AC=1,0;AF=0.132,0.395;AN=2;DP=356;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant19-variant25-variant26-variant32-variant36-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:19:99:2,8,2,7
chr1	236746275	.	G	C	3565.36	PASS	AC=2;AF=0.771;AN=2;DP=3429;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3988,350,0:0,0,51,66
chr1	236746443	.	C	T	933.34	PASS	AC=2;AF=0.771;AN=2;DP=1980;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2253,225,0:0,0,26,49
chr1	236746511	.	G	A	761.47	PASS	AC=1;AF=0.6;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:351,0,368:3,10,2,10
chr1	236748433	.	G	A	4000.81	PASS	AC=1;AF=0.6;AN=2;DP=702;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,87:192:99:1956,0,2444:62,43,49,38
chr1	236748505	.	T	C	2790.74	PASS	AC=2;AF=0.771;AN=2;DP=4941;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5108,528,0:0,0,82,94
chr1	236748630	.	C	T	678.09	PASS	AC=2;AF=0.771;AN=2;DP=701;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1244,93,0:0,0,4,27
chr1	236748636	.	G	A	581.5	PASS	AC=1;AF=0.706;AN=2;DP=596;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:389,0,442:3,11,1,10
chr1	236749022	.	G	A	751.82	PASS	AC=2;AF=0.765;AN=2;DP=431;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:429,30,0:0,0,8,2
chr1	236749026	.	T	A	514.35	PASS	AC=2;AF=0.734;AN=2;DP=467;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:299,30,0:0,0,8,2
chr1	236749348	.	C	T	488.68	PASS	AC=2;AF=0.771;AN=2;DP=669;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:931,78,0:0,0,4,22
chr1	236749451	.	TA	T	178.29	PASS	AC=2;AF=0.838;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,6,5
chr1	236749626	.	C	T	1516.35	PASS	AC=1;AF=0.6;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1024,0,1862:28,21,26,17
chr1	236749649	.	T	C	3029.73	PASS	AC=1;AF=0.712;AN=2;DP=3019;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,49:108:99:1258,0,2019:35,24,28,21
chr1	236749817	.	C	T	888.68	PASS	AC=2;AF=0.771;AN=2;DP=1226;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1548,141,0:0,0,14,33
chr1	236751519	.	GA	G	641.29	PASS	AC=1;AF=0.706;AN=2;DP=655;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:316,0,234:1,6,2,7
chr1	236755170	.	G	T	1319.14	PASS	AC=2;AF=0.77;AN=2;DP=1130;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:896,87,0:0,0,16,13
chr1	236755427	.	A	G	1953.57	PASS	AC=2;AF=0.77;AN=2;DP=1274;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1212,108,0:0,0,9,27
chr1	236755690	.	G	A	156.22	PASS	AC=2;AF=0.788;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,6,0
chr1	236755814	.	G	A	1603.89	PASS	AC=2;AF=0.77;AN=2;DP=1567;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2459,169,0:0,0,33,23
chr1	236755837	.	C	T	1648.89	PASS	AC=2;AF=0.77;AN=2;DP=1665;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2459,169,0:0,0,30,25
chr1	236755937	.	TA	T	442.52	PASS	AC=2;AF=0.757;AN=2;DP=878;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:661,72,0:0,0,9,15
chr1	236757157	.	C	T	348.66	PASS	AC=1;AF=0.667;AN=2;DP=43;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:294,0,305:8,2,8,0
chr1	236757200	.	A	G	847.02	PASS	AC=2;AF=0.77;AN=2;DP=951;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1456,135,0:0,0,32,13
chr1	236757229	.	G	A	1245.84	PASS	AC=2;AF=0.77;AN=2;DP=1632;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2150,204,0:0,0,46,22
chr1	236757507	.	A	G	766.95	PASS	AC=1;AF=0.719;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,116:0,3,0,4
chr1	236758887	.	T	C	3057.73	PASS	AC=2;AF=0.77;AN=2;DP=3819;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4820,485,0:0,0,81,81
chr1	236759060	.	T	C	1040.7	PASS	AC=2;AF=0.771;AN=2;DP=955;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1002,84,0:0,0,12,16
chr1	236766135	.	A	G	696.22	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:495,0,801:22,3,15,3
chr1	236766304	.	AG	A	7120.78	PASS	AC=1;AF=0.667;AN=2;DP=683;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:152,127:279:99:3856,0,4789:86,66,79,48
chr1	236767072	.	A	G	177.07	PASS	AC=1;AF=0.821;AN=2;DP=190;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:181,0,109:3,0,5,0
chr1	236767176	.	C	G	1711.58	PASS	AC=1;AF=0.706;AN=2;DP=1455;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:1213,0,942:18,9,24,6
chr1	236767178	.	AG	A	1702.63	PASS	AC=1;AF=0.689;AN=2;DP=1687;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:1207,0,1002:18,10,25,7
chr1	236767181	.	G	GA	1072.34	PASS	AC=1;AF=0.5;AN=2;DP=176;MQ=60;set=variant2-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:933,0,1335:26,9,18,10
chr1	236767182	.	G	A	2746.86	PASS	AC=1;AF=0.563;AN=2;DP=450;MQ=60;set=variant2-variant5-variant13-variant15-variant17-variant22-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:933,0,1336:26,9,18,10
chr1	236767330	.	A	G	3615.1	PASS	AC=1;AF=0.743;AN=2;DP=4681;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,85:149:99:2344,0,1484:31,33,40,45
chr1	236767826	.	T	C	708.35	PASS	AC=1;AF=0.691;AN=2;DP=1428;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:576,0,435:4,11,7,13
chr1	236849952	.	C	T	1779.26	PASS	AC=1;AF=0.5;AN=2;DP=772;MQ=60;set=variant2-variant15-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:107,81:188:99:1948,0,2807:63,44,47,34
chr1	236881403	.	C	T	406.52	PASS	AC=1;AF=0.73;AN=2;DP=306;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:144,0,279:0,7,0,4
chr1	236882110	.	G	A	2734.81	PASS	AC=2;AF=1;AN=2;DP=3536;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2711,240,0:0,0,54,26
chr1	236882303	.	T	C	1280.54	PASS	AC=2;AF=1;AN=2;DP=3036;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2434,224,0:0,0,24,51
chr1	236883161	.	A	G	923.66	PASS	AC=2;AF=1;AN=2;DP=967;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:838,63,0:0,0,19,2
chr1	236883240	.	T	C	2765.35	PASS	AC=2;AF=1;AN=2;DP=3989;FS=0;MQ=60;MQRankSum=1.55;ReadPosRankSum=-0.547;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3262,331,0:0,0,69,42
chr1	236883421	.	C	T	3599.44	PASS	AC=2;AF=1;AN=2;DP=4963;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5079,490,0:0,0,68,96
chr1	236883564	.	G	A	1256.36	PASS	AC=2;AF=1;AN=2;DP=1437;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1235,108,0:0,0,9,27
chr1	236890781	.	A	G	632.31	PASS	AC=2;AF=1;AN=2;DP=1102;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1174,90,0:0,0,25,5
chr1	236894647	.	G	A	1666.77	PASS	AC=1;AF=0.596;AN=2;DP=3301;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,82:175:99:1798,0,2180:41,52,35,47
chr1	236897633	.	A	G	1822.56	PASS	AC=2;AF=1;AN=2;DP=2362;FS=0;MQ=60;MQRankSum=0.426;ReadPosRankSum=1.505;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1882,171,0:0,0,39,18
chr1	236899042	.	G	A	3229.74	PASS	AC=2;AF=0.571;AN=2;DP=4139;MQ=60;set=variant-variant6-variant7-variant9-variant11-variant15-variant22-variant23-variant24-variant31-variant32-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,335:335:99:10101,1000,0:0,0,156,179
chr1	236908199	.	A	C	285.64	PASS	AC=2;AF=0.667;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant24	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1868,141,0:0,0,5,42
chr1	236910863	.	T	C	56.41	PASS	AC=2;AF=0.65;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant20-variant22-variant23-variant24-variant25-variant31-variant32-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:300,21,0:0,0,7,0
chr1	236912286	.	G	A	502.07	PASS	AC=2;AF=0.942;AN=2;DP=486;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:638,48,0:0,0,15,1
chr1	236914610	.	G	C	186.1	PASS	AC=2;AF=0.798;AN=2;DP=954;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1096,90,0:0,0,25,5
chr1	236924506	.	A	G	680.85	PASS	AC=2;AF=0.872;AN=2;DP=3390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,85:86:99:2781,227,0:1,0,40,45
chr1	236924732	.	CGTGTGTGT	C,CGTGTGTGTGTGT,CGT,CGTGTGTGTGT,CGTGTGTGTGTGTGT,CGTGT	272.02	PASS	AC=0,0,2,0,0,0;AF=0.013,0.115,0.564,0.064,0.026,0.026;AN=2;DP=398;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:12:36:0,0,3,9
chr1	236924740	.	T	C	48.88	PASS	AC=2;AF=0.703;AN=2;DP=302;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:460,36,0:0,0,3,9
chr1	236926030	.	A	G	1320.86	PASS	AC=2;AF=0.697;AN=2;DP=5499;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:7,135:142:99:3890,233,0:2,5,62,73
chr1	236926366	.	C	G	3893.62	PASS	AC=2;AF=0.697;AN=2;DP=11892;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,318:318:99:9978,952,0:0,0,164,154
chr1	236926445	.	T	C	4008.94	PASS	AC=2;AF=0.763;AN=2;DP=13127;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,410:410:99:12590,1225,0:0,0,201,209
chr1	236926667	.	A	G	721.39	PASS	AC=2;AF=0.697;AN=2;DP=2387;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3466,291,0:0,0,28,69
chr1	236958532	.	G	T	347.39	PASS	AC=2;AF=0.65;AN=2;DP=1238;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,49:50:99:1628,140,0:1,0,34,15
chr1	236978992	.	T	TTCTG	580.66	PASS	AC=2;AF=0.729;AN=2;DP=1002;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1260,84,0:0,0,4,24
chr1	236987790	.	G	T	185.88	PASS	AC=2;AF=0.63;AN=2;DP=594;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1054,93,0:0,0,9,22
chr1	236988593	.	A	AT	359.72	PASS	AC=2;AF=0.63;AN=2;DP=1093;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1406,135,0:0,0,31,13
chr1	236990141	.	G	A	1547.57	PASS	AC=1;AF=0.5;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,71:159:99:1576,0,2096:37,51,29,42
chr1	237001926	.	A	G	503.99	PASS	AC=2;AF=0.63;AN=2;DP=1522;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2220,201,0:0,0,22,45
chr1	237002032	.	A	C	105.22	PASS	AC=2;AF=0.652;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:468,33,0:0,0,1,10
chr1	237013550	.	AT	A	40.69	PASS	AC=2;AF=0.769;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant15-variant21-variant23-variant24-variant27-variant29-variant30-variant32-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,3,1
chr1	237013553	.	T	A	49.73	PASS	AC=2;AF=0.75;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant13-variant15-variant21-variant23-variant24-variant27-variant29-variant30-variant32-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:12:139,12,0:0,0,3,0
chr1	237023333	.	T	C	139.14	PASS	AC=2;AF=0.671;AN=2;DP=558;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:779,66,0:0,0,6,16
chr1	237024414	.	G	T	221.33	PASS	AC=1;AF=0.5;AN=2;DP=418;set=variant2-filterInvariant3-filterInvariant10-filterInvariant15-filterInvariant16-variant19-variant22-variant24-filterInvariant25-variant28-variant29-filterInvariant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,8:33:83:83,0,1764:11,14,8,0
chr1	237024416	.	C	T	221.33	PASS	AC=1;AF=0.5;AN=2;DP=338;set=variant2-filterInvariant3-variant10-variant12-filterInvariant15-filterInvariant22-variant24-variant25-filterInvariant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,5:32:77:77,0,1822:12,15,5,0
chr1	237037998	.	CTTT	CTT,CT,C	143.27	PASS	AC=2,0,0;AF=0.609,0.016,0.047;AN=2;DP=879;set=variant2-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	1/1:27:11:1,1,18,7
chr1	237038008	.	T	A	211.25	PASS	AC=1;AF=0.5;AN=2;DP=323;MQ=60;set=variant5-variant7-variant9-variant11-filterInvariant13-variant15-variant18-variant19-variant2-variant23	GT:AD:DP:GQ:PL:SB	0/1:6,28:34:43:604,0,43:4,2,19,9
chr1	237048562	.	G	A	186.13	PASS	AC=2;AF=0.714;AN=2;DP=1198;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1217,102,0:0,0,8,26
chr1	237049879	.	C	T	722.7	PASS	AC=2;AF=0.63;AN=2;DP=1719;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2134,189,0:0,0,20,43
chr1	237054569	.	A	G	1106.71	PASS	AC=2;AF=0.63;AN=2;DP=2849;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3763,386,0:0,0,53,76
chr1	237057608	.	G	A	465.02	PASS	AC=2;AF=0.672;AN=2;DP=2469;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2617,241,0:0,0,57,24
chr1	237058744	.	C	A	2037.59	PASS	AC=2;AF=0.63;AN=2;DP=5570;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,259:260:99:8008,770,0:0,1,120,139
chr1	237058828	.	C	T	1268.69	PASS	AC=2;AF=0.638;AN=2;DP=3846;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant12-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4684,436,0:0,0,54,92
chr1	237058996	.	C	CTATT	508.33	PASS	AC=2;AF=0.729;AN=2;DP=1586;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1937,132,0:0,0,16,28
chr1	237060433	.	G	T	1046.6	PASS	AC=2;AF=0.714;AN=2;DP=3448;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3858,360,0:0,0,45,75
chr1	237060945	.	CT	C,CTT	43.73	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=1868;set=filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-variant12-filterInvariant14-filterInvariant15-variant18-variant24-filterInvariant25-variant28-variant29-filterInvariant30-filterInvariant32-filterInvariant34-filterInvariant36-filterInvariant37-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:83:85:29,40,6,8
chr1	237061056	.	A	C	574.95	PASS	AC=2;AF=0.672;AN=2;DP=1884;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2531,238,0:0,0,38,42
chr1	237061704	.	GT	G	38.84	PASS	AC=2;AF=0.76;AN=2;DP=304;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:106,12,0:0,0,2,2
chr1	237062198	.	A	C	314.8	PASS	AC=2;AF=0.729;AN=2;DP=1594;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1765,144,0:0,0,37,11
chr1	237062305	.	A	G	1903.77	PASS	AC=2;AF=0.729;AN=2;DP=5575;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:6156,593,0:0,0,119,79
chr1	237063335	.	G	C	3318.72	PASS	AC=2;AF=0.7;AN=2;DP=8656;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,277:277:99:8891,831,0:0,0,149,128
chr1	237063504	.	A	G	2950.44	PASS	AC=2;AF=0.63;AN=2;DP=7738;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,389:389:99:12320,1167,0:0,0,203,186
chr1	237063709	.	T	TA,TAA	1238.61	PASS	AC=2,0;AF=0.7,0.029;AN=2;DP=4939;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:144:99:0,0,50,94
chr1	237064456	.	G	A	1338.25	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0.741;FractionInformativeReads=1;MQ=60;MQRankSum=-0.955;QD=13.25;ReadPosRankSum=1.234;SOR=0.808;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:48,53:101:99:1366,0,1234:24,24,25,28
chr1	237064626	.	T	G	583.29	PASS	AC=2;AF=0.672;AN=2;DP=1125;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1313,117,0:0,0,16,23
chr1	237065326	.	C	T	682.02	PASS	AC=2;AF=0.688;AN=2;DP=2637;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3199,299,0:0,0,54,46
chr1	237065583	.	G	T	906.82	PASS	AC=2;AF=0.729;AN=2;DP=2477;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2293,216,0:0,0,38,35
chr1	237065605	.	T	C	466.41	PASS	AC=1;AF=0.5;AN=2;DP=676;MQ=60;set=filterInvariant4-filterInvariant11-filterInvariant13-filterInvariant15-filterInvariant16-variant21-filterInvariant26-variant28-filterInvariant31	GT:AD:DP:GQ:PL:SB	0/1:70,19:89:99:209,0,1505:28,42,19,0
chr1	237433524	.	C	T	772.66	PASS	AC=1;AF=0.5;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant15-variant19-variant23-variant26-variant31-variant39	GT:AD:DP:GQ:PL:SB	0/1:46,25:71:99:561,0,1187:25,21,14,11
chr1	237433625	.	C	T	769.9	PASS	AC=2;AF=0.595;AN=2;DP=1454;MQ=60;set=variant2-variant3-variant5-variant10-variant11-variant12-variant13-variant15-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2881,281,0:0,0,47,46
chr1	237504708	.	A	G	282.03	PASS	AC=1;AF=0.6;AN=2;DP=438;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant29-variant33-variant34-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:558,0,481:13,2,14,5
chr1	237516073	.	T	C	846.51	PASS	AC=1;AF=0.611;AN=2;DP=1353;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant22-variant28-variant29-variant33-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,35:90:99:797,0,1338:32,23,20,15
chr1	237516180	.	A	C	1080.76	PASS	AC=1;AF=0.5;AN=2;DP=1248;MQ=60;set=variant9-variant12-variant13-variant15-variant20-variant21-variant28-variant29-variant33-variant35-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,48:119:99:1122,0,1801:34,37,20,28
chr1	237519137	.	T	A	40.7	PASS	AC=1;AF=0.643;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant13-variant15-variant19-variant20-variant21-variant22-variant28-variant33-variant35-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:116,0,34:1,0,3,0
chr1	237519165	.	G	T	50.22	PASS	AC=1;AF=0.611;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant12-variant13-variant15-variant19-variant20-variant21-variant22-variant28-variant29-variant33-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:220,0,148:4,1,6,1
chr1	237551241	.	G	GTC	688.29	PASS	AC=1;AF=0.757;AN=2;DP=1240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:698,0,981:19,7,13,5
chr1	237551376	.	T	A	1216.98	PASS	AC=1;AF=0.757;AN=2;DP=4418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,71:154:99:1614,0,2164:48,35,37,34
chr1	237580606	.	G	T	376.77	PASS	AC=1;AF=0.829;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:228,0,528:0,8,1,5
chr1	237580612	.	G	C	376.77	PASS	AC=1;AF=0.829;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:234,0,461:0,6,1,5
chr1	237617757	.	C	T	1126.56	PASS	AC=1;AF=0.697;AN=2;DP=3526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,49:114:99:1159,0,1594:36,29,29,20
chr1	237619875	.	AT	ATT,A,ATTT	538.87	PASS	AC=1,0,0;AF=0.475,0.213,0.013;AN=2;DP=5142;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:144:99:48,41,34,21
chr1	237620049	.	T	C	1904.71	PASS	AC=1;AF=0.681;AN=2;DP=4545;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,69:152:99:1712,0,2163:27,56,25,44
chr1	237632285	.	A	AT	415.75	PASS	AC=1;AF=0.681;AN=2;DP=819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:279,0,679:15,4,8,1
chr1	237632595	.	T	TGTG	154.45	PASS	AC=1;AF=0.691;AN=2;DP=447;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:276,0,219:0,6,2,5
chr1	237634229	.	A	G	286.83	PASS	AC=1;AF=0.611;AN=2;DP=819;MQ=60;set=variant-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant23-variant24-variant28-variant32-variant33-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:823,0,746:19,8,23,4
chr1	237654831	.	G	T	1034.67	PASS	AC=1;AF=0.768;AN=2;DP=1289;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:556,0,714:17,8,13,5
chr1	237656185	.	A	AAGGGAGGG,AAGGGAGGGAGGG,AAGGG	607.43	PASS	AC=1,0,0;AF=0.705,0.013,0.051;AN=2;DP=870;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:26:99:19,1,6,0
chr1	237670140	.	A	G	3662.52	PASS	AC=1;AF=0.727;AN=2;DP=3285;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,45:115:99:929,0,1793:37,33,26,19
chr1	237675163	.	G	A	74.16	PASS	AC=1;AF=0.647;AN=2;DP=113;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant15-variant19-variant24-variant26-variant28-variant33-variant34-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:121,0,153:0,4,0,4
chr1	237693610	.	CA	CAA,C,CAAA	377.37	PASS	AC=1,0,0;AF=0.519,0.019,0.037;AN=2;DP=986;set=variant2-variant3-variant4-variant6-filterInvariant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant30-variant33-variant34-filterInvariant37-variant38-variant39-variant43-variant44	GT:DP:GQ:SB	0/1:40:99:16,6,10,8
chr1	237693921	.	A	G	699.9	PASS	AC=1;AF=0.872;AN=2;DP=686;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:260,0,308:1,8,2,7
chr1	237711644	.	T	C	366.49	PASS	AC=2;AF=0.965;AN=2;DP=1040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1335,116,0:0,0,30,9
chr1	237711797	.	A	G	2293.18	PASS	AC=2;AF=0.965;AN=2;DP=5194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5001,483,0:0,0,83,78
chr1	237730124	.	A	G	2581.66	PASS	AC=2;AF=0.977;AN=2;DP=3147;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3961,306,0:0,0,14,88
chr1	237730169	.	C	T	1098.23	PASS	AC=2;AF=0.989;AN=2;DP=1427;MQ=60;MQRankSum=-1.017;ReadPosRankSum=2.444;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1953,149,0:0,0,2,48
chr1	237732395	.	G	A	978.71	PASS	AC=1;AF=0.825;AN=2;DP=1061;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:692,0,807:20,2,18,2
chr1	237788862	.	T	C	274.74	PASS	AC=2;AF=0.882;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:303,21,0:0,0,7,0
chr1	237794603	.	A	G	500.3	PASS	AC=1;AF=0.842;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:320,0,211:6,1,8,6
chr1	237794913	.	ATTTTTTTTTTTTTT	ATT,A,ATTT,AT,ATTTTTTTTTTTTTTTT	486.27	PASS	AC=0,0,0,1,0;AF=0.333,0.083,0.125,0.104,0.042;AN=2;DP=465;set=variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant25-variant26-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/4:13:99:1,8,0,4
chr1	237794986	.	T	TGAA	62.42	PASS	AC=2;AF=0.722;AN=2;DP=80;FS=0;set=variant2-variant3-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	237794989	.	ACG	A	172.69	PASS	AC=2;AF=0.75;AN=2;DP=75;FS=0;set=variant2-variant3-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	237796759	.	G	C	525.33	PASS	AC=1;AF=0.56;AN=2;DP=1212;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,25:66:99:518,0,1076:25,16,15,10
chr1	237796837	.	G	A	825.57	PASS	AC=1;AF=0.578;AN=2;DP=2210;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:796,0,1180:21,23,18,18
chr1	237798450	.	G	A	326.82	PASS	AC=1;AF=0.565;AN=2;DP=478;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:481,0,536:0,14,0,13
chr1	237801770	.	T	C	5355.09	PASS	AC=2;AF=0.966;AN=2;DP=8149;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,257:257:99:8005,769,0:0,0,97,160
chr1	237802559	.	T	C	1567.79	PASS	AC=2;AF=1;AN=2;DP=2648;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2794,261,0:0,0,28,59
chr1	237813126	.	A	G	180.37	PASS	AC=1;AF=0.606;AN=2;DP=380;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:147,0,410:10,2,5,0
chr1	237814783	.	C	T	973.77	PASS	AC=1;AF=0.603;AN=2;DP=2690;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,41:104:99:1030,0,1726:21,42,15,26
chr1	237814898	.	C	A	106.89	PASS	AC=1;AF=0.613;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:234,0,156:0,5,0,6
chr1	237817514	.	GA	G	261.65	PASS	AC=1;AF=0.609;AN=2;DP=693;MQ=60;set=variant3-variant5-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,31:51:99:781,0,424:15,5,24,7
chr1	237817784	.	A	G	466.46	PASS	AC=1;AF=0.548;AN=2;DP=577;MQ=60;set=variant3-variant9-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:660,0,456:4,11,3,15
chr1	237819014	.	C	G	469.97	PASS	AC=1;AF=0.571;AN=2;DP=370;MQ=60;set=variant3-variant9-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:287,0,297:8,3,7,4
chr1	237821109	.	T	A	91.5	PASS	AC=1;AF=0.6;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant12-variant15-variant18-variant32-variant33-variant35-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:147,0,108:3,0,4,0
chr1	237823476	.	A	G	41.27	PASS	AC=1;AF=0.679;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant18-variant20-variant22-variant27-variant29-variant32-variant33-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:120,0,76:0,2,0,3
chr1	237824332	.	G	A	332.98	PASS	AC=2;AF=1;AN=2;DP=405;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:407,33,0:0,0,2,9
chr1	237831103	.	C	A	510.44	PASS	AC=2;AF=1;AN=2;DP=675;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:683,69,0:0,0,15,8
chr1	237850666	.	C	CT,CTT	594.53	PASS	AC=1,0;AF=0.347,0.181;AN=2;DP=1371;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:28:99:6,7,10,5
chr1	237862164	.	G	C	1577.79	PASS	AC=1;AF=0.774;AN=2;DP=1693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:761,0,465:13,6,19,10
chr1	237862436	.	T	C	151.77	PASS	AC=2;AF=0.919;AN=2;DP=103;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:274,21,0:0,0,2,5
chr1	237862437	.	A	G	45.21	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;QD=6.46;ReadPosRankSum=0.937;SOR=0.446;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,118:1,3,1,2
chr1	237863439	.	G	A	1416.83	PASS	AC=1;AF=0.774;AN=2;DP=1430;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:429,0,413:10,4,11,6
chr1	237863718	.	T	G	2441.52	PASS	AC=2;AF=1;AN=2;DP=3448;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2768,252,0:0,0,33,51
chr1	237865203	.	C	T	2314.22	PASS	AC=2;AF=1;AN=2;DP=2470;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1775,153,0:0,0,36,15
chr1	237872714	.	GT	G	576.49	PASS	AC=2;AF=0.989;AN=2;DP=1161;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,38:39:91:1014,91,0:1,0,24,14
chr1	237881770	.	C	T	2312.87	PASS	AC=2;AF=1;AN=2;DP=4126;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3558,374,0:0,0,60,65
chr1	237890437	.	C	T	5356.7	PASS	AC=2;AF=1;AN=2;DP=9201;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6193,623,0:0,0,99,109
chr1	237893674	.	C	T	1980.16	PASS	AC=2;AF=1;AN=2;DP=2523;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1916,197,0:0,0,28,38
chr1	237905570	.	CT	C,CTT,CCTT,CTTT	43.08	PASS	AC=0,1,0,0;AF=0.2,0.233,0.033,0.033;AN=2;DP=368;MQ=60;set=filterInvariant3-variant4-variant10-variant14-variant15-filterInvariant17-variant18-variant26-variant27-variant29-filterInvariant32-filterInvariant37-variant40-variant41-variant43	GT:DP:GQ:SB	0/2:27:99:7,6,9,5
chr1	237918506	.	T	A	1055.86	PASS	AC=1;AF=0.5;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant20-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:1084,0,1402:21,35,13,28
chr1	237923053	.	C	T	2856.52	PASS	AC=2;AF=0.744;AN=2;DP=4040;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3731,359,0:0,0,72,48
chr1	237923243	.	A	G	673.78	PASS	AC=2;AF=0.65;AN=2;DP=561;MQ=60;set=variant4-variant10-variant14-variant15-variant18-variant20-variant25-variant26-variant29-variant40	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1830,155,0:0,1,14,40
chr1	237924114	.	C	CAATGAATGGAGACATGT	79.34	PASS	AC=1;AF=0.594;AN=2;DP=109;MQ=60;set=variant2-variant3-variant10-variant11-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant30-variant32-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,294:3,0,4,0
chr1	237941781	.	T	G	153.43	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant20-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:182,0,186:5,0,5,0
chr1	237941945	.	G	A	1265.59	PASS	AC=1;AF=0.5;AN=2;DP=949;MQ=60;set=variant14-variant15-variant18-variant20-variant29-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,81:162:99:1996,0,1919:46,35,45,36
chr1	237944814	.	C	T	1108.45	PASS	AC=1;AF=0.556;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant14-variant15-variant18-variant25-variant26-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:1515,0,1565:39,29,35,29
chr1	237946964	.	T	C	2834.14	PASS	AC=1;AF=0.646;AN=2;DP=1530;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant20-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,40:76:99:881,0,894:23,13,24,16
chr1	237951226	.	A	G	891.24	PASS	AC=1;AF=0.5;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant20-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:14,28:42:99:919,0,384:11,3,25,3
chr1	237951451	.	A	G	698.95	PASS	AC=1;AF=0.694;AN=2;DP=1941;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,33:52:99:966,0,467:5,14,9,24
chr1	237951482	.	G	A	318.58	PASS	AC=1;AF=0.6;AN=2;DP=779;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,21:30:99:654,0,268:1,8,5,16
chr1	237955649	.	CTGTGTGTGTG	CTGTGTGTG,CTGTGTG,C,CTG,CTGTG	523.66	PASS	AC=0,0,0,2,0;AF=0.303,0.348,0.106,0.076,0.03;AN=2;DP=1249;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant15-variant16-variant17-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:DP:GQ:SB	4/4:37:95:0,2,9,26
chr1	237955682	.	CGTGTGTGTGTGTGTGCGTGTGTGTGT	C,CGTGTGTGTGTGTGCGTGTGTGTGT	276.34	PASS	AC=1,0;AF=0.375,0.125;AN=2;DP=107;set=variant4-variant15-variant20-variant36	GT:DP:GQ:SB	0/1:32:99:5,12,2,13
chr1	237957309	.	A	C	775.96	PASS	AC=1;AF=0.744;AN=2;DP=2717;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,46:72:99:1090,0,494:13,13,20,26
chr1	237964934	.	A	G	340.43	PASS	AC=2;AF=0.716;AN=2;DP=520;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:810,57,0:0,0,18,1
chr1	237994957	.	G	A	965.77	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=2;FractionInformativeReads=1;MQ=60;MQRankSum=1.554;QD=11.23;ReadPosRankSum=0.381;SOR=1.047;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:994,0,1360:16,34,9,27
chr1	237996003	.	C	A	1710.16	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=3.122;FractionInformativeReads=1;MQ=60;MQRankSum=-0.479;QD=12.67;ReadPosRankSum=-1.102;SOR=0.468;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:62,73:135:99:1738,0,1482:24,38,33,40
chr1	237996275	.	C	T	1369.69	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=2.628;FractionInformativeReads=1;MQ=60;MQRankSum=-0.511;QD=12.45;ReadPosRankSum=-0.553;SOR=0.446;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1398,0,1614:39,17,34,20
chr1	237996581	.	GA	GAA,G,GAAA	650.32	PASS	AC=1,0,0;AF=0.539,0.066,0.013;AN=2;DP=1610;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:45:99:5,18,7,15
chr1	237996661	.	C	G	215.04	PASS	AC=1;AF=0.615;AN=2;DP=401;set=variant2-variant3-variant4-variant5-variant6-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant35-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,21:28:99:446,0,144:7,0,2,19
chr1	237996834	.	G	GAAAC	3913.8	PASS	AC=1;AF=0.579;AN=2;DP=1972;MQ=60;set=variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant27-variant29-variant31-variant32-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,50:111:99:1961,0,3406:36,25,31,19
chr1	237997087	.	A	G	5076.62	PASS	AC=1;AF=0.574;AN=2;DP=11091;MQ=60;set=variant2-variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:279,201:480:99:4593,0,7108:147,132,104,97
chr1	238045590	.	C	T	84.96	PASS	AC=1;AF=0.609;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant19-variant21-variant25-variant26-variant29-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:157,0,143:4,0,4,1
chr1	238045995	.	T	C	1515.58	PASS	AC=1;AF=0.529;AN=2;DP=1748;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant14-variant15-variant19-variant20-variant25-variant26-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,60:117:99:1477,0,1592:38,19,33,27
chr1	238046253	.	T	C	124.68	PASS	AC=1;AF=0.643;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:222,0,363:1,9,0,6
chr1	238048325	.	A	G	1300.54	PASS	AC=2;AF=0.895;AN=2;DP=2388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2372,228,0:0,0,36,40
chr1	238051933	.	C	T	193.2	PASS	AC=1;AF=0.643;AN=2;DP=659;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:294,0,647:6,16,2,9
chr1	238053129	.	A	C	168.33	PASS	AC=1;AF=0.5;AN=2;DP=931;set=variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant10-variant11-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant21-filterInvariant22-filterInvariant23-filterInvariant26-filterInvariant27-variant29-variant30-variant31-variant32-filterInvariant35-filterInvariant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:27,10:37:59:59,0,398:5,22,10,0
chr1	238053524	.	T	C	162.61	PASS	AC=1;AF=0.596;AN=2;DP=500;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant25-variant26-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:457,0,468:3,9,4,11
chr1	238107361	.	C	T	54.21	PASS	AC=1;AF=0.784;AN=2;DP=522;FS=0;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:178,0,196:5,4,4,2
chr1	238108482	.	C	T	3102.8	PASS	AC=1;AF=0.756;AN=2;DP=9082;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,141:301:99:3228,0,3771:87,73,76,65
chr1	240077246	.	C	G	1066.72	PASS	AC=1;AF=0.5;AN=2;DP=279;MQ=60;set=variant15-variant19-variant22-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,42:79:99:1095,0,1062:17,20,18,24
chr1	240254828	.	T	C	335.77	PASS	AC=2;AF=0.872;AN=2;DP=302;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:144,15,0:0,0,3,2
chr1	240254874	.	T	C	644.47	PASS	AC=2;AF=0.85;AN=2;DP=706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:529,48,0:0,0,12,4
chr1	240255203	.	G	T	700.52	PASS	AC=2;AF=0.691;AN=2;DP=973;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:683,66,0:0,0,10,12
chr1	240255564	.	GA	G	55.08	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=62;FS=30.696;FractionInformativeReads=0.984;MQ=60;MQRankSum=1.334;QD=0.89;ReadPosRankSum=-2.27;SOR=3.228;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:51,10:61:92:92,0,1056:35,16,1,9
chr1	240255568	.	GGGC	G	1502.47	PASS	AC=1;AF=0.821;AN=2;DP=2516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,37:49:99:780,0,163:1,11,31,6
chr1	240255569	.	GGC	G	58.09	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=62;FS=32.441;FractionInformativeReads=0.935;MQ=60;MQRankSum=-1.739;QD=0.94;ReadPosRankSum=-1.842;SOR=3.226;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:48,10:58:95:95,0,1023:34,14,1,9
chr1	240256822	.	C	A	2691.05	PASS	AC=2;AF=0.691;AN=2;DP=4287;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,154:155:99:5119,417,0:0,1,50,104
chr1	240286495	.	G	A	1826.68	PASS	AC=1;AF=0.5;AN=2;DP=160;FS=0.607;FractionInformativeReads=1;MQ=60;MQRankSum=-0.343;QD=11.42;ReadPosRankSum=-0.808;SOR=0.792;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:87,73:160:99:1855,0,2270:54,33,47,26
chr1	240286716	.	G	A	843.21	PASS	AC=1;AF=0.5;AN=2;DP=512;MQ=60;set=variant5-variant9-variant15-variant19-variant20-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:61,39:100:99:1017,0,1783:17,44,11,28
chr1	240341119	.	A	G	336.22	PASS	AC=1;AF=0.556;AN=2;DP=125;MQ=60;set=variant2-variant3-variant15-variant18-variant26-variant31-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:439,0,236:7,1,11,1
chr1	240341164	.	C	T	695.36	PASS	AC=1;AF=0.55;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant15-variant18-variant26-variant30-variant31-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:578,0,489:14,3,16,5
chr1	240341268	.	A	G	3531.54	PASS	AC=1;AF=0.545;AN=2;DP=1408;MQ=60;set=variant2-variant3-variant15-variant18-variant26-variant30-variant31-variant34-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,90:167:99:2292,0,1783:44,33,53,37
chr1	240341423	.	G	T	1860.02	PASS	AC=1;AF=0.545;AN=2;DP=731;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant15-variant18-variant26-variant30-variant31-variant34-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1272,0,1076:14,28,11,34
chr1	240343621	.	A	G	750.77	PASS	AC=1;AF=0.545;AN=2;DP=325;MQ=60;set=variant2-variant3-variant15-variant18-variant26-variant30-variant31-variant34-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:455,0,408:3,11,3,13
chr1	240351628	.	T	C	2795.91	PASS	AC=2;AF=0.639;AN=2;DP=7455;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:7622,745,0:0,0,104,145
chr1	240370629	.	C	G	3521.42	PASS	AC=2;AF=0.596;AN=2;DP=7076;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:8628,786,0:0,0,131,131
chr1	240371106	.	C	T	132.41	PASS	AC=2;AF=0.688;AN=2;DP=90;set=variant3-variant5-variant9-variant10-variant15-variant17-variant22-variant37	GT:AD:DP:GQ:PL:SB	1/1:1,11:12:2:278,2,0:0,1,1,10
chr1	240601269	.	A	G	733.76	PASS	AC=1;AF=0.953;AN=2;DP=1253;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:482,0,499:13,5,13,3
chr1	240635491	.	G	C	381.9	PASS	AC=2;AF=0.988;AN=2;DP=273;FS=0;MQ=60;MQRankSum=0.358;ReadPosRankSum=0.358;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:396,33,0:0,0,9,2
chr1	240643167	.	A	C	428.67	PASS	AC=1;AF=0.621;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:433,0,205:6,2,10,3
chr1	240643184	.	C	T	496.03	PASS	AC=1;AF=0.638;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:475,0,235:7,2,11,4
chr1	240643435	.	A	T,ACCCTTGGGAGGTGTTATCTCAAAATCCTTCTCCAAGGTGAAACCATT	849.88	PASS	AC=1,0;AF=0.565,0.065;AN=2;DP=784;set=variant8-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:36:99:6,15,4,11
chr1	240652947	.	A	G	5709.78	PASS	AC=1;AF=0.833;AN=2;DP=5514;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,75:162:99:1919,0,2370:58,29,52,23
chr1	240775103	.	C	T	656.95	PASS	AC=1;AF=0.837;AN=2;DP=1378;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:559,0,446:13,6,14,7
chr1	240975213	.	T	C	2405.74	PASS	AC=2;AF=0.708;AN=2;DP=2239;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2148,203,0:0,0,42,26
chr1	240975435	.	C	T	675.73	PASS	AC=2;AF=0.708;AN=2;DP=917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1230,96,0:0,0,4,28
chr1	240977964	.	G	T	1021.91	PASS	AC=2;AF=0.78;AN=2;DP=1056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1069,105,0:0,0,23,12
chr1	240979803	.	G	A	151.77	PASS	AC=2;AF=0.833;AN=2;DP=392;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:397,33,0:0,0,1,10
chr1	241100122	.	G	T	402.73	PASS	AC=1;AF=0.7;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:217,0,108:1,2,1,6
chr1	241146322	.	A	G	1639.37	PASS	AC=2;AF=0.635;AN=2;DP=1321;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant31-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1885,186,0:0,0,35,27
chr1	241519098	.	T	A	1858.54	PASS	AC=2;AF=0.989;AN=2;DP=3363;FS=0;MQ=60;MQRankSum=0.259;ReadPosRankSum=-2.058;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:2968,301,0:0,0,44,57
chr1	241520188	.	T	C	1896.62	PASS	AC=2;AF=0.989;AN=2;DP=2917;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2284,239,0:0,0,49,31
chr1	241663902	.	TGAGA	TGAGAGA,TGAGAGAGA,TGAGAGAGAGA,TGA,TGAGAGAGAGAGAGAGAGA,TGAGAGAGAGAGA,TGAGAGAGAGAGAGAGA,TGAGAGAGAGAGAGA,T	991.71	PASS	AC=0,1,0,0,0,0,0,0,0;AF=0.148,0.284,0.159,0.023,0.068,0.034,0.034,0.011,0.011;AN=2;DP=4382;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:67:99:6,24,11,26
chr1	241667244	.	G	T	1989.07	PASS	AC=2;AF=0.756;AN=2;DP=1664;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1308,118,0:0,0,31,9
chr1	241667523	.	C	T	483.96	PASS	AC=1;AF=0.5;AN=2;DP=171;MQ=60;set=variant15-variant16-variant23-variant24	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:512,0,345:4,8,6,13
chr1	241676758	.	C	T	688.9	PASS	AC=1;AF=0.604;AN=2;DP=1242;MQ=60;set=variant-variant6-variant8-variant9-variant11-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:835,0,728:19,9,23,6
chr1	241677035	.	T	A	695.6	PASS	AC=1;AF=0.5;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant23-variant24	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:724,0,973:11,25,9,19
chr1	241695792	.	T	C	1155.11	PASS	AC=1;AF=0.5;AN=2;DP=321;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant23-variant24	GT:AD:DP:GQ:PL:SB	0/1:44,53:97:99:1183,0,948:19,25,24,29
chr1	241695845	.	C	G	709.9	PASS	AC=1;AF=0.5;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant23-variant24	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:738,0,522:7,14,8,19
chr1	241729614	.	T	G	412.07	PASS	AC=2;AF=0.927;AN=2;DP=440;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:819,60,0:0,0,19,1
chr1	241729687	.	AAGCTCCCTGGTCAC	A	350.81	PASS	AC=1;AF=0.524;AN=2;DP=886;MQ=60;set=variant-variant3-variant7-variant12-variant15-variant16-variant18-variant20-variant21-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,22:60:99:789,0,1509:21,17,15,7
chr1	241730054	.	C	T	845.08	PASS	AC=1;AF=0.619;AN=2;DP=1565;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,34:90:99:846,0,1483:23,33,12,22
chr1	241730153	.	G	T	602.96	PASS	AC=2;AF=0.898;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:837,84,0:0,0,10,18
chr1	241755348	.	C	T	1643.68	PASS	AC=1;AF=0.526;AN=2;DP=2228;MQ=60;set=variant-variant3-variant7-variant15-variant16-variant18-variant20-variant21-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,61:118:99:1545,0,1457:32,25,32,29
chr1	241756057	.	C	CATCT,CATCTATCT	140.9	PASS	AC=2,0;AF=0.7,0.28;AN=2;DP=548;FS=0;MQ=60;MQRankSum=0.322;ReadPosRankSum=0.322;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant21-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	1/1:4:9:0,0,1,3
chr1	241757409	.	T	TA	5442.47	PASS	AC=1;AF=0.533;AN=2;DP=4509;MQ=60;set=variant-variant2-variant4-variant10-variant14-variant15-variant22-variant23-variant24-variant26-variant31-variant33-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:209,177:386:99:5424,0,6617:86,123,74,103
chr1	241761349	.	T	C	279.21	PASS	AC=1;AF=0.526;AN=2;DP=562;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant15-variant16-variant18-variant20-variant21-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:484,0,742:4,20,6,14
chr1	241767930	.	G	A	1494.71	PASS	AC=2;AF=0.966;AN=2;DP=4390;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4024,410,0:0,0,58,79
chr1	241792562	.	A	G	4475.23	PASS	AC=1;AF=0.5;AN=2;DP=4360;MQ=60;set=variant2-variant11-variant13-variant15-variant16-variant18-variant23-variant28-variant31-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:296,242:538:99:5890,0,7558:140,156,117,125
chr1	241793326	.	A	G	9112.89	PASS	AC=1;AF=0.577;AN=2;DP=3772;MQ=60;set=variant4-variant5-variant10-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant31-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:173,174:347:99:4279,0,4210:83,90,81,93
chr1	241794056	.	C	A	4423.55	PASS	AC=1;AF=0.606;AN=2;DP=8218;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:175,151:326:99:3852,0,4988:67,108,70,81
chr1	241794231	.	C	T	2863.38	PASS	AC=1;AF=0.6;AN=2;DP=8617;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,146:317:99:3776,0,4629:86,85,72,74
chr1	241795123	.	G	A	573.22	PASS	AC=1;AF=0.5;AN=2;DP=689;MQ=60;set=variant2-variant11-variant13-variant15-variant16-variant18-variant23-variant28-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1118,0,1406:26,24,24,17
chr1	241796284	.	A	G	1717.46	PASS	AC=2;AF=0.711;AN=2;DP=5197;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:5143,450,0:0,0,79,71
chr1	241796443	.	T	C	4618.69	PASS	AC=2;AF=0.607;AN=2;DP=6016;MQ=60;set=variant2-variant4-variant5-variant10-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant31-variant36-variant37	GT:AD:DP:GQ:PL:SB	1/1:0,492:492:99:14472,1471,0:0,0,262,230
chr1	241798631	.	C	T	2095.45	PASS	AC=2;AF=0.684;AN=2;DP=3739;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant28-variant31-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,195:196:99:6150,542,0:0,1,108,87
chr1	241803636	.	T	C	464.99	PASS	AC=2;AF=0.703;AN=2;DP=1406;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1702,123,0:0,0,21,20
chr1	241803658	.	A	G	504.26	PASS	AC=2;AF=0.716;AN=2;DP=1406;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1697,120,0:0,0,19,19
chr1	241803731	.	AC	A	62.96	PASS	AC=2;AF=0.714;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:601,57,0:0,0,8,11
chr1	241838057	.	C	T	3417.3	PASS	AC=2;AF=0.759;AN=2;DP=1694;FractionInformativeReads=1;set=variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2903,205,0:0,0,24,42
chr1	241838065	.	T	C	3334.16	PASS	AC=2;AF=0.742;AN=2;DP=1700;FractionInformativeReads=1;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2736,190,0:0,0,20,41
chr1	241847018	.	C	T,G	121.7	PASS	AC=2,0;AF=0.743,0.043;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:DP:GQ:SB	1/1:17:51:0,0,3,14
chr1	241850657	.	T	C	594.21	PASS	AC=2;AF=0.583;AN=2;DP=125;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant28-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:622,48,0:0,0,14,2
chr1	241875326	.	T	C	450.02	PASS	AC=1;AF=0.545;AN=2;DP=757;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant20-variant21-variant22-variant23-variant26-variant27-variant30-variant31-variant32-variant34-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:512,0,499:1,13,3,15
chr1	241907817	.	T	C	714.63	PASS	AC=1;AF=0.645;AN=2;DP=2524;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:997,0,1038:23,19,22,21
chr1	241907948	.	T	C	134.64	PASS	AC=1;AF=0.542;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant21-variant23-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:304,0,396:2,11,5,8
chr1	241920562	.	C	T	553.09	PASS	AC=1;AF=0.542;AN=2;DP=574;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant21-variant23-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:684,0,669:17,6,19,8
chr1	241929542	.	G	A	976.5	PASS	AC=1;AF=0.583;AN=2;DP=1550;MQ=60;set=variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant21-variant23-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:67,64:131:99:1521,0,1523:32,35,35,29
chr1	241935987	.	AC	A	424.37	PASS	AC=1;AF=0.583;AN=2;DP=448;set=variant-variant2-variant3-variant8-variant12-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant32-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:702,0,461:14,0,19,2
chr1	241936055	.	A	G	955.09	PASS	AC=1;AF=0.583;AN=2;DP=1035;set=variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant21-variant23-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1119,0,1195:29,16,28,14
chr1	241946766	.	A	C	723.35	PASS	AC=1;AF=0.763;AN=2;DP=2259;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:955,0,868:14,22,13,23
chr1	241951034	.	C	T	140.9	PASS	AC=2;AF=0.654;AN=2;DP=516;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:814,69,0:0,0,18,5
chr1	241951106	.	A	G	1323.61	PASS	AC=2;AF=0.648;AN=2;DP=2314;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3336,323,0:0,0,71,37
chr1	241951329	.	C	T	534.97	PASS	AC=1;AF=0.583;AN=2;DP=547;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant21-variant23-variant31-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:951,0,609:6,17,4,25
chr1	241958401	.	C	CTTGT	1214.25	PASS	AC=1;AF=0.583;AN=2;DP=695;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant12-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant32-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:824,0,2908:22,9,17,2
chr1	241958409	.	C	T	1324.15	PASS	AC=1;AF=0.583;AN=2;DP=841;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant12-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant32-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:864,0,2924:22,12,20,4
chr1	242011406	.	T	C	106.77	PASS	AC=2;AF=0.797;AN=2;DP=537;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:849,63,0:0,0,17,4
chr1	242011534	.	A	G	654.11	PASS	AC=1;AF=0.694;AN=2;DP=2738;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:1000,0,1419:29,29,20,23
chr1	242012033	.	G	A	652.91	PASS	AC=1;AF=0.7;AN=2;DP=1518;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:476,0,903:22,6,11,4
chr1	242012149	.	C	T	2955.56	PASS	AC=1;AF=0.633;AN=2;DP=5639;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,101:203:99:2696,0,2612:62,40,69,32
chr1	242012554	.	C	T	85.66	PASS	AC=1;AF=0.661;AN=2;DP=613;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:218,0,226:4,6,5,6
chr1	242012660	.	C	T	46.75	PASS	AC=1;AF=0.625;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant24-variant25-variant28-variant31-variant33-variant36	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:0,1,0,2
chr1	242013592	.	A	AC	314.93	PASS	AC=1;AF=0.661;AN=2;DP=1464;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,43:72:99:1274,0,723:19,10,30,13
chr1	242015820	.	A	G	115.66	PASS	AC=1;AF=0.697;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:273,0,189:2,5,2,7
chr1	242016590	.	C	T	216.18	PASS	AC=1;AF=0.577;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant15-variant21-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant36	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:257,0,300:8,1,7,3
chr1	242020495	.	C	T	689.09	PASS	AC=1;AF=0.681;AN=2;DP=1192;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:343,0,600:16,2,9,2
chr1	242030151	.	A	G	1117.66	PASS	AC=1;AF=0.686;AN=2;DP=3334;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,71:136:99:1806,0,1598:41,24,46,25
chr1	242035673	.	A	G	163.22	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant15-variant17-variant23-variant24-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:21:208,0,21:0,1,1,5
chr1	242042301	.	G	A	2153.86	PASS	AC=2;AF=0.672;AN=2;DP=4462;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5640,572,0:0,0,87,104
chr1	242042545	.	A	G	1472.27	PASS	AC=2;AF=0.671;AN=2;DP=4694;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,160:161:99:4745,445,0:1,0,83,77
chr1	242042690	.	A	G	1751.8	PASS	AC=2;AF=0.805;AN=2;DP=2002;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2012,183,0:0,0,17,44
chr1	242045275	.	C	T	4356.29	PASS	AC=2;AF=0.989;AN=2;DP=5320;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4095,434,0:0,0,72,73
chr1	242048514	.	G	GTAAA,GTAAATAAA,GTAAATAAATAAA	148.84	PASS	AC=0,2,0;AF=0.362,0.534,0.052;AN=2;DP=124;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:6:18:0,0,5,1
chr1	242048674	.	C	T	2471.82	PASS	AC=1;AF=0.55;AN=2;DP=1508;MQ=60;set=variant3-variant11-variant15-variant20-variant22-variant24-variant26-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,78:162:99:1611,0,1828:44,40,41,37
chr1	242052685	.	C	G	305.67	PASS	AC=1;AF=0.55;AN=2;DP=286;MQ=60;set=variant3-variant11-variant15-variant20-variant22-variant24-variant26-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:429,0,668:17,5,11,2
chr1	242053030	.	AT	A	2026.74	PASS	AC=1;AF=0.55;AN=2;DP=1673;MQ=60;set=variant3-variant11-variant15-variant20-variant22-variant24-variant26-variant31-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,84:167:99:2377,0,2278:31,52,34,50
chr1	242053042	.	A	G	6341.63	PASS	AC=1;AF=0.872;AN=2;DP=6856;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,77:164:99:2083,0,2367:37,50,29,48
chr1	242120870	.	C	G	34.68	PASS	AC=1;AF=0.652;AN=2;DP=191;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:138,0,233:6,3,4,0
chr1	242120914	.	G	A	285.1	PASS	AC=1;AF=0.703;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:525,0,214:6,1,13,4
chr1	242120953	.	T	C	394.52	PASS	AC=1;AF=0.611;AN=2;DP=992;MQ=60;set=variant-variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:707,0,612:16,7,18,6
chr1	242121011	.	ATAAG	A	1749.1	PASS	AC=1;AF=0.66;AN=2;DP=2367;MQ=60;set=variant-variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,53:117:99:2033,0,2528:34,30,31,22
chr1	242121052	.	C	G	2864.97	PASS	AC=1;AF=0.66;AN=2;DP=3162;MQ=60;set=variant-variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,79:166:99:3043,0,3434:46,41,44,35
chr1	242121061	.	C	T	2993.91	PASS	AC=1;AF=0.66;AN=2;DP=3439;MQ=60;set=variant-variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,84:177:99:3131,0,3531:47,46,46,38
chr1	242121377	.	T	G	3235.72	PASS	AC=1;AF=0.55;AN=2;DP=2750;MQ=60;set=variant2-variant5-variant7-variant15-variant17-variant23-variant30-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:147,174:321:99:4089,0,3272:84,63,96,78
chr1	242121540	.	G	A	1839.03	PASS	AC=1;AF=0.66;AN=2;DP=5145;MQ=60;set=variant-variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,119:227:99:3281,0,2936:51,57,55,64
chr1	242121796	.	G	T	1335.63	PASS	AC=1;AF=0.66;AN=2;DP=3754;MQ=60;set=variant-variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,81:169:99:2292,0,2439:46,42,44,37
chr1	242159220	.	CA	CAA,C	388.17	PASS	AC=1,0;AF=0.556,0.028;AN=2;DP=895;MQ=60;set=variant-filterInvariant2-variant5-variant9-variant12-variant14-variant15-variant18-variant23-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:46:99:20,14,9,3
chr1	242161553	.	G	A	148.72	PASS	AC=2;AF=0.976;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:311,27,0:0,0,7,2
chr1	242161619	.	C	A	509.23	PASS	AC=2;AF=0.966;AN=2;DP=931;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:633,60,0:0,0,13,7
chr1	242161679	.	G	A	1585.37	PASS	AC=2;AF=0.966;AN=2;DP=2139;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1407,144,0:0,0,27,21
chr1	242162525	.	G	A	447.91	PASS	AC=1;AF=0.717;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:143,0,157:2,4,2,3
chr1	242253024	.	T	C	3093.28	PASS	AC=1;AF=0.6;AN=2;DP=5763;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,157:282:99:4121,0,3012:56,69,77,80
chr1	242264102	.	A	G	616.61	PASS	AC=1;AF=0.531;AN=2;DP=1101;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant11-variant14-variant15-variant17-variant18-variant25-variant29-variant34-variant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:40,34:74:99:617,0,880:18,22,16,18
chr1	242287684	.	T	C	322.66	PASS	AC=1;AF=0.5;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant11-variant15-variant34-variant39	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:336,0,345:9,2,9,2
chr1	242511556	.	AACAAAG	A	2961.67	PASS	AC=2;AF=0.837;AN=2;DP=3857;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:3510,220,0:1,0,31,51
chr1	242687390	.	G	A	1006.94	PASS	AC=1;AF=0.636;AN=2;DP=4792;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,95:176:99:2327,0,1879:43,38,54,41
chr1	243217374	.	A	G	147.54	PASS	AC=2;AF=0.895;AN=2;DP=135;FractionInformativeReads=1;set=variant-variant3-filterInvariant4-filterInvariant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant32-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:173,12,0:0,0,4,0
chr1	243217395	.	A	G	227.21	PASS	AC=2;AF=0.808;AN=2;DP=380;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-filterInvariant29-variant31-variant32-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:382,27,0:0,0,8,1
chr1	243218882	.	G	A	113.43	PASS	AC=2;AF=0.55;AN=2;DP=188;FractionInformativeReads=1;set=variant6-variant9-variant10-variant11-variant15-variant17-variant23-variant24-variant27-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1108,111,0:0,0,16,21
chr1	243219400	.	T	C	251.83	PASS	AC=2;AF=0.768;AN=2;DP=342;FractionInformativeReads=1;set=variant-variant3-variant4-filterInvariant6-variant7-variant8-variant9-filterInvariant11-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-filterInvariant24-variant25-variant26-variant29-variant31-filterInvariant32-variant33-variant36-filterInvariant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:248,21,0:0,0,6,1
chr1	243219965	.	G	C	61.85	PASS	AC=1;AF=0.5;AN=2;DP=2407;set=filterInvariant3-filterInvariant4-filterInvariant5-variant8-variant9-variant10-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant26-filterInvariant27-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-filterInvariant35-variant38-filterInvariant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,16:78:99:161,0,1896:27,35,8,8
chr1	243220561	.	A	G	40.3	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=29.5;QD=20.15;SOR=2.303;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:69,6,0:0,0,0,2
chr1	243291379	.	T	G	164.17	PASS	AC=1;AF=0.538;AN=2;DP=136;FractionInformativeReads=1;set=variant6-variant9-variant10-variant11-variant15-variant17-variant19-variant23-variant24-variant25-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,13:15:4:480,0,4:1,1,12,1
chr1	243299436	.	T	A	51.04	PASS	AC=1;AF=0.571;AN=2;DP=96;FractionInformativeReads=1;set=filterInvariant6-filterInvariant10-variant11-variant15-variant24-filterInvariant25-variant27	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:140,0,267:6,7,3,5
chr1	243329049	.	G	A	1578.1	PASS	AC=1;AF=0.5;AN=2;DP=9905;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant8-variant9-filterInvariant10-variant11-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant18-filterInvariant20-variant21-variant23-filterInvariant24-variant26-filterInvariant27-variant28-variant31-variant32-variant33-variant34-variant35-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:251,43:294:99:266,0,6845:134,117,22,21
chr1	243465061	.	G	A	30.69	PASS	AC=2;AF=0.974;AN=2;DP=208;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:86,9,0:0,0,3,0
chr1	243578812	.	G	A	538.6	PASS	AC=2;AF=0.688;AN=2;DP=273;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant15-variant22-variant23-variant24-variant27-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1840,170,0:0,0,39,18
chr1	243651806	.	C	T	233.53	PASS	AC=1;AF=0.583;AN=2;DP=209;MQ=60;set=variant3-variant6-variant8-variant15-variant16-variant22-variant24-variant27-variant29-variant35-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:424,0,399:3,11,5,11
chr1	243666694	.	GCT	G	1102.25	PASS	AC=1;AF=0.575;AN=2;DP=1047;MQ=60;set=variant3-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant27-variant29-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,36:70:99:1409,0,1309:8,26,15,21
chr1	243667216	.	C	T	6436.11	PASS	AC=1;AF=0.583;AN=2;DP=4882;set=variant3-variant8-variant11-variant15-variant16-variant22-variant24-variant27-variant29-variant35-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:231,226:457:99:5801,0,5745:104,127,98,128
chr1	243667900	.	T	G	264.48	PASS	AC=1;AF=0.571;AN=2;DP=615;set=variant3-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant27-variant29-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:766,0,716:5,18,6,20
chr1	243736210	.	CT	CTT,C	61.16	PASS	AC=0,1;AF=0.063,0.438;AN=2;DP=781;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant29-filterInvariant31-variant33-variant35-filterInvariant36-variant37-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:34:99:8,6,13,7
chr1	243777066	.	G	A	395.52	PASS	AC=1;AF=0.5;AN=2;DP=419;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant21-variant22-variant29-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:535,0,360:6,10,5,15
chr1	244219563	.	A	G	1714.15	PASS	AC=2;AF=1;AN=2;DP=3051;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2732,242,0:0,0,30,51
chr1	244219893	.	CTCTT	C	680.29	PASS	AC=1;AF=0.5;AN=2;DP=443;MQ=60;set=variant-variant7-variant8-variant15-variant17-variant18-variant21-variant24-variant28-variant30-variant32-variant34-variant35-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:313,0,825:7,10,2,8
chr1	244516090	.	T	C	811.91	PASS	AC=2;AF=0.837;AN=2;DP=903;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:875,87,0:0,0,11,18
chr1	244527857	.	T	C	752.86	PASS	AC=2;AF=0.636;AN=2;DP=1079;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1626,135,0:0,0,35,10
chr1	244528127	.	T	C	1514.76	PASS	AC=2;AF=0.818;AN=2;DP=1513;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1807,153,0:0,0,11,40
chr1	244572632	.	G	GA	888.63	PASS	AC=2;AF=0.786;AN=2;DP=3518;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,125:129:99:3323,282,0:2,2,74,51
chr1	244601152	.	C	T	2227.05	PASS	AC=2;AF=0.857;AN=2;DP=2664;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1876,189,0:0,0,25,38
chr1	244613297	.	T	C	1065.1	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.471;QD=12.38;ReadPosRankSum=-0.168;SOR=0.613;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1093,0,1258:20,24,20,22
chr1	244624635	.	G	C	2276.28	PASS	AC=1;AF=0.708;AN=2;DP=2669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:1085,0,1108:28,11,27,11
chr1	244624887	.	T	C	2844.68	PASS	AC=1;AF=0.679;AN=2;DP=4029;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,68:127:99:1633,0,1554:18,41,28,40
chr1	244626948	.	CA	C	122.86	PASS	AC=1;AF=0.588;AN=2;DP=212;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant23-variant27-variant32-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:82:112,0,82:4,2,6,0
chr1	244653556	.	A	T	124.46	PASS	AC=1;AF=0.556;AN=2;DP=74;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant15-variant20-variant27-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:124,0,117:3,0,4,0
chr1	244653781	.	AT	A	1478.57	PASS	AC=1;AF=0.5;AN=2;DP=746;MQ=60;set=variant2-variant8-variant9-variant15-variant18-variant22-variant23-variant29-variant30-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1107,0,1207:15,33,21,24
chr1	244715966	.	G	A	1816.87	PASS	AC=1;AF=0.5;AN=2;DP=1096;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant20-variant21-variant28-variant30-variant31-variant33	GT:AD:DP:GQ:PL:SB	0/1:67,75:142:99:1845,0,1663:27,40,32,43
chr1	244773514	.	C	T	1277.09	PASS	AC=1;AF=0.5;AN=2;DP=1306;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant15-variant17-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant34-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1335,0,1313:35,12,32,16
chr1	244773784	.	T	C	1170.1	PASS	AC=1;AF=0.795;AN=2;DP=1081;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:360,0,1039:3,16,1,9
chr1	244773803	.	T	C	876.22	PASS	AC=1;AF=0.739;AN=2;DP=786;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:300,0,806:1,10,1,6
chr1	244803205	.	CTTT	CT,CTT,C	2919.06	PASS	AC=2,0,0;AF=0.727,0.25,0.023;AN=2;DP=4095;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:97:99:1,0,54,42
chr1	244803490	.	C	CGTA	12172.2	PASS	AC=2;AF=0.756;AN=2;DP=10479;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,291:293:99:13079,793,0:1,1,124,167
chr1	244803821	.	AT	A	461.36	PASS	AC=2;AF=0.955;AN=2;DP=1081;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:842,81,0:0,0,9,18
chr1	244816153	.	G	GA	96.1	PASS	AC=2;AF=0.645;AN=2;DP=494;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:748,57,0:0,0,12,7
chr1	244849568	.	A	G	97.15	PASS	AC=1;AF=0.575;AN=2;DP=165;set=variant-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant20-variant21-variant26-variant30-variant31-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:293,0,221:2,2,4,5
chr1	244852819	.	C	CT	215.35	PASS	AC=1;AF=0.667;AN=2;DP=99;FS=0;MQ=60;set=variant4-variant10-variant14-variant15-variant16-variant20-variant26-variant29-variant30-variant31-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:41:69,0,41:0,2,1,2
chr1	244869479	.	A	G	1613.72	PASS	AC=1;AF=0.587;AN=2;DP=2736;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant20-variant21-variant22-variant26-variant29-variant30-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,62:149:99:1540,0,2429:36,51,21,41
chr1	244871041	.	T	A	1935.21	PASS	AC=1;AF=0.583;AN=2;DP=3187;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant20-variant21-variant22-variant26-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,84:198:99:2118,0,3027:66,48,56,28
chr1	245005373	.	A	G	670.72	PASS	AC=1;AF=0.579;AN=2;DP=892;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:802,0,659:16,15,15,14
chr1	245005492	.	T	TG	1016.72	PASS	AC=1;AF=0.6;AN=2;DP=676;set=variant2-variant7-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:848,0,851:14,11,15,11
chr1	245005713	.	A	C	144.17	PASS	AC=1;AF=0.607;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant34-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:490,0,332:3,8,0,13
chr1	245006492	.	T	TAGAAA	1105.5	PASS	AC=1;AF=0.579;AN=2;DP=1007;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,18:65:99:644,0,2771:34,13,15,3
chr1	245006827	.	A	G	2649.86	PASS	AC=1;AF=0.6;AN=2;DP=3717;MQ=60;set=variant2-variant7-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:139,175:314:99:4484,0,3368:57,82,78,97
chr1	245008066	.	CA	C,CAA	117.15	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=1240;set=filterInvariant-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant24-filterInvariant26-filterInvariant29-variant34-filterInvariant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:91:99:46,25,15,5
chr1	245018456	.	TAGCA	T	229.69	PASS	AC=1;AF=0.556;AN=2;DP=463;MQ=60;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:606,0,424:1,7,4,11
chr1	245021132	.	C	G	375.21	PASS	AC=1;AF=0.556;AN=2;DP=458;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:420,0,645:7,15,5,9
chr1	245021291	.	TA	T	729.78	PASS	AC=1;AF=0.567;AN=2;DP=1092;MQ=60;set=variant2-variant7-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:654,0,747:23,14,21,15
chr1	245025692	.	A	T	151.63	PASS	AC=1;AF=0.588;AN=2;DP=399;set=variant2-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:385,0,513:14,1,12,1
chr1	245025697	.	T	TA,TAA,TAAA,TAAAAAAAAA	485.6	PASS	AC=0,0,1,0;AF=0.405,0.119,0.131,0.012;AN=2;DP=1359;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:33:99:12,3,15,3
chr1	245026341	.	G	A	1174.69	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=6.55;FractionInformativeReads=1;MQ=60;MQRankSum=1.478;QD=15.06;ReadPosRankSum=1.039;SOR=0.259;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:25,53:78:99:1203,0,629:7,18,23,30
chr1	245027349	.	C	T	1685.33	PASS	AC=1;AF=0.567;AN=2;DP=2278;set=variant-variant8-variant13-variant15-variant16-variant18-variant21-variant22-variant26-variant27-variant30-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,79:154:99:2122,0,1794:31,44,29,50
chr1	245133489	.	T	G	988.8	PASS	AC=1;AF=0.682;AN=2;DP=3256;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:896,0,1274:21,30,16,23
chr1	245133539	.	A	G	3079.18	PASS	AC=2;AF=1;AN=2;DP=3384;FS=0;MQ=60;MQRankSum=0.385;ReadPosRankSum=1.655;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2730,213,0:0,0,34,36
chr1	245133549	.	GGC	G	769.67	PASS	AC=1;AF=0.682;AN=2;DP=2474;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:981,0,1266:20,15,13,15
chr1	245133623	.	T	TCCTCC	1497.25	PASS	AC=1;AF=0.697;AN=2;DP=2570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1717,0,1661:18,26,20,22
chr1	245133662	.	G	C	1181.39	PASS	AC=1;AF=0.655;AN=2;DP=2914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,62:123:99:1625,0,1481:25,36,32,30
chr1	245179011	.	CAA	CA,C	284.77	PASS	AC=1,0;AF=0.571,0.129;AN=2;DP=1332;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-filterInvariant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:39:99:8,9,16,6
chr1	245179171	.	C	T	453.45	PASS	AC=1;AF=0.727;AN=2;DP=1571;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:973,0,1190:12,15,12,16
chr1	245179188	.	G	T	420.59	PASS	AC=1;AF=0.757;AN=2;DP=1274;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:856,0,1118:6,15,6,15
chr1	245222634	.	C	G	1228.52	PASS	AC=2;AF=0.966;AN=2;DP=1377;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1768,153,0:0,0,38,13
chr1	245222839	.	G	T	1889.44	PASS	AC=2;AF=1;AN=2;DP=3134;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2947,285,0:0,0,38,57
chr1	245245378	.	T	C	1481.42	PASS	AC=1;AF=0.682;AN=2;DP=2697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,35:86:99:1335,0,2597:25,26,18,17
chr1	245245402	.	C	T	1344.47	PASS	AC=1;AF=0.682;AN=2;DP=2511;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:1492,0,2642:23,28,21,18
chr1	245247180	.	G	A	2910.74	PASS	AC=1;AF=0.667;AN=2;DP=5405;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant27-variant31-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,155:283:99:4252,0,3178:42,86,48,107
chr1	245251020	.	G	T	78.67	PASS	AC=1;AF=0.688;AN=2;DP=671;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:113,0,525:6,11,3,4
chr1	245251140	.	T	G	61.77	PASS	AC=2;AF=0.986;AN=2;DP=191;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:82,6,0:0,0,1,1
chr1	245285197	.	C	CTTATT	69.63	PASS	AC=1;AF=0.5;AN=2;DP=186;MQ=60;set=variant3-variant9-variant15-variant17-variant27-variant32-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:151,0,255:2,3,0,4
chr1	245285401	.	A	ATGT	247.63	PASS	AC=1;AF=0.55;AN=2;DP=70;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:243,0,658:3,0,3,2
chr1	245285405	.	T	C	256.67	PASS	AC=1;AF=0.55;AN=2;DP=76;FractionInformativeReads=1;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:243,0,658:3,0,4,2
chr1	245285407	.	T	A	256.67	PASS	AC=1;AF=0.55;AN=2;DP=78;FractionInformativeReads=1;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:243,0,658:3,0,4,2
chr1	245285409	.	GTGACCTC	G	247.63	PASS	AC=1;AF=0.55;AN=2;DP=79;FractionInformativeReads=1;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:243,0,658:3,0,4,2
chr1	245286313	.	G	A	1110.54	PASS	AC=1;AF=0.65;AN=2;DP=1281;MQ=60;set=variant3-variant7-variant8-variant11-variant13-variant15-variant16-variant19-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant35-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1030,0,1384:31,16,25,13
chr1	245286390	.	A	T	3053.09	PASS	AC=1;AF=0.5;AN=2;DP=2208;MQ=60;set=variant3-variant9-variant10-variant13-variant15-variant16-variant17-variant20-variant23-variant27-variant30-variant32-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,94:173:99:2323,0,1882:43,36,50,44
chr1	245286975	.	A	G	575.61	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.134;QD=17.44;ReadPosRankSum=-0.439;SOR=0.941;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,22:33:99:604,0,278:4,7,7,15
chr1	245287592	.	A	G	1025.26	PASS	AC=1;AF=0.5;AN=2;DP=1287;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant27-variant30-variant32-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:884,0,934:18,23,17,17
chr1	245288239	.	G	A	1589.1	PASS	AC=1;AF=0.5;AN=2;DP=947;MQ=60;set=variant3-variant9-variant10-variant13-variant15-variant16-variant17-variant20-variant23-variant27-variant30-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,51:96:99:1336,0,1301:35,10,36,15
chr1	245288493	.	A	G	1755.57	PASS	AC=1;AF=0.5;AN=2;DP=1911;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant27-variant30-variant32-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,39:101:99:1090,0,1915:26,36,12,27
chr1	245288954	.	T	G	608.4	PASS	AC=1;AF=0.5;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant15-variant17-variant27-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:845,0,704:10,17,11,18
chr1	245290111	.	G	A	1072.39	PASS	AC=1;AF=0.5;AN=2;DP=805;MQ=60;set=variant3-variant9-variant10-variant13-variant15-variant16-variant17-variant20-variant23-variant27-variant29-variant30-variant32-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,16:46:99:375,0,790:18,12,9,7
chr1	245290227	.	G	A	2074.3	PASS	AC=1;AF=0.5;AN=2;DP=2162;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant27-variant29-variant30-variant32-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,53:123:99:1271,0,1751:45,25,31,22
chr1	245290423	.	GA	G	900.16	PASS	AC=1;AF=0.5;AN=2;DP=1400;MQ=60;set=variant3-variant9-variant10-variant13-variant15-variant16-variant17-variant20-variant23-variant27-variant29-variant30-variant32-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,70:101:99:1638,0,526:8,23,24,46
chr1	245318385	.	G	C	1462.88	PASS	AC=2;AF=0.943;AN=2;DP=2696;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2632,249,0:0,0,46,37
chr1	245318688	.	C	T	1364.82	PASS	AC=1;AF=0.63;AN=2;DP=4284;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,87:174:99:2133,0,1987:43,44,43,44
chr1	245772529	.	A	G	919.26	PASS	AC=1;AF=0.563;AN=2;DP=778;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant17-variant23-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,54:131:99:1351,0,1871:41,36,32,22
chr1	245775407	.	TGAGA	T,TGAGAGA	50.98	PASS	AC=0,1;AF=0.125,0.375;AN=2;DP=87;set=filterInvariant3-variant15-variant16-variant29	GT:DP:GQ:SB	0/2:9:73:0,5,0,4
chr1	245851304	.	A	G	4698.41	PASS	AC=2;AF=0.977;AN=2;DP=8916;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:7638,743,0:0,0,111,137
chr1	245866511	.	T	C	2240.89	PASS	AC=2;AF=0.548;AN=2;DP=3606;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant13-variant15-variant16-variant17-variant18-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6988,633,0:0,0,76,135
chr1	245866584	.	G	C	1206.17	PASS	AC=2;AF=0.548;AN=2;DP=1722;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant13-variant15-variant16-variant17-variant18-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3051,269,0:0,0,30,60
chr1	245867357	.	G	GTGAT	708.93	PASS	AC=2;AF=0.563;AN=2;DP=1241;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:2024,135,0:0,0,22,23
chr1	245867743	.	G	A	142.33	PASS	AC=2;AF=0.548;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant26-variant27-variant28-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1387,120,0:0,0,24,16
chr1	245867921	.	G	A	470.59	PASS	AC=2;AF=0.565;AN=2;DP=2071;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,119:121:99:3360,312,0:1,1,56,63
chr1	245868108	.	T	G	1499.12	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=0.668;FractionInformativeReads=1;MQ=60;MQRankSum=-0.458;QD=12.09;ReadPosRankSum=1.492;SOR=0.579;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:64,60:124:99:1527,0,1485:34,30,30,30
chr1	245868167	.	G	GTCTT	2142.97	PASS	AC=1;AF=0.543;AN=2;DP=2877;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,61:133:99:2386,0,2788:38,34,28,33
chr1	245868363	.	G	T	639.88	PASS	AC=1;AF=0.5;AN=2;DP=924;MQ=60;set=variant2-variant3-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,40:76:99:1030,0,1054:19,17,15,25
chr1	245869299	.	T	C	988	PASS	AC=1;AF=0.525;AN=2;DP=1213;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant25-variant27-variant28-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:820,0,894:8,21,9,22
chr1	245871108	.	G	A	555.63	PASS	AC=1;AF=0.526;AN=2;DP=711;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant9-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant28-variant29-variant31-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:715,0,551:12,7,14,13
chr1	245872219	.	T	C	3645.71	PASS	AC=1;AF=0.617;AN=2;DP=8856;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:198,135:333:99:3247,0,5132:93,105,62,73
chr1	246021941	.	T	C	3874.14	PASS	AC=2;AF=0.81;AN=2;DP=5249;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4356,423,0:0,0,64,77
chr1	246022071	.	C	T	1402.53	PASS	AC=2;AF=0.81;AN=2;DP=1770;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,49:50:99:1589,139,0:1,0,13,36
chr1	246022159	.	G	A	482.92	PASS	AC=2;AF=0.951;AN=2;DP=540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:398,30,0:0,0,1,9
chr1	246027024	.	A	G	2626.77	PASS	AC=2;AF=0.81;AN=2;DP=2833;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:4050,271,0:0,0,62,27
chr1	246027029	.	A	T	3115.31	PASS	AC=2;AF=0.81;AN=2;DP=3061;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:4230,283,0:0,0,66,28
chr1	246027034	.	G	C	3297.52	PASS	AC=2;AF=1;AN=2;DP=3443;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4467,307,0:0,0,71,31
chr1	246091457	.	T	C	1163.96	PASS	AC=2;AF=0.92;AN=2;DP=2727;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2712,276,0:0,0,34,58
chr1	246091515	.	C	T	626.49	PASS	AC=2;AF=0.907;AN=2;DP=964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1607,114,0:0,0,9,29
chr1	246091531	.	T	C	466.77	PASS	AC=2;AF=0.977;AN=2;DP=755;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1350,90,0:0,0,5,25
chr1	246093465	.	GA	G	750.08	PASS	AC=2;AF=0.791;AN=2;DP=3068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,67:70:99:1559,129,0:1,2,33,34
chr1	246110573	.	A	G	2456.42	PASS	AC=2;AF=0.802;AN=2;DP=3206;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2922,266,0:0,0,62,27
chr1	246489196	.	C	T	9274.84	PASS	AC=2;AF=0.83;AN=2;DP=12755;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,355:355:99:10399,1063,0:0,0,175,180
chr1	246489706	.	GA	G	1771.89	PASS	AC=2;AF=0.702;AN=2;DP=3324;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,51:53:99:1392,121,0:1,1,19,32
chr1	246490438	.	T	C	1591.77	PASS	AC=2;AF=0.83;AN=2;DP=2820;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3641,244,0:0,0,49,30
chr1	246490442	.	A	G	1793.26	PASS	AC=2;AF=0.83;AN=2;DP=3015;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3905,267,0:0,0,49,32
chr1	246490452	.	G	A	1892.15	PASS	AC=2;AF=0.697;AN=2;DP=2962;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4316,306,0:0,0,63,39
chr1	246498866	.	A	C	1514.27	PASS	AC=2;AF=0.692;AN=2;DP=1326;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1953,162,0:0,0,12,42
chr1	246580688	.	AG	A	166.53	PASS	AC=2;AF=0.577;AN=2;DP=557;MQ=60;set=variant-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:620,54,0:0,0,11,7
chr1	246580718	.	G	A	119.97	PASS	AC=2;AF=0.58;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:683,57,0:0,0,12,7
chr1	246670281	.	G	C	1152.15	PASS	AC=2;AF=1;AN=2;DP=1829;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1533,141,0:0,0,32,15
chr1	246670298	.	CCT	C	300.19	PASS	AC=1;AF=0.5;AN=2;DP=1881;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant32-filterInvariant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,12:55:99:112,0,1440:30,13,5,7
chr1	246670333	.	A	G	3552.91	PASS	AC=2;AF=1;AN=2;DP=3773;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3022,269,0:0,0,52,38
chr1	246670481	.	C	G	5019.18	PASS	AC=1;AF=0.849;AN=2;DP=18619;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:264,285:549:99:6345,0,6106:141,123,146,139
chr1	246670626	.	A	AGGGGC	1885.75	PASS	AC=1;AF=0.849;AN=2;DP=5994;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,55:127:99:2086,0,3639:23,49,19,36
chr1	246703860	.	ATCT	A	187.73	PASS	AC=2;AF=0.7;AN=2;DP=89;FS=0;MQ=60;set=variant-variant3-variant6-variant8-variant12-variant15-variant16-variant25-variant26-variant31-variant34-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,2,3
chr1	246704139	.	C	T	3022.45	PASS	AC=1;AF=0.5;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:127,118:245:99:3051,0,3436:84,43,74,44
chr1	246704563	.	C	T	1084.89	PASS	AC=2;AF=0.62;AN=2;DP=909;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant20-variant21-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1205,90,0:0,0,3,27
chr1	246707816	.	T	C	1012.37	PASS	AC=2;AF=0.64;AN=2;DP=579;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant20-variant21-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1237,117,0:0,0,26,13
chr1	246707858	.	A	G	1920.12	PASS	AC=2;AF=0.64;AN=2;DP=1098;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant20-variant21-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1603,150,0:0,0,32,18
chr1	246711789	.	T	A	714.06	PASS	AC=2;AF=0.686;AN=2;DP=888;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,26:27:70:892,70,0:1,0,20,6
chr1	246712033	.	A	G	873.97	PASS	AC=2;AF=1;AN=2;DP=788;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.552;ReadPosRankSum=1.552;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:53:591,53,0:0,0,4,14
chr1	246714728	.	G	A	293.05	PASS	AC=2;AF=0.854;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:268,21,0:0,0,2,5
chr1	246720174	.	A	G	328.54	PASS	AC=2;AF=0.989;AN=2;DP=306;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.044;ReadPosRankSum=1.393;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:538,39,0:0,0,1,12
chr1	246720798	.	G	A	1453.14	PASS	AC=2;AF=1;AN=2;DP=2334;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1728,177,0:0,0,27,32
chr1	246727558	.	G	T	1281.74	PASS	AC=2;AF=1;AN=2;DP=1604;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1250,129,0:0,0,26,17
chr1	246730090	.	G	C	1157.06	PASS	AC=2;AF=0.966;AN=2;DP=1889;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1383,117,0:0,0,12,27
chr1	246755124	.	T	C	2094.74	PASS	AC=2;AF=0.909;AN=2;DP=3628;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2862,279,0:0,0,43,50
chr1	246797953	.	T	C	572.34	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.154;FractionInformativeReads=1;MQ=60;MQRankSum=1.028;QD=11.22;ReadPosRankSum=-0.972;SOR=1.061;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:601,0,618:10,17,7,17
chr1	246805435	.	GTTTT	GTT,G,GTTT	62.36	PASS	AC=0,1,0;AF=0.125,0.125,0.375;AN=2;DP=45;FS=0;MQ=60;set=variant12-variant15-variant16-variant33	GT:DP:GQ:SB	0/2:9:99:1,4,1,3
chr1	246829616	.	T	C	272.82	PASS	AC=1;AF=0.649;AN=2;DP=1027;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:473,0,703:11,13,8,10
chr1	246829742	.	T	C	56.94	PASS	AC=1;AF=0.645;AN=2;DP=877;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:239,0,483:7,9,5,7
chr1	246829873	.	G	A	154.69	PASS	AC=1;AF=0.649;AN=2;DP=890;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:229,0,583:12,6,7,1
chr1	246830293	.	A	G	4289.46	PASS	AC=1;AF=0.641;AN=2;DP=14095;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:222,246:468:99:5779,0,5483:106,116,112,134
chr1	246830488	.	T	C	3043.45	PASS	AC=1;AF=0.641;AN=2;DP=9533;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,161:326:99:4290,0,4109:89,76,92,69
chr1	246831356	.	G	A	664.29	PASS	AC=1;AF=0.531;AN=2;DP=970;MQ=60;set=variant2-variant3-variant11-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant30-variant31-variant36-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:993,0,1058:25,11,21,16
chr1	246903654	.	G	C	179.69	PASS	AC=1;AF=0.635;AN=2;DP=820;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:380,0,648:9,16,4,8
chr1	246929483	.	A	G	554.65	PASS	AC=1;AF=0.635;AN=2;DP=1290;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:1084,0,529:7,13,8,28
chr1	246931057	.	A	G	1754.3	PASS	AC=1;AF=0.545;AN=2;DP=3194;MQ=60;set=variant2-variant3-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,108:220:99:3040,0,3087:73,39,72,36
chr1	246931242	.	C	T	2898.91	PASS	AC=1;AF=0.635;AN=2;DP=6972;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:186,170:356:99:4404,0,4790:75,111,69,101
chr1	246939610	.	A	ATATT	1812.21	PASS	AC=1;AF=0.645;AN=2;DP=3714;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,70:155:99:2663,0,4615:43,42,32,38
chr1	246939856	.	G	A	815.43	PASS	AC=1;AF=0.655;AN=2;DP=3212;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,48:121:99:1198,0,1985:38,35,26,22
chr1	246939943	.	T	C	1364.11	PASS	AC=1;AF=0.652;AN=2;DP=2971;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,81:155:99:2085,0,1884:35,39,44,37
chr1	246940179	.	G	A	2415.7	PASS	AC=1;AF=0.652;AN=2;DP=3608;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:93,79:172:99:3013,0,4318:54,39,41,38
chr1	246940182	.	C	A	2456.15	PASS	AC=1;AF=0.635;AN=2;DP=4044;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,79:176:99:3011,0,4350:55,42,41,38
chr1	246940442	.	T	C	1466.45	PASS	AC=1;AF=0.65;AN=2;DP=923;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:629,0,414:7,6,11,7
chr1	246943547	.	A	C	201.65	PASS	AC=1;AF=0.565;AN=2;DP=694;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:297,0,358:9,4,8,2
chr1	247004031	.	T	C	254.83	PASS	AC=1;AF=0.5;AN=2;DP=244;FractionInformativeReads=1;set=variant4-variant6-variant8-variant10-variant12-variant15-variant18-variant20-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:223,0,298:9,0,8,0
chr1	247006160	.	G	T	1128.62	PASS	AC=2;AF=0.692;AN=2;DP=1684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,55:56:99:1631,136,0:1,0,20,35
chr1	247016787	.	G	A	1361.78	PASS	AC=2;AF=0.684;AN=2;DP=2016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1981,183,0:0,0,20,41
chr1	247019277	.	T	C	728.59	PASS	AC=1;AF=0.529;AN=2;DP=650;MQ=60;set=variant4-variant6-variant8-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:615,0,610:3,17,2,17
chr1	247021085	.	G	C	564.92	PASS	AC=1;AF=0.531;AN=2;DP=748;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,20:63:99:363,0,1045:21,22,11,9
chr1	247021266	.	C	CTTCT,CTTCTT	157.5	PASS	AC=2,0;AF=0.97,0.03;AN=2;DP=198;FS=0;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	1/1:5:15:0,0,0,5
chr1	247024288	.	T	C	1429.86	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=4.773;FractionInformativeReads=1;MQ=53.37;MQRankSum=-2.07;QD=13.36;ReadPosRankSum=1.208;SOR=0.567;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1458,0,1316:21,29,30,27
chr1	247024691	.	T	C	248.3	PASS	AC=1;AF=0.571;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant35-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:31:159,0,31:1,1,0,4
chr1	247025531	.	C	T	135.2	PASS	AC=1;AF=0.559;AN=2;DP=480;set=variant-variant2-variant3-variant5-variant11-variant14-variant15-variant17-variant18-variant21-variant23-variant27-variant30-variant33-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:241,0,517:6,14,3,7
chr1	247027204	.	C	T	589.42	PASS	AC=1;AF=0.531;AN=2;DP=995;MQ=60;set=variant4-variant6-variant8-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:847,0,1092:21,22,13,19
chr1	247031237	.	C	G	587.07	PASS	AC=2;AF=0.717;AN=2;DP=256;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:398,27,0:0,0,0,9
chr1	247048834	.	T	C	172	PASS	AC=1;AF=0.691;AN=2;DP=464;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:121,0,497:12,4,4,1
chr1	247054530	.	T	C	34.26	PASS	AC=1;AF=0.7;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:347,0,104:0,4,1,9
chr1	247067139	.	CAA	CA,CAAA,C	285.51	PASS	AC=1,0,0;AF=0.553,0.026,0.013;AN=2;DP=1090;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:20:99:8,4,7,1
chr1	247091604	.	CAAA	CAA,CA,C	78.77	PASS	AC=1,0,0;AF=0.4,0.143,0.029;AN=2;DP=1006;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:28:99:6,9,11,2
chr1	247109014	.	G	C	1134.77	PASS	AC=1;AF=0.639;AN=2;DP=1194;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:539,0,506:13,5,14,4
chr1	247109267	.	A	C	5224.22	PASS	AC=1;AF=0.635;AN=2;DP=4646;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,67:163:99:2328,0,5411:39,57,26,41
chr1	247109291	.	CG	C	4167.91	PASS	AC=1;AF=0.569;AN=2;DP=2620;set=variant2-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,50:121:99:1893,0,4974:25,46,19,31
chr1	247109296	.	A	G	3951.13	PASS	AC=1;AF=0.569;AN=2;DP=2452;FractionInformativeReads=1;set=variant2-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,47:115:99:1847,0,4747:23,45,17,30
chr1	247129945	.	A	G	106.77	PASS	AC=1;AF=0.691;AN=2;DP=305;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:311,0,148:4,2,8,0
chr1	247130577	.	C	A	144.9	PASS	AC=1;AF=0.583;AN=2;DP=256;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant12-variant14-variant15-variant19-variant21-variant24-variant28-variant29-variant30-variant31-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:262,0,235:6,4,7,1
chr1	247143029	.	GTTAGT	G	43.7	PASS	AC=2;AF=0.816;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant12-variant13-variant15-variant16-variant17-variant24-variant25-variant27-variant29-variant32-variant34-variant35-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,3,0
chr1	247143092	.	T	A	115.49	PASS	AC=2;AF=0.75;AN=2;DP=247;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:382,39,0:0,0,8,5
chr1	247143130	.	G	A	152.96	PASS	AC=2;AF=0.676;AN=2;DP=486;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:478,51,0:0,0,10,7
chr1	247143268	.	T	C	85.75	PASS	AC=2;AF=0.724;AN=2;DP=287;set=variant-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:276,24,0:0,0,3,5
chr1	247143308	.	TAA	TA,T	41.33	PASS	AC=2,0;AF=0.875,0.083;AN=2;DP=68;FS=0;MQRankSum=-0.731;ReadPosRankSum=-0.731;set=variant7-variant9-variant12-variant15-variant17-variant24-variant29-variant31-variant32-variant35-variant38-variant39	GT:DP:GQ:SB	1/1:3:9:0,0,1,2
chr1	247148627	.	T	G	5755.95	PASS	AC=2;AF=0.7;AN=2;DP=6329;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,218:219:99:6767,645,0:1,0,141,77
chr1	247148911	.	A	ATTT	7112.32	PASS	AC=2;AF=0.7;AN=2;DP=4632;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,168:169:99:7576,469,0:1,0,69,99
chr1	247149918	.	G	A	6857.75	PASS	AC=2;AF=0.716;AN=2;DP=7190;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,253:254:99:7842,734,0:0,1,113,140
chr1	247149996	.	A	G	5347.45	PASS	AC=2;AF=0.7;AN=2;DP=5677;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:5947,589,0:0,0,86,111
chr1	247150740	.	T	C	2577.98	PASS	AC=2;AF=0.7;AN=2;DP=3220;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,112:114:99:3547,292,0:1,1,53,59
chr1	247151557	.	A	G	1561.95	PASS	AC=2;AF=0.689;AN=2;DP=1593;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1462,132,0:0,0,10,34
chr1	247162658	.	C	T	12344.9	PASS	AC=2;AF=0.864;AN=2;DP=16951;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,458:458:99:13387,1372,0:0,0,200,258
chr1	247200173	.	TAC	TACACACACACACAC,TACACACACAC,TACACACACACACACAC,TACACACACACAC,TACACAC,TACACACAC,TACACACACACACACACAC,TACAC,TACACACACACACACACACAC,T,TAGAC	773.12	PASS	AC=0,0,0,1,0,0,0,0,0,0,0;AF=0.25,0.079,0.079,0.145,0.013,0.053,0.053,0.053,0.013,0.013,0.013;AN=2;DP=1435;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/4:36:99:9,8,14,5
chr1	247200394	.	C	T	4130.74	PASS	AC=1;AF=0.5;AN=2;DP=371;FS=2.744;FractionInformativeReads=1;MQ=60;MQRankSum=0.391;QD=11.13;ReadPosRankSum=-2.788;SOR=0.853;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:190,181:371:99:4159,0,4635:100,90,102,79
chr1	247200576	.	T	C	4317.4	PASS	AC=1;AF=0.5;AN=2;DP=343;FS=2.864;FractionInformativeReads=1;MQ=60;MQRankSum=3.123;QD=12.59;ReadPosRankSum=0.854;SOR=0.768;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:178,165:343:99:4346,0,4332:87,91,87,78
chr1	247200618	.	A	G	4255.07	PASS	AC=1;AF=0.5;AN=2;DP=327;FS=1.814;FractionInformativeReads=1;MQ=60;MQRankSum=-0.471;QD=13.01;ReadPosRankSum=-0.294;SOR=0.592;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:166,161:327:99:4283,0,3950:77,89,79,82
chr1	247202360	.	TTC	T	143.28	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=0.8;MQ=60;MQRankSum=0.747;QD=14.33;ReadPosRankSum=0.747;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:10:181,0,10:0,1,2,5
chr1	247264726	.	AT	A	258.55	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=0.844;MQ=60;MQRankSum=1.237;QD=8.08;ReadPosRankSum=1.189;SOR=0.223;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:296,0,285:0,13,1,13
chr1	247267274	.	C	A	623.05	PASS	AC=1;AF=0.543;AN=2;DP=1410;MQ=60;set=variant4-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,36:58:99:1135,0,571:12,10,22,14
chr1	247267668	.	G	T	1810.85	PASS	AC=1;AF=0.63;AN=2;DP=2845;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,63:121:99:1719,0,1524:18,40,19,44
chr1	247274484	.	C	G	90.18	PASS	AC=1;AF=0.583;AN=2;DP=125;MQ=60;set=variant5-variant10-variant15-variant18-variant24-variant28	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:480,0,163:5,5,10,8
chr1	247274899	.	A	G	327.42	PASS	AC=1;AF=0.7;AN=2;DP=534;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant23-variant24-variant28-variant31-variant32-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:551,0,319:7,6,11,12
chr1	247365430	.	A	G	841.02	PASS	AC=1;AF=0.688;AN=2;DP=1813;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,35:81:99:915,0,1212:17,29,13,22
chr1	247419509	.	T	C	3167.1	PASS	AC=2;AF=0.907;AN=2;DP=4561;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3982,378,0:0,0,78,48
chr1	247419664	.	C	T	4348	PASS	AC=2;AF=0.907;AN=2;DP=4913;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4674,454,0:0,0,70,82
chr1	247462048	.	A	G	1335.34	PASS	AC=1;AF=0.762;AN=2;DP=2875;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:903,0,825:18,14,19,19
chr1	247462273	.	A	G	677	PASS	AC=1;AF=0.762;AN=2;DP=2004;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,32:64:99:701,0,768:13,19,14,18
chr1	247462701	.	C	T	1160.91	PASS	AC=1;AF=0.525;AN=2;DP=1654;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant15-variant16-variant19-variant20-variant21-variant25-variant29-variant31-variant33-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,56:105:99:1439,0,1302:27,22,33,23
chr1	247473889	.	C	T	316.24	PASS	AC=1;AF=0.643;AN=2;DP=404;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:95:325,0,95:0,3,3,8
chr1	247485932	.	A	G	1718.71	PASS	AC=2;AF=0.977;AN=2;DP=1650;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1615,159,0:0,0,34,19
chr1	247486213	.	G	A	1178.29	PASS	AC=1;AF=0.641;AN=2;DP=1158;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,11:36:99:209,0,655:9,16,4,7
chr1	247486421	.	G	C	1511.19	PASS	AC=1;AF=0.78;AN=2;DP=1388;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:530,0,634:15,7,14,7
chr1	247486678	.	T	C	1026.04	PASS	AC=1;AF=0.526;AN=2;DP=1037;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant15-variant16-variant19-variant20-variant21-variant25-variant29-variant31-variant33-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:562,0,706:5,18,5,13
chr1	247493031	.	C	G	137.88	PASS	AC=1;AF=0.524;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant29-variant31-variant33-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:251,0,234:2,6,1,7
chr1	247579435	.	G	T	596.18	PASS	AC=1;AF=0.5;AN=2;DP=379;MQ=60;set=variant3-variant15-variant20-variant22-variant28-variant31-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:745,0,401:12,9,16,16
chr1	247582446	.	TTATA	T,TTA	88.89	PASS	AC=1,0;AF=0.167,0.583;AN=2;DP=98;FS=0;MQ=60;set=variant15-variant25-variant37-variant38-variant39-variant41	GT:DP:GQ:SB	0/1:6:79:1,1,0,4
chr1	247586336	.	T	C	320.4	PASS	AC=2;AF=0.54;AN=2;DP=381;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:725,69,0:0,0,16,7
chr1	247587408	.	C	T	3756.23	PASS	AC=1;AF=0.5;AN=2;DP=1910;MQ=60;set=variant3-variant15-variant20-variant22-variant28-variant31-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:89,157:246:99:3608,0,2110:40,49,74,83
chr1	247587531	.	A	G	3041.45	PASS	AC=2;AF=0.943;AN=2;DP=7491;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5227,494,0:0,0,78,87
chr1	247588858	.	C	A	1060.17	PASS	AC=1;AF=0.5;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant19	GT:AD:DP:GQ:PL:SB	0/1:48,63:111:99:1718,0,1256:19,29,30,33
chr1	247593142	.	A	G	230.1	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant20-variant22-variant28-variant31-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:286,0,424:0,11,0,8
chr1	247597329	.	C	T	55.3	PASS	AC=2;AF=0.932;AN=2;DP=259;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:342,24,0:0,0,7,1
chr1	247597365	.	G	A,GTGTTCTGAGGCCTTCTCTATTCCAGAGCTCTCTGGTCAGA	983.6	PASS	AC=2,0;AF=0.393,0.548;AN=2;DP=700;set=variant3-variant4-variant7-variant8-variant9-variant2-variant-variant10-variant6-variant5-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:25:75:0,0,22,3
chr1	247599232	.	G	A	318.63	PASS	AC=1;AF=0.706;AN=2;DP=685;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:222,0,558:14,5,7,2
chr1	247607642	.	C	T	373.26	PASS	AC=1;AF=0.625;AN=2;DP=1379;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:642,0,631:6,15,5,13
chr1	247611570	.	CTTT	CT,CTT,C,CTTTT,CTTTTTT	275.48	PASS	AC=1,0,0,0,0;AF=0.328,0.172,0.047,0.016,0.016;AN=2;DP=1631;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:46:99:9,9,15,13
chr1	247612036	.	G	C	3069.37	PASS	AC=1;AF=0.639;AN=2;DP=7439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:112,123:235:99:2868,0,2672:53,59,62,61
chr1	247612151	.	C	CT	5709.29	PASS	AC=1;AF=0.688;AN=2;DP=8115;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,95:225:99:2312,0,3367:62,68,44,51
chr1	247612295	.	C	T	1632.69	PASS	AC=1;AF=0.671;AN=2;DP=2416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,41:90:99:988,0,1220:18,31,17,24
chr1	247614617	.	C	T	1089.78	PASS	AC=1;AF=0.571;AN=2;DP=3300;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,67:128:99:1618,0,1555:33,28,30,37
chr1	247614693	.	C	T	1785.79	PASS	AC=2;AF=0.977;AN=2;DP=5367;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4358,411,0:0,0,73,64
chr1	247614896	.	A	C	642.08	PASS	AC=1;AF=0.594;AN=2;DP=3334;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,54:125:99:1410,0,2039:38,33,24,30
chr1	247615261	.	GA	G	1789.9	PASS	AC=1;AF=0.625;AN=2;DP=3585;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,54:123:99:1652,0,2180:28,41,22,32
chr1	247615470	.	T	C	232.49	PASS	AC=2;AF=0.864;AN=2;DP=590;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:361,30,0:0,0,3,7
chr1	247681687	.	C	T	38.47	PASS	AC=2;AF=0.722;AN=2;DP=717;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:934,81,0:0,0,15,12
chr1	247681776	.	A	G	574.41	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.028;QD=11.26;ReadPosRankSum=-1.519;SOR=0.641;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:603,0,658:15,12,13,11
chr1	247693819	.	T	TCCCC,TC,TCCC,TCC	226.68	PASS	AC=1,0,0,0;AF=0.083,0.167,0.347,0.069;AN=2;DP=1540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:29:99:4,12,3,10
chr1	247693828	.	C	CA	416.65	PASS	AC=1;AF=0.529;AN=2;DP=652;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant14-variant15-variant16-variant18-variant24-variant27-variant28-variant29-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:470,0,589:3,13,4,12
chr1	247693966	.	T	C	788.67	PASS	AC=2;AF=0.989;AN=2;DP=2050;MQ=60;MQRankSum=1.439;ReadPosRankSum=-0.558;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1529,138,0:0,0,30,16
chr1	247694106	.	C	CTCCGTGGCCTAAACGGGCAGCCGAGCCCG,CTCCGTGGCCTAAATGGGCAGCCGAGCCCG	1817.27	PASS	AC=1,1;AF=0.667,0.202;AN=2;DP=3257;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:81:99:1,0,27,53
chr1	247694550	.	C	G	2753.15	PASS	AC=1;AF=0.768;AN=2;DP=8156;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,86:230:99:1733,0,3783:81,63,48,38
chr1	247694688	.	A	G	2257.66	PASS	AC=1;AF=0.5;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant15-variant27-variant29	GT:AD:DP:GQ:PL:SB	0/1:105,93:198:99:2286,0,2987:35,70,44,49
chr1	247694958	.	G	A	3279.69	PASS	AC=1;AF=0.531;AN=2;DP=3219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant14-variant15-variant16-variant18-variant24-variant27-variant28-variant29-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:104,117:221:99:2864,0,2641:53,51,59,58
chr1	247695427	.	C	G	617.89	PASS	AC=1;AF=0.5;AN=2;DP=1517;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant20-variant21-variant24-variant25-variant26-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,57:129:99:1360,0,1922:35,37,31,26
chr1	247695612	.	G	A	2852.79	PASS	AC=2;AF=1;AN=2;DP=5751;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,132:133:99:4371,388,0:0,1,65,67
chr1	247695756	.	T	C	2822.29	PASS	AC=2;AF=0.989;AN=2;DP=5096;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4882,446,0:0,0,75,74
chr1	247695958	.	T	C	142.43	PASS	AC=2;AF=1;AN=2;DP=415;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:546,42,0:0,0,2,12
chr1	247696857	.	G	C	2746.62	PASS	AC=1;AF=0.942;AN=2;DP=3527;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1194,0,1288:34,11,33,9
chr1	247712303	.	T	C	485.98	PASS	AC=1;AF=0.65;AN=2;DP=2300;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,41:74:99:1193,0,900:22,11,31,10
chr1	247729206	.	CT	C,CTT	76.42	PASS	AC=1,0;AF=0.468,0.032;AN=2;DP=1834;MQ=60;set=filterInvariant6-filterInvariant8-variant10-variant11-variant13-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant25-variant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:52:99:18,22,5,7
chr1	247738136	.	GGATGAGTCATAAGACT	G	1550.56	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0.809;FractionInformativeReads=0.891;MQ=60;MQRankSum=0.533;QD=15.35;ReadPosRankSum=2.617;SOR=0.829;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1588,0,6913:19,28,16,27
chr1	247738639	.	A	G	3541.68	PASS	AC=1;AF=0.5;AN=2;DP=2060;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant10-variant15-variant16-variant21	GT:AD:DP:GQ:PL:SB	0/1:227,190:417:99:4974,0,5863:140,87,123,67
chr1	247738962	.	A	G	2099.84	PASS	AC=1;AF=0.526;AN=2;DP=1800;MQ=60;set=variant3-variant4-variant7-variant12-variant13-variant15-variant16-variant17-variant19-variant22-variant25-variant29-variant30-variant31-variant34-variant36-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1923,0,1870:28,32,29,31
chr1	247740888	.	T	C	2788.62	PASS	AC=1;AF=0.5;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:63,63:126:99:1633,0,1740:25,38,30,33
chr1	247752019	.	G	C	1988.44	PASS	AC=2;AF=0.75;AN=2;DP=6711;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5403,504,0:0,0,81,87
chr1	247752161	.	T	C	1407.31	PASS	AC=1;AF=0.645;AN=2;DP=5391;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,107:199:99:2820,0,2262:46,46,50,57
chr1	247752367	.	A	G	3915.18	PASS	AC=1;AF=0.744;AN=2;DP=5697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,55:140:99:1481,0,2395:38,47,24,31
chr1	247752650	.	AT	A	438.31	PASS	AC=1;AF=0.559;AN=2;DP=730;MQ=60;set=variant5-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant24-variant27-variant29-variant31-variant33-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:638,0,531:9,16,12,16
chr1	247768736	.	AGTGAAAAATGAATAGTTTAGG	A	339.85	PASS	AC=1;AF=0.5;AN=2;DP=364;MQ=60;set=variant-variant9-variant10-variant14-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:736,0,4424:15,6,14,5
chr1	247769592	.	C	T	1681.03	PASS	AC=1;AF=0.5;AN=2;DP=2139;MQ=60;set=variant-variant9-variant10-variant14-variant15-variant18-variant19-variant20-variant24-variant27-variant31-variant33-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,78:176:99:1878,0,2677:49,49,40,38
chr1	247769752	.	A	G	3085.3	PASS	AC=1;AF=0.75;AN=2;DP=7949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,137:250:99:3243,0,2992:60,53,65,72
chr1	247835352	.	C	T	766.45	PASS	AC=2;AF=0.86;AN=2;DP=1368;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1315,125,0:0,0,27,15
chr1	247835950	.	T	C	1570.46	PASS	AC=2;AF=0.672;AN=2;DP=4170;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4581,444,0:0,0,71,77
chr1	247921100	.	T	G	2540.34	PASS	AC=2;AF=0.849;AN=2;DP=4607;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:5105,461,0:0,0,74,80
chr1	247921352	.	C	T	1582.83	PASS	AC=2;AF=0.93;AN=2;DP=3783;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4060,387,0:0,0,64,65
chr1	247921717	.	C	A	784.76	PASS	AC=2;AF=0.93;AN=2;DP=2017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1483,141,0:0,0,18,29
chr1	247921789	.	AGT	AGTGT,AGTGTGT,A,AGTGTGTGT	198.31	PASS	AC=2,0,0,0;AF=0.434,0.145,0.066,0.013;AN=2;DP=817;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:6:1:0,1,1,4
chr1	247921888	.	C	T	620.93	PASS	AC=2;AF=0.989;AN=2;DP=742;FractionInformativeReads=1;MQ=60;MQRankSum=0.376;ReadPosRankSum=0.612;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:567,54,0:0,0,9,9
chr1	247978087	.	G	A	873.44	PASS	AC=2;AF=0.905;AN=2;DP=1739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2063,204,0:0,0,42,26
chr1	247978319	.	A	G	3434.94	PASS	AC=2;AF=1;AN=2;DP=5641;FS=0;MQ=60;MQRankSum=0.144;ReadPosRankSum=0.52;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4420,429,0:0,0,73,70
chr1	247978541	.	AAGG	A	3431.99	PASS	AC=2;AF=0.863;AN=2;DP=5303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:5174,346,0:0,0,58,57
chr1	247978996	.	A	G	1536.86	PASS	AC=2;AF=0.905;AN=2;DP=2311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2484,248,0:0,0,35,48
chr1	248004614	.	G	A	3268.68	PASS	AC=2;AF=0.884;AN=2;DP=5372;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4883,477,0:0,0,75,85
chr1	248004687	.	C	G	2723.26	PASS	AC=2;AF=0.875;AN=2;DP=6328;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5117,490,0:0,0,85,79
chr1	248004775	.	C	T	1653.55	PASS	AC=2;AF=0.875;AN=2;DP=5173;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3850,370,0:0,0,55,69
chr1	248004848	.	G	C	1453.67	PASS	AC=2;AF=0.875;AN=2;DP=3962;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3134,280,0:0,0,42,52
chr1	248004877	.	C	T	1720.27	PASS	AC=2;AF=0.875;AN=2;DP=3743;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3950,271,0:0,0,48,41
chr1	248004884	.	T	C	1661.48	PASS	AC=2;AF=0.966;AN=2;DP=3749;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:4009,277,0:0,0,47,44
chr1	248005213	.	G	C	3151.61	PASS	AC=2;AF=0.875;AN=2;DP=4870;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,126:127:99:3876,370,0:1,0,52,74
chr1	248020448	.	G	A	1000.87	PASS	AC=2;AF=0.816;AN=2;DP=1058;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1191,96,0:0,0,21,11
chr1	248020556	.	G	C	3414.59	PASS	AC=2;AF=0.795;AN=2;DP=4129;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4432,422,0:0,0,90,51
chr1	248028219	.	G	A	599	PASS	AC=1;AF=0.636;AN=2;DP=1304;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:424,0,242:3,7,4,10
chr1	248039451	.	C	T	2463.04	PASS	AC=2;AF=0.63;AN=2;DP=2925;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4204,380,0:0,0,58,69
chr1	248039713	.	A	G	3151.37	PASS	AC=1;AF=0.744;AN=2;DP=3888;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,51:122:99:1292,0,1696:37,34,25,26
chr1	248040293	.	T	C	3448.83	PASS	AC=2;AF=1;AN=2;DP=3759;FS=0;MQ=60;MQRankSum=2.226;ReadPosRankSum=-0.528;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3601,314,0:0,0,30,75
chr1	248041182	.	T	G	400.9	PASS	AC=1;AF=0.763;AN=2;DP=743;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,17:25:99:491,0,273:0,8,6,11
chr1	248058755	.	A	G	106.77	PASS	AC=2;AF=0.976;AN=2;DP=253;FS=0;MQ=60;MQRankSum=0.922;ReadPosRankSum=0.922;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:222,15,0:0,0,5,0
chr1	248058761	.	G	C	106.77	PASS	AC=1;AF=0.727;AN=2;DP=170;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant11-variant13-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,117:3,0,2,0
chr1	248058797	.	T	G	414.76	PASS	AC=2;AF=0.977;AN=2;DP=857;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:763,60,0:0,0,17,3
chr1	248058845	.	A	C	848.32	PASS	AC=2;AF=0.977;AN=2;DP=2134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1970,174,0:0,0,43,15
chr1	248058879	.	A	T	1590.41	PASS	AC=2;AF=0.977;AN=2;DP=3552;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,91:92:99:2771,265,0:1,0,59,32
chr1	248059423	.	C	T	6445.63	PASS	AC=1;AF=0.636;AN=2;DP=7645;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:150,120:270:99:2817,0,3958:73,77,55,65
chr1	248059456	.	G	A	2050.05	PASS	AC=1;AF=0.633;AN=2;DP=7198;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,116:273:99:2881,0,4073:80,77,57,59
chr1	248059476	.	A	C	5891.4	PASS	AC=2;AF=0.885;AN=2;DP=9098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:8046,748,0:0,0,122,128
chr1	248059703	.	T	A	7532.24	PASS	AC=1;AF=0.731;AN=2;DP=7642;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,135:229:99:5352,0,4660:42,52,60,75
chr1	248059712	.	T	C	7372.47	PASS	AC=1;AF=0.744;AN=2;DP=7245;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,132:230:99:5239,0,4729:44,54,58,74
chr1	248059804	.	C	T	1909.37	PASS	AC=1;AF=0.5;AN=2;DP=366;FractionInformativeReads=1;MQ=60;set=variant15-variant31-variant39	GT:AD:DP:GQ:PL:SB	0/1:61,73:134:99:1938,0,1707:26,35,33,40
chr1	248059856	.	T	C	2717.97	PASS	AC=1;AF=0.744;AN=2;DP=4006;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,55:114:99:1278,0,1547:28,31,26,29
chr1	248060029	.	A	G	975.82	PASS	AC=2;AF=0.966;AN=2;DP=1166;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1044,96,0:0,0,12,20
chr1	248084434	.	G	A	2804.28	PASS	AC=2;AF=0.821;AN=2;DP=3686;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3134,313,0:0,0,45,60
chr1	248084464	.	T	C	1698.6	PASS	AC=2;AF=0.955;AN=2;DP=2892;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2344,209,0:0,0,21,49
chr1	248084471	.	A	G	660.67	PASS	AC=1;AF=0.567;AN=2;DP=762;set=variant4-variant9-variant10-variant12-variant13-variant15-variant25-variant28-variant29-filterInvariant30-variant31-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,14:56:99:460,0,1591:16,26,1,13
chr1	248084473	.	C	A	660.67	PASS	AC=1;AF=0.577;AN=2;DP=658;FractionInformativeReads=1;set=variant4-variant9-variant10-variant13-variant15-variant28-variant29-filterInvariant30-variant31-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,14:56:99:460,0,1591:15,27,1,13
chr1	248084511	.	T	C	1200.5	PASS	AC=1;AF=0.591;AN=2;DP=647;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant19-variant20-variant25-variant28-variant29-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,6:31:99:170,0,725:7,18,0,6
chr1	248084609	.	C	T	55.54	PASS	AC=2;AF=1;AN=2;DP=74;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant13-variant15-variant16-variant21-variant22-variant24-variant25-variant26-variant27-variant32-variant33-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:174,12,0:0,0,0,4
chr1	248084625	.	C	G	61.77	PASS	AC=1;AF=0.917;AN=2;DP=41;FS=0;FractionInformativeReads=1;set=variant2-filterInvariant3-variant5-variant8-variant15-variant16-variant22-variant24-variant26-variant27-variant32-filterInvariant33	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,120:0,3,0,2
chr1	248084627	.	C	T	61.77	PASS	AC=1;AF=0.917;AN=2;DP=39;FS=0;FractionInformativeReads=1;set=variant2-filterInvariant3-variant5-variant8-variant15-variant16-variant22-variant24-variant26-variant27-variant32-filterInvariant33	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,120:0,3,0,2
chr1	248084631	.	A	C	61.77	PASS	AC=1;AF=0.909;AN=2;DP=34;FS=0;FractionInformativeReads=1;set=variant2-filterInvariant3-variant5-variant15-variant16-variant22-variant24-variant26-variant27-filterInvariant32-filterInvariant33	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,120:0,3,0,2
chr1	248084825	.	C	T	313.46	PASS	AC=1;AF=0.853;AN=2;DP=500;FractionInformativeReads=1;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:14:211,0,14:1,1,5,5
chr1	248084980	.	G	T	93.53	PASS	AC=1;AF=0.839;AN=2;DP=180;set=variant2-variant3-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:183,0,100:3,2,5,0
chr1	248085108	.	C	T	1861.97	PASS	AC=2;AF=0.837;AN=2;DP=3055;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,86:90:99:2962,160,0:1,3,67,19
chr1	248085341	.	T	A	2175.71	PASS	AC=2;AF=0.884;AN=2;DP=2706;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2206,186,0:0,0,13,49
chr1	248112627	.	T	C	7445.38	PASS	AC=1;AF=0.692;AN=2;DP=12232;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:245,171:416:99:4275,0,6286:117,128,75,96
chr1	248112745	.	G	T	6451.64	PASS	AC=1;AF=0.818;AN=2;DP=9677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,250:299:99:10065,0,1138:14,35,132,118
chr1	248112754	.	T	C	453.92	PASS	AC=1;AF=0.5;AN=2;DP=3560;set=variant6-variant8-filterInvariant9-variant12-variant13-filterInvariant15-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant29-variant34-filterInvariant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:253,41:294:99:531,0,10684:134,119,9,32
chr1	248112762	.	T	C	8478.52	PASS	AC=1;AF=0.807;AN=2;DP=9516;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,251:291:99:7340,0,933:8,32,135,116
chr1	248112763	.	G	A	8523.52	PASS	AC=1;AF=0.807;AN=2;DP=9533;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,251:292:99:7343,0,911:8,33,135,116
chr1	248112771	.	C	T	8422.94	PASS	AC=1;AF=0.807;AN=2;DP=9818;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,275:309:99:11238,0,639:7,27,149,126
chr1	248112809	.	A	G	6821.24	PASS	AC=2;AF=0.965;AN=2;DP=11233;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:6,347:353:99:10078,765,0:1,5,178,169
chr1	248112836	.	A	G	6809.8	PASS	AC=2;AF=0.966;AN=2;DP=12077;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,348:349:99:10530,1000,0:0,1,161,187
chr1	248112915	.	A	G	6420.5	PASS	AC=1;AF=0.618;AN=2;DP=4424;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant19-variant20-variant25-variant29-variant30-variant31-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:172,127:299:99:3174,0,4388:79,93,57,70
chr1	248113026	.	T	A	3810.96	PASS	AC=2;AF=0.966;AN=2;DP=7734;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6449,613,0:0,0,95,110
chr1	248113040	.	A	G	3959.03	PASS	AC=2;AF=1;AN=2;DP=7366;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:6320,588,0:0,0,87,109
chr1	248113121	.	C	A	2362.34	PASS	AC=1;AF=0.605;AN=2;DP=2028;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant19-variant20-variant25-variant29-variant30-variant31-variant34-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:67,61:128:99:1575,0,1690:23,44,25,36
chr1	248113206	.	C	G	552.37	PASS	AC=2;AF=0.966;AN=2;DP=1508;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1633,141,0:0,0,12,35
chr1	248128929	.	G	A	4730.35	PASS	AC=1;AF=0.595;AN=2;DP=2671;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant19-variant20-variant23-variant25-variant29-variant30-variant31-variant34-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,80:177:99:1981,0,2672:43,54,37,43
chr1	248129240	.	G	A	3577.73	PASS	AC=1;AF=0.789;AN=2;DP=4998;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,82:154:99:2198,0,1691:31,41,39,43
chr1	248154224	.	C	T	4208.17	PASS	AC=1;AF=0.5;AN=2;DP=1849;MQ=60;set=variant6-variant8-variant15-variant23-variant44	GT:AD:DP:GQ:PL:SB	0/1:215,242:457:99:6099,0,5241:105,110,120,122
chr1	248185883	.	G	A	6352.12	PASS	AC=1;AF=0.5;AN=2;DP=2475;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant23-variant44	GT:AD:DP:GQ:PL:SB	0/1:287,269:556:99:7030,0,7433:149,138,134,135
chr1	248202344	.	G	C	5988.13	PASS	AC=1;AF=0.588;AN=2;DP=7556;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant23-variant25-variant28-variant29-variant34-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:292,236:528:99:5743,0,7658:140,152,115,121
chr1	248224099	.	T	C	1977.85	PASS	AC=1;AF=0.563;AN=2;DP=2142;FractionInformativeReads=1;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,73:147:99:1937,0,2273:39,35,34,39
chr1	248224216	.	C	T	3230.38	PASS	AC=1;AF=0.563;AN=2;DP=3844;FractionInformativeReads=1;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,96:264:99:2199,0,4606:97,71,58,38
chr1	248224294	.	C	T	3566.33	PASS	AC=1;AF=0.588;AN=2;DP=5857;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:250,131:381:99:2906,0,6629:126,124,62,69
chr1	248224398	.	A	G	1797.92	PASS	AC=1;AF=0.563;AN=2;DP=3957;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-filterInvariant21-variant22-variant23-variant29-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:261,74:335:99:1571,0,7351:128,133,17,57
chr1	248224489	.	A	G	518.66	PASS	AC=1;AF=0.625;AN=2;DP=2211;set=variant6-filterInvariant9-variant12-filterInvariant15-filterInvariant20-variant22-filterInvariant29-variant34-variant37-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:226,35:261:99:230,0,6386:108,118,17,18
chr1	248224595	.	C	T	86.44	PASS	AC=1;AF=0.5;AN=2;DP=1123;set=filterInvariant6-variant12-filterInvariant15-filterInvariant22-variant34-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:244,33:277:99:119,0,9712:120,124,17,16
chr1	248224754	.	T	C	3457.18	PASS	AC=1;AF=0.588;AN=2;DP=4295;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,153:313:99:3517,0,4138:68,92,83,70
chr1	248247190	.	G	A	436.81	PASS	AC=1;AF=0.625;AN=2;DP=189;FractionInformativeReads=1;set=variant15-variant17-variant20-variant40	GT:AD:DP:GQ:PL:SB	0/1:34,15:49:99:465,0,976:20,14,2,13
chr1	248247237	.	C	A	84.83	PASS	AC=1;AF=0.5;AN=2;DP=2468;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant26-filterInvariant27-filterInvariant29-filterInvariant30-variant31-variant33-filterInvariant35-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:59,20:79:99:339,0,1532:41,18,18,2
chr1	248247308	.	A	C	1318.98	PASS	AC=1;AF=0.5;AN=2;DP=8247;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:143,96:239:99:1843,0,3552:90,53,60,36
chr1	248247586	.	T	G	793.5	PASS	AC=1;AF=0.523;AN=2;DP=2055;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:1396,0,1181:16,14,23,12
chr1	248247590	.	G	A	835.49	PASS	AC=1;AF=0.512;AN=2;DP=2130;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:1470,0,1175:16,14,22,13
chr1	248247592	.	G	C	838.5	PASS	AC=1;AF=0.512;AN=2;DP=2161;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:1412,0,1151:16,14,22,13
chr1	248247638	.	T	C	45.09	PASS	AC=1;AF=0.5;AN=2;DP=1188;set=filterInvariant4-filterInvariant6-variant8-variant9-variant10-variant13-variant15-variant17-variant25-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,18:93:99:246,0,1983:43,32,10,8
chr1	248247706	.	G	A	562.94	PASS	AC=1;AF=0.5;AN=2;DP=1331;set=variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant21-variant22-variant23-variant25-variant29-variant34-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,48:132:99:1142,0,2244:41,43,29,19
chr1	248247744	.	G	T	243.64	PASS	AC=1;AF=0.5;AN=2;DP=1336;FractionInformativeReads=1;set=variant4-variant9-variant10-variant13-variant15-variant28-filterInvariant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,21:137:99:486,0,4797:63,53,8,13
chr1	248247745	.	GC	G	145.98	PASS	AC=1;AF=0.528;AN=2;DP=1858;set=filterInvariant3-variant4-variant9-variant10-filterInvariant11-variant13-variant15-variant20-variant28-filterInvariant29-variant30-variant31-variant35-filterInvariant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,27:137:99:764,0,4538:63,47,8,19
chr1	248285441	.	G	T	1642.03	PASS	AC=1;AF=0.5;AN=2;DP=1297;MQ=60;set=variant6-variant8-variant13-variant15-variant17-variant22-variant23-variant29-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,74:149:99:2344,0,2332:33,42,33,41
chr1	248285487	.	A	G	2392.55	PASS	AC=1;AF=0.5;AN=2;DP=1999;set=variant6-variant8-variant13-variant15-variant17-variant22-variant23-variant29-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,113:219:99:3359,0,2841:61,45,67,46
chr1	248343543	.	C	T	2152.62	PASS	AC=1;AF=0.737;AN=2;DP=7315;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,112:207:99:3155,0,2764:53,42,70,42
chr1	248343945	.	C	G	2550.77	PASS	AC=1;AF=0.737;AN=2;DP=9358;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,119:285:99:3212,0,4341:74,92,52,67
chr1	248343990	.	T	C	2213.09	PASS	AC=1;AF=0.737;AN=2;DP=7694;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,114:253:99:2909,0,3536:62,77,46,68
chr1	248344442	.	C	T	94.73	PASS	AC=1;AF=0.75;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:145,0,107:0,3,0,4
chr1	248366702	.	G	A	5368.43	PASS	AC=1;AF=0.705;AN=2;DP=16499;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,225:441:99:5757,0,5497:114,102,123,102
chr1	248366792	.	T	C	6388.75	PASS	AC=1;AF=0.5;AN=2;DP=5841;set=variant3-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant25-variant33-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:264,240:504:99:6208,0,6806:129,135,114,126
chr1	248367415	.	C	T	993.15	PASS	AC=2;AF=0.802;AN=2;DP=1916;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2297,201,0:0,0,15,52
chr1	248402758	.	C	T	1201.62	PASS	AC=2;AF=0.78;AN=2;DP=4230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,92:93:99:3000,267,0:0,1,34,58
chr1	248436611	.	G	A	1195.57	PASS	AC=2;AF=0.779;AN=2;DP=5161;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:5246,355,0:0,0,69,46
chr1	248436616	.	A	G	1251.01	PASS	AC=2;AF=0.779;AN=2;DP=5354;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:5313,364,0:0,0,71,50
chr1	248436805	.	T	G	554.62	PASS	AC=2;AF=0.739;AN=2;DP=4729;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:6,105:111:99:3592,200,0:3,3,42,63
chr1	248436809	.	G	A	883.09	PASS	AC=1;AF=0.5;AN=2;DP=4394;set=variant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,34:99:99:1219,0,2757:21,44,14,20
chr1	248436811	.	G	C	883.09	PASS	AC=1;AF=0.5;AN=2;DP=4342;set=variant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,33:98:99:1219,0,2757:21,44,13,20
chr1	248436857	.	C	T	63.49	PASS	AC=1;AF=0.5;AN=2;DP=620;set=filterInvariant11-variant13-variant15-filterInvariant16-filterInvariant17-variant33-filterInvariant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,14:78:99:263,0,1659:26,38,11,3
chr1	248436972	.	A	G	1199.74	PASS	AC=1;AF=0.529;AN=2;DP=1424;set=variant3-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant23-variant25-variant33-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,59:111:99:1346,0,1383:34,18,31,28
chr1	248437210	.	T	C	1393.83	PASS	AC=1;AF=0.5;AN=2;DP=1024;FractionInformativeReads=1;set=variant3-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant25-variant33-variant35-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1203,0,1019:12,27,13,31
chr1	248437247	.	GCCCTAA	G	1042.35	PASS	AC=2;AF=0.779;AN=2;DP=1639;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1666,118,0:0,0,8,31
chr1	248457979	.	C	A	3426.87	PASS	AC=2;AF=0.774;AN=2;DP=14543;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,436:439:99:15762,1272,0:2,1,203,233
chr1	248457993	.	C	G	4543.49	PASS	AC=1;AF=0.538;AN=2;DP=4188;set=variant3-variant8-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:225,187:412:99:4546,0,5686:109,116,80,107
chr1	248458569	.	T	G	78.09	PASS	AC=1;AF=0.5;AN=2;DP=187;FractionInformativeReads=1;set=variant11-variant15-filterInvariant17-filterInvariant25-filterInvariant33-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:74:74,0,533:8,6,3,2
chr1	248458571	.	T	A	94.01	PASS	AC=1;AF=0.672;AN=2;DP=553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:331,0,264:5,3,6,5
chr1	248458676	.	T	C	628.02	PASS	AC=2;AF=0.744;AN=2;DP=2911;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,63:66:64:2676,64,0:0,3,49,14
chr1	248458689	.	A	G	749.11	PASS	AC=2;AF=0.744;AN=2;DP=3532;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,74:77:97:3041,97,0:0,3,55,19
chr1	248458717	.	C	G	987.51	PASS	AC=2;AF=0.75;AN=2;DP=4673;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3697,312,0:0,0,57,45
chr1	248458736	.	A	G	2776.14	PASS	AC=1;AF=0.536;AN=2;DP=1780;set=variant3-variant8-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant34-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,54:124:99:2074,0,2791:37,33,31,23
chr1	248458760	.	C	A	3334.73	PASS	AC=1;AF=0.533;AN=2;DP=2340;set=variant3-variant8-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant34-variant35-variant39-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,74:164:99:2516,0,3246:47,43,41,33
chr1	248458875	.	CT	C	3134.22	PASS	AC=1;AF=0.538;AN=2;DP=2058;set=variant3-variant8-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,95:175:99:3305,0,2644:35,45,39,56
chr1	248458974	.	T	A	374.48	PASS	AC=2;AF=0.767;AN=2;DP=2414;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1371,120,0:0,0,11,29
chr1	248486895	.	G	T	1268.48	PASS	AC=2;AF=0.779;AN=2;DP=6591;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6466,620,0:0,0,128,79
chr1	248486913	.	A	G	1859.91	PASS	AC=2;AF=0.779;AN=2;DP=7850;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7698,720,0:0,0,149,91
chr1	248487016	.	C	T	4114.73	PASS	AC=1;AF=0.538;AN=2;DP=3345;MQ=60;set=variant3-variant8-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:174,158:332:99:3924,0,4550:88,86,78,80
chr1	248487300	.	C	T	4295.81	PASS	AC=1;AF=0.667;AN=2;DP=11759;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:210,197:407:99:5070,0,5430:109,101,103,94
chr1	248487338	.	C	A	4676.93	PASS	AC=2;AF=0.779;AN=2;DP=13757;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,388:388:99:12601,1160,0:0,0,206,182
chr1	248487638	.	A	G	2425	PASS	AC=2;AF=0.779;AN=2;DP=7878;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:6453,547,0:0,0,85,98
chr1	248487768	.	A	G	4116.89	PASS	AC=2;AF=0.779;AN=2;DP=13893;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,369:369:99:12230,1106,0:0,0,233,136
chr1	248512064	.	T	G	743.03	PASS	AC=1;AF=0.722;AN=2;DP=2737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,45:104:99:1082,0,1409:32,27,29,16
chr1	248512094	.	C	T	1044.81	PASS	AC=1;AF=0.722;AN=2;DP=3539;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,59:125:99:1434,0,1661:35,31,35,24
chr1	248512498	.	A	G	3032.32	PASS	AC=1;AF=0.538;AN=2;DP=2259;MQ=60;set=variant3-variant8-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:114,68:182:99:1744,0,3173:52,62,27,41
chr1	248512637	.	C	T	1707.64	PASS	AC=1;AF=0.722;AN=2;DP=4299;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,77:135:99:2173,0,1631:27,31,32,45
chr1	248512749	.	G	A	1104.68	PASS	AC=1;AF=0.722;AN=2;DP=3048;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,61:109:99:1631,0,1359:26,22,27,34
chr1	248512767	.	G	T	996.32	PASS	AC=1;AF=0.722;AN=2;DP=2964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,57:106:99:1645,0,1431:26,23,29,28
chr1	248513023	.	G	A	2666.08	PASS	AC=1;AF=0.722;AN=2;DP=7753;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,110:229:99:2754,0,2945:59,60,48,62
chr1	248513088	.	G	C	1680.01	PASS	AC=1;AF=0.722;AN=2;DP=4560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,70:158:99:1713,0,2299:31,57,24,46
chr1	248524937	.	ATGGGACTCTTCAGACAATCCAAACATCCAATGGCCAATATCACCTGGATGGCCAACCACACTGGATGGTCGGATTTCATCCTGT	A	1112.25	PASS	AC=1;AF=0.5;AN=2;DP=3344;set=variant3-variant11-filterInvariant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:267,47:314:99:669,0,12327:154,113,24,23
chr1	248525053	.	A	T	1347.63	PASS	AC=1;AF=0.5;AN=2;DP=2696;set=variant3-variant11-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:242,47:289:99:1482,0,10623:124,118,20,27
chr1	248525060	.	T	A	1105.68	PASS	AC=1;AF=0.5;AN=2;DP=2730;set=variant3-variant11-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:240,50:290:99:1452,0,10228:121,119,25,25
chr1	248525071	.	T	C	1171.66	PASS	AC=1;AF=0.5;AN=2;DP=2734;set=variant3-variant11-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:235,50:285:99:1445,0,9571:120,115,26,24
chr1	248525135	.	G	A	2045.37	PASS	AC=1;AF=0.5;AN=2;DP=9299;set=variant-variant4-variant7-variant8-filterInvariant9-variant10-variant14-variant15-variant16-variant17-variant20-filterInvariant21-variant22-variant25-filterInvariant30-variant33-variant34-filterInvariant36-variant37-filterInvariant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:283,42:325:99:941,0,13893:139,144,25,17
chr1	248525138	.	C	T	2061.1	PASS	AC=1;AF=0.5;AN=2;DP=9409;set=variant-variant4-variant7-variant8-filterInvariant9-variant10-variant14-variant15-variant16-variant17-variant20-filterInvariant21-variant22-variant25-filterInvariant30-variant33-variant34-filterInvariant36-variant37-filterInvariant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:284,48:332:99:997,0,13968:141,143,26,22
chr1	248525146	.	C	T	2767.74	PASS	AC=1;AF=0.5;AN=2;DP=3878;set=variant3-variant11-variant13-variant15-variant16-variant17-filterInvariant25-filterInvariant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:276,73:349:99:1066,0,8670:144,132,34,39
chr1	248525193	.	C	T	1140.84	PASS	AC=1;AF=0.5;AN=2;DP=4397;FractionInformativeReads=1;set=variant3-variant11-variant13-variant15-variant16-filterInvariant17-filterInvariant25-filterInvariant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:326,71:397:99:866,0,8673:169,157,39,32
chr1	248525285	.	T	C	1240.15	PASS	AC=1;AF=0.5;AN=2;DP=3624;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:305,65:370:99:1668,0,20567:140,165,41,24
chr1	248525290	.	C	T	1342.2	PASS	AC=1;AF=0.5;AN=2;DP=3559;FractionInformativeReads=1;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-filterInvariant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:305,58:363:99:1650,0,20668:137,168,39,19
chr1	248525291	.	G	C	1354.2	PASS	AC=1;AF=0.5;AN=2;DP=3561;FractionInformativeReads=1;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-filterInvariant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:306,59:365:99:1552,0,20617:138,168,39,20
chr1	248525328	.	C	CTA	3228.05	PASS	AC=1;AF=0.5;AN=2;DP=3398;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:236,89:325:99:3138,0,15989:107,129,58,31
chr1	248525330	.	A	G	3236.87	PASS	AC=1;AF=0.5;AN=2;DP=3409;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:237,90:327:99:3138,0,15989:108,129,58,32
chr1	248525638	.	CA	C	3333.65	PASS	AC=1;AF=0.654;AN=2;DP=10718;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,162:314:99:5557,0,5934:68,84,76,86
chr1	248525647	.	C	A	5317.48	PASS	AC=1;AF=0.5;AN=2;DP=3090;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:155,147:302:99:5587,0,6141:74,81,64,83
chr1	248525650	.	C	T	5331.36	PASS	AC=1;AF=0.5;AN=2;DP=3044;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:154,142:296:99:5520,0,6075:74,80,61,81
chr1	248525657	.	G	A	5040.51	PASS	AC=1;AF=0.5;AN=2;DP=2934;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:149,136:285:99:5238,0,5951:72,77,62,74
chr1	248525780	.	C	T	2931.17	PASS	AC=1;AF=0.5;AN=2;DP=1944;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:112,91:203:99:2413,0,3085:53,59,46,45
chr1	248550894	.	T	G	1021.13	PASS	AC=1;AF=0.5;AN=2;DP=895;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,24:77:99:494,0,1334:34,19,17,7
chr1	248550970	.	A	G	2144.89	PASS	AC=1;AF=0.5;AN=2;DP=1770;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,58:155:99:1242,0,2469:55,42,33,25
chr1	248550976	.	T	G	1616.15	PASS	AC=2;AF=0.75;AN=2;DP=6050;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5702,486,0:0,0,91,71
chr1	248551203	.	T	C	1473.14	PASS	AC=1;AF=0.5;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1443,0,1331:22,22,24,25
chr1	248551560	.	C	T	3275.94	PASS	AC=1;AF=0.5;AN=2;DP=2776;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:152,127:279:99:2922,0,3650:81,71,66,61
chr1	248551636	.	T	G	2849.97	PASS	AC=1;AF=0.5;AN=2;DP=2728;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:128,123:251:99:3170,0,3273:55,73,58,65
chr1	248551955	.	C	A	354.12	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:360,0,293:3,8,1,10
chr1	248569282	.	A	G	882.65	PASS	AC=1;AF=0.615;AN=2;DP=2235;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:808,0,1156:28,14,22,11
chr1	248569369	.	A	G	1955.64	PASS	AC=1;AF=0.618;AN=2;DP=5439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,91:188:99:2176,0,2354:60,37,55,36
chr1	248569903	.	C	G	2890.14	PASS	AC=1;AF=0.5;AN=2;DP=212;FS=1.062;FractionInformativeReads=1;MQ=60;MQRankSum=-1.38;QD=13.63;ReadPosRankSum=1.955;SOR=0.795;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:100,112:212:99:2918,0,2471:52,48,61,51
chr1	248570440	.	G	A	684.34	PASS	AC=2;AF=0.86;AN=2;DP=3269;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2940,263,0:0,0,37,51
chr1	248570551	.	A	AGAGT	481.3	PASS	AC=1;AF=0.763;AN=2;DP=1056;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:992,0,1929:9,12,7,19
chr1	248570553	.	A	AT	481.3	PASS	AC=1;AF=0.763;AN=2;DP=967;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:992,0,1929:9,12,7,16
chr1	248604452	.	A	G	644.75	PASS	AC=1;AF=0.515;AN=2;DP=1192;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant31-variant32-variant34-variant35-variant37-filterInvariant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:353,0,670:12,5,8,2
chr1	248604465	.	C	T	1098.17	PASS	AC=1;AF=0.537;AN=2;DP=1608;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:321,0,715:12,6,6,3
chr1	248604542	.	C	T	995.3	PASS	AC=1;AF=0.565;AN=2;DP=1273;FractionInformativeReads=1;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-filterInvariant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:196,0,468:8,10,0,8
chr1	248604559	.	T	TTC	579.08	PASS	AC=2;AF=0.913;AN=2;DP=1076;set=variant2-filterInvariant3-variant4-variant5-variant6-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:57:835,57,0:0,0,1,16
chr1	248604614	.	A	T	294.6	PASS	AC=1;AF=0.533;AN=2;DP=893;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant8-variant11-filterInvariant12-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant19-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant32-filterInvariant33-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,27:40:99:667,0,297:3,10,14,13
chr1	248604765	.	T	A	923.37	PASS	AC=1;AF=0.709;AN=2;DP=3056;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:10,55:65:52:1453,0,52:5,5,31,24
chr1	248605395	.	T	G	1434.62	PASS	AC=1;AF=0.5;AN=2;DP=1415;FractionInformativeReads=1;set=variant-variant4-variant8-variant11-variant15-variant17-variant25-variant35-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:60,79:139:99:1964,0,1486:19,41,35,44
chr1	248605436	.	C	G	2239.47	PASS	AC=1;AF=0.692;AN=2;DP=2792;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,26:77:99:901,0,1999:15,36,7,19
chr1	248605442	.	G	T	598.84	PASS	AC=1;AF=0.688;AN=2;DP=2548;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,25:72:99:910,0,1934:12,35,7,18
chr1	248637046	.	G	A	526.8	PASS	AC=1;AF=0.5;AN=2;DP=2895;set=filterInvariant-filterInvariant3-filterInvariant4-variant7-filterInvariant8-variant9-variant10-filterInvariant15-filterInvariant17-filterInvariant20-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant30-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,58:133:99:1152,0,1850:37,38,21,37
chr1	248637115	.	T	C	78.65	PASS	AC=1;AF=0.55;AN=2;DP=458;set=filterInvariant7-filterInvariant14-filterInvariant15-filterInvariant16-variant17-variant22-variant25-variant28-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:60,10:70:85:85,0,2119:53,7,2,8
chr1	248637362	.	C	T	1472.62	PASS	AC=1;AF=0.5;AN=2;DP=5807;set=variant-variant3-variant4-variant7-variant8-filterInvariant9-filterInvariant10-variant15-variant17-variant20-variant22-variant25-variant28-filterInvariant30-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:176,65:241:99:1370,0,4952:86,90,47,18
chr1	248637416	.	G	C	2062.76	PASS	AC=1;AF=0.5;AN=2;DP=3986;set=variant-variant4-variant8-variant15-variant16-variant17-variant25-variant28-filterInvariant33-filterInvariant34-variant35-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:233,112:345:99:3961,0,9460:128,105,69,43
chr1	248637417	.	C	T	2269.88	PASS	AC=1;AF=0.5;AN=2;DP=3990;set=variant-variant4-variant8-variant15-variant16-variant17-variant25-variant28-filterInvariant33-filterInvariant34-variant35-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:234,119:353:99:4257,0,9439:130,104,74,45
chr1	248637543	.	C	T	1587.17	PASS	AC=1;AF=0.5;AN=2;DP=5908;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant15-variant17-variant20-variant22-variant25-variant28-variant30-variant34-variant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:247,89:336:99:1626,0,5819:111,136,30,59
chr1	248637685	.	T	C	183.34	PASS	AC=1;AF=0.5;AN=2;DP=580;set=variant-filterInvariant3-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant20-filterInvariant22-filterInvariant28-filterInvariant30-filterInvariant33-filterInvariant34-filterInvariant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:35,12:47:99:242,0,951:4,31,1,11
chr1	248651867	.	C	A	216.64	PASS	AC=1;AF=0.583;AN=2;DP=106;FractionInformativeReads=1;set=variant4-filterInvariant8-filterInvariant15-filterInvariant28-filterInvariant37-filterInvariant39	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:177,0,239:4,7,6,2
chr1	248652058	.	G	A	182.66	PASS	AC=1;AF=0.5;AN=2;DP=1133;set=filterInvariant3-variant7-filterInvariant8-filterInvariant9-filterInvariant15-filterInvariant17-filterInvariant20-variant21-filterInvariant22-variant25-variant30-variant34-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:60,10:70:99:239,0,3601:28,32,5,5
chr1	248652061	.	C	T	188.61	PASS	AC=1;AF=0.5;AN=2;DP=1083;FractionInformativeReads=1;set=filterInvariant3-variant7-filterInvariant8-filterInvariant9-filterInvariant15-filterInvariant17-filterInvariant20-variant21-filterInvariant22-variant25-variant30-variant34-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:60,10:70:99:239,0,3601:28,32,5,5
chr1	248652071	.	G	C	84.59	PASS	AC=1;AF=0.5;AN=2;DP=932;set=filterInvariant3-variant7-filterInvariant8-filterInvariant9-filterInvariant15-filterInvariant17-filterInvariant20-variant21-filterInvariant22-variant25-variant30-variant34-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:54,7:61:99:125,0,3454:24,30,4,3
chr1	248685253	.	T	C	3123.29	PASS	AC=2;AF=1;AN=2;DP=7063;FS=0;MQ=60;MQRankSum=0.584;ReadPosRankSum=0.793;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:5944,576,0:0,0,95,97
chr1	248722611	.	C	G	53.02	PASS	AC=2;AF=0.725;AN=2;DP=460;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant7-variant8-filterInvariant11-filterInvariant13-variant14-filterInvariant15-variant16-filterInvariant17-variant21-variant22-filterInvariant25-filterInvariant33-filterInvariant35-variant36-filterInvariant39-filterInvariant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,19:20:15:810,15,0:1,0,14,5
chr1	248722613	.	G	A	743.77	PASS	AC=1;AF=0.5;AN=2;DP=274;FractionInformativeReads=1;set=filterInvariant3-filterInvariant11-filterInvariant13-filterInvariant15-variant16-filterInvariant17-filterInvariant25-filterInvariant33-filterInvariant35-filterInvariant39-filterInvariant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,17:20:75:705,0,75:3,0,12,5
chr1	248722671	.	T	A	296.4	PASS	AC=1;AF=0.759;AN=2;DP=1188;set=filterInvariant-variant3-filterInvariant4-variant7-variant8-variant9-filterInvariant10-variant11-variant13-variant14-variant15-variant16-variant17-filterInvariant20-variant21-variant22-filterInvariant25-filterInvariant28-variant33-filterInvariant34-variant35-variant36-filterInvariant37-variant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:5,40:45:31:908,0,31:5,0,22,18
chr1	248722722	.	T	C	654.17	PASS	AC=1;AF=0.833;AN=2;DP=908;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-variant15-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,21:55:99:631,0,1119:16,18,19,2
chr1	248722723	.	G	A	169.57	PASS	AC=1;AF=0.556;AN=2;DP=275;set=variant-variant4-filterInvariant8-filterInvariant15-filterInvariant17-filterInvariant25-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,10:57:99:120,0,1795:28,19,9,1
chr1	248722739	.	G	C	1173.33	PASS	AC=1;AF=0.5;AN=2;DP=673;set=variant3-variant11-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:761,0,1361:22,11,8,14
chr1	248722752	.	A	G	994.78	PASS	AC=1;AF=0.5;AN=2;DP=722;FractionInformativeReads=1;set=variant3-variant11-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:42,19:61:99:671,0,1706:24,18,6,13
chr1	248722756	.	T	A	838.05	PASS	AC=1;AF=0.5;AN=2;DP=728;FractionInformativeReads=1;set=variant3-variant11-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:45,17:62:99:662,0,1832:25,20,5,12
chr1	248722767	.	T	C	838.05	PASS	AC=1;AF=0.5;AN=2;DP=722;set=variant3-variant11-variant15-filterInvariant16-variant17-variant25-variant33-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:49,17:66:99:563,0,2048:27,22,5,12
chr1	248722777	.	T	A	1274.98	PASS	AC=1;AF=0.621;AN=2;DP=1980;FractionInformativeReads=1;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,36:64:99:1043,0,586:15,13,15,21
chr1	248722788	.	G	T	742.03	PASS	AC=1;AF=0.5;AN=2;DP=713;FractionInformativeReads=1;set=variant3-variant11-variant15-filterInvariant16-variant17-variant25-variant33-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:52,13:65:99:389,0,2084:26,26,2,11
chr1	248722883	.	A	G	1252.76	PASS	AC=1;AF=0.615;AN=2;DP=920;FractionInformativeReads=1;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:675,0,997:6,14,5,13
chr1	248722888	.	C	G	1158.98	PASS	AC=1;AF=0.596;AN=2;DP=817;FractionInformativeReads=1;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant28-variant30-variant33-variant34-variant36-variant37-filterInvariant38-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:675,0,997:6,13,4,13
chr1	248737259	.	C	G	234.87	PASS	AC=2;AF=1;AN=2;DP=1531;FS=0;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1568,129,0:0,0,42,1
chr1	248737293	.	G	A	37.47	PASS	AC=1;AF=0.5;AN=2;DP=1774;set=filterInvariant-filterInvariant4-variant7-filterInvariant8-variant14-variant15-variant16-variant17-variant22-filterInvariant25-variant28-variant33-variant34-filterInvariant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:110,18:128:99:451,0,4569:83,27,17,1
chr1	248737294	.	C	G	37.47	PASS	AC=1;AF=0.5;AN=2;DP=1807;set=filterInvariant-filterInvariant4-variant7-filterInvariant8-variant14-variant15-variant16-variant17-variant22-filterInvariant25-variant28-variant33-variant34-filterInvariant35-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:112,19:131:99:451,0,4569:84,28,18,1
chr1	248737329	.	C	T	713.46	PASS	AC=1;AF=0.5;AN=2;DP=1892;set=variant-variant4-variant8-variant15-variant17-variant21-variant25-variant26-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,68:231:99:1284,0,4787:110,53,45,23
chr1	248737343	.	C	T	1126.48	PASS	AC=1;AF=0.525;AN=2;DP=3630;FractionInformativeReads=1;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant15-variant17-variant20-variant22-variant25-variant28-variant30-variant34-filterInvariant35-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:221,54:275:99:1658,0,9151:138,83,45,9
chr1	248737348	.	G	A	1166.94	PASS	AC=1;AF=0.521;AN=2;DP=5309;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant22-variant25-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:231,59:290:99:1698,0,9223:141,90,46,13
chr1	248737454	.	A	G	673.05	PASS	AC=1;AF=0.5;AN=2;DP=4007;set=variant-variant4-variant8-variant15-variant17-variant21-variant25-variant26-variant30-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:371,111:482:99:1618,0,9630:197,174,48,63
chr1	248737595	.	A	G	1419.43	PASS	AC=1;AF=0.542;AN=2;DP=2044;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant22-variant25-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1296,0,1767:13,45,5,41
chr1	248737664	.	C	T	262.84	PASS	AC=1;AF=0.55;AN=2;DP=708;FractionInformativeReads=1;set=variant-variant7-filterInvariant9-filterInvariant10-filterInvariant15-filterInvariant17-filterInvariant20-filterInvariant22-variant34-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:123,16:139:99:151,0,2999:72,51,0,16
chr1	248789454	.	G	C	2187.96	PASS	AC=2;AF=0.988;AN=2;DP=4658;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4819,444,0:0,0,88,60
chr1	248789504	.	T	C	3578.24	PASS	AC=2;AF=0.988;AN=2;DP=6829;MQ=60;MQRankSum=1.326;ReadPosRankSum=-1.148;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:7177,668,0:0,0,124,99
chr1	248790075	.	A	G	2114.34	PASS	AC=2;AF=1;AN=2;DP=6588;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6871,654,0:0,0,114,104
chr1	248801528	.	G	A	1513.35	PASS	AC=1;AF=0.86;AN=2;DP=663;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,28:30:99:1296,0,360:2,0,23,5
chr1	248801538	.	G	A	1936.26	PASS	AC=1;AF=0.86;AN=2;DP=841;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,34:36:99:1506,0,345:2,0,28,6
chr1	248801542	.	A	G	2146.21	PASS	AC=1;AF=0.86;AN=2;DP=910;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,37:39:99:1674,0,333:2,0,30,7
chr1	248801550	.	C	T	2314.17	PASS	AC=1;AF=0.88;AN=2;DP=1071;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,46:47:99:1929,0,106:1,0,36,10
chr1	248801556	.	C	T	2572.13	PASS	AC=1;AF=0.88;AN=2;DP=1215;FS=0;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,52:53:85:2222,0,85:1,0,40,12
chr1	248801566	.	T	G	3256.77	PASS	AC=1;AF=0.9;AN=2;DP=1429;FS=0;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,62:63:49:2726,0,49:1,0,45,17
chr1	248801592	.	C	T	3796.77	PASS	AC=1;AF=0.96;AN=2;DP=1742;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,73:75:96:3101,0,96:0,2,46,27
chr1	248801602	.	T	TCA	3922.73	PASS	AC=1;AF=0.96;AN=2;DP=1749;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,74:76:96:3101,0,96:0,2,45,29
chr1	248801610	.	G	A	3776.43	PASS	AC=1;AF=0.96;AN=2;DP=1743;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,76:78:87:3207,0,87:0,2,44,32
chr1	248801611	.	C	T	3776.43	PASS	AC=1;AF=0.96;AN=2;DP=1746;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,76:78:84:3229,0,84:0,2,44,32
chr1	248801633	.	A	G	3515.09	PASS	AC=1;AF=0.96;AN=2;DP=1703;FractionInformativeReads=1;set=variant4-variant6-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,78:80:84:3127,0,84:0,2,39,39
chr1	248801778	.	A	T	201.26	PASS	AC=1;AF=0.866;AN=2;DP=982;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant8-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:538,0,275:11,0,10,10
chr1	248801897	.	G	A	1214.52	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2749;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:270,143:413:99:2380,0,5613:143,127,79,64
chr1	248801944	.	TCAGCACG	T	2326.05	PASS	AC=1;AF=0.89;AN=2;DP=9772;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,246:370:99:9770,0,4377:50,74,106,140
chr1	248813135	.	G	A	220.3	PASS	AC=2;AF=0.964;AN=2;DP=876;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1043,78,0:0,0,22,4
chr1	248813547	.	G	C	155.83	PASS	AC=2;AF=0.959;AN=2;DP=237;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-filterInvariant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-filterInvariant38-variant39-variant40-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:294,24,0:0,0,0,8
chr1	248814052	.	T	A	736.97	PASS	AC=1;AF=0.524;AN=2;DP=4177;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,113:141:99:2867,0,270:14,14,70,43
chr1	248814080	.	A	C	1679.89	PASS	AC=2;AF=0.989;AN=2;DP=5461;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:4615,507,0:0,0,95,75
chr1	248814126	.	G	A	409.82	PASS	AC=1;AF=0.526;AN=2;DP=5178;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,159:181:18:3720,0,18:10,12,75,84
chr1	248814265	.	GAAC	G	188.63	PASS	AC=2;AF=1;AN=2;DP=138;FS=0;set=variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant18-variant22-variant24-variant25-variant26-variant28-variant30-variant32-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:34:466,34,0:0,0,1,10
chr1	248814281	.	AGTC	A	52.73	PASS	AC=2;AF=1;AN=2;DP=40;FS=0;FractionInformativeReads=1;set=variant2-variant6-variant10-variant11-variant13-variant15-variant25-variant26-variant30-variant32-variant35-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,0,7
chr1	248814285	.	G	A	151.77	PASS	AC=2;AF=1;AN=2;DP=37;FS=0;FractionInformativeReads=1;set=variant6-filterInvariant10-filterInvariant11-variant13-filterInvariant15-filterInvariant25-variant26-filterInvariant30-variant32-filterInvariant35-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,0,6
chr1	248845097	.	C	T	1031.73	PASS	AC=2;AF=0.86;AN=2;DP=9075;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7572,738,0:0,0,115,132
chr1	248845411	.	G	A	1293.74	PASS	AC=2;AF=0.849;AN=2;DP=7153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5530,517,0:0,0,82,91
chr1	248845458	.	C	T	1225.31	PASS	AC=2;AF=0.849;AN=2;DP=6258;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,160:161:99:4974,439,0:1,0,76,84
chr1	248845471	.	T	C	3429.76	PASS	AC=2;AF=0.977;AN=2;DP=6063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5019,482,0:0,0,75,86
chr1	248845499	.	A	G	3284.77	PASS	AC=2;AF=0.988;AN=2;DP=6110;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,151:152:99:4854,451,0:1,0,71,80
chr1	249110906	.	G	C	670.23	PASS	AC=2;AF=0.805;AN=2;DP=3287;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2965,288,0:0,0,51,45
chr1	249213104	.	A	G	1348.24	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=4.099;FractionInformativeReads=1;MQ=60;MQRankSum=-1.231;QD=13.09;ReadPosRankSum=-0.907;SOR=0.385;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,53:103:99:1376,0,1312:12,38,17,36
chr1	249230768	.	C	T	415.32	PASS	AC=1;AF=0.583;AN=2;DP=161;FractionInformativeReads=1;set=variant8-variant15-variant19-variant29-variant36-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:12,24:36:99:554,0,280:8,4,15,9
chr2	38938	.	A	C	2779.6	PASS	AC=1;AF=0.538;AN=2;DP=3785;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant9-variant11-variant15-variant18-variant20-variant25-variant27-variant33-variant35-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:180,172:352:99:4153,0,4223:104,76,99,73
chr2	39356	.	C	T	135.3	PASS	AC=1;AF=0.55;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant9-variant11-variant15-variant18-variant20-variant25-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:53:409,0,53:2,1,10,1
chr2	45895	.	A	G	2476.03	PASS	AC=2;AF=1;AN=2;DP=3360;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3400,291,0:0,0,56,41
chr2	218386	.	G	A	4660.11	PASS	AC=1;AF=0.583;AN=2;DP=6008;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:154,161:315:99:4734,0,4432:87,67,97,64
chr2	224919	.	A	G	278.67	PASS	AC=1;AF=0.587;AN=2;DP=1426;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,36:91:99:748,0,1415:28,27,17,19
chr2	224970	.	C	T	252.65	PASS	AC=1;AF=0.726;AN=2;DP=2304;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,29:83:99:566,0,1436:24,30,12,17
chr2	230912	.	A	C	582.19	PASS	AC=1;AF=0.583;AN=2;DP=886;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:423,0,751:19,5,12,2
chr2	233416	.	G	A	186.83	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant11-variant15-variant19-variant21-variant25-variant27-variant29-variant33-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:525,0,533:1,14,3,14
chr2	239597	.	C	G	148.09	PASS	AC=1;AF=0.591;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:99,0,286:5,4,3,2
chr2	239969	.	C	T	311.73	PASS	AC=1;AF=0.583;AN=2;DP=1506;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,22:67:99:502,0,1238:24,21,12,10
chr2	240054	.	A	G	246.09	PASS	AC=1;AF=0.726;AN=2;DP=3172;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,30:83:99:758,0,1364:23,30,16,14
chr2	240255	.	A	C	220.43	PASS	AC=2;AF=0.909;AN=2;DP=1985;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1430,123,0:0,0,20,21
chr2	240785	.	G	A	764.37	PASS	AC=1;AF=0.559;AN=2;DP=1317;MQ=60;set=variant8-variant9-variant11-variant15-variant17-variant19-variant21-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,62:105:99:1658,0,1047:21,22,30,32
chr2	242132	.	G	A	556.45	PASS	AC=1;AF=0.583;AN=2;DP=1568;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:991,0,1253:28,20,24,18
chr2	242732	.	T	TAAC	361.66	PASS	AC=1;AF=0.726;AN=2;DP=1039;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:720,0,935:15,8,14,4
chr2	242800	.	T	C	1725.45	PASS	AC=1;AF=0.597;AN=2;DP=1760;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1082,0,819:18,18,26,18
chr2	243567	.	T	TA	701.61	PASS	AC=1;AF=0.726;AN=2;DP=3096;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:804,0,1259:32,26,21,20
chr2	244568	.	AAAAG	A,AAAAGAAAG	410.16	PASS	AC=0,1;AF=0.098,0.72;AN=2;DP=728;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:22:99:6,3,11,2
chr2	253291	.	A	G	140.29	PASS	AC=1;AF=0.7;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant17-variant19-variant27	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,79:0,2,0,2
chr2	256116	.	G	T	46.72	PASS	AC=1;AF=0.632;AN=2;DP=140;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant23-variant28-variant30-variant31-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:185,0,108:2,3,5,1
chr2	260594	.	A	G	3382.66	PASS	AC=2;AF=1;AN=2;DP=4427;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3981,368,0:0,0,77,46
chr2	262553	.	T	C	356.03	PASS	AC=1;AF=0.726;AN=2;DP=1793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:567,0,441:11,7,13,6
chr2	263270	.	T	C	43.64	PASS	AC=2;AF=0.909;AN=2;DP=878;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:656,57,0:0,0,9,10
chr2	264019	.	C	A	1066.81	PASS	AC=1;AF=0.583;AN=2;DP=1948;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,64:119:99:1592,0,1270:24,31,27,37
chr2	264227	.	G	A	274.02	PASS	AC=1;AF=0.583;AN=2;DP=533;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:376,0,234:4,7,6,10
chr2	264895	.	G	C	5057.32	PASS	AC=2;AF=1;AN=2;DP=9392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:8066,747,0:0,0,144,105
chr2	271797	.	G	A	469.06	PASS	AC=1;AF=0.583;AN=2;DP=788;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:288,0,414:7,6,7,4
chr2	271998	.	CAA	CA,CAAA,C	437.47	PASS	AC=2,0,0;AF=0.43,0.244,0.07;AN=2;DP=3458;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:96:99:4,3,49,40
chr2	272203	.	C	T	965.19	PASS	AC=1;AF=0.587;AN=2;DP=3353;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,85:171:99:2182,0,1991:41,45,42,43
chr2	272840	.	G	A	2390.7	PASS	AC=1;AF=0.726;AN=2;DP=5597;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,74:172:99:1984,0,2759:45,53,32,42
chr2	272926	.	A	G	2057.02	PASS	AC=1;AF=0.726;AN=2;DP=4786;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,81:163:99:2045,0,2045:37,45,38,43
chr2	273070	.	A	G	1232.89	PASS	AC=2;AF=0.909;AN=2;DP=4491;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,102:104:99:3184,262,0:1,1,44,58
chr2	277003	.	A	G	981.35	PASS	AC=1;AF=0.583;AN=2;DP=843;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:525,0,570:14,6,15,2
chr2	277995	.	A	G	1864.43	PASS	AC=1;AF=0.536;AN=2;DP=2273;set=variant8-variant9-variant11-variant15-variant19-variant21-variant25-variant27-variant29-variant33-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,90:170:99:2068,0,1900:40,40,45,45
chr2	283231	.	A	AT	133.32	PASS	AC=2;AF=0.919;AN=2;DP=1231;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1302,132,0:0,0,15,28
chr2	286756	.	C	G	147.97	PASS	AC=1;AF=0.619;AN=2;DP=181;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant27-variant28-variant30-variant31-variant35-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:109,0,146:4,1,3,1
chr2	286812	.	G	A	296.33	PASS	AC=2;AF=0.909;AN=2;DP=994;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:816,81,0:0,0,18,9
chr2	287448	.	TAAAA	T,TA,TAA	474.57	PASS	AC=1,1,0;AF=0.372,0.512,0.012;AN=2;DP=1721;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:44:99:0,0,33,11
chr2	675831	.	G	T	1364.59	PASS	AC=2;AF=0.685;AN=2;DP=1462;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2296,209,0:0,0,23,47
chr2	676177	.	C	G,T	6102.17	PASS	AC=2,0;AF=0.756,0.026;AN=2;DP=7939;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	1/1:264:99:0,0,109,155
chr2	676457	.	G	C	1166.38	PASS	AC=2;AF=0.878;AN=2;DP=2484;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2524,192,0:0,0,41,20
chr2	676478	.	T	TGTAA	1807.39	PASS	AC=1;AF=0.866;AN=2;DP=3595;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,47:102:99:2039,0,2142:37,18,33,14
chr2	677213	.	G	A	898.44	PASS	AC=2;AF=0.866;AN=2;DP=1686;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1394,126,0:0,0,31,11
chr2	905553	.	G	C	72.18	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=35;FS=8.503;FractionInformativeReads=1;MQ=28.65;MQRankSum=1.768;QD=2.06;ReadPosRankSum=-2.192;SOR=2.882;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:30,5:35:99:100,0,1301:12,18,0,5
chr2	905581	.	C	T	277.65	PASS	AC=1;AF=0.5;AN=2;DP=137;set=filterInvariant11-filterInvariant13-variant15-filterInvariant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:207,0,153:3,9,3,10
chr2	905967	.	A	G	458.14	PASS	AC=2;AF=0.75;AN=2;DP=1382;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1589,138,0:0,0,12,34
chr2	905973	.	G	C	136.43	PASS	AC=1;AF=0.5;AN=2;DP=129;set=variant2-filterInvariant15-filterInvariant22	GT:AD:DP:GQ:PL:SB	0/1:40,6:46:99:119,0,1704:11,29,1,5
chr2	905981	.	A	G	136.43	PASS	AC=1;AF=0.5;AN=2;DP=80;FractionInformativeReads=1;set=variant2-filterInvariant15	GT:AD:DP:GQ:PL:SB	0/1:41,5:46:87:87,0,1707:11,30,1,4
chr2	946507	.	G	C	194.51	PASS	AC=1;AF=0.618;AN=2;DP=171;MQ=60;set=variant2-variant7-variant9-variant11-variant12-variant15-variant18-variant22-variant23-variant26-variant31-variant34-variant36-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,123:3,1,1,2
chr2	947006	.	T	C	308.92	PASS	AC=2;AF=1;AN=2;DP=282;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr2	1079130	.	G	A	2636.32	PASS	AC=2;AF=0.757;AN=2;DP=2305;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3636,247,0:0,0,53,27
chr2	1079132	.	G	A	2636.32	PASS	AC=2;AF=0.757;AN=2;DP=2382;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3636,247,0:0,0,54,28
chr2	1079143	.	A	G	804.84	PASS	AC=2;AF=0.805;AN=2;DP=3028;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2866,283,0:0,0,57,38
chr2	1079320	.	C	T	1059.38	PASS	AC=2;AF=0.775;AN=2;DP=2683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2633,250,0:0,0,31,53
chr2	1093965	.	G	A	3485.21	PASS	AC=1;AF=0.724;AN=2;DP=4430;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,80:139:99:2107,0,1412:32,27,39,41
chr2	1098891	.	A	G	152.99	PASS	AC=1;AF=0.708;AN=2;DP=61;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant13-variant14-variant15-variant16-variant19-variant23-variant27-variant29-variant31-variant40	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:124,0,31:0,1,2,2
chr2	1133188	.	G	GCACA	929.31	PASS	AC=1;AF=0.716;AN=2;DP=1266;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:456,0,1043:16,5,8,4
chr2	1168756	.	G	A	1103.52	PASS	AC=1;AF=0.538;AN=2;DP=3925;MQ=60;set=variant2-variant4-variant6-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,95:191:99:2078,0,2306:49,47,45,50
chr2	1168982	.	T	A	334.23	PASS	AC=1;AF=0.548;AN=2;DP=256;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant10-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:277,0,229:0,6,1,7
chr2	1204561	.	T	C	229.37	PASS	AC=1;AF=0.542;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,18:21:99:706,0,112:2,1,11,7
chr2	1204570	.	G	A	305.12	PASS	AC=1;AF=0.553;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,17:21:99:694,0,154:3,1,10,7
chr2	1204612	.	A	G	511.46	PASS	AC=1;AF=0.54;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,19:26:99:812,0,300:6,1,13,6
chr2	1204615	.	C	G	511.47	PASS	AC=1;AF=0.54;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,21:29:99:838,0,318:6,2,15,6
chr2	1204668	.	CT	C	620.3	PASS	AC=1;AF=0.54;AN=2;DP=963;set=variant2-variant4-variant6-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,31:44:99:877,0,280:10,3,21,10
chr2	1241592	.	C	T	401.36	PASS	AC=2;AF=0.989;AN=2;DP=1399;MQ=60;MQRankSum=1.042;ReadPosRankSum=-0.347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1337,111,0:0,0,30,7
chr2	1250878	.	T	C	482.51	PASS	AC=2;AF=0.729;AN=2;DP=985;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1101,93,0:0,0,23,8
chr2	1417199	.	G	A	412.42	PASS	AC=1;AF=0.593;AN=2;DP=585;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,9:32:99:179,0,560:12,11,5,4
chr2	1417244	.	A	G	44.33	PASS	AC=1;AF=0.6;AN=2;DP=730;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,11:36:99:286,0,607:12,13,7,4
chr2	1426621	.	A	G	351.75	PASS	AC=2;AF=0.721;AN=2;DP=584;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:816,57,0:0,0,19,0
chr2	1437163	.	A	C	945.06	PASS	AC=1;AF=0.571;AN=2;DP=835;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:732,0,461:12,5,18,10
chr2	1437410	.	C	T	255.13	PASS	AC=1;AF=0.714;AN=2;DP=1000;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:525,0,619:4,16,5,13
chr2	1440299	.	A	G	732.54	PASS	AC=1;AF=0.571;AN=2;DP=781;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:570,0,978:5,23,1,16
chr2	1442417	.	C	T	275.04	PASS	AC=1;AF=0.575;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:298,0,165:5,2,8,2
chr2	1442476	.	T	C	737.59	PASS	AC=1;AF=0.571;AN=2;DP=880;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:726,0,507:14,8,19,8
chr2	1442551	.	ATTTT	ATTT,A,ATT,AT	264.11	PASS	AC=0,1,0,0;AF=0.302,0.267,0.012,0.012;AN=2;DP=3817;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:93:99:26,24,25,18
chr2	1442935	.	C	T	702.01	PASS	AC=1;AF=0.571;AN=2;DP=1143;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:732,0,1022:24,13,14,16
chr2	1443068	.	A	G	644.96	PASS	AC=1;AF=0.571;AN=2;DP=979;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:866,0,784:5,22,14,21
chr2	1457364	.	A	G	1181.28	PASS	AC=2;AF=0.955;AN=2;DP=2543;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1901,195,0:0,0,39,26
chr2	1459806	.	A	G	434.7	PASS	AC=2;AF=0.955;AN=2;DP=1054;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1031,84,0:0,0,21,7
chr2	1460004	.	G	T	1975.83	PASS	AC=1;AF=0.636;AN=2;DP=3116;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,62:99:99:1502,0,1041:17,20,31,31
chr2	1460140	.	A	G	1172.29	PASS	AC=1;AF=0.636;AN=2;DP=1761;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:878,0,985:14,22,12,17
chr2	1460280	.	G	T	170.94	PASS	AC=1;AF=0.63;AN=2;DP=279;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:174,0,320:0,9,2,5
chr2	1460297	.	C	T	262.61	PASS	AC=2;AF=0.963;AN=2;DP=342;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,11:12:31:453,31,0:1,0,0,11
chr2	1481155	.	G	T	718.13	PASS	AC=1;AF=0.6;AN=2;DP=2108;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:827,0,943:16,21,16,19
chr2	1481231	.	G	C	1196.26	PASS	AC=1;AF=0.653;AN=2;DP=2488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:935,0,943:21,18,18,20
chr2	1488668	.	T	C	309.61	PASS	AC=1;AF=0.635;AN=2;DP=1051;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:666,0,581:5,16,4,18
chr2	1491497	.	T	C	476.5	PASS	AC=1;AF=0.614;AN=2;DP=1635;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,27:71:99:728,0,1337:33,11,22,5
chr2	1497442	.	A	G	481.1	PASS	AC=1;AF=0.609;AN=2;DP=1764;set=variant-variant2-variant3-variant4-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,37:81:99:909,0,1160:26,18,22,15
chr2	1497803	.	C	T	464.73	PASS	AC=1;AF=0.589;AN=2;DP=1484;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:1012,0,742:8,19,12,26
chr2	1499728	.	C	T	91.5	PASS	AC=1;AF=0.58;AN=2;DP=318;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant9-variant11-variant14-variant15-variant17-variant18-variant21-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:109,0,184:4,1,3,1
chr2	1499899	.	C	T	605.83	PASS	AC=1;AF=0.578;AN=2;DP=3511;set=variant-variant3-variant4-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,52:133:99:1037,0,2050:43,38,28,24
chr2	1499927	.	A	C	785.85	PASS	AC=1;AF=0.576;AN=2;DP=4277;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,70:166:99:1484,0,2423:50,46,36,34
chr2	1500665	.	C	T	689.7	PASS	AC=1;AF=0.603;AN=2;DP=1496;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:711,0,382:6,11,9,19
chr2	1520676	.	T	C	928.2	PASS	AC=1;AF=0.689;AN=2;DP=2728;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,40:96:99:1082,0,1442:35,21,25,15
chr2	1544147	.	A	T	170.69	PASS	AC=1;AF=0.712;AN=2;DP=451;FS=0;MQ=60;set=variant-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:203,0,480:11,5,5,3
chr2	1544196	.	A	AAAT	525.17	PASS	AC=1;AF=0.691;AN=2;DP=995;set=variant-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:696,0,1070:15,10,9,7
chr2	1544617	.	G	A	2321.05	PASS	AC=1;AF=0.611;AN=2;DP=5146;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,91:211:99:2274,0,3000:57,63,47,44
chr2	1545110	.	G	A	300.17	PASS	AC=1;AF=0.73;AN=2;DP=749;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:438,0,214:4,6,6,9
chr2	1545693	.	C	G	2104.98	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.792;QD=12.03;ReadPosRankSum=1.368;SOR=0.723;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:83,91:174:99:2133,0,1910:38,45,41,50
chr2	1546361	.	G	T	3078.47	PASS	AC=1;AF=0.55;AN=2;DP=2488;MQ=60;set=variant4-variant11-variant15-variant17-variant29-variant31-variant33-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:155,162:317:99:4281,0,4150:81,74,92,70
chr2	1546787	.	T	C	931.89	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=5.862;FractionInformativeReads=1;MQ=60;MQRankSum=0.887;QD=12.1;ReadPosRankSum=1.534;SOR=0.527;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:960,0,1269:17,26,18,16
chr2	1636938	.	CT	C,CTTT,CTT,CTTTT	602.4	PASS	AC=0,0,1,0;AF=0.174,0.105,0.256,0.012;AN=2;DP=8915;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:203:99:50,59,44,50
chr2	1637201	.	C	T	1092.03	PASS	AC=1;AF=0.729;AN=2;DP=2994;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,40:80:99:1032,0,1091:18,22,18,22
chr2	1637531	.	A	G	1103.48	PASS	AC=2;AF=0.817;AN=2;DP=3238;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2543,248,0:0,0,46,37
chr2	1637648	.	T	C	1905.15	PASS	AC=1;AF=0.722;AN=2;DP=4144;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,76:138:99:2041,0,1528:36,26,44,32
chr2	1639060	.	A	G	85.71	PASS	AC=1;AF=0.531;AN=2;DP=505;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant10-variant11-variant15-variant16-variant25-variant29-variant30-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:917,0,650:17,7,23,7
chr2	1639122	.	T	C	1251.73	PASS	AC=1;AF=0.526;AN=2;DP=1518;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant11-variant15-variant16-variant17-variant25-variant29-variant30-variant31-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1304,0,1078:29,20,30,25
chr2	1642537	.	T	C	2401.77	PASS	AC=2;AF=0.884;AN=2;DP=1907;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:3150,211,0:0,0,52,11
chr2	1642539	.	C	T	2561.5	PASS	AC=2;AF=0.884;AN=2;DP=1983;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:3175,214,0:0,0,57,13
chr2	1642545	.	C	G	2749.29	PASS	AC=2;AF=0.884;AN=2;DP=2288;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3429,237,0:0,0,62,17
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	88.73	PASS	AC=2;AF=0.833;AN=2;DP=2658;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:84:440,84,0:0,0,22,45
chr2	1647171	.	T	C	445.6	PASS	AC=2;AF=0.884;AN=2;DP=6111;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5131,527,0:0,0,106,70
chr2	1652822	.	T	G	2196.87	PASS	AC=2;AF=0.895;AN=2;DP=8688;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,222:222:99:7230,668,0:0,0,120,102
chr2	1664654	.	A	G	1171.22	PASS	AC=1;AF=0.825;AN=2;DP=3668;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,45:113:99:1188,0,1736:44,24,32,13
chr2	1667310	.	G	A	1465.25	PASS	AC=1;AF=0.769;AN=2;DP=6856;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,76:206:99:1687,0,3406:79,51,42,34
chr2	1669025	.	G	C	290.54	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.912;QD=9.37;ReadPosRankSum=-1.44;SOR=0.593;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:319,0,528:6,13,4,8
chr2	1747993	.	G	A	427.08	PASS	AC=1;AF=0.611;AN=2;DP=649;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant22-variant23-variant25-variant29-variant30-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:481,0,320:9,4,13,7
chr2	1748429	.	T	C	193.34	PASS	AC=1;AF=0.647;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant11-variant12-variant13-variant15-variant18-variant22-variant23-variant25-variant29-variant30-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:223,0,170:3,5,2,6
chr2	1748463	.	G	A	132.13	PASS	AC=1;AF=0.607;AN=2;DP=135;MQ=60;set=variant3-variant5-variant10-variant12-variant13-variant15-variant22-variant23-variant25-variant29-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:214,0,112:3,3,1,5
chr2	1793809	.	T	C	1645.76	PASS	AC=1;AF=0.559;AN=2;DP=1888;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant20-variant24-variant26-variant27-variant28-variant33-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1092,0,1732:27,41,23,28
chr2	1793988	.	AT	A	649.74	PASS	AC=1;AF=0.75;AN=2;DP=1330;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:317,0,316:6,8,7,7
chr2	1844676	.	CT	C,CTT	139.55	PASS	AC=1,0;AF=0.433,0.067;AN=2;DP=781;set=variant2-variant4-filterInvariant5-filterInvariant8-filterInvariant15-filterInvariant17-variant19-filterInvariant21-variant31-filterInvariant32-variant35-variant36-filterInvariant37-variant38-filterInvariant42	GT:DP:GQ:SB	0/1:50:99:14,23,4,9
chr2	1890070	.	C	T	377.99	PASS	AC=2;AF=0.907;AN=2;DP=653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:640,51,0:0,0,13,4
chr2	1890173	.	A	G	529.3	PASS	AC=1;AF=0.619;AN=2;DP=894;MQ=60;set=variant3-variant4-variant6-variant9-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:593,0,716:13,14,15,10
chr2	1913874	.	C	A	301.93	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant25-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:176,0,268:7,2,5,0
chr2	1926437	.	G	T	1922.77	PASS	AC=2;AF=0.966;AN=2;DP=5998;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,150:151:99:4670,440,0:0,1,73,77
chr2	1926617	.	G	A	2829.15	PASS	AC=1;AF=0.5;AN=2;DP=443;MQ=60;set=variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:124,118:242:99:2857,0,3156:55,69,61,57
chr2	1946646	.	A	C	2821.05	PASS	AC=1;AF=0.63;AN=2;DP=2369;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,74:134:99:1641,0,1224:32,28,41,33
chr2	1946914	.	A	G	658.35	PASS	AC=1;AF=0.66;AN=2;DP=1525;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,34:65:99:1114,0,911:16,15,18,16
chr2	1982915	.	GA	G	1248.35	PASS	AC=1;AF=0.5;AN=2;DP=570;MQ=60;set=variant4-variant15-variant22-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,52:110:99:1232,0,1341:30,28,25,27
chr2	1983374	.	A	C	1029.04	PASS	AC=1;AF=0.5;AN=2;DP=2079;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant14-variant15-variant18-variant22-variant23-variant26-variant33-variant34-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,73:166:99:1827,0,2351:50,43,43,30
chr2	1983619	.	A	G	416.27	PASS	AC=1;AF=0.529;AN=2;DP=984;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant14-variant15-variant18-variant22-variant23-variant25-variant26-variant33-variant34-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:1017,0,1028:13,29,8,26
chr2	3192798	.	T	C	358.5	PASS	AC=2;AF=0.898;AN=2;DP=841;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:486,51,0:0,0,11,6
chr2	3193040	.	G	A	1752.78	PASS	AC=1;AF=0.597;AN=2;DP=2864;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1225,0,1402:33,22,27,18
chr2	3196040	.	A	G	293.66	PASS	AC=2;AF=0.93;AN=2;DP=629;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:355,30,0:0,0,9,1
chr2	3200948	.	C	A	394.59	PASS	AC=2;AF=0.953;AN=2;DP=735;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:906,78,0:0,0,6,20
chr2	3211757	.	C	G	6217.6	PASS	AC=2;AF=0.977;AN=2;DP=7427;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6733,640,0:0,0,135,79
chr2	3211790	.	T	C	8749.84	PASS	AC=2;AF=0.977;AN=2;DP=10226;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,277:277:99:8599,829,0:0,0,163,114
chr2	3212105	.	A	G	2726.41	PASS	AC=2;AF=0.943;AN=2;DP=3819;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,89:90:99:3026,228,0:1,0,39,50
chr2	3212247	.	G	T	1362.24	PASS	AC=1;AF=0.692;AN=2;DP=3382;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,33:86:99:790,0,1417:29,24,15,18
chr2	3212481	.	C	T	2785.13	PASS	AC=1;AF=0.55;AN=2;DP=2745;MQ=60;set=variant-variant7-variant8-variant10-variant12-variant13-variant15-variant20-variant28-variant42	GT:AD:DP:GQ:PL:SB	0/1:174,176:350:99:4206,0,4356:90,84,97,79
chr2	3212704	.	C	A	2758.6	PASS	AC=1;AF=0.694;AN=2;DP=3834;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,67:144:99:1815,0,1871:36,41,20,47
chr2	3212817	.	C	T	743.84	PASS	AC=1;AF=0.605;AN=2;DP=719;set=variant-variant2-variant3-variant7-variant8-variant11-variant12-variant13-variant15-variant17-variant20-variant25-variant28-variant30-variant31-variant33-variant35-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:456,0,903:9,23,4,14
chr2	3217777	.	A	C	715.65	PASS	AC=2;AF=0.977;AN=2;DP=467;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:828,63,0:0,0,19,2
chr2	3217794	.	T	C	802.15	PASS	AC=2;AF=0.977;AN=2;DP=676;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:910,75,0:0,0,20,5
chr2	3217908	.	G	C	2909.18	PASS	AC=2;AF=0.977;AN=2;DP=4046;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3578,351,0:0,0,63,54
chr2	3260822	.	A	G	112.39	PASS	AC=1;AF=0.735;AN=2;DP=456;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:99:330,0,126:4,0,8,4
chr2	3277884	.	A	G	702.4	PASS	AC=1;AF=0.611;AN=2;DP=693;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:318,0,536:14,8,9,4
chr2	3277947	.	T	A	257.27	PASS	AC=1;AF=0.684;AN=2;DP=1728;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:775,0,634:17,7,17,12
chr2	3341693	.	A	C	517.77	PASS	AC=1;AF=0.5;AN=2;DP=80;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:546,0,687:18,7,14,5
chr2	3356849	.	A	G	539.43	PASS	AC=2;AF=0.679;AN=2;DP=1072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1254,90,0:0,0,28,2
chr2	3356953	.	A	T	4668.57	PASS	AC=2;AF=1;AN=2;DP=6502;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5711,581,0:0,0,121,74
chr2	3358458	.	ATTATGAAGTTAGAT	A	2704.93	PASS	AC=2;AF=1;AN=2;DP=3092;FS=0;MQRankSum=1.546;ReadPosRankSum=1.023;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3409,239,0:0,0,27,52
chr2	3383538	.	C	A,G	4311.61	PASS	AC=0,2;AF=0.171,0.632;AN=2;DP=5885;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:175:99:0,0,86,89
chr2	3383662	.	C	T	1021.43	PASS	AC=2;AF=0.639;AN=2;DP=2685;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2095,204,0:0,0,25,43
chr2	3383741	.	G	A	286.62	PASS	AC=2;AF=0.643;AN=2;DP=683;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:874,75,0:0,0,8,17
chr2	3519616	.	A	G	1242.81	PASS	AC=2;AF=0.697;AN=2;DP=911;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1247,90,0:0,0,29,1
chr2	3519839	.	A	G	1889.53	PASS	AC=2;AF=0.697;AN=2;DP=1992;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2358,218,0:0,0,26,47
chr2	3521051	.	C	T	659.84	PASS	AC=2;AF=0.854;AN=2;DP=1091;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:723,74,0:0,0,11,14
chr2	3523324	.	A	G	5032.2	PASS	AC=2;AF=0.866;AN=2;DP=5693;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5889,557,0:0,0,105,81
chr2	3599700	.	G	T	897.57	PASS	AC=1;AF=0.73;AN=2;DP=2781;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,44:87:99:968,0,1024:23,20,23,21
chr2	3605468	.	A	G	2208.25	PASS	AC=2;AF=0.738;AN=2;DP=6677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5839,546,0:0,0,71,111
chr2	3605528	.	T	G	1345.35	PASS	AC=1;AF=0.648;AN=2;DP=2494;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant30-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,36:96:99:1281,0,2319:24,36,16,20
chr2	3605538	.	A	C	1272.96	PASS	AC=1;AF=0.667;AN=2;DP=2260;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant30-variant32-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,35:90:99:1233,0,2205:23,32,15,20
chr2	3627648	.	G	C	1777.87	PASS	AC=2;AF=0.814;AN=2;DP=4665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4295,428,0:0,0,67,76
chr2	3652616	.	G	C	2132.13	PASS	AC=1;AF=0.692;AN=2;DP=3675;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,53:113:99:1042,0,1494:33,27,27,26
chr2	3653279	.	C	T	543.97	PASS	AC=1;AF=0.684;AN=2;DP=748;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:298,0,473:12,8,9,3
chr2	3653576	.	A	G	3186.37	PASS	AC=1;AF=0.684;AN=2;DP=3252;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1212,0,1114:26,12,26,16
chr2	3653844	.	T	C	4314.7	PASS	AC=1;AF=0.7;AN=2;DP=5662;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,53:130:99:1412,0,2252:26,51,15,38
chr2	3660752	.	T	C	1173.47	PASS	AC=1;AF=0.692;AN=2;DP=1704;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:458,0,624:17,8,13,2
chr2	3673648	.	G	A	1245.81	PASS	AC=1;AF=0.5;AN=2;DP=1835;MQ=60;set=variant2-variant6-variant15-variant16-variant20-variant23-variant29-variant31-variant32-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,78:169:99:1804,0,2082:43,48,38,40
chr2	3685046	.	T	C	1393.42	PASS	AC=2;AF=0.845;AN=2;DP=1947;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2094,174,0:0,0,45,13
chr2	3685074	.	A	G	1976.82	PASS	AC=2;AF=0.845;AN=2;DP=2850;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2886,249,0:0,0,61,22
chr2	3774436	.	C	T	640.97	PASS	AC=2;AF=0.989;AN=2;DP=990;FS=0;MQ=60;MQRankSum=-1.707;ReadPosRankSum=0.919;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:915,78,0:0,0,17,9
chr2	3774519	.	T	C	2508.99	PASS	AC=2;AF=0.977;AN=2;DP=2911;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2432,234,0:0,0,46,32
chr2	3800383	.	C	T	4439.52	PASS	AC=2;AF=0.708;AN=2;DP=4613;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4985,456,0:0,0,65,87
chr2	3800496	.	C	T	2720.63	PASS	AC=2;AF=0.708;AN=2;DP=3526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3630,359,0:0,0,51,69
chr2	3815250	.	A	G	1355.65	PASS	AC=2;AF=0.757;AN=2;DP=1807;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1791,168,0:0,0,37,19
chr2	3832358	.	T	C	328.63	PASS	AC=1;AF=0.779;AN=2;DP=431;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:291,0,267:8,3,8,2
chr2	3894606	.	A	C	46.12	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant15-variant22-variant35	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:267,0,419:3,4,8,0
chr2	3894611	.	A	C	40.1	PASS	AC=1;AF=0.5;AN=2;DP=111;MQ=60;set=variant5-variant7-variant8-variant15-variant22-variant26-variant35-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:307,0,220:4,6,10,0
chr2	3894616	.	T	C	63.49	PASS	AC=1;AF=0.5;AN=2;DP=110;MQ=60;set=variant5-variant7-variant8-variant15-variant22-variant26-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:247,0,729:6,6,8,0
chr2	3894620	.	A	C	91.72	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant22-variant26-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:238,0,818:7,11,7,0
chr2	4135981	.	C	T	860.78	PASS	AC=1;AF=0.677;AN=2;DP=2013;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,47:85:99:1108,0,828:19,19,25,22
chr2	4136145	.	A	G	399.82	PASS	AC=1;AF=0.63;AN=2;DP=585;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant20-variant21-variant22-variant28-variant29-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:280,0,386:5,10,2,7
chr2	5832667	.	T	C	76.45	PASS	AC=2;AF=0.872;AN=2;DP=351;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:585,48,0:0,0,11,5
chr2	5834249	.	G	GTGA	1072.75	PASS	AC=1;AF=0.528;AN=2;DP=1471;set=variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant25-variant27-variant32-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,28:75:99:914,0,1827:25,22,11,17
chr2	5834493	.	T	C	4761.62	PASS	AC=1;AF=0.5;AN=2;DP=1280;MQ=60;set=variant8-variant15-variant19	GT:AD:DP:GQ:PL:SB	0/1:257,218:475:99:5572,0,6278:108,149,85,133
chr2	5834918	.	CA	CAA,C	918.39	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=543;MQ=60;set=variant10-variant14-variant15-variant20-variant41	GT:DP:GQ:SB	0/1:126:99:52,19,38,17
chr2	5835564	.	GA	G	2433.14	PASS	AC=1;AF=0.5;AN=2;DP=3397;MQ=60;set=variant8-variant10-variant13-variant15-variant17-variant20-variant25-variant27-variant32-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,137:299:99:2994,0,3658:80,82,67,70
chr2	5835697	.	GTTT	GTT,GT,G,GTTTTT	1402.93	PASS	AC=1,0,0,0;AF=0.378,0.134,0.11,0.012;AN=2;DP=10498;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:195:99:49,38,32,76
chr2	5838030	.	G	A	3935.26	PASS	AC=1;AF=0.603;AN=2;DP=7717;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,165:334:99:4107,0,4332:90,79,92,73
chr2	5838161	.	AT	A	4460.6	PASS	AC=1;AF=0.603;AN=2;DP=9735;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,164:340:99:3336,0,3660:86,90,80,84
chr2	5838683	.	TAAA	TAA,TAAAA,T,TA	1600.76	PASS	AC=0,0,1,0;AF=0.338,0.095,0.162,0.041;AN=2;DP=4838;set=variant-variant2-variant4-variant5-filterInvariant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-filterInvariant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:167:99:61,31,47,28
chr2	5839686	.	A	G	6296.53	PASS	AC=1;AF=0.621;AN=2;DP=10809;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,224:430:99:5652,0,4728:100,106,114,110
chr2	5839811	.	T	C	3721.04	PASS	AC=1;AF=0.5;AN=2;DP=3154;MQ=60;set=variant8-variant10-variant15-variant17-variant20-variant25-variant27-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,138:250:99:3704,0,2880:48,64,51,87
chr2	5839841	.	CTTTTT	C,CTTTT,CT,CTTT,CTTTTTT	4231.49	PASS	AC=1,0,0,0,0;AF=0.33,0.216,0.068,0.011,0.011;AN=2;DP=9341;set=Intersection	GT:DP:GQ:SB	0/1:164:99:37,45,29,53
chr2	5840461	.	A	G	2693.71	PASS	AC=1;AF=0.5;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant20-variant25-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:114,96:210:99:2451,0,2934:73,41,56,40
chr2	5840564	.	AAAG	A	2107.07	PASS	AC=1;AF=0.5;AN=2;DP=3180;set=variant8-variant10-variant15-variant17-variant20-variant25-variant27-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:186,103:289:99:1789,0,7480:99,87,47,56
chr2	6790537	.	A	G	3095.41	PASS	AC=2;AF=0.643;AN=2;DP=3571;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5409,556,0:0,0,88,98
chr2	6988669	.	T	C	2683.49	PASS	AC=1;AF=0.791;AN=2;DP=2950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,51:74:99:1482,0,685:12,11,27,24
chr2	7001233	.	ACG	A	1563.96	PASS	AC=2;AF=0.989;AN=2;DP=1308;MQRankSum=1.085;ReadPosRankSum=2.275;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1784,123,0:0,0,30,11
chr2	7001249	.	ACACACACACC	A	780.38	PASS	AC=1;AF=0.917;AN=2;DP=1536;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:522,0,340:10,4,13,7
chr2	7001251	.	ACACACACC	A	423.24	PASS	AC=1;AF=0.5;AN=2;DP=173;set=variant3-variant8-variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:340,0,522:13,7,10,4
chr2	7003879	.	G	A	587.07	PASS	AC=2;AF=1;AN=2;DP=480;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:258,18,0:0,0,0,6
chr2	7005069	.	C	T	3129.09	PASS	AC=2;AF=0.989;AN=2;DP=5514;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5305,534,0:0,0,111,68
chr2	7005369	.	A	G	4581.57	PASS	AC=2;AF=1;AN=2;DP=7405;FS=0;MQ=60;MQRankSum=1.665;ReadPosRankSum=0.977;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7005,718,0:0,0,111,129
chr2	7005992	.	C	T	7007.48	PASS	AC=2;AF=0.989;AN=2;DP=10448;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,275:275:99:7790,819,0:0,0,139,136
chr2	7017903	.	A	G	2527.57	PASS	AC=2;AF=0.989;AN=2;DP=4289;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3664,383,0:0,0,68,60
chr2	7019079	.	A	G	1699.81	PASS	AC=2;AF=0.989;AN=2;DP=3337;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2880,281,0:0,0,58,36
chr2	7027323	.	T	A	2025.83	PASS	AC=2;AF=0.837;AN=2;DP=4033;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3406,338,0:0,0,43,70
chr2	7036472	.	A	T	3018.04	PASS	AC=2;AF=0.744;AN=2;DP=7660;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:8123,702,0:0,0,115,119
chr2	7036663	.	C	CTT,CT	3445.28	PASS	AC=2,0;AF=0.487,0.256;AN=2;DP=10285;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:209:99:4,5,76,124
chr2	7036678	.	C	T	4403.17	PASS	AC=2;AF=0.744;AN=2;DP=8534;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:9805,674,0:0,0,73,148
chr2	7036811	.	C	T	944.51	PASS	AC=2;AF=0.711;AN=2;DP=2599;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2836,263,0:0,0,37,51
chr2	7036838	.	G	C	766.93	PASS	AC=2;AF=0.711;AN=2;DP=2464;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2713,258,0:0,0,41,45
chr2	7037067	.	G	T	748.35	PASS	AC=2;AF=0.744;AN=2;DP=2378;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3041,205,0:0,0,36,31
chr2	7037068	.	C	T	748.35	PASS	AC=2;AF=0.744;AN=2;DP=2392;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3041,205,0:0,0,37,31
chr2	7037174	.	A	T	907.38	PASS	AC=2;AF=0.744;AN=2;DP=2877;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2804,251,0:0,0,44,40
chr2	7038125	.	CAA	CA,CAAA,C,CAAAA,CAAAAA	271.14	PASS	AC=1,0,0,0,0;AF=0.3,0.129,0.029,0.057,0.014;AN=2;DP=3500;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-filterInvariant23-filterInvariant26-variant27-variant28-variant29-variant32-filterInvariant33-variant34-variant35-variant38-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:99:99:33,25,38,3
chr2	7046272	.	TACACACACACACACACAC	T,TACACACACACACACAC,TACACACACACAC,TACACACACAC,TACACACACACACAC,TACACAC	792.35	PASS	AC=0,0,0,0,1,0;AF=0.221,0.105,0.279,0.012,0.244,0.012;AN=2;DP=1082;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:31:99:13,5,10,3
chr2	7050483	.	ATGTGTGTG	A,ATGTGTGTGTGTGTG,ATGTGTGTGTGTG,ATGTGTG,ATGTGTGTGTGTGTGTG,ATGTGTGTGTG	925.59	PASS	AC=0,0,0,1,0,0;AF=0.202,0.31,0.012,0.06,0.036,0.06;AN=2;DP=2728;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:52:99:11,29,2,10
chr2	7057663	.	G	A	133.91	PASS	AC=1;AF=0.583;AN=2;DP=687;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant22-variant24-variant25-variant30-variant31-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:594,0,864:19,19,16,11
chr2	7057885	.	G	T	170.71	PASS	AC=1;AF=0.556;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant22-variant24-variant25-variant30-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:84:84,0,118:3,2,0,4
chr2	7076975	.	AGTGT	AGTGTGTGTGTGTGTGT,AGTGTGTGT,AGTGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGT,AGT,A,AGTGTGTGTGTGT	652.93	PASS	AC=0,2,0,0,0,0,0,0;AF=0.036,0.298,0.226,0.071,0.143,0.012,0.012,0.012;AN=2;DP=1412;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/2:18:13:1,0,9,8
chr2	7130516	.	TACACACACACACACAC	TAC,TACACACACAC,TACAC,T,TACACACACACACACACAC,TACACACACACAC,TACACACAC,TACACACACACACACACACACAC,TACACACACACACACACACAC	466.86	PASS	AC=0,1,0,0,0,0,0,0,0;AF=0.08,0.12,0.14,0.04,0.04,0.18,0.06,0.04,0.04;AN=2;DP=571;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant40-variant42-variant43	GT:DP:GQ:SB	0/2:11:99:1,5,0,5
chr2	7130556	.	CACACACACACAG	C	384.92	PASS	AC=1;AF=0.667;AN=2;DP=64;set=variant5-variant14-variant15-variant17-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:205,0,192:0,5,1,5
chr2	7137067	.	A	G	2900.61	PASS	AC=1;AF=0.817;AN=2;DP=3978;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,46:110:99:1042,0,1732:35,29,21,25
chr2	7154632	.	T	C	4003.83	PASS	AC=2;AF=1;AN=2;DP=7006;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5672,548,0:0,0,101,82
chr2	7164483	.	C	T	879.81	PASS	AC=1;AF=0.528;AN=2;DP=897;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant13-variant15-variant18-variant19-variant21-variant23-variant28-variant32-variant34-variant35-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:492,0,843:21,11,12,10
chr2	7170388	.	CTGTGTGTGTGTGTGTG	CTGTGTGTGTG,CTGTG,CTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTG,C,CTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTG	409.88	PASS	AC=0,1,0,0,0,0,0,0,0,0,0;AF=0.282,0.09,0.038,0.077,0.038,0.038,0.064,0.038,0.026,0.013,0.013;AN=2;DP=3138;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:40:99:3,13,5,19
chr2	7181478	.	C	T	6069.85	PASS	AC=1;AF=0.5;AN=2;DP=3416;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant21-variant23-variant37	GT:AD:DP:GQ:PL:SB	0/1:273,213:486:99:7988,0,14493:123,150,99,114
chr2	7181486	.	A	G	7096.89	PASS	AC=1;AF=0.605;AN=2;DP=16726;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:274,214:488:99:8012,0,14496:125,149,100,114
chr2	7182177	.	G	A	1318.95	PASS	AC=1;AF=0.641;AN=2;DP=3036;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,56:104:99:1639,0,1449:31,17,34,22
chr2	7184419	.	T	A	362.07	PASS	AC=1;AF=0.5;AN=2;DP=127;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant21-variant23-variant37	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:353,0,245:1,7,3,8
chr2	7187199	.	A	G	1482.52	PASS	AC=1;AF=0.5;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant21-variant23-variant37	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:1263,0,1232:15,7,19,11
chr2	7187209	.	C	G	1601	PASS	AC=1;AF=0.5;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant21-variant23-variant37	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:1295,0,1250:16,8,21,12
chr2	7187397	.	CTA	C	1579.5	PASS	AC=1;AF=0.5;AN=2;DP=594;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant21-variant23-variant37	GT:AD:DP:GQ:PL:SB	0/1:30,55:85:99:2112,0,1121:9,21,21,34
chr2	7208060	.	C	A	412.63	PASS	AC=1;AF=0.603;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:53:205,0,53:2,0,5,1
chr2	7243449	.	AGTGTGTGT	AGT,AGTGT,AGTGTGT,AGTGTGTGTGT,A	1057.25	PASS	AC=1,0,0,0,0;AF=0.593,0.186,0.035,0.012,0.012;AN=2;DP=3079;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:85:99:22,17,30,16
chr2	7386160	.	C	T	481.42	PASS	AC=1;AF=0.5;AN=2;DP=547;MQ=60;set=variant-variant10-variant11-variant15-variant20-variant27-variant31-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:824,0,994:25,8,23,7
chr2	7403641	.	TACACACACAC	TACACACACACACACAC,TACACACACACAC,TACACACACACACAC,T,TACACACACACACACACAC	643.8	PASS	AC=1,1,0,0,0;AF=0.293,0.451,0.049,0.012,0.012;AN=2;DP=2256;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/1:58:99:1,1,36,20
chr2	7421557	.	C	G	466.05	PASS	AC=1;AF=0.768;AN=2;DP=1139;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:527,0,863:20,6,15,2
chr2	7421705	.	C	T	1962.73	PASS	AC=1;AF=0.5;AN=2;DP=161;FS=6.795;FractionInformativeReads=1;MQ=60;MQRankSum=0.655;QD=12.19;ReadPosRankSum=1.136;SOR=0.474;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:85,76:161:99:1991,0,2063:35,50,39,37
chr2	7471480	.	TCACA	TCA,TCTCACACA,TCACACACACACACA,TCACACACACA,TCACACACACACA,TCACACA,TCTCACACACACA,T,TCACACACA	47.12	PASS	AC=0,0,0,0,0,0,2,0,0;AF=0.053,0.132,0.013,0.053,0.211,0.066,0.026,0.013,0.039;AN=2;DP=1224;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	7/7:25:15:2,1,16,6
chr2	7471732	.	G	A	206.9	PASS	AC=2;AF=0.617;AN=2;DP=410;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:488,36,0:0,0,1,11
chr2	7540646	.	C	CA	1654.92	PASS	AC=2;AF=0.725;AN=2;DP=3824;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:4020,340,0:0,0,57,56
chr2	7540695	.	C	G	1058.37	PASS	AC=1;AF=0.689;AN=2;DP=3078;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,53:95:99:1241,0,960:17,25,25,28
chr2	7540784	.	T	C	347.26	PASS	AC=1;AF=0.689;AN=2;DP=723;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:80:530,0,80:1,3,2,13
chr2	7594516	.	G	A	6250.85	PASS	AC=1;AF=0.545;AN=2;DP=3196;MQ=60;set=variant-variant5-variant9-variant12-variant14-variant15-variant17-variant18-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,100:188:99:2340,0,2229:55,33,55,45
chr2	8818893	.	T	G	84.1	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant15-variant17-variant18-variant24-variant28-variant32-variant33-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:300,0,178:7,0,9,2
chr2	8819143	.	GCCA	G	3553.68	PASS	AC=1;AF=0.909;AN=2;DP=4812;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,60:118:99:1793,0,2168:37,21,35,25
chr2	8819146	.	A	G	1192.17	PASS	AC=1;AF=0.5;AN=2;DP=903;MQ=60;set=variant8-variant10-variant15-variant17-variant18-variant24-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1234,0,1794:35,25,37,21
chr2	8822892	.	CAAAAAAAAAAAA	CAAAAAAAAAAA,CAAAAAAAAA,C,CAAAAAAAAAA	293.77	PASS	AC=0,0,1,0;AF=0.278,0.139,0.083,0.028;AN=2;DP=1589;set=variant-filterInvariant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/3:41:99:18,9,12,2
chr2	8822912	.	A	C,AC	1749.96	PASS	AC=1,0;AF=0.891,0.016;AN=2;DP=1874;set=variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:53:99:19,7,18,9
chr2	8824642	.	T	C	381.57	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.83;QD=8.12;ReadPosRankSum=0.72;SOR=0.634;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:410,0,888:12,18,7,10
chr2	8866844	.	C	G	335.44	PASS	AC=1;AF=0.575;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant31-variant35-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:159,0,74:2,1,3,1
chr2	8870814	.	A	G	3155.51	PASS	AC=2;AF=0.989;AN=2;DP=3763;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3790,362,0:0,0,52,69
chr2	8871342	.	C	A	1739.66	PASS	AC=1;AF=0.575;AN=2;DP=3365;set=variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant31-variant35-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,92:197:99:2404,0,2841:54,51,49,43
chr2	8887910	.	A	T	68.21	PASS	AC=1;AF=0.639;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:180,0,342:9,1,5,2
chr2	8890179	.	G	A	872.02	PASS	AC=1;AF=0.5;AN=2;DP=579;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant15-variant23-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:43,59:102:99:1667,0,1170:30,13,41,18
chr2	8898036	.	A	G	386.18	PASS	AC=1;AF=0.575;AN=2;DP=370;set=variant4-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant31-variant35-variant36-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:331,0,373:0,10,0,9
chr2	8910736	.	GTT	GTTT,GT,G	60.73	PASS	AC=0,1,0;AF=0.105,0.368,0.026;AN=2;DP=255;MQ=60;set=variant3-variant4-variant7-variant10-variant14-variant15-variant16-variant17-variant19-variant20-variant22-filterInvariant24-variant28-variant33-variant34-variant35-variant36-variant40-variant42	GT:DP:GQ:SB	0/2:12:87:5,0,7,0
chr2	8910987	.	A	T	1260.94	PASS	AC=2;AF=1;AN=2;DP=2385;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1638,162,0:0,0,18,36
chr2	8911010	.	T	C	427	PASS	AC=1;AF=0.649;AN=2;DP=1421;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:559,0,359:4,10,8,15
chr2	8916847	.	A	T	1863.52	PASS	AC=2;AF=0.989;AN=2;DP=2353;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1563,140,0:0,0,35,12
chr2	8943291	.	G	A	413.33	PASS	AC=2;AF=1;AN=2;DP=528;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:274,21,0:0,0,1,6
chr2	8946568	.	G	T	43.84	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant15-variant23-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:270,0,195:3,5,0,7
chr2	8977487	.	C	T	468.12	PASS	AC=2;AF=0.609;AN=2;DP=430;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant30-variant34-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:915,83,0:0,0,17,11
chr2	8993007	.	G	A	2693.21	PASS	AC=1;AF=0.5;AN=2;DP=410;FS=0;MQ=60;set=variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:123,116:239:99:2721,0,3139:47,76,44,72
chr2	8993342	.	C	T	1666.53	PASS	AC=1;AF=0.55;AN=2;DP=879;MQ=60;set=variant-variant6-variant8-variant11-variant15-variant22-variant33-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:1042,0,1577:32,17,27,12
chr2	8993505	.	A	C	4359.89	PASS	AC=2;AF=0.588;AN=2;DP=4998;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant11-variant15-variant17-variant20-variant22-variant23-variant33-variant37-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,346:347:99:10395,994,0:1,0,178,168
chr2	8995712	.	G	A	2484.24	PASS	AC=1;AF=0.5;AN=2;DP=1967;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant9-variant15-variant17-variant20-variant23-variant33-variant42	GT:AD:DP:GQ:PL:SB	0/1:147,135:282:99:3120,0,3615:84,63,82,53
chr2	8996163	.	T	A	4392.9	PASS	AC=1;AF=0.5;AN=2;DP=2180;MQ=60;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:162,150:312:99:3691,0,4053:79,83,82,68
chr2	8996240	.	C	CA	4222.05	PASS	AC=1;AF=0.5;AN=2;DP=2247;MQ=60;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:146,156:302:99:4960,0,4509:65,81,78,78
chr2	8996323	.	G	A	3949.71	PASS	AC=1;AF=0.538;AN=2;DP=3748;MQ=60;set=variant-variant6-variant8-variant14-variant15-variant18-variant19-variant22-variant25-variant33-variant34-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:151,151:302:99:5910,0,5827:82,69,71,80
chr2	8996326	.	C	T	3916.99	PASS	AC=1;AF=0.567;AN=2;DP=4292;MQ=60;set=variant-variant6-variant8-variant11-variant14-variant15-variant18-variant19-variant22-variant25-variant33-variant34-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:150,152:302:99:5910,0,5827:81,69,71,81
chr2	8996444	.	C	A	1413	PASS	AC=1;AF=0.5;AN=2;DP=1521;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:112,79:191:99:1539,0,3014:61,51,36,43
chr2	8996746	.	A	G	387.97	PASS	AC=1;AF=0.567;AN=2;DP=477;MQ=60;set=variant-variant6-variant8-variant11-variant14-variant15-variant18-variant19-variant22-variant25-variant33-variant34-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:1139,0,641:3,17,1,29
chr2	8996878	.	A	T	163.47	PASS	AC=1;AF=0.583;AN=2;DP=109;set=variant-variant6-variant8-variant11-variant14-variant15-variant19-variant25-variant33-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:118,0,107:3,0,1,3
chr2	8998624	.	A	G	3363.17	PASS	AC=2;AF=0.989;AN=2;DP=4547;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3532,329,0:0,0,54,56
chr2	8998775	.	CA	C,CAA	907.97	PASS	AC=1,0;AF=0.458,0.083;AN=2;DP=835;MQ=60;set=variant-variant6-variant8-filterInvariant13-variant15-variant21-variant22-filterInvariant31-variant33-variant37-variant39-variant43	GT:DP:GQ:SB	0/1:62:99:18,11,11,22
chr2	8998871	.	T	C	1302.15	PASS	AC=1;AF=0.5;AN=2;DP=689;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1058,0,1326:25,25,23,22
chr2	9022603	.	G	A	1219.06	PASS	AC=1;AF=0.5;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant20-variant33	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1361,0,1480:33,22,32,16
chr2	9028358	.	A	G	390.02	PASS	AC=1;AF=0.55;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant11-variant15-variant22-variant33-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:484,0,417:6,10,7,12
chr2	9083250	.	T	C	396.86	PASS	AC=1;AF=0.5;AN=2;DP=274;MQ=60;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:515,0,485:11,8,13,9
chr2	9083423	.	G	A	345.35	PASS	AC=1;AF=0.5;AN=2;DP=232;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:447,0,493:6,14,7,13
chr2	9114543	.	C	T	871.18	PASS	AC=1;AF=0.5;AN=2;DP=662;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:1062,0,1411:28,23,27,20
chr2	9114764	.	T	G	679.74	PASS	AC=1;AF=0.545;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant11-variant15-variant18-variant22-variant33-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1262,0,1393:17,37,17,32
chr2	9143644	.	C	A	406.4	PASS	AC=1;AF=0.5;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant15-variant22-variant33-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:918,0,850:20,12,23,16
chr2	9419411	.	G	A	4421.13	PASS	AC=1;AF=0.833;AN=2;DP=3845;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,52:141:99:1867,0,5043:51,38,34,18
chr2	9419415	.	C	T	4457.88	PASS	AC=1;AF=0.737;AN=2;DP=3637;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,51:151:99:1830,0,5178:56,44,33,18
chr2	9463454	.	C	T	3358.72	PASS	AC=2;AF=0.769;AN=2;DP=4600;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4156,433,0:0,0,58,87
chr2	9484542	.	C	T	546.22	PASS	AC=2;AF=0.977;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:53:626,53,0:0,0,16,2
chr2	9484561	.	TAAAA	T	1042.73	PASS	AC=2;AF=0.977;AN=2;DP=816;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1152,78,0:0,0,21,5
chr2	9491017	.	C	T	2381.6	PASS	AC=2;AF=0.989;AN=2;DP=2480;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2058,168,0:0,0,10,46
chr2	9496291	.	T	C	2164.62	PASS	AC=1;AF=0.765;AN=2;DP=5651;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,88:230:99:1938,0,3779:61,81,36,52
chr2	9514917	.	C	T	568.03	PASS	AC=1;AF=0.575;AN=2;DP=1093;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,25:62:99:499,0,992:23,14,15,10
chr2	9528536	.	G	C	2238.18	PASS	AC=1;AF=0.64;AN=2;DP=5125;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:132,108:240:99:2648,0,2955:70,62,56,52
chr2	9543852	.	G	A	2321.19	PASS	AC=1;AF=0.567;AN=2;DP=3223;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,134:235:99:3747,0,2776:61,40,78,56
chr2	9546030	.	C	T	7208.38	PASS	AC=2;AF=0.86;AN=2;DP=8706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7392,719,0:0,0,98,142
chr2	9546208	.	G	A	271.41	PASS	AC=2;AF=0.583;AN=2;DP=334;set=variant2-variant4-variant7-variant11-variant12-variant13-variant15-variant16-variant20-variant22-variant26-variant28-variant29-variant30-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,21:22:20:709,20,0:0,1,7,14
chr2	9546245	.	C	A	100.75	PASS	AC=1;AF=0.694;AN=2;DP=196;set=variant2-variant12-variant15-variant16-variant17-variant20-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant34-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:49:195,0,49:3,6,0,5
chr2	9546690	.	C	T	2110.25	PASS	AC=1;AF=0.654;AN=2;DP=2686;set=variant2-variant4-variant6-variant15-variant16-variant21-variant26-variant28-variant29-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,111:236:99:2887,0,3474:71,54,66,45
chr2	9546805	.	C	T	5240.15	PASS	AC=1;AF=0.528;AN=2;DP=7637;set=variant2-variant4-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:269,248:517:99:5891,0,6682:148,121,131,117
chr2	9547171	.	G	A	1276.48	PASS	AC=2;AF=0.712;AN=2;DP=5126;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5712,544,0:0,0,69,113
chr2	9547363	.	C	A	503.63	PASS	AC=2;AF=0.735;AN=2;DP=1741;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1843,162,0:0,0,34,20
chr2	9548026	.	T	TG	168.17	PASS	AC=2;AF=0.75;AN=2;DP=319;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:26:237,26,0:0,0,9,0
chr2	9552379	.	C	T	312.44	PASS	AC=1;AF=0.611;AN=2;DP=641;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:554,0,1002:12,5,11,3
chr2	9552383	.	A	AT	512.81	PASS	AC=1;AF=0.611;AN=2;DP=685;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:577,0,999:13,6,12,4
chr2	9554075	.	T	G	235.3	PASS	AC=2;AF=0.788;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,7,0
chr2	9554255	.	G	A	2727.78	PASS	AC=2;AF=0.77;AN=2;DP=2897;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2874,293,0:0,0,55,43
chr2	9554280	.	A	T	1042.97	PASS	AC=1;AF=0.611;AN=2;DP=2457;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,48:99:99:1173,0,1240:24,27,30,18
chr2	9554461	.	C	A	1971.01	PASS	AC=2;AF=0.764;AN=2;DP=1925;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1999,180,0:0,0,22,38
chr2	9558905	.	CTT	CTTT,CT,C	62.37	PASS	AC=1,0,0;AF=0.216,0.284,0.014;AN=2;DP=2378;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant18-filterInvariant19-variant21-variant22-variant23-variant26-variant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant34-variant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:44:99:8,23,3,10
chr2	9560346	.	A	G	49.73	PASS	AC=2;AF=0.75;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant16-variant20-variant26-variant28-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:121,12,0:0,0,2,2
chr2	9563307	.	CGT	C	1852.79	PASS	AC=2;AF=0.764;AN=2;DP=1363;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1346,90,0:0,0,15,15
chr2	9564196	.	G	GA	475.55	PASS	AC=1;AF=0.611;AN=2;DP=1666;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,40:83:99:860,0,929:20,23,20,20
chr2	9564534	.	C	T	547.71	PASS	AC=1;AF=0.567;AN=2;DP=755;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,36:83:99:1120,0,1320:26,21,24,12
chr2	9564823	.	T	C	1281.13	PASS	AC=1;AF=0.567;AN=2;DP=1770;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,66:145:99:1684,0,2014:33,46,28,38
chr2	9565123	.	A	G	359.61	PASS	AC=2;AF=0.767;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:407,36,0:0,0,3,9
chr2	9569972	.	A	T	2304.29	PASS	AC=2;AF=0.764;AN=2;DP=3059;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3347,339,0:0,0,70,44
chr2	9571054	.	C	T	939.86	PASS	AC=2;AF=0.764;AN=2;DP=843;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:826,69,0:0,0,6,17
chr2	9572888	.	A	T	93.19	PASS	AC=1;AF=0.654;AN=2;DP=433;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:234,0,185:1,5,3,6
chr2	9576553	.	T	C	450.21	PASS	AC=2;AF=0.764;AN=2;DP=833;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:676,51,0:0,0,3,14
chr2	9580540	.	G	GT	995.05	PASS	AC=2;AF=0.764;AN=2;DP=1060;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:960,81,0:0,0,20,7
chr2	9583822	.	A	AG	1997.13	PASS	AC=1;AF=0.567;AN=2;DP=2197;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,70:160:99:1825,0,2502:41,49,26,44
chr2	9583922	.	A	G	930.55	PASS	AC=2;AF=0.75;AN=2;DP=1465;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1506,126,0:0,0,9,33
chr2	9597276	.	ATGTGTGTGTGTGTG	ATGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTG,ATGTGTGTGTG,A,ATGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTG	70.13	PASS	AC=1,0,0,0,0,0,0,0,0;AF=0.21,0.081,0.113,0.129,0.016,0.016,0.016,0.016,0.016;AN=2;DP=1176;set=variant-variant2-variant3-variant6-variant9-filterInvariant10-variant13-variant14-variant15-filterInvariant16-variant18-variant19-filterInvariant20-variant21-variant25-variant26-variant28-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:17:99:2,7,1,7
chr2	9613289	.	T	C	4877.43	PASS	AC=2;AF=0.75;AN=2;DP=5950;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,235:235:99:7044,703,0:0,0,90,145
chr2	9613328	.	G	A	3117.63	PASS	AC=2;AF=0.736;AN=2;DP=3685;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,140:141:99:4383,410,0:0,1,43,97
chr2	9614523	.	G	A	1284.69	PASS	AC=2;AF=0.768;AN=2;DP=5127;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3393,332,0:0,0,64,47
chr2	9614667	.	GGCCCC	GGCCCCGCCCC,G	2347.45	PASS	AC=1,0;AF=0.528,0.028;AN=2;DP=2427;set=variant2-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant26-variant27-variant28-variant29-variant30-variant34-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:133:99:25,34,33,41
chr2	9615556	.	T	C	903.83	PASS	AC=2;AF=0.75;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:1002,72,0:0,0,1,23
chr2	9616035	.	A	G	1290.19	PASS	AC=2;AF=0.729;AN=2;DP=947;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1121,102,0:0,0,24,10
chr2	9616301	.	TAGG	T	453.73	PASS	AC=2;AF=0.758;AN=2;DP=483;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:937,63,0:0,0,4,17
chr2	9624794	.	T	A	358.73	PASS	AC=2;AF=0.636;AN=2;DP=1284;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1327,114,0:0,0,10,28
chr2	9629286	.	T	TTTG	8638.76	PASS	AC=1;AF=0.565;AN=2;DP=3921;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:78,94:172:99:2186,0,1941:35,43,47,47
chr2	9629298	.	G	GTTC	2253.18	PASS	AC=1;AF=0.571;AN=2;DP=2235;MQ=60;set=variant2-variant11-variant12-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,79:178:99:1973,0,2371:50,49,36,43
chr2	9629367	.	T	G	799.48	PASS	AC=2;AF=0.632;AN=2;DP=3425;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3511,332,0:0,0,42,69
chr2	9629731	.	T	C	616.53	PASS	AC=1;AF=0.567;AN=2;DP=666;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant12-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:966,0,968:21,18,25,14
chr2	9629854	.	CAAAAAAA	CAAAAAAAA,CAA,CA,CAAAAAA,CAAAA,CAAAAA,CAAA,C	302.13	PASS	AC=0,0,1,0,1,0,0,0;AF=0.014,0.111,0.069,0.083,0.097,0.111,0.111,0.028;AN=2;DP=4219;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/5:131:99:6,14,82,29
chr2	9629943	.	T	TA	2214.74	PASS	AC=2;AF=0.708;AN=2;DP=8063;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,265:266:99:7558,773,0:0,1,118,147
chr2	9630016	.	T	C	3563.01	PASS	AC=2;AF=0.636;AN=2;DP=8713;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,313:313:99:9595,938,0:0,0,148,165
chr2	9630231	.	C	T	1895.97	PASS	AC=2;AF=0.722;AN=2;DP=6557;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6031,599,0:0,0,100,100
chr2	9630244	.	AT	A	2188.41	PASS	AC=2;AF=0.708;AN=2;DP=6303;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:6531,551,0:0,0,85,98
chr2	9631340	.	T	C	412.38	PASS	AC=2;AF=0.636;AN=2;DP=1646;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1598,150,0:0,0,18,32
chr2	9633137	.	T	G	848.43	PASS	AC=2;AF=0.722;AN=2;DP=3408;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3309,324,0:0,0,51,57
chr2	9634856	.	A	G	1017.85	PASS	AC=2;AF=0.722;AN=2;DP=2746;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2324,234,0:0,0,40,38
chr2	9637403	.	A	G	983.12	PASS	AC=1;AF=0.567;AN=2;DP=1546;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,74:129:99:1924,0,1469:23,32,28,46
chr2	9642478	.	C	T	129.74	PASS	AC=2;AF=0.641;AN=2;DP=541;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:774,69,0:0,0,6,17
chr2	9650350	.	C	CATAA	753.27	PASS	AC=2;AF=0.632;AN=2;DP=2289;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:4115,289,0:0,0,30,66
chr2	9661184	.	T	C	344.88	PASS	AC=2;AF=0.764;AN=2;DP=652;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:530,39,0:0,0,12,1
chr2	9661775	.	G	A	1034.87	PASS	AC=1;AF=0.563;AN=2;DP=1605;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,64:146:99:1535,0,1817:47,35,39,25
chr2	9661801	.	G	T	1497.05	PASS	AC=1;AF=0.567;AN=2;DP=1841;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,75:170:99:1754,0,2336:54,41,45,30
chr2	9661969	.	T	TCTTCCCTGCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGC	3020.68	PASS	AC=0,0,1,0,0,0;AF=0.261,0.087,0.152,0.087,0.022,0.022;AN=2;DP=1452;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:DP:GQ:SB	0/3:44:99:12,14,5,13
chr2	9661970	.	C	CT	1293.69	PASS	AC=1;AF=0.559;AN=2;DP=1159;set=variant2-variant3-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:1017,0,793:8,13,12,14
chr2	9661972	.	G	C	1302.74	PASS	AC=1;AF=0.559;AN=2;DP=1123;set=variant2-variant3-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:1017,0,793:8,12,12,14
chr2	9662210	.	G	A	4177.25	PASS	AC=2;AF=0.764;AN=2;DP=10437;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,367:367:99:11305,1098,0:0,0,211,156
chr2	9662410	.	T	C	10524.8	PASS	AC=1;AF=0.571;AN=2;DP=5701;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:166,173:339:99:4372,0,4369:71,95,77,96
chr2	9667751	.	T	C	130.7	PASS	AC=1;AF=0.607;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:254,0,220:5,1,7,2
chr2	9695888	.	G	T	930.08	PASS	AC=1;AF=0.567;AN=2;DP=1278;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,55:99:99:1506,0,991:16,28,16,39
chr2	9695906	.	A	G	617.1	PASS	AC=2;AF=0.77;AN=2;DP=2762;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2691,252,0:0,0,29,55
chr2	9727657	.	C	T	702.29	PASS	AC=1;AF=0.5;AN=2;DP=630;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant11-variant15-variant16-variant18-variant20-variant22-variant31-variant34-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,18:51:99:350,0,845:17,16,9,9
chr2	9770589	.	G	GCGGGGC	4479.84	PASS	AC=1;AF=0.54;AN=2;DP=8130;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant33-variant35-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,134:301:99:5025,0,6989:80,87,57,77
chr2	9771200	.	C	G	1243.13	PASS	AC=1;AF=0.574;AN=2;DP=2822;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,56:125:99:1266,0,1709:29,40,25,31
chr2	9981672	.	T	C	281.51	PASS	AC=1;AF=0.575;AN=2;DP=768;FractionInformativeReads=1;set=variant-variant2-variant6-variant8-variant12-variant13-variant15-variant18-variant19-variant23-variant24-variant26-variant29-variant30-variant31-variant32-variant35-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:836,0,779:21,7,23,3
chr2	9983591	.	A	AG	4401.86	PASS	AC=2;AF=1;AN=2;DP=6523;FS=0;MQ=60;MQRankSum=-1.241;ReadPosRankSum=-1.05;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:7087,575,0:0,0,82,109
chr2	9983686	.	G	T	909.1	PASS	AC=1;AF=0.691;AN=2;DP=2742;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,40:108:99:921,0,1689:28,40,16,24
chr2	9983716	.	A	C	1572.85	PASS	AC=2;AF=1;AN=2;DP=2726;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,78:79:99:2383,203,0:1,0,31,47
chr2	9985341	.	TC	T	1303.54	PASS	AC=1;AF=0.563;AN=2;DP=1601;MQ=60;set=variant-variant2-variant6-variant12-variant13-variant15-variant18-variant19-variant23-variant24-variant26-variant29-variant30-variant32-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:60,44:104:99:1257,0,1823:30,30,25,19
chr2	9989442	.	A	G	1932.87	PASS	AC=1;AF=0.58;AN=2;DP=2316;MQ=60;set=variant3-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,53:103:99:1141,0,1132:27,23,27,26
chr2	9991556	.	G	A	528.24	PASS	AC=2;AF=1;AN=2;DP=538;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.935;ReadPosRankSum=0.668;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:426,33,0:0,0,10,1
chr2	9994288	.	C	G	229.41	PASS	AC=1;AF=0.563;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:90:394,0,90:2,1,10,2
chr2	9994293	.	C	T	115.43	PASS	AC=1;AF=0.5;AN=2;DP=92;MQ=60;set=variant-variant12-variant15-variant18-variant19-variant32-variant36	GT:AD:DP:GQ:PL:SB	0/1:12,3:15:87:87,0,495:10,2,2,1
chr2	10008872	.	A	G	2482.14	PASS	AC=1;AF=0.58;AN=2;DP=4187;MQ=60;set=variant3-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,109:206:99:2883,0,2241:48,49,51,58
chr2	10044875	.	A	G	143.87	PASS	AC=2;AF=0.729;AN=2;DP=522;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:676,57,0:0,0,14,5
chr2	10044941	.	G	T	964.02	PASS	AC=2;AF=0.716;AN=2;DP=2242;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2483,192,0:0,0,44,18
chr2	10044946	.	G	T	967.31	PASS	AC=1;AF=0.571;AN=2;DP=1350;MQ=60;set=variant-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant25-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:897,0,943:23,11,24,10
chr2	10044999	.	C	G	1527.84	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:62,61:123:99:1556,0,1424:34,28,37,24
chr2	10045014	.	C	T	6504.81	PASS	AC=2;AF=0.895;AN=2;DP=5567;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:5983,409,0:0,0,77,58
chr2	10045024	.	G	A	6831.91	PASS	AC=2;AF=1;AN=2;DP=5920;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:6046,418,0:0,0,75,63
chr2	10045147	.	A	G	2799.69	PASS	AC=2;AF=1;AN=2;DP=3272;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2525,237,0:0,0,27,52
chr2	10050947	.	T	C	2103.79	PASS	AC=2;AF=0.716;AN=2;DP=5815;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5226,518,0:0,0,70,103
chr2	10050960	.	A	G	2024.11	PASS	AC=2;AF=0.716;AN=2;DP=5413;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,157:159:99:4569,399,0:2,0,61,96
chr2	10051053	.	G	C,A	973.59	PASS	AC=2,0;AF=0.716,0.014;AN=2;DP=1543;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:43:99:0,1,6,36
chr2	10051792	.	A	G	242.76	PASS	AC=1;AF=0.579;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant19-variant20-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:303,0,206:2,6,0,8
chr2	10053412	.	C	T	1476.19	PASS	AC=2;AF=0.716;AN=2;DP=4405;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:4882,507,0:0,0,70,100
chr2	10059770	.	G	T	1023.01	PASS	AC=2;AF=0.697;AN=2;DP=2727;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2524,245,0:0,0,47,35
chr2	10074384	.	G	A	834.19	PASS	AC=1;AF=0.545;AN=2;DP=1204;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:872,0,1102:20,20,17,18
chr2	10085499	.	T	C	312.77	PASS	AC=1;AF=0.5;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant13-variant14-variant15-variant25-variant27-variant28-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:649,0,412:0,11,1,17
chr2	10094992	.	A	G	755.96	PASS	AC=1;AF=0.667;AN=2;DP=2479;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1221,0,1270:34,15,34,16
chr2	10095374	.	C	T	694.39	PASS	AC=1;AF=0.5;AN=2;DP=1155;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:886,0,1029:11,25,9,23
chr2	10126416	.	A	G	914.97	PASS	AC=1;AF=0.641;AN=2;DP=1138;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:754,0,590:5,16,2,20
chr2	10133506	.	A	G	528.15	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:592,0,916:14,17,11,14
chr2	10133728	.	T	C	1609.22	PASS	AC=1;AF=0.5;AN=2;DP=2058;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,45:106:99:1079,0,1586:30,31,20,25
chr2	10133820	.	C	T	840.02	PASS	AC=1;AF=0.5;AN=2;DP=1057;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,14:43:99:329,0,734:10,19,4,10
chr2	10135855	.	T	C	328.54	PASS	AC=1;AF=0.5;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:416,0,406:10,7,11,4
chr2	10135956	.	G	A	1134.61	PASS	AC=1;AF=0.5;AN=2;DP=1712;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,51:104:99:1250,0,1421:30,23,28,23
chr2	10139018	.	A	G	365.6	PASS	AC=1;AF=0.857;AN=2;DP=92;FS=0;set=variant5-variant6-variant15-variant19-variant21-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:1,8:9:15:276,0,15:1,0,7,1
chr2	10140651	.	A	G	3890.93	PASS	AC=1;AF=0.558;AN=2;DP=4095;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,84:186:99:2186,0,2551:60,42,49,35
chr2	10140981	.	C	T	4805.11	PASS	AC=1;AF=0.558;AN=2;DP=4041;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,93:177:99:2091,0,2098:42,42,46,47
chr2	10141191	.	G	A	2445.5	PASS	AC=1;AF=0.558;AN=2;DP=1991;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:1236,0,1637:30,25,27,17
chr2	10142073	.	T	C	3015.14	PASS	AC=1;AF=0.641;AN=2;DP=7162;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:130,148:278:99:4296,0,3264:55,75,55,93
chr2	10142302	.	G	A	6165.71	PASS	AC=1;AF=0.558;AN=2;DP=6111;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:184,95:279:99:2064,0,5067:61,123,36,59
chr2	10142331	.	C	T	4271.47	PASS	AC=1;AF=0.558;AN=2;DP=4220;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:133,57:190:99:1308,0,3982:35,98,19,38
chr2	10183748	.	TGCC	T,TGCCGCC	578.57	PASS	AC=1,0;AF=0.522,0.043;AN=2;DP=954;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant25-variant31-variant32-variant34-variant35-variant37-variant40-variant43	GT:DP:GQ:SB	0/1:55:99:26,10,15,4
chr2	10183970	.	A	G	1199.23	PASS	AC=1;AF=0.567;AN=2;DP=1743;MQ=60;set=variant-variant5-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant25-variant31-variant32-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,62:130:99:1355,0,1677:31,37,24,38
chr2	10186419	.	A	G	2039.37	PASS	AC=1;AF=0.5;AN=2;DP=1444;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant14-variant15-variant19-variant25-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:115,83:198:99:1967,0,2770:55,60,44,39
chr2	10188649	.	A	T	3261.47	PASS	AC=2;AF=0.795;AN=2;DP=10112;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:6910,695,0:0,0,104,128
chr2	10192851	.	G	GTT,GT	1187.32	PASS	AC=1,0;AF=0.635,0.081;AN=2;DP=2736;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:72:99:26,23,15,8
chr2	10193178	.	C	A	5940.62	PASS	AC=1;AF=0.5;AN=2;DP=4157;MQ=60;set=variant5-variant10-variant14-variant15-variant19-variant25-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:307,311:618:99:7628,0,7589:142,165,138,173
chr2	10194192	.	T	C	5757.97	PASS	AC=2;AF=0.795;AN=2;DP=15873;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,411:411:99:13464,1231,0:0,0,214,197
chr2	10194487	.	T	C	4029.08	PASS	AC=1;AF=0.671;AN=2;DP=13665;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:234,309:543:99:7930,0,6080:113,121,134,175
chr2	10197034	.	A	T	2850.63	PASS	AC=1;AF=0.5;AN=2;DP=2312;MQ=60;set=variant5-variant10-variant14-variant15-variant19-variant25-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:137,158:295:99:4048,0,3129:81,56,92,66
chr2	10197270	.	T	A	4605.42	PASS	AC=2;AF=0.795;AN=2;DP=11835;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,358:358:99:11427,1074,0:0,0,136,222
chr2	10197615	.	T	C	888.89	PASS	AC=2;AF=0.795;AN=2;DP=2280;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1961,171,0:0,0,31,26
chr2	10198113	.	C	A	527.17	PASS	AC=1;AF=0.716;AN=2;DP=1523;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:681,0,460:7,12,12,14
chr2	10198197	.	G	C	595.3	PASS	AC=1;AF=0.567;AN=2;DP=617;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant25-variant31-variant32-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:589,0,793:18,11,13,7
chr2	10198262	.	G	A	624.67	PASS	AC=1;AF=0.567;AN=2;DP=794;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant25-variant31-variant32-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:658,0,889:20,18,17,10
chr2	10198538	.	C	G	1337.33	PASS	AC=1;AF=0.5;AN=2;DP=847;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant14-variant15-variant19-variant25-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,35:110:99:818,0,1880:38,37,20,15
chr2	10225241	.	C	T	1754.28	PASS	AC=1;AF=0.898;AN=2;DP=2723;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:814,0,1089:28,11,23,10
chr2	10226306	.	G	GC	1385.47	PASS	AC=1;AF=0.769;AN=2;DP=3961;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,62:139:99:1879,0,2481:32,45,26,36
chr2	10262920	.	T	G	2308.65	PASS	AC=2;AF=0.798;AN=2;DP=7090;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:7207,674,0:0,0,91,134
chr2	10264057	.	T	C	1115.05	PASS	AC=2;AF=0.821;AN=2;DP=3056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2296,225,0:0,0,35,40
chr2	10265144	.	A	G	277.21	PASS	AC=2;AF=0.553;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant15-variant18-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:755,51,0:0,0,1,16
chr2	10270757	.	AT	ATT,A,ATTT	234.25	PASS	AC=0,1,0;AF=0.229,0.229,0.043;AN=2;DP=3616;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant12-filterInvariant13-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-filterInvariant26-filterInvariant27-filterInvariant32-variant33-variant34-filterInvariant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:81:99:13,38,7,23
chr2	10271196	.	A	G	6291.99	PASS	AC=2;AF=0.55;AN=2;DP=9632;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant14-variant15-variant18-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,603:604:99:18701,1780,0:1,0,280,323
chr2	10271564	.	CATTTTA	C	2237.82	PASS	AC=2;AF=0.55;AN=2;DP=2155;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant14-variant15-variant18-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,115:116:99:5053,281,0:0,1,23,92
chr2	10281903	.	G	GC	776.77	PASS	AC=2;AF=1;AN=2;DP=1960;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1778,150,0:0,0,34,16
chr2	10282147	.	T	C	1173.28	PASS	AC=2;AF=0.756;AN=2;DP=4962;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5584,549,0:0,0,76,107
chr2	10332539	.	A	G	309.64	PASS	AC=2;AF=0.607;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1727,138,0:0,0,39,7
chr2	10443340	.	A	G	228.84	PASS	AC=1;AF=0.895;AN=2;DP=447;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:89:89,0,160:2,3,2,2
chr2	10443748	.	C	CG	3112.73	PASS	AC=2;AF=1;AN=2;DP=2760;FS=0;MQ=60;MQRankSum=1.354;ReadPosRankSum=1.354;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3304,253,0:0,0,48,34
chr2	10443756	.	G	C	3273.81	PASS	AC=1;AF=0.86;AN=2;DP=2958;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:986,0,948:25,20,26,18
chr2	10443779	.	G	GC	4139.4	PASS	AC=2;AF=1;AN=2;DP=3645;FS=0;MQ=60;MQRankSum=-0.666;ReadPosRankSum=1.679;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:4451,301,0:0,0,58,39
chr2	10443782	.	G	GC,GT	4206.2	PASS	AC=2,0;AF=0.898,0.102;AN=2;DP=3685;FS=0;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:100:99:0,0,61,39
chr2	10443788	.	A	AG	4255.04	PASS	AC=2;AF=1;AN=2;DP=3803;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4615,313,0:0,0,63,39
chr2	10537018	.	A	G	1236.3	PASS	AC=1;AF=0.648;AN=2;DP=3610;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,71:145:99:1781,0,1741:34,40,37,34
chr2	10548577	.	C	T	79.67	PASS	AC=1;AF=0.583;AN=2;DP=234;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant15-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:217,0,318:8,4,5,4
chr2	10548826	.	T	C	370.84	PASS	AC=1;AF=0.696;AN=2;DP=469;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:216,0,307:7,7,5,5
chr2	10559675	.	A	T	151.36	PASS	AC=2;AF=0.595;AN=2;DP=482;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1041,84,0:0,0,24,4
chr2	10563233	.	G	A	846.66	PASS	AC=1;AF=0.538;AN=2;DP=1420;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant15-variant21-variant22-variant27-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1605,0,2086:24,31,26,37
chr2	10563236	.	G	A	620.1	PASS	AC=1;AF=0.533;AN=2;DP=1467;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant10-variant12-variant15-variant24-variant27-variant30-variant31-variant32-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,56:111:99:1134,0,2208:22,33,24,32
chr2	10563297	.	G	A	332.52	PASS	AC=1;AF=0.538;AN=2;DP=683;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant15-variant21-variant22-variant27-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:898,0,769:10,20,8,23
chr2	10564528	.	C	T	987.9	PASS	AC=1;AF=0.536;AN=2;DP=1336;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant15-variant21-variant22-variant27-variant34-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,51:121:99:1085,0,1857:39,31,29,22
chr2	10566792	.	C	G	1704.52	PASS	AC=1;AF=0.533;AN=2;DP=2629;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant10-variant12-variant15-variant24-variant27-variant30-variant31-variant32-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,91:200:99:2216,0,2707:58,51,52,39
chr2	10566804	.	A	G	1723.79	PASS	AC=1;AF=0.533;AN=2;DP=2735;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant10-variant12-variant15-variant24-variant27-variant30-variant31-variant32-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,97:217:99:2296,0,2893:64,56,51,46
chr2	10567082	.	A	G	8886.26	PASS	AC=2;AF=0.798;AN=2;DP=13924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,389:389:99:11700,1162,0:0,0,191,198
chr2	10580021	.	G	A	198.81	PASS	AC=1;AF=0.5;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant16-variant24-variant26-variant28-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:232,0,151:4,2,6,1
chr2	10585302	.	T	C	533.27	PASS	AC=1;AF=0.5;AN=2;DP=329;MQ=60;set=variant4-variant15-variant16-variant24-variant26-variant28-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:555,0,438:8,10,6,14
chr2	10586780	.	T	C	175.7	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant16-variant24-variant26-variant28-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:250,0,582:7,1,5,2
chr2	10586790	.	A	G	175.7	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant16-variant24-variant26-variant28-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:225,0,607:7,2,4,2
chr2	10587169	.	T	A	196.55	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant16-variant24-variant26-variant28-variant29-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:144,0,159:0,4,0,4
chr2	10587869	.	G	A	188.06	PASS	AC=1;AF=0.629;AN=2;DP=774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:336,0,370:1,10,3,9
chr2	10588138	.	C	T	86.98	PASS	AC=1;AF=0.594;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant9-variant10-variant12-variant15-variant21-variant22-variant23-variant27-variant29-variant34-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:295,0,182:4,3,7,4
chr2	10588552	.	C	G	1414.45	PASS	AC=1;AF=0.622;AN=2;DP=5514;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,91:159:99:2138,0,1476:25,43,35,56
chr2	10595578	.	T	C	2351.6	PASS	AC=1;AF=0.591;AN=2;DP=1885;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant12-variant15-variant21-variant22-variant23-variant34	GT:AD:DP:GQ:PL:SB	0/1:106,105:211:99:2659,0,2660:52,54,50,55
chr2	10711112	.	G	A	1883.2	PASS	AC=1;AF=0.571;AN=2;DP=2816;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,81:149:99:1984,0,1601:32,36,34,47
chr2	10711941	.	C	A	1333.18	PASS	AC=2;AF=1;AN=2;DP=2130;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,70:71:99:2343,202,0:0,1,30,40
chr2	10717714	.	G	C	914.07	PASS	AC=1;AF=0.565;AN=2;DP=2004;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1061,0,929:24,11,27,15
chr2	10717806	.	C	T	1056.83	PASS	AC=1;AF=0.571;AN=2;DP=2035;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,67:131:99:1544,0,1537:31,33,32,35
chr2	10729032	.	C	T	234.61	PASS	AC=1;AF=0.569;AN=2;DP=464;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:255,0,276:7,5,8,1
chr2	10729897	.	C	T	1757.08	PASS	AC=1;AF=0.632;AN=2;DP=1702;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:658,0,625:6,15,12,16
chr2	10741141	.	A	G	404.24	PASS	AC=1;AF=0.672;AN=2;DP=213;FS=0;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,166:1,4,0,2
chr2	10742704	.	G	A	490.37	PASS	AC=1;AF=0.571;AN=2;DP=906;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:449,0,841:19,10,13,8
chr2	10743153	.	C	T	688.12	PASS	AC=1;AF=0.632;AN=2;DP=1226;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:388,0,543:9,11,6,7
chr2	10743191	.	G	A	764.45	PASS	AC=1;AF=0.632;AN=2;DP=1510;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:501,0,615:12,8,10,6
chr2	10747246	.	C	G	278.54	PASS	AC=1;AF=0.667;AN=2;DP=253;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:70:249,0,70:1,0,6,0
chr2	10747271	.	A	G	648.56	PASS	AC=1;AF=0.632;AN=2;DP=588;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:335,0,352:8,2,9,1
chr2	10762302	.	TA	T	2916.49	PASS	AC=2;AF=1;AN=2;DP=4736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:4452,361,0:0,0,55,65
chr2	10774531	.	C	T	428.8	PASS	AC=1;AF=0.571;AN=2;DP=780;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:948,0,999:26,11,25,11
chr2	10807748	.	C	T	74.09	PASS	AC=1;AF=0.591;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:214,0,398:5,9,3,6
chr2	10808776	.	C	CAA	2337.18	PASS	AC=2;AF=1;AN=2;DP=1916;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2655,178,0:0,0,23,36
chr2	10813782	.	T	C	1098.41	PASS	AC=2;AF=1;AN=2;DP=1287;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1159,111,0:0,0,13,24
chr2	10815833	.	A	G	175.66	PASS	AC=1;AF=0.565;AN=2;DP=477;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant21-variant22-variant23-variant25-variant28-variant32-variant34-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,14:17:8:455,0,8:2,1,11,3
chr2	10861696	.	T	G	152.74	PASS	AC=2;AF=0.976;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:502,42,0:0,0,6,8
chr2	10908662	.	G	A	191.07	PASS	AC=1;AF=0.577;AN=2;DP=229;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant13-variant14-variant15-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:99:326,0,136:4,0,10,2
chr2	10908893	.	A	G	1043.01	PASS	AC=1;AF=0.6;AN=2;DP=3203;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,49:100:99:1219,0,1381:24,27,19,30
chr2	10911891	.	T	C	3299.1	PASS	AC=2;AF=0.849;AN=2;DP=4055;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4172,378,0:0,0,90,36
chr2	10912153	.	T	G	2009.22	PASS	AC=1;AF=0.621;AN=2;DP=1919;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant31-variant35-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1323,0,1040:5,27,10,33
chr2	10912719	.	G	A	1621.29	PASS	AC=1;AF=0.577;AN=2;DP=1230;MQ=60;set=variant-variant2-variant3-variant11-variant13-variant14-variant15-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1162,0,1292:24,30,25,25
chr2	10914867	.	A	T	107.96	PASS	AC=1;AF=0.577;AN=2;DP=284;MQ=60;set=variant-variant2-variant3-variant11-variant13-variant14-variant15-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:408,0,488:12,5,12,3
chr2	10915020	.	A	G	938.82	PASS	AC=1;AF=0.64;AN=2;DP=2330;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,67:128:99:1839,0,1566:34,27,42,25
chr2	10917555	.	C	T	366.14	PASS	AC=1;AF=0.571;AN=2;DP=276;MQ=60;set=variant-variant2-variant3-variant11-variant13-variant14-variant15-variant16-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:174,0,250:4,3,5,0
chr2	10922516	.	A	C	1018.06	PASS	AC=2;AF=0.672;AN=2;DP=2425;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3107,285,0:0,0,32,63
chr2	10924524	.	T	C	856.8	PASS	AC=2;AF=0.676;AN=2;DP=2807;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3491,324,0:0,0,60,48
chr2	10924686	.	CT	C	2506.4	PASS	AC=2;AF=0.667;AN=2;DP=4597;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:5458,439,0:0,0,78,68
chr2	10927345	.	T	C	202.79	PASS	AC=1;AF=0.596;AN=2;DP=725;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:315,0,600:15,7,8,3
chr2	10928694	.	GA	GAAA,GAA,G	359.04	PASS	AC=1,1,0;AF=0.214,0.329,0.057;AN=2;DP=1502;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:54:99:3,5,35,11
chr2	10928710	.	A	C	553.49	PASS	AC=1;AF=0.583;AN=2;DP=1453;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1075,0,1167:31,12,24,19
chr2	10928777	.	A	C	924.16	PASS	AC=2;AF=0.667;AN=2;DP=4393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4893,485,0:0,0,86,76
chr2	10928906	.	T	C	1157.76	PASS	AC=2;AF=0.667;AN=2;DP=3344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3080,267,0:0,0,33,56
chr2	10928962	.	A	G	922.02	PASS	AC=2;AF=0.667;AN=2;DP=3095;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2982,282,0:0,0,45,49
chr2	10929133	.	A	G	527.92	PASS	AC=2;AF=0.667;AN=2;DP=1548;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1457,132,0:0,0,16,28
chr2	10929867	.	T	C	1062.73	PASS	AC=2;AF=0.667;AN=2;DP=3273;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3572,320,0:0,1,61,60
chr2	10930050	.	A	T	208.34	PASS	AC=2;AF=0.667;AN=2;DP=1016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1016,93,0:0,0,11,20
chr2	10930106	.	ATTTT	AT,A,ATTT	125.86	PASS	AC=2,0,0;AF=0.304,0.446,0.036;AN=2;DP=280;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:8:24:0,0,0,8
chr2	10930903	.	T	C	1112.68	PASS	AC=1;AF=0.583;AN=2;DP=2182;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1260,0,1266:23,32,20,30
chr2	10931001	.	A	G	282.34	PASS	AC=2;AF=0.676;AN=2;DP=438;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:655,48,0:0,0,1,15
chr2	10932082	.	T	C	856.36	PASS	AC=2;AF=0.667;AN=2;DP=1833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1829,173,0:0,0,17,41
chr2	10932989	.	G	A	91.49	PASS	AC=1;AF=0.595;AN=2;DP=167;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant25-variant26-variant29-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,115:1,3,2,1
chr2	10933249	.	C	T	1772.88	PASS	AC=2;AF=0.657;AN=2;DP=3688;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3924,395,0:0,0,53,79
chr2	10933346	.	T	TAGGC	315.98	PASS	AC=1;AF=0.583;AN=2;DP=907;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:1046,0,532:6,9,8,18
chr2	10937037	.	T	G	265.63	PASS	AC=2;AF=0.662;AN=2;DP=810;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1034,87,0:0,0,22,7
chr2	10937065	.	T	C	445.76	PASS	AC=1;AF=0.583;AN=2;DP=985;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:759,0,507:15,9,21,8
chr2	10937095	.	T	A	480.53	PASS	AC=1;AF=0.571;AN=2;DP=894;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant13-variant14-variant15-variant16-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:809,0,1172:28,20,22,13
chr2	10937409	.	C	T	81.15	PASS	AC=2;AF=0.681;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1378,114,0:0,0,6,32
chr2	10937980	.	T	C	341.43	PASS	AC=1;AF=0.571;AN=2;DP=485;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant13-variant14-variant15-variant16-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,22:30:99:573,0,147:2,6,10,12
chr2	10938043	.	T	G	45.94	PASS	AC=2;AF=0.681;AN=2;DP=433;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:501,45,0:0,0,4,11
chr2	10942567	.	G	A	79.7	PASS	AC=2;AF=0.681;AN=2;DP=390;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:737,60,0:0,0,16,4
chr2	10942687	.	C	T	754.35	PASS	AC=2;AF=0.681;AN=2;DP=3788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3189,327,0:0,0,63,46
chr2	10950111	.	ATGAC	A	628.42	PASS	AC=2;AF=0.681;AN=2;DP=1192;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:99:1499,105,0:0,0,21,9
chr2	10950136	.	T	C	966.45	PASS	AC=2;AF=0.681;AN=2;DP=1700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1929,149,0:0,0,31,19
chr2	10950284	.	G	C	1861.22	PASS	AC=2;AF=0.681;AN=2;DP=3588;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3649,354,0:0,0,60,58
chr2	10952790	.	T	C	1439.85	PASS	AC=2;AF=0.681;AN=2;DP=3363;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3787,383,0:0,0,68,60
chr2	10953001	.	G	T	1015.46	PASS	AC=2;AF=0.667;AN=2;DP=2558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2412,234,0:0,0,38,40
chr2	10953062	.	GT	G	208.79	PASS	AC=2;AF=0.667;AN=2;DP=1515;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1038,102,0:0,0,17,17
chr2	10959292	.	C	A	350.04	PASS	AC=1;AF=0.542;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant34-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,18:25:99:684,0,203:6,1,17,1
chr2	10959384	.	A	G	848.78	PASS	AC=1;AF=0.538;AN=2;DP=880;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,54:97:99:1447,0,950:26,17,30,24
chr2	10959407	.	A	C	989.27	PASS	AC=1;AF=0.542;AN=2;DP=1055;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,63:114:99:1688,0,1169:29,22,35,28
chr2	10959461	.	G	T	1092.54	PASS	AC=1;AF=0.542;AN=2;DP=1183;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,62:118:99:1603,0,1325:28,28,31,31
chr2	10959475	.	G	C	1026.71	PASS	AC=1;AF=0.538;AN=2;DP=1169;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,57:110:99:1428,0,1242:25,28,29,28
chr2	10960866	.	C	T	718.94	PASS	AC=1;AF=0.538;AN=2;DP=894;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:1020,0,1698:26,17,24,12
chr2	10960883	.	G	A	2662.22	PASS	AC=1;AF=0.6;AN=2;DP=846;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant12-variant15-variant17-variant28-variant32-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,50:92:99:1147,0,1527:28,14,29,21
chr2	10960952	.	G	A	906.96	PASS	AC=1;AF=0.538;AN=2;DP=1483;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,70:145:99:1726,0,1734:41,34,43,27
chr2	10961184	.	A	G	514.37	PASS	AC=1;AF=0.611;AN=2;DP=1544;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:834,0,645:8,14,12,18
chr2	10961297	.	C	T	286.49	PASS	AC=1;AF=0.538;AN=2;DP=329;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant16-variant18-variant24-variant27-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:342,0,317:5,9,5,8
chr2	10972316	.	G	C	54.21	PASS	AC=1;AF=0.533;AN=2;DP=421;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant9-variant11-variant15-variant16-variant18-variant22-variant24-variant26-variant27-variant32-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,20:28:99:575,0,232:5,3,15,5
chr2	10972383	.	A	G	381.59	PASS	AC=2;AF=0.977;AN=2;DP=2492;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1785,180,0:0,0,32,28
chr2	10972626	.	A	T	662.37	PASS	AC=2;AF=1;AN=2;DP=1254;FS=0;MQ=60;MQRankSum=1.641;ReadPosRankSum=-0.638;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:850,78,0:0,0,8,18
chr2	10977585	.	C	T	3573.36	PASS	AC=1;AF=0.667;AN=2;DP=414;MQ=60;set=variant12-variant15-variant36	GT:AD:DP:GQ:PL:SB	0/1:77,100:177:99:2295,0,1792:42,35,60,40
chr2	10978051	.	C	T	298.3	PASS	AC=1;AF=0.542;AN=2;DP=206;set=variant3-variant6-variant7-variant11-variant15-variant16-variant18-variant24-variant27-variant32-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:217,0,193:2,4,1,7
chr2	10978053	.	C	T	46.16	PASS	AC=2;AF=0.611;AN=2;DP=259;set=variant-variant3-variant6-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant24-variant27-variant32-variant35-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:594,42,0:0,0,3,11
chr2	10978056	.	G	A	94.73	PASS	AC=1;AF=0.786;AN=2;DP=472;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:90:494,0,90:0,3,3,9
chr2	10994418	.	T	C	948.25	PASS	AC=2;AF=1;AN=2;DP=1711;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1611,129,0:0,0,33,10
chr2	10994937	.	C	T	251.38	PASS	AC=1;AF=0.559;AN=2;DP=379;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant27-variant31-variant32-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:719,0,347:7,6,12,10
chr2	11053020	.	A	G	7564.51	PASS	AC=2;AF=0.864;AN=2;DP=12418;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,346:348:99:10663,981,0:2,0,161,185
chr2	11053740	.	C	T	3944.57	PASS	AC=2;AF=0.679;AN=2;DP=6479;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5640,547,0:0,0,91,92
chr2	11264830	.	G	A	1625.61	PASS	AC=1;AF=0.737;AN=2;DP=3299;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,41:87:99:1085,0,1104:28,18,26,15
chr2	11273123	.	TCACACACACACACACACACACACA	TCACACACACACACACACACACA,TCACACACACACACACACACACACACACA,TCACACACACACACACACACACACACA,TCACACACACACACACACA,T,TCACACACACACACACACACACACACACACA,TCACACACACACACACACACA,TCACACACACACACACACACACACACACACACACACA,TCACACACACACACACA	78.78	PASS	AC=0,1,0,0,0,0,0,0,0;AF=0.405,0.135,0.095,0.027,0.014,0.014,0.027,0.014,0.014;AN=2;DP=702;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:21:99:10,3,5,3
chr2	11280500	.	TAAA	TAA,TA,T	56.38	PASS	AC=0,1,1;AF=0.188,0.313,0.146;AN=2;DP=267;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	3/2:20:80:0,0,13,7
chr2	11284947	.	C	CT,CTTT	60.25	PASS	AC=2,0;AF=0.882,0.026;AN=2;DP=329;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:7:21:0,0,2,5
chr2	11295226	.	C	CG	189.48	PASS	AC=2;AF=0.963;AN=2;DP=358;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:51:710,51,0:0,0,15,1
chr2	11295247	.	G	GGGGCGAGGCGAGGTTGGCCAGA	797.1	PASS	AC=2;AF=0.619;AN=2;DP=352;set=variant2-variant3-variant7-variant9-variant13-variant15-variant16-variant17-variant18-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:66:974,66,0:0,0,16,0
chr2	11295867	.	G	C	3409.12	PASS	AC=2;AF=0.768;AN=2;DP=3829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3508,355,0:0,0,48,71
chr2	11300732	.	C	T	5598.33	PASS	AC=1;AF=0.643;AN=2;DP=6171;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,96:163:99:2443,0,1848:39,28,54,42
chr2	11300869	.	T	C	4139.53	PASS	AC=2;AF=0.898;AN=2;DP=5113;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4519,416,0:0,0,54,85
chr2	11300927	.	TAAAA	TA,T,TAA,TAAA	806.59	PASS	AC=0,1,0,0;AF=0.364,0.303,0.015,0.015;AN=2;DP=1462;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:32:99:0,11,4,17
chr2	11312181	.	G	A	2351.17	PASS	AC=1;AF=0.605;AN=2;DP=2931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1140,0,921:11,26,15,29
chr2	11312224	.	C	T	1482.96	PASS	AC=1;AF=0.61;AN=2;DP=1473;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:495,0,758:3,19,0,14
chr2	11318191	.	G	GAGA	7340.61	PASS	AC=1;AF=0.59;AN=2;DP=11970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,185:379:99:7251,0,9163:87,107,86,99
chr2	11318457	.	G	A	2648.36	PASS	AC=1;AF=0.628;AN=2;DP=2788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,32:74:99:980,0,1243:29,13,23,9
chr2	11318477	.	C	T	3055.36	PASS	AC=2;AF=0.852;AN=2;DP=4058;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3552,314,0:0,0,66,39
chr2	11320877	.	C	T	15519	PASS	AC=1;AF=0.595;AN=2;DP=16448;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:312,271:583:99:6518,0,7948:153,159,140,131
chr2	11321309	.	T	A	425.05	PASS	AC=1;AF=0.5;AN=2;DP=36;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:453,0,525:1,11,0,12
chr2	11321311	.	T	A	425.05	PASS	AC=1;AF=0.5;AN=2;DP=30;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:453,0,525:1,9,0,11
chr2	11321757	.	CTT	CT,CTTTTTTTTT,CTTT,CTTTTTTTTTT,CTTTTTTTT,C,CTTTTTT	87.74	PASS	AC=1,0,0,0,0,0,0;AF=0.35,0.025,0.025,0.025,0.025,0.025,0.025;AN=2;DP=1089;set=filterInvariant2-filterInvariant3-variant4-variant5-filterInvariant8-variant11-filterInvariant14-variant15-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-variant27-filterInvariant30-filterInvariant32-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43	GT:DP:GQ:SB	0/1:40:99:1,21,1,17
chr2	11322137	.	A	AAAAAAC	5796.68	PASS	AC=1;AF=0.628;AN=2;DP=5074;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,44:117:99:1894,0,4711:44,29,29,15
chr2	11323078	.	CTATA	CTA,C	3015.38	PASS	AC=2,0;AF=0.852,0.023;AN=2;DP=4837;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:96:99:1,1,33,61
chr2	11323276	.	T	C	2859.59	PASS	AC=1;AF=0.595;AN=2;DP=3860;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,59:128:99:1536,0,1613:29,40,29,30
chr2	11333994	.	T	G	922.37	PASS	AC=1;AF=0.5;AN=2;DP=1537;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant33-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,41:64:99:1162,0,549:8,15,12,29
chr2	11348364	.	C	CTAACT	409.21	PASS	AC=1;AF=0.618;AN=2;DP=562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:282,0,270:3,1,6,1
chr2	11348609	.	CAAAT	C	1028.15	PASS	AC=1;AF=0.595;AN=2;DP=937;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:564,0,387:2,6,2,12
chr2	11356190	.	G	A	1101.45	PASS	AC=1;AF=0.595;AN=2;DP=1085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:383,0,458:11,5,10,7
chr2	11357100	.	G	A	36.95	PASS	AC=1;AF=0.717;AN=2;DP=164;FractionInformativeReads=1;set=variant2-variant3-variant4-variant7-variant8-variant9-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:66:66,0,157:3,2,2,0
chr2	11359031	.	G	T	1352.23	PASS	AC=2;AF=0.875;AN=2;DP=1453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1114,96,0:0,0,25,7
chr2	11359120	.	G	T	3095.96	PASS	AC=1;AF=0.615;AN=2;DP=3459;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:1466,0,1518:35,23,37,22
chr2	11484452	.	AGCCCGGCCCAGCCCG	A	905.87	PASS	AC=1;AF=0.5;AN=2;DP=175;MQ=60;set=variant8-variant15-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:661,0,1615:16,16,8,10
chr2	11584704	.	T	C	239.32	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3565;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:140,24:164:99:127,0,8046:11,129,24,0
chr2	11584709	.	A	C	224.99	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3004;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:132,22:154:99:131,0,7927:8,124,22,0
chr2	11584713	.	G	C	281.51	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2688;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:123,21:144:99:143,0,7830:6,117,21,0
chr2	11593496	.	A	G	363.18	PASS	AC=1;AF=0.673;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:195,0,227:6,0,5,2
chr2	11674295	.	A	C	676.92	PASS	AC=2;AF=0.643;AN=2;DP=740;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1087,114,0:0,0,20,18
chr2	11680896	.	CAA	C	1717.79	PASS	AC=2;AF=0.712;AN=2;DP=1016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1236,84,0:0,0,9,19
chr2	11682754	.	C	CG	501.78	PASS	AC=2;AF=0.816;AN=2;DP=154;MQ=60;set=variant3-variant7-variant9-variant12-variant13-variant15-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,9,0
chr2	11682796	.	A	T	128.27	PASS	AC=2;AF=0.712;AN=2;DP=561;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:642,63,0:0,0,14,7
chr2	11683074	.	T	G	61.77	PASS	AC=2;AF=0.75;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:213,18,0:0,0,1,5
chr2	11702661	.	A	C	593.22	PASS	AC=2;AF=0.597;AN=2;DP=1584;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1781,188,0:0,0,27,35
chr2	11718591	.	C	T	1428.37	PASS	AC=2;AF=0.652;AN=2;DP=1605;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1506,135,0:0,0,12,33
chr2	11725947	.	T	C	1643.04	PASS	AC=1;AF=0.536;AN=2;DP=1873;MQ=60;set=variant3-variant5-variant7-variant8-variant10-variant14-variant15-variant26-variant31-variant32-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:94,82:176:99:1988,0,2358:50,44,47,35
chr2	11726061	.	G	GA	1742.89	PASS	AC=1;AF=0.567;AN=2;DP=1605;MQ=60;set=variant3-variant5-variant7-variant8-variant10-variant14-variant15-variant26-variant31-variant32-variant33-variant34-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,72:146:99:2167,0,2311:25,49,33,39
chr2	11727393	.	TG	T	3087.94	PASS	AC=1;AF=0.536;AN=2;DP=1946;MQ=60;set=variant3-variant5-variant7-variant8-variant10-variant14-variant15-variant26-variant31-variant32-variant33-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,61:117:99:2115,0,1906:35,21,38,23
chr2	11727507	.	G	A	1986.52	PASS	AC=1;AF=0.688;AN=2;DP=8499;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,126:236:99:2869,0,2548:52,58,62,64
chr2	11727819	.	TAACACACACACACA	TCACA,TCA,T,TCACACACACA	197.34	PASS	AC=0,1,0,0;AF=0.409,0.045,0.045,0.045;AN=2;DP=156;set=variant3-variant5-variant7-variant8-variant10-variant15-variant26-variant31-variant32-variant33-variant35	GT:DP:GQ:SB	0/2:12:99:4,2,3,3
chr2	11727988	.	G	C	394.5	PASS	AC=1;AF=0.688;AN=2;DP=1441;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:318,0,675:14,15,9,10
chr2	11728353	.	CA	C	41.3	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=59.73;MQRankSum=-1.281;QD=2.29;ReadPosRankSum=2.76;SOR=0.33;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:79:79,0,287:11,2,4,1
chr2	11728381	.	T	C	553.45	PASS	AC=1;AF=0.688;AN=2;DP=1042;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:335,0,454:12,4,9,3
chr2	11729096	.	G	A	1054.87	PASS	AC=1;AF=0.567;AN=2;DP=680;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant10-variant14-variant15-variant26-variant31-variant32-variant33-variant34-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:760,0,651:5,17,3,21
chr2	11731774	.	T	G	1341.55	PASS	AC=1;AF=0.688;AN=2;DP=4188;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,46:127:99:1299,0,2462:53,28,30,16
chr2	11731846	.	T	C	2565.92	PASS	AC=1;AF=0.688;AN=2;DP=8237;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,117:252:99:2946,0,3616:85,50,71,46
chr2	11736037	.	A	G	246.04	PASS	AC=1;AF=0.675;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:343,0,246:6,2,10,2
chr2	11736305	.	G	A	1809.08	PASS	AC=1;AF=0.533;AN=2;DP=2269;MQ=60;set=variant3-variant5-variant7-variant8-variant10-variant14-variant15-variant26-variant31-variant32-variant33-variant34-variant35-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:87,94:181:99:2089,0,2182:38,49,43,51
chr2	11738091	.	T	C	6729.62	PASS	AC=2;AF=0.989;AN=2;DP=11138;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,279:279:99:8280,835,0:0,0,131,148
chr2	11738765	.	C	T	1148.05	PASS	AC=2;AF=0.977;AN=2;DP=1182;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:954,78,0:0,0,22,4
chr2	11741193	.	C	A	263.61	PASS	AC=2;AF=0.989;AN=2;DP=774;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.371;ReadPosRankSum=-1.66;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:414,33,0:0,0,1,10
chr2	11752319	.	CA	CAAAA,C,CAA,CAAA,CAAAAA	191.51	PASS	AC=0,0,2,0,0;AF=0.273,0.045,0.205,0.136,0.023;AN=2;DP=212;set=variant3-variant4-variant5-variant6-variant8-variant12-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant36-variant38-variant43-variant44	GT:DP:GQ:SB	3/3:10:33:0,0,9,1
chr2	11752635	.	T	C	2978.82	PASS	AC=2;AF=1;AN=2;DP=3347;FS=0;MQ=60;MQRankSum=1.256;ReadPosRankSum=0.52;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2939,272,0:0,0,42,49
chr2	11755443	.	T	G	475.52	PASS	AC=2;AF=0.854;AN=2;DP=1075;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1388,114,0:0,0,9,29
chr2	11757009	.	A	G	1645.34	PASS	AC=2;AF=0.989;AN=2;DP=2564;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1532,150,0:0,0,24,26
chr2	11758516	.	C	G	1840.49	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:101,78:179:99:1869,0,2664:47,54,39,39
chr2	11761309	.	T	C	1241.95	PASS	AC=2;AF=0.977;AN=2;DP=1495;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1316,114,0:0,0,9,29
chr2	11765378	.	G	A	1542.73	PASS	AC=1;AF=0.5;AN=2;DP=142;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.249;QD=10.86;ReadPosRankSum=0.043;SOR=0.699;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:80,62:142:99:1571,0,1979:35,45,27,35
chr2	11772986	.	C	G	908.52	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=2.21;FractionInformativeReads=1;MQ=60;MQRankSum=2.34;QD=14.89;ReadPosRankSum=-2.237;SOR=0.457;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:24,37:61:99:937,0,586:16,8,22,15
chr2	11774324	.	G	A	2083.55	PASS	AC=1;AF=0.614;AN=2;DP=6734;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:132,92:224:99:2209,0,3215:65,67,51,41
chr2	11781261	.	GT	G	1120.76	PASS	AC=1;AF=0.533;AN=2;DP=1551;MQ=60;set=variant-variant3-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant19-variant27-variant29-variant33-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1200,0,1158:33,15,38,13
chr2	11781593	.	G	GGTTTT,GGTTTTGTTTTGTTTT,GGTTTGGTTTTGTTTT,GGTTTTGTTTT	501.12	PASS	AC=1,0,0,0;AF=0.238,0.338,0.013,0.113;AN=2;DP=937;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:12:99:1,3,1,7
chr2	11798481	.	A	T	717.81	PASS	AC=1;AF=0.536;AN=2;DP=958;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant12-variant15-variant21-variant25-variant30-variant32-variant34-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:48,39:87:99:1164,0,1324:27,21,18,21
chr2	11802214	.	C	T	1406.76	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.514;QD=12.79;ReadPosRankSum=0.849;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:53,57:110:99:1435,0,1265:26,27,29,28
chr2	11810095	.	G	A	4394.69	PASS	AC=2;AF=0.989;AN=2;DP=6292;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4749,454,0:0,0,65,87
chr2	11810488	.	C	G	174.68	PASS	AC=1;AF=0.536;AN=2;DP=220;MQ=60;set=variant2-variant3-variant10-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:144,0,573:2,14,0,5
chr2	11817812	.	G	C	1074.72	PASS	AC=1;AF=0.75;AN=2;DP=5506;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,71:135:99:1778,0,1418:33,31,39,32
chr2	11853774	.	T	C	169.95	PASS	AC=1;AF=0.741;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:189,0,155:3,2,4,1
chr2	11853963	.	C	T	1292.05	PASS	AC=1;AF=0.5;AN=2;DP=719;MQ=60;set=variant3-variant5-variant10-variant15-variant31-variant32-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:883,0,1364:27,28,22,19
chr2	11853988	.	A	T	917.89	PASS	AC=1;AF=0.662;AN=2;DP=3291;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1071,0,1080:25,23,28,23
chr2	11854099	.	T	C	322.48	PASS	AC=1;AF=0.662;AN=2;DP=1407;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:699,0,618:12,16,5,19
chr2	11905636	.	GT	G	2185.28	PASS	AC=1;AF=0.697;AN=2;DP=2839;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,52:86:99:1254,0,729:21,13,30,22
chr2	11905876	.	C	T	1721.25	PASS	AC=1;AF=0.596;AN=2;DP=1264;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant33-variant35-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:812,0,826:14,18,12,21
chr2	11917278	.	T	C	1159.01	PASS	AC=1;AF=0.596;AN=2;DP=1291;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant33-variant35-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:795,0,978:23,13,23,6
chr2	11917519	.	G	A	2921.52	PASS	AC=1;AF=0.636;AN=2;DP=3627;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,54:118:99:1352,0,1621:32,32,21,33
chr2	11924950	.	T	C	494.29	PASS	AC=1;AF=0.689;AN=2;DP=2713;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,31:87:99:775,0,1317:28,28,21,10
chr2	11931931	.	A	AT	875.51	PASS	AC=1;AF=0.571;AN=2;DP=823;MQ=60;set=variant2-variant4-variant5-variant7-variant9-variant14-variant15-variant16-variant20-variant23-variant28-variant29-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:750,0,872:21,17,18,16
chr2	11932173	.	G	T	298.55	PASS	AC=1;AF=0.639;AN=2;DP=1210;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:429,0,944:10,21,5,13
chr2	11936798	.	A	G	346.77	PASS	AC=1;AF=0.639;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:407,0,629:16,8,11,3
chr2	11945108	.	GT	GTT,G,GTTT	145.75	PASS	AC=1,0,0;AF=0.34,0.14,0.02;AN=2;DP=1666;set=filterInvariant-filterInvariant4-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant15-variant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant29-filterInvariant30-variant31-filterInvariant35-filterInvariant36-filterInvariant37-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:75:99:29,29,9,8
chr2	11965541	.	A	G	2834.89	PASS	AC=1;AF=0.795;AN=2;DP=9848;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:152,140:292:99:3131,0,3383:76,76,68,72
chr2	12164105	.	A	C	638.59	PASS	AC=1;AF=0.531;AN=2;DP=1037;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant7-variant12-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant30-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:964,0,1059:21,17,19,17
chr2	12164189	.	C	T	581.72	PASS	AC=2;AF=0.756;AN=2;DP=2355;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2233,201,0:0,0,29,38
chr2	12858078	.	G	A	2001.7	PASS	AC=1;AF=0.583;AN=2;DP=2590;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,73:172:99:1750,0,2367:49,50,38,35
chr2	12858202	.	C	T	2244.02	PASS	AC=1;AF=0.545;AN=2;DP=1394;MQ=60;set=variant4-variant13-variant15-variant17-variant21-variant25-variant28-variant29-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,81:152:99:1947,0,1774:27,44,38,43
chr2	12864766	.	C	T	2413.98	PASS	AC=1;AF=0.538;AN=2;DP=1975;MQ=60;set=variant4-variant8-variant13-variant14-variant15-variant17-variant21-variant25-variant28-variant29-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,109:201:99:2776,0,2416:56,36,63,46
chr2	12865048	.	A	T	4639.97	PASS	AC=1;AF=0.538;AN=2;DP=3958;MQ=60;set=variant4-variant8-variant13-variant14-variant15-variant17-variant21-variant25-variant28-variant29-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:210,182:392:99:4058,0,4981:91,119,79,103
chr2	12877307	.	C	G,T	121.62	PASS	AC=1,0;AF=0.603,0.147;AN=2;DP=1138;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:99:7,6,9,4
chr2	12877501	.	G	GA	474.32	PASS	AC=1;AF=0.769;AN=2;DP=4557;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,63:132:99:2176,0,2373:37,32,36,27
chr2	12881526	.	T	G	3913.18	PASS	AC=1;AF=0.559;AN=2;DP=5091;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant20-variant26-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:174,144:318:99:3655,0,4497:75,99,66,78
chr2	12881778	.	T	A	3514.58	PASS	AC=1;AF=0.656;AN=2;DP=10414;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:209,195:404:99:4549,0,5259:93,116,99,96
chr2	12882822	.	ATC	A	39.73	PASS	AC=1;AF=0.683;AN=2;DP=404;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:151,0,194:2,3,0,4
chr2	14789225	.	T	C	566.7	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.605;QD=12.59;ReadPosRankSum=-1.268;SOR=0.723;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:595,0,617:16,9,13,7
chr2	15372879	.	A	G	488.23	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant28-variant37	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:516,0,406:1,11,2,14
chr2	15378822	.	G	GAATT	277.58	PASS	AC=2;AF=0.955;AN=2;DP=474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:585,39,0:0,0,1,12
chr2	15415525	.	C	T	738.45	PASS	AC=1;AF=0.686;AN=2;DP=1682;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:624,0,1252:32,7,18,6
chr2	15417280	.	ATT	A	115.75	PASS	AC=1;AF=0.686;AN=2;DP=599;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:290,0,843:3,10,1,7
chr2	15417285	.	T	A	124.75	PASS	AC=1;AF=0.686;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:290,0,843:3,10,1,7
chr2	15427173	.	C	T	1469.87	PASS	AC=1;AF=0.621;AN=2;DP=3734;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,71:128:99:1781,0,1279:31,26,43,28
chr2	15448311	.	A	T	1234.64	PASS	AC=1;AF=0.691;AN=2;DP=4701;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,93:175:99:2239,0,1989:53,29,51,42
chr2	15468025	.	T	C	1510.24	PASS	AC=1;AF=0.5;AN=2;DP=2324;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:78,62:140:99:1379,0,1844:32,46,28,34
chr2	15471002	.	C	A	370.1	PASS	AC=2;AF=0.696;AN=2;DP=438;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant28-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:871,72,0:0,0,5,19
chr2	15491994	.	GCACACACACACA	G,GCA,GCACACACACA,GCACA,GCACACACACACACACACACA,GCACACACA	1434.63	PASS	AC=0,2,0,0,0,0;AF=0.186,0.512,0.035,0.012,0.012,0.023;AN=2;DP=2649;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:82:99:0,0,56,26
chr2	15493881	.	A	G	2166.01	PASS	AC=2;AF=0.795;AN=2;DP=2678;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1945,198,0:0,0,24,42
chr2	15519992	.	G	T	1749.23	PASS	AC=2;AF=0.798;AN=2;DP=2123;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1831,164,0:0,0,19,36
chr2	15523266	.	A	T	340.68	PASS	AC=2;AF=0.976;AN=2;DP=724;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1071,81,0:0,0,25,2
chr2	15523307	.	TA	T	1132.54	PASS	AC=2;AF=0.8;AN=2;DP=1398;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1652,165,0:0,0,37,18
chr2	15523549	.	T	C	639.53	PASS	AC=2;AF=0.813;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:694,54,0:0,0,3,15
chr2	15533689	.	T	C	998.69	PASS	AC=2;AF=0.798;AN=2;DP=1430;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1377,125,0:0,0,32,10
chr2	15533734	.	G	GAAATGAAAGCGTATGTCTACAC	2768.64	PASS	AC=2;AF=0.798;AN=2;DP=2571;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3667,249,0:0,0,46,22
chr2	15533779	.	G	A	2940.18	PASS	AC=2;AF=0.798;AN=2;DP=4941;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3430,317,0:0,0,52,54
chr2	15533884	.	C	A	2299.96	PASS	AC=2;AF=0.798;AN=2;DP=3046;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3022,208,0:0,0,20,49
chr2	15533895	.	A	G	2176.77	PASS	AC=2;AF=0.8;AN=2;DP=2438;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2745,184,0:0,0,16,44
chr2	15533899	.	A	G	2041.77	PASS	AC=2;AF=0.798;AN=2;DP=2381;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2700,181,0:0,0,16,44
chr2	15536437	.	A	G	559.81	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=2.221;FractionInformativeReads=1;MQ=60;MQRankSum=-1.703;QD=8.11;ReadPosRankSum=-1.319;SOR=0.397;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:43,26:69:99:588,0,1199:30,13,16,10
chr2	15564718	.	T	C	598.24	PASS	AC=2;AF=0.786;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:443,33,0:0,0,1,10
chr2	15567649	.	T	C	588.92	PASS	AC=2;AF=0.798;AN=2;DP=905;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:549,44,0:0,0,13,2
chr2	15601287	.	A	AT	1103.84	PASS	AC=2;AF=0.798;AN=2;DP=992;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:90:1149,90,0:0,0,21,8
chr2	15601441	.	C	T	2027.14	PASS	AC=2;AF=0.798;AN=2;DP=3361;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,94:96:99:2698,237,0:1,1,43,51
chr2	15601574	.	C	T	327.99	PASS	AC=2;AF=0.798;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:679,54,0:0,0,3,15
chr2	15607842	.	T	C	2265.54	PASS	AC=2;AF=0.795;AN=2;DP=3818;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3646,394,0:0,0,69,63
chr2	15608013	.	C	A	250.68	PASS	AC=2;AF=0.805;AN=2;DP=547;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,18:19:47:743,47,0:0,1,2,16
chr2	15613678	.	T	C	242.99	PASS	AC=2;AF=0.8;AN=2;DP=729;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:941,78,0:0,0,5,21
chr2	15613715	.	G	A	190.3	PASS	AC=2;AF=0.829;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:366,30,0:0,0,2,8
chr2	15614404	.	T	C	1239.93	PASS	AC=2;AF=0.798;AN=2;DP=3306;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3016,328,0:0,0,44,66
chr2	15615910	.	A	G	3120.86	PASS	AC=2;AF=0.8;AN=2;DP=4338;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3202,339,0:0,0,60,53
chr2	15616013	.	C	G	755.26	PASS	AC=2;AF=0.8;AN=2;DP=2019;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1742,153,0:0,0,13,38
chr2	15616030	.	C	T	554.71	PASS	AC=2;AF=0.8;AN=2;DP=1525;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1332,117,0:0,0,10,29
chr2	15618339	.	G	A	1095.03	PASS	AC=2;AF=0.798;AN=2;DP=1735;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1424,144,0:0,0,29,19
chr2	15623608	.	C	G	745.72	PASS	AC=2;AF=0.805;AN=2;DP=595;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:582,48,0:0,0,2,14
chr2	15644107	.	C	A	761.49	PASS	AC=1;AF=0.763;AN=2;DP=742;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:585,0,956:11,2,13,2
chr2	15644111	.	C	T	798.26	PASS	AC=1;AF=0.776;AN=2;DP=830;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:610,0,986:14,2,14,2
chr2	15644401	.	C	T	1106.04	PASS	AC=1;AF=0.769;AN=2;DP=1509;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,26:43:99:754,0,510:3,14,7,19
chr2	15674686	.	T	C	2427.06	PASS	AC=2;AF=0.788;AN=2;DP=4325;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3632,357,0:0,0,59,60
chr2	15676686	.	G	A	1414.57	PASS	AC=2;AF=0.798;AN=2;DP=2064;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1818,177,0:0,0,19,40
chr2	15678368	.	C	T	242.08	PASS	AC=2;AF=0.8;AN=2;DP=753;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:666,63,0:0,0,13,8
chr2	15678482	.	T	C	1110.97	PASS	AC=2;AF=0.8;AN=2;DP=1921;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1685,165,0:0,0,30,25
chr2	15678501	.	GA	G	1191.06	PASS	AC=2;AF=0.813;AN=2;DP=1933;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1482,150,0:0,0,25,25
chr2	15679609	.	A	T	131.48	PASS	AC=2;AF=0.838;AN=2;DP=231;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:715,57,0:0,0,2,17
chr2	15691886	.	G	A	560.6	PASS	AC=2;AF=0.8;AN=2;DP=761;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1231,87,0:0,0,4,25
chr2	15694164	.	T	TA	1496.78	PASS	AC=2;AF=0.798;AN=2;DP=1715;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2260,169,0:0,0,35,21
chr2	15731605	.	C	T	1708.91	PASS	AC=1;AF=0.692;AN=2;DP=2244;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:660,0,885:21,8,18,6
chr2	15731859	.	A	C	5555.12	PASS	AC=1;AF=0.692;AN=2;DP=7105;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,88:180:99:2190,0,2089:47,45,43,45
chr2	15731998	.	A	G	6690.76	PASS	AC=1;AF=0.692;AN=2;DP=7836;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,130:246:99:3347,0,2824:67,49,74,56
chr2	15735648	.	T	C	1101.07	PASS	AC=1;AF=0.5;AN=2;DP=1396;MQ=60;set=variant8-variant10-variant15-variant16-variant17-variant19-variant21-variant23-variant25-variant26-variant30-variant31-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1115,0,1530:24,31,24,21
chr2	15736697	.	G	A	837.5	PASS	AC=1;AF=0.5;AN=2;DP=1030;MQ=60;set=variant8-variant10-variant15-variant16-variant17-variant19-variant21-variant23-variant25-variant26-variant30-variant31-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,51:103:99:1268,0,1324:33,19,32,19
chr2	15746220	.	C	T	763.54	PASS	AC=1;AF=0.5;AN=2;DP=1237;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19-variant21-variant23-variant26-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,74:144:99:1931,0,1819:34,36,34,40
chr2	15747393	.	C	T	3465.37	PASS	AC=1;AF=0.681;AN=2;DP=3730;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,71:133:99:1787,0,1524:22,40,30,41
chr2	15753279	.	C	G	72.18	PASS	AC=1;AF=0.5;AN=2;DP=167;MQ=60;set=variant8-variant15-variant16-variant19-variant21-variant23-variant26-variant30-variant33-variant37	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:292,0,296:7,5,5,8
chr2	15768981	.	C	G	524.49	PASS	AC=1;AF=0.63;AN=2;DP=1085;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,17:54:99:357,0,883:14,23,6,11
chr2	15769607	.	C	T	352.58	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19-variant21-variant23-variant30-variant33-variant37	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:250,0,333:9,0,7,0
chr2	15770293	.	C	T	607.3	PASS	AC=1;AF=0.5;AN=2;DP=388;MQ=60;set=variant7-variant15-variant16-variant17-variant22-variant25-variant28-variant32	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:839,0,659:12,17,11,23
chr2	15840505	.	C	A	1152.15	PASS	AC=1;AF=0.663;AN=2;DP=3525;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1009,0,1250:26,22,21,19
chr2	15840522	.	G	T	1197.97	PASS	AC=1;AF=0.663;AN=2;DP=3719;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:984,0,1526:30,27,19,22
chr2	15840623	.	A	G	855.35	PASS	AC=1;AF=0.5;AN=2;DP=685;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant13-variant15-variant22-variant28-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,48:87:99:1269,0,924:15,24,18,30
chr2	15840645	.	T	C	712.05	PASS	AC=1;AF=0.686;AN=2;DP=2436;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:952,0,1132:13,28,13,22
chr2	15841230	.	T	A	317.15	PASS	AC=1;AF=0.675;AN=2;DP=447;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:166,0,343:8,5,6,0
chr2	15841288	.	G	A	392.67	PASS	AC=1;AF=0.663;AN=2;DP=1352;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:695,0,785:17,9,19,3
chr2	16086469	.	C	T	408.64	PASS	AC=1;AF=0.525;AN=2;DP=1468;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant29-variant33-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:871,0,888:18,19,15,20
chr2	16743453	.	A	C	803.1	PASS	AC=1;AF=0.574;AN=2;DP=3303;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,58:103:99:1550,0,1140:19,26,23,35
chr2	16746897	.	C	G	569.79	PASS	AC=1;AF=0.563;AN=2;DP=789;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant11-variant14-variant15-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:678,0,823:20,9,18,6
chr2	17691950	.	CA	C	2780.24	PASS	AC=2;AF=0.684;AN=2;DP=4381;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:3697,403,0:0,0,83,52
chr2	17696573	.	C	T	3983.54	PASS	AC=2;AF=0.684;AN=2;DP=6305;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5776,572,0:0,0,98,93
chr2	17698678	.	A	G	1922.25	PASS	AC=2;AF=0.711;AN=2;DP=2986;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3103,284,0:0,0,41,54
chr2	17720520	.	G	C	607.62	PASS	AC=1;AF=0.545;AN=2;DP=1110;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant29-variant32-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:822,0,650:17,10,14,18
chr2	17722597	.	T	C	4331.58	PASS	AC=2;AF=0.989;AN=2;DP=6274;FS=0;MQ=60;MQRankSum=-0.529;ReadPosRankSum=0.183;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:5004,443,0:0,0,103,45
chr2	17722654	.	G	A	2184.27	PASS	AC=1;AF=0.575;AN=2;DP=4881;MQ=60;set=variant2-variant3-variant9-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:136,140:276:99:3427,0,3441:72,64,77,63
chr2	17773524	.	G	A	694.56	PASS	AC=2;AF=0.731;AN=2;DP=1957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1431,143,0:0,0,17,31
chr2	17836722	.	TCACACACACA	TCACACACACACACACACACA,TCACACACACACACACACA,TCACACA,TCACACACACACACA,TCACACACA,T,TCACACACACACA,TCACACACACACACACA,TCA	2518.13	PASS	AC=0,1,0,0,0,0,0,1,0;AF=0.023,0.081,0.081,0.36,0.058,0.012,0.174,0.035,0.035;AN=2;DP=3671;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	8/2:49:99:6,0,31,12
chr2	17837741	.	C	T	1800.7	PASS	AC=1;AF=0.548;AN=2;DP=1814;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,52:110:99:1638,0,1872:20,38,26,26
chr2	17837992	.	A	G	3264.92	PASS	AC=1;AF=0.548;AN=2;DP=3914;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:127,104:231:99:2595,0,3273:65,62,55,49
chr2	17845296	.	A	G	10896.7	PASS	AC=2;AF=0.866;AN=2;DP=12972;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,360:361:99:10668,1039,0:1,0,164,196
chr2	17846162	.	A	G	477.66	PASS	AC=1;AF=0.545;AN=2;DP=1361;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:989,0,1095:22,18,18,17
chr2	17846592	.	A	T	6526.84	PASS	AC=2;AF=0.866;AN=2;DP=7630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6210,628,0:0,0,123,88
chr2	17883218	.	T	A	372.72	PASS	AC=1;AF=0.55;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:254,0,198:3,6,3,7
chr2	17884495	.	C	T	431.09	PASS	AC=1;AF=0.548;AN=2;DP=1001;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,21:53:99:475,0,806:19,13,11,10
chr2	17888457	.	G	A	930.6	PASS	AC=1;AF=0.643;AN=2;DP=2603;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,62:113:99:1831,0,1255:29,22,37,25
chr2	17897563	.	T	G	247.47	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.574;FractionInformativeReads=1;MQ=60;MQRankSum=0.642;QD=7.73;ReadPosRankSum=-1.148;SOR=0.375;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:276,0,633:5,15,4,8
chr2	17898326	.	C	T	909.76	PASS	AC=1;AF=0.643;AN=2;DP=2018;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,45:99:99:1085,0,1405:29,25,27,18
chr2	17913266	.	A	C	1647.07	PASS	AC=2;AF=1;AN=2;DP=1242;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:822,57,0:0,0,1,18
chr2	17927275	.	C	T	276.51	PASS	AC=1;AF=0.655;AN=2;DP=541;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:370,0,473:0,13,0,10
chr2	17941423	.	T	G	198.72	PASS	AC=1;AF=0.756;AN=2;DP=1512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,25:39:99:741,0,387:4,10,7,18
chr2	17942775	.	T	A	816.53	PASS	AC=1;AF=0.756;AN=2;DP=4027;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,46:114:99:955,0,1678:36,32,21,25
chr2	17954027	.	G	A	2304	PASS	AC=2;AF=1;AN=2;DP=3510;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3052,294,0:0,0,43,55
chr2	17954140	.	A	G	304.31	PASS	AC=1;AF=0.756;AN=2;DP=998;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:371,0,462:4,11,5,8
chr2	17954421	.	C	G	1140.69	PASS	AC=1;AF=0.756;AN=2;DP=2788;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:994,0,930:18,20,19,23
chr2	17954647	.	T	G	119.18	PASS	AC=1;AF=0.784;AN=2;DP=261;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,119:0,3,0,3
chr2	17959405	.	GTA	GTATA,G	63.41	PASS	AC=1,0;AF=0.31,0.238;AN=2;DP=554;set=variant-variant3-variant5-variant10-variant11-variant12-variant14-variant15-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-filterInvariant43	GT:DP:GQ:SB	0/1:21:99:3,12,0,6
chr2	17959420	.	TAC	T,TACAC	188.6	PASS	AC=1,0;AF=0.564,0.115;AN=2;DP=796;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:20:99:2,11,0,7
chr2	17959443	.	A	G	172.69	PASS	AC=1;AF=0.604;AN=2;DP=288;set=variant-variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant19-variant21-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:357,0,361:0,6,1,8
chr2	17962450	.	A	G	1297.68	PASS	AC=1;AF=0.714;AN=2;DP=3464;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,59:145:99:1433,0,2316:44,42,28,31
chr2	17962518	.	C	T	1547.34	PASS	AC=1;AF=0.756;AN=2;DP=4703;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,61:166:99:1324,0,2850:49,56,32,29
chr2	17965931	.	G	A	6569.43	PASS	AC=1;AF=0.714;AN=2;DP=13970;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:280,247:527:99:5970,0,6619:151,129,134,113
chr2	17966157	.	A	G	2410.3	PASS	AC=1;AF=0.756;AN=2;DP=5850;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,82:165:99:2249,0,2338:23,60,24,58
chr2	17966421	.	T	G	688.69	PASS	AC=1;AF=0.756;AN=2;DP=1637;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:467,0,627:16,6,12,5
chr2	17980511	.	A	T	461.69	PASS	AC=1;AF=0.615;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,18:52:99:413,0,907:13,21,6,12
chr2	17980541	.	C	G	441.49	PASS	AC=1;AF=0.635;AN=2;DP=838;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:404,0,642:8,16,6,11
chr2	17980834	.	G	A	185.36	PASS	AC=1;AF=0.5;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant14-variant15-variant17-variant21-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:273,0,284:7,2,7,4
chr2	17981258	.	C	T	390.93	PASS	AC=1;AF=0.694;AN=2;DP=773;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,6:23:99:193,0,599:12,5,4,2
chr2	17981308	.	G	T	753.51	PASS	AC=1;AF=0.732;AN=2;DP=1829;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:797,0,539:16,7,20,7
chr2	17981360	.	G	A	1858.14	PASS	AC=1;AF=0.732;AN=2;DP=4198;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,62:123:99:1608,0,1549:39,22,37,25
chr2	17981399	.	A	G	2203.28	PASS	AC=1;AF=0.756;AN=2;DP=6060;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,93:168:99:2190,0,1667:42,33,50,43
chr2	17981589	.	G	A	637.25	PASS	AC=1;AF=0.694;AN=2;DP=1442;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:762,0,611:4,16,6,18
chr2	17997581	.	T	C	470.6	PASS	AC=1;AF=0.568;AN=2;DP=340;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant33-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:400,0,158:4,2,11,3
chr2	17998025	.	A	T	4287.49	PASS	AC=1;AF=0.718;AN=2;DP=6087;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,85:199:99:2017,0,2757:56,58,37,48
chr2	17998095	.	C	T	3441.91	PASS	AC=1;AF=0.705;AN=2;DP=4676;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,70:157:99:1796,0,2573:38,49,33,37
chr2	17998331	.	T	C	1017.48	PASS	AC=1;AF=0.711;AN=2;DP=5671;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,107:210:99:2657,0,2474:49,54,43,64
chr2	18059150	.	G	T	339.75	PASS	AC=1;AF=0.556;AN=2;DP=185;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant15-variant17-variant21-variant25-variant29-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:112,0,118:3,2,3,1
chr2	18059381	.	A	G	359.52	PASS	AC=2;AF=0.952;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:595,48,0:0,0,5,11
chr2	18059912	.	T	C	66.22	PASS	AC=2;AF=0.94;AN=2;DP=529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:226,18,0:0,0,5,1
chr2	18099205	.	G	A	175.69	PASS	AC=1;AF=0.542;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant14-variant15-variant17-variant18-variant20-variant26-variant33-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,123:1,3,1,2
chr2	18112473	.	G	A	5902.49	PASS	AC=2;AF=1;AN=2;DP=7849;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6435,599,0:0,0,96,104
chr2	18113508	.	G	A	1868.05	PASS	AC=1;AF=0.533;AN=2;DP=2855;MQ=60;set=variant2-variant3-variant4-variant13-variant14-variant15-variant17-variant18-variant20-variant26-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,93:196:99:2388,0,2709:53,50,51,42
chr2	18113623	.	A	G	1972.33	PASS	AC=1;AF=0.72;AN=2;DP=5738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,86:154:99:2368,0,1711:28,40,37,49
chr2	18745466	.	C	T	468.58	PASS	AC=1;AF=0.55;AN=2;DP=348;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant15-variant21-variant22-variant23-variant34	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:524,0,836:7,21,2,15
chr2	18765169	.	C	T	620.42	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant6-variant15	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:842,0,638:16,12,22,10
chr2	18767384	.	G	T	410.63	PASS	AC=1;AF=0.571;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant19-variant21-variant24-variant25-variant28-variant31-variant32-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:294,0,169:5,0,8,1
chr2	20096936	.	C	A	311.43	PASS	AC=1;AF=0.5;AN=2;DP=95;MQ=60;set=variant-variant2-variant15-variant26-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:145,0,164:2,5,1,4
chr2	20097874	.	T	C	492.67	PASS	AC=1;AF=0.607;AN=2;DP=694;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant11-variant15-variant19-variant24-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,36:51:99:965,0,371:3,12,12,24
chr2	20100988	.	A	C	2238.59	PASS	AC=1;AF=0.5;AN=2;DP=1241;MQ=60;set=variant-variant2-variant5-variant6-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,79:170:99:2079,0,2435:43,48,36,43
chr2	20101222	.	GA	G	4685.62	PASS	AC=2;AF=0.919;AN=2;DP=4886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:4069,313,0:0,0,45,58
chr2	20101229	.	C	A	1380.85	PASS	AC=1;AF=0.5;AN=2;DP=1000;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:903,0,1675:26,36,20,22
chr2	20101363	.	G	A	594.48	PASS	AC=2;AF=0.66;AN=2;DP=1270;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1622,162,0:0,0,23,31
chr2	20101487	.	G	A	306.86	PASS	AC=1;AF=0.607;AN=2;DP=896;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant11-variant15-variant19-variant24-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,49:82:99:1396,0,746:19,14,34,15
chr2	20101717	.	A	G	896.19	PASS	AC=1;AF=0.5;AN=2;DP=931;MQ=60;set=variant-variant2-variant5-variant6-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,55:119:99:1401,0,1696:29,35,25,30
chr2	20101832	.	C	G	400.69	PASS	AC=1;AF=0.607;AN=2;DP=554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant11-variant15-variant19-variant24-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:723,0,628:9,17,10,16
chr2	20101878	.	C	T	407.27	PASS	AC=1;AF=0.625;AN=2;DP=243;MQ=60;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:267,0,538:4,14,1,8
chr2	20110700	.	G	A	3298.57	PASS	AC=1;AF=0.5;AN=2;DP=246;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.606;QD=13.41;ReadPosRankSum=5.493;SOR=0.72;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:113,133:246:99:3327,0,2811:50,63,58,75
chr2	20112796	.	C	T	5839.65	PASS	AC=1;AF=0.615;AN=2;DP=3537;MQ=60;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:208,158:366:99:3998,0,5458:110,98,74,84
chr2	20113088	.	G	T	2832.36	PASS	AC=1;AF=0.615;AN=2;DP=1607;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,76:160:99:1969,0,2251:30,54,32,44
chr2	20130145	.	T	G	719.76	PASS	AC=1;AF=0.5;AN=2;DP=776;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,21:60:99:557,0,1005:26,13,15,6
chr2	20130259	.	G	A	1126.57	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant2-variant15	GT:AD:DP:GQ:PL:SB	0/1:73,51:124:99:1174,0,1744:37,36,25,26
chr2	20131184	.	C	A	1462.08	PASS	AC=2;AF=0.989;AN=2;DP=1510;MQ=60;MQRankSum=0.201;ReadPosRankSum=0.755;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1446,126,0:0,0,10,32
chr2	20131987	.	T	C	646.13	PASS	AC=1;AF=0.615;AN=2;DP=352;MQ=60;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:565,0,506:14,5,15,8
chr2	20135283	.	T	C	1343.4	PASS	AC=2;AF=0.66;AN=2;DP=3412;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:4736,493,0:0,0,87,78
chr2	20137864	.	T	C	184.18	PASS	AC=1;AF=0.5;AN=2;DP=172;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,19:26:99:502,0,239:4,3,11,8
chr2	20160209	.	G	A	431.99	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:244,0,429:11,6,7,3
chr2	20160250	.	G	C	640.25	PASS	AC=1;AF=0.615;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:668,0,787:21,7,18,12
chr2	20173255	.	A	C	614.93	PASS	AC=2;AF=0.676;AN=2;DP=1190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1477,135,0:0,0,32,13
chr2	20189015	.	T	C	2080.63	PASS	AC=1;AF=0.5;AN=2;DP=1613;MQ=60;set=variant-variant2-variant5-variant6-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,94:176:99:2320,0,1904:37,45,37,57
chr2	20189089	.	C	T	1119.5	PASS	AC=2;AF=0.683;AN=2;DP=2947;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3150,289,0:0,0,31,66
chr2	20192696	.	G	A	2850.61	PASS	AC=2;AF=0.64;AN=2;DP=4563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,254:254:99:8005,763,0:0,0,148,106
chr2	20192931	.	G	A	1669.35	PASS	AC=1;AF=0.577;AN=2;DP=1161;MQ=60;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,55:112:99:1363,0,1504:23,34,20,35
chr2	20194036	.	G	C	970.4	PASS	AC=2;AF=0.64;AN=2;DP=2160;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3170,318,0:0,0,60,46
chr2	20201920	.	T	TACAC	179.98	PASS	AC=1;AF=0.5;AN=2;DP=151;set=variant-variant2-variant5-variant15-variant26-variant33-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:119,0,414:3,8,0,4
chr2	20201922	.	T	C	392.14	PASS	AC=1;AF=0.5;AN=2;DP=136;FractionInformativeReads=1;set=variant2-variant5-variant6-variant15-variant26-variant33-variant-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:215,0,377:3,8,1,5
chr2	20201952	.	C	CACACACACACACACACAG,CACACACACAG,CACACACACACAG,CACACACACACACACAG,CACACACACAGAG,CACAG	301.62	PASS	AC=0,0,1,0,0,0;AF=0.125,0.042,0.292,0.042,0.125,0.042;AN=2;DP=151;set=variant4-variant10-variant15-variant16-variant17-variant19-variant20-variant30-variant33-variant34-variant36-variant39	GT:DP:GQ:SB	0/3:12:99:2,4,1,5
chr2	20202811	.	A	G	307.53	PASS	AC=1;AF=0.591;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:407,0,246:7,2,11,3
chr2	20202929	.	C	T	2029.47	PASS	AC=1;AF=0.591;AN=2;DP=1544;MQ=60;set=variant3-variant13-variant15-variant16-variant17-variant20-variant29-variant30-variant34-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,77:166:99:1913,0,2247:52,37,45,32
chr2	20205423	.	A	AAAAG	446.36	PASS	AC=2;AF=0.62;AN=2;DP=765;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1747,120,0:0,0,30,9
chr2	20205680	.	C	T	709.25	PASS	AC=2;AF=0.64;AN=2;DP=3167;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4788,429,0:0,0,77,66
chr2	20205848	.	G	A	1978.41	PASS	AC=2;AF=0.64;AN=2;DP=4723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant26-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,198:199:99:6366,570,0:0,1,102,96
chr2	20212474	.	G	GGCCCCGCCCC	84.93	PASS	AC=2;AF=0.809;AN=2;DP=690;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:78:1148,78,0:0,0,12,13
chr2	20212647	.	A	G	126.15	PASS	AC=1;AF=0.719;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant10-variant11-variant15-variant16-variant19-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:76:76,0,236:5,5,1,2
chr2	20232287	.	C	T	294.86	PASS	AC=1;AF=0.716;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:387,0,556:15,0,13,0
chr2	20233135	.	T	C	351.06	PASS	AC=1;AF=0.722;AN=2;DP=560;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:235,0,151:2,3,0,7
chr2	20234523	.	C	T	841.17	PASS	AC=2;AF=0.966;AN=2;DP=1284;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:925,75,0:0,0,21,4
chr2	20251675	.	G	C	504.61	PASS	AC=2;AF=0.652;AN=2;DP=2292;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2731,269,0:0,0,44,46
chr2	20251758	.	C	T	391.62	PASS	AC=1;AF=0.571;AN=2;DP=749;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant11-variant14-variant15-variant19-variant24-variant32-variant33-variant37	GT:AD:DP:GQ:PL:SB	0/1:24,46:70:99:1142,0,531:7,17,20,26
chr2	20302527	.	C	T,A	746.7	PASS	AC=1,0;AF=0.594,0.063;AN=2;DP=1371;set=variant-variant2-variant4-variant5-variant6-variant14-variant15-variant18-variant19-variant24-variant26-variant32-variant33-variant37-variant41-variant44	GT:DP:GQ:SB	0/1:113:99:35,29,24,25
chr2	20320479	.	AG	A	153.84	PASS	AC=1;AF=0.563;AN=2;DP=178;set=variant5-variant14-variant15-variant20-variant27-variant29-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:61:322,0,61:3,0,10,0
chr2	20320493	.	G	A	41.82	PASS	AC=1;AF=0.675;AN=2;DP=558;set=filterInvariant-variant5-variant10-variant13-variant14-variant15-variant19-variant20-variant26-variant27-variant30-filterInvariant31-filterInvariant33-variant35-filterInvariant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:61:321,0,61:3,0,10,0
chr2	20400556	.	T	C	2701.91	PASS	AC=2;AF=0.989;AN=2;DP=4521;MQ=60;MQRankSum=1.265;ReadPosRankSum=-2.706;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4367,441,0:0,0,84,63
chr2	20401858	.	TAA	TA,T	274.12	PASS	AC=1,0;AF=0.529,0.071;AN=2;DP=1373;set=variant-variant2-filterInvariant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:39:99:10,5,16,8
chr2	20403794	.	A	T	6751.11	PASS	AC=2;AF=1;AN=2;DP=8927;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6131,600,0:0,0,110,91
chr2	20403949	.	C	T	5239.09	PASS	AC=1;AF=0.526;AN=2;DP=3370;set=variant2-variant3-variant4-variant5-variant7-variant9-variant12-variant13-variant15-variant17-variant20-variant23-variant25-variant26-variant30-variant34-variant35-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:118,89:207:99:2196,0,2987:53,65,37,52
chr2	20405004	.	C	T	104.2	PASS	AC=1;AF=0.577;AN=2;DP=383;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant22-variant23-variant25-variant26-variant29-variant30-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:226,0,134:4,1,6,0
chr2	20405050	.	A	C	911.08	PASS	AC=2;AF=1;AN=2;DP=1463;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1313,111,0:0,0,28,9
chr2	20423154	.	A	G	1394.14	PASS	AC=2;AF=1;AN=2;DP=2563;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2008,197,0:0,0,24,42
chr2	20424062	.	G	A	459.84	PASS	AC=1;AF=0.648;AN=2;DP=399;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant26-variant30-variant33-variant34-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:31:123,0,31:0,2,2,3
chr2	20424466	.	T	C	625.16	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.026;QD=10.25;ReadPosRankSum=-2.122;SOR=0.641;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:653,0,790:17,18,13,13
chr2	20424892	.	G	A	350.93	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.047;QD=17.55;ReadPosRankSum=1.222;SOR=0.653;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:98:379,0,98:1,4,4,11
chr2	20449174	.	G	A	3923.68	PASS	AC=1;AF=0.63;AN=2;DP=3155;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,77:168:99:1923,0,2408:55,36,51,26
chr2	20455176	.	GT	G	430.54	PASS	AC=2;AF=0.621;AN=2;DP=812;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:3,31:34:23:684,23,0:1,2,4,27
chr2	20460278	.	G	A	462.37	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=0.973;MQ=60;MQRankSum=0.875;QD=12.5;ReadPosRankSum=-0.398;SOR=0.569;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:491,0,452:5,11,7,13
chr2	20462852	.	G	C	156.22	PASS	AC=1;AF=0.667;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant15-variant17-variant18-variant23-variant26-variant30-variant32-variant33-variant34-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:96:96,0,153:4,0,3,0
chr2	20525948	.	T	C	1314.28	PASS	AC=2;AF=0.65;AN=2;DP=1211;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1876,165,0:0,0,41,14
chr2	20526892	.	C	CT	254.46	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;MQ=60;set=variant15-variant37	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:92:292,0,92:5,0,12,0
chr2	20648211	.	G	T	1649.99	PASS	AC=1;AF=0.578;AN=2;DP=1828;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:540,0,895:15,18,10,14
chr2	20648426	.	C	G	1334.07	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=0.654;FractionInformativeReads=0.993;MQ=60;MQRankSum=-1.11;QD=9.6;ReadPosRankSum=0.026;SOR=0.586;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:79,59:138:99:1362,0,2003:49,30,35,24
chr2	20648933	.	A	AT	5719.06	PASS	AC=1;AF=0.609;AN=2;DP=8010;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:118,93:211:99:1648,0,2403:42,76,30,63
chr2	20649063	.	ATTG	A	916.67	PASS	AC=1;AF=0.5;AN=2;DP=737;MQ=60;set=variant4-variant7-variant8-variant10-variant15-variant18-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,25:44:99:993,0,879:6,13,9,16
chr2	20699667	.	C	G	216.52	PASS	AC=2;AF=0.854;AN=2;DP=603;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:498,45,0:0,0,11,4
chr2	20700900	.	A	G	2461.57	PASS	AC=2;AF=1;AN=2;DP=5563;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5141,515,0:0,0,80,92
chr2	20729143	.	C	CT,CTT,CTTTTTT,CTTT	143.47	PASS	AC=0,2,0,0;AF=0.308,0.487,0.026,0.038;AN=2;DP=479;FS=0;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:13:39:0,0,10,3
chr2	20817493	.	C	T	114.14	PASS	AC=1;AF=0.563;AN=2;DP=230;set=variant4-variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:138,0,394:8,2,3,1
chr2	20817673	.	G	A	1634.7	PASS	AC=1;AF=0.563;AN=2;DP=2295;MQ=60;set=variant4-variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,101:184:99:2538,0,2037:47,36,59,42
chr2	20817812	.	A	G	982.72	PASS	AC=1;AF=0.5;AN=2;DP=1235;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,106:209:99:2673,0,2645:47,56,52,54
chr2	20818181	.	C	T	1058.75	PASS	AC=1;AF=0.5;AN=2;DP=641;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:926,0,1062:19,15,21,16
chr2	20818193	.	G	A	1293.97	PASS	AC=1;AF=0.81;AN=2;DP=2720;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,37:70:99:886,0,997:18,15,21,16
chr2	20818286	.	A	C	1709.23	PASS	AC=1;AF=0.81;AN=2;DP=3428;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1175,0,1261:26,28,25,25
chr2	20818454	.	T	A	1933.66	PASS	AC=1;AF=0.81;AN=2;DP=3992;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,54:94:99:1373,0,1036:17,23,27,27
chr2	20818764	.	C	T	4148.7	PASS	AC=1;AF=0.559;AN=2;DP=5128;MQ=60;set=variant4-variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,154:325:99:3389,0,4199:84,87,77,77
chr2	20821826	.	CACAGCCAGAAGGAACAAAGCCTTCTTAGCCTCG	C	771.24	PASS	AC=1;AF=0.5;AN=2;DP=478;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,35:80:99:1337,0,2573:31,14,30,5
chr2	20822218	.	T	C	1731.8	PASS	AC=2;AF=1;AN=2;DP=2062;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1816,147,0:0,0,28,21
chr2	20822333	.	G	GCT	1375.53	PASS	AC=1;AF=0.5;AN=2;DP=740;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,35:99:99:1272,0,4268:33,31,21,14
chr2	20822335	.	T	TCTTCAA	1417.3	PASS	AC=1;AF=0.5;AN=2;DP=735;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,34:100:99:1271,0,4268:34,32,20,14
chr2	20822486	.	G	C	2950.38	PASS	AC=1;AF=0.655;AN=2;DP=2042;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1318,0,1190:17,31,24,25
chr2	20822564	.	C	T	491.32	PASS	AC=1;AF=0.559;AN=2;DP=838;MQ=60;set=variant4-variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:919,0,1025:16,20,16,18
chr2	20823252	.	A	G	1044.44	PASS	AC=1;AF=0.81;AN=2;DP=2598;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,57:82:99:1401,0,567:10,15,26,31
chr2	20823286	.	T	C	815.18	PASS	AC=1;AF=0.559;AN=2;DP=1023;MQ=60;set=variant4-variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,27:77:99:573,0,1250:23,27,11,16
chr2	20823464	.	G	A	37.42	PASS	AC=1;AF=0.5;AN=2;DP=304;MQ=60;set=filterInvariant2-variant3-variant11-variant13-variant15-variant22-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:408,0,352:8,9,11,10
chr2	20823612	.	A	G	2007.24	PASS	AC=1;AF=0.81;AN=2;DP=2916;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:969,0,1038:28,17,22,18
chr2	20823724	.	T	C	3394.59	PASS	AC=2;AF=1;AN=2;DP=4321;FS=0;MQRankSum=-0.17;ReadPosRankSum=-0.509;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3777,359,0:0,0,62,58
chr2	20823850	.	T	C	2752.22	PASS	AC=2;AF=1;AN=2;DP=2637;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2865,276,0:0,0,31,61
chr2	20824498	.	C	T	2474.44	PASS	AC=1;AF=0.721;AN=2;DP=3463;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,50:117:99:1085,0,1598:34,33,30,20
chr2	20824708	.	T	C	1110.02	PASS	AC=1;AF=0.574;AN=2;DP=2145;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1064,0,882:14,21,15,28
chr2	20834578	.	G	A	425.17	PASS	AC=1;AF=0.5;AN=2;DP=344;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:572,0,717:10,14,8,11
chr2	20835450	.	A	G	752.96	PASS	AC=1;AF=0.588;AN=2;DP=677;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:648,0,585:8,13,8,16
chr2	20835663	.	G	C	819.07	PASS	AC=1;AF=0.5;AN=2;DP=382;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:464,0,870:20,15,11,8
chr2	20836712	.	A	G	468.45	PASS	AC=1;AF=0.567;AN=2;DP=769;MQ=60;set=variant2-variant3-variant8-variant9-variant10-variant11-variant13-variant15-variant20-variant22-variant27-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:724,0,1162:19,22,17,16
chr2	20836789	.	C	G	1129.4	PASS	AC=2;AF=0.75;AN=2;DP=1349;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3101,211,0:0,0,32,37
chr2	20836792	.	CCG	C	772.66	PASS	AC=1;AF=0.5;AN=2;DP=925;set=variant2-variant3-variant5-variant6-filterInvariant8-variant11-variant13-filterInvariant14-variant15-variant22-variant25-variant26-variant29-variant30-filterInvariant31-variant33-variant35-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,49:63:99:1511,0,208:9,5,20,29
chr2	20836798	.	C	T	960.58	PASS	AC=1;AF=0.5;AN=2;DP=336;MQ=60;set=variant3-variant11-variant13-variant15-variant22-variant37	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:693,0,966:15,19,16,17
chr2	20836932	.	G	T	783.75	PASS	AC=2;AF=1;AN=2;DP=2399;FS=0;MQ=60;MQRankSum=0.075;ReadPosRankSum=0.226;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2141,209,0:0,0,38,32
chr2	20837053	.	C	T	909.95	PASS	AC=1;AF=0.5;AN=2;DP=631;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,35:95:99:679,0,1488:32,28,20,15
chr2	20837127	.	T	C	1646.49	PASS	AC=2;AF=1;AN=2;DP=2833;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2757,246,0:0,0,45,37
chr2	20837292	.	G	A	1654.31	PASS	AC=1;AF=0.591;AN=2;DP=2202;MQ=60;set=variant3-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant20-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1711,0,1633:32,30,36,30
chr2	20837338	.	A	G	923.41	PASS	AC=1;AF=0.5;AN=2;DP=823;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,79:145:99:2106,0,1493:35,31,42,37
chr2	20837364	.	A	G	1420.26	PASS	AC=1;AF=0.531;AN=2;DP=1382;MQ=60;set=variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,62:133:99:1356,0,1658:32,39,29,33
chr2	20837464	.	C	T	614.24	PASS	AC=1;AF=0.5;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1290,0,1191:16,25,17,27
chr2	20837719	.	G	A	561.61	PASS	AC=1;AF=0.543;AN=2;DP=1188;MQ=60;set=variant2-variant4-variant5-variant6-variant12-variant14-variant15-variant20-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:810,0,746:15,11,18,14
chr2	20838222	.	C	T	3898.63	PASS	AC=1;AF=0.531;AN=2;DP=1678;MQ=60;set=variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1650,0,1625:35,29,31,32
chr2	20839725	.	G	T	279.76	PASS	AC=1;AF=0.567;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant33-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:138,0,144:3,2,3,3
chr2	20839956	.	T	C	667.15	PASS	AC=1;AF=0.5;AN=2;DP=528;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:978,0,766:17,13,19,21
chr2	20840074	.	A	C	674.17	PASS	AC=1;AF=0.5;AN=2;DP=640;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,34:79:99:1015,0,1133:24,21,20,14
chr2	20840375	.	G	T	1169.83	PASS	AC=1;AF=0.5;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant15-variant22-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1701,0,1441:30,25,29,34
chr2	20841059	.	C	T	1034.52	PASS	AC=2;AF=0.679;AN=2;DP=1142;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1450,105,0:0,0,4,31
chr2	20845273	.	G	A	495.96	PASS	AC=1;AF=0.724;AN=2;DP=2180;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:738,0,770:9,19,11,18
chr2	20866493	.	T	TGGAGGGCGAGCCCTTCCGCGGCCC	1261.41	PASS	AC=2;AF=0.731;AN=2;DP=1758;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:99:1810,122,0:0,0,20,10
chr2	20866720	.	G	C	2733.32	PASS	AC=2;AF=0.75;AN=2;DP=3071;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2901,288,0:0,0,45,51
chr2	20866888	.	CG	C	318.96	PASS	AC=2;AF=1;AN=2;DP=354;FS=0;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:426,36,0:0,0,7,5
chr2	20867122	.	G	GGGCGGCGGC,GGGCGGCGGCGGCGGCGGC,GGGCGGCGGCGGCGGC,GGGCGGCGGCGGC	322.17	PASS	AC=2,0,0,0;AF=0.765,0.162,0.029,0.029;AN=2;DP=321;FS=0;MQ=60;MQRankSum=0.633;ReadPosRankSum=0.633;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:13:39:0,0,7,6
chr2	20870579	.	G	A	2202.29	PASS	AC=2;AF=0.732;AN=2;DP=3285;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2698,259,0:0,0,37,50
chr2	20871190	.	A	C	4408.58	PASS	AC=2;AF=1;AN=2;DP=7071;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:6100,552,0:0,0,79,105
chr2	20871293	.	A	G	3083.23	PASS	AC=2;AF=1;AN=2;DP=5674;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,130:131:99:4235,360,0:1,0,54,76
chr2	20871867	.	ACCCCC	AC,A,ACC	4105.61	PASS	AC=2,0,0;AF=0.716,0.182,0.057;AN=2;DP=2722;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:68:99:0,0,29,39
chr2	20871874	.	C	A	4141.33	PASS	AC=2;AF=0.756;AN=2;DP=2477;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:3018,215,0:0,0,29,42
chr2	20871877	.	C	A	2140.1	PASS	AC=2;AF=0.72;AN=2;DP=2355;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:5,62:67:99:1437,118,0:0,5,26,36
chr2	20872960	.	A	AAT	5786.12	PASS	AC=1;AF=0.594;AN=2;DP=7564;set=variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,156:330:99:5702,0,8704:93,81,83,73
chr2	20872962	.	G	GA,A	7404.75	PASS	AC=0,1;AF=0.194,0.486;AN=2;DP=8968;set=variant12-variant15-variant16-variant17-variant18-variant19-variant4-variant3-variant20-variant21-variant6-variant-variant22-variant23-variant25-variant8-variant14-variant26-variant28-variant29-variant30-variant9-variant31-variant32-variant33-variant34-variant11-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:333:99:95,83,86,69
chr2	20873099	.	T	A	11269.5	PASS	AC=1;AF=0.653;AN=2;DP=10782;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:202,200:402:99:4648,0,4682:92,110,91,109
chr2	20873333	.	G	A	3107.71	PASS	AC=1;AF=0.653;AN=2;DP=3235;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,60:119:99:1469,0,1388:29,30,32,28
chr2	20873449	.	T	C	1654.74	PASS	AC=1;AF=0.594;AN=2;DP=1249;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:482,0,924:9,22,5,14
chr2	20883652	.	GGTGAA	G	1091.35	PASS	AC=1;AF=0.607;AN=2;DP=942;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:1104,0,871:17,7,20,8
chr2	20884135	.	TTTAATC	T	4773.31	PASS	AC=1;AF=0.625;AN=2;DP=6039;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,132:296:99:4879,0,7412:67,97,52,80
chr2	20884262	.	G	A	1816.67	PASS	AC=1;AF=0.683;AN=2;DP=1475;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:586,0,990:8,24,4,14
chr2	20884368	.	T	C	359.6	PASS	AC=1;AF=0.575;AN=2;DP=1224;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant15-variant16-variant18-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:724,0,448:12,8,15,10
chr2	20884546	.	A	C	1255.33	PASS	AC=1;AF=0.625;AN=2;DP=2764;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,73:156:99:1730,0,3297:40,43,39,34
chr2	20884550	.	C	A	1152.01	PASS	AC=1;AF=0.575;AN=2;DP=2454;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant15-variant16-variant18-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,85:159:99:2153,0,2802:39,35,42,43
chr2	20884586	.	G	C	1322.5	PASS	AC=1;AF=0.625;AN=2;DP=2784;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,73:150:99:1796,0,1944:37,40,37,36
chr2	20884973	.	A	C	6115.87	PASS	AC=1;AF=0.683;AN=2;DP=5137;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,106:236:99:2452,0,3086:68,62,58,48
chr2	20886216	.	A	G	2005.55	PASS	AC=1;AF=0.5;AN=2;DP=203;FS=1.721;FractionInformativeReads=1;MQ=60;MQRankSum=-0.768;QD=9.88;ReadPosRankSum=0.717;SOR=0.82;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:117,86:203:99:2034,0,3129:59,58,46,40
chr2	20939706	.	T	C	1379.67	PASS	AC=1;AF=0.704;AN=2;DP=1203;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:1220,0,2202:27,12,24,8
chr2	20939708	.	C	T	649.9	PASS	AC=1;AF=0.781;AN=2;DP=1497;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:1220,0,2202:27,14,24,8
chr2	21225281	.	C	T	3009.38	PASS	AC=1;AF=0.849;AN=2;DP=4523;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,55:152:99:1400,0,2694:44,53,24,31
chr2	21231524	.	G	A	1167.69	PASS	AC=1;AF=0.536;AN=2;DP=1697;MQ=60;set=variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant29-variant30-variant31-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,82:161:99:2199,0,2075:42,37,37,45
chr2	21232195	.	G	A	1183.03	PASS	AC=1;AF=0.641;AN=2;DP=3458;MQ=60;set=variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,33:95:99:802,0,1971:29,33,15,18
chr2	21232803	.	T	C	4714.59	PASS	AC=2;AF=1;AN=2;DP=5520;FS=0;MQ=60;MQRankSum=1.119;ReadPosRankSum=-0.08;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:6150,481,0:0,0,78,82
chr2	21232804	.	G	A	1216.32	PASS	AC=1;AF=0.641;AN=2;DP=3923;MQ=60;set=variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,80:160:99:2015,0,2095:41,39,37,43
chr2	21234915	.	A	G	1318.94	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=2.368;FractionInformativeReads=1;MQ=60;MQRankSum=-2.746;QD=11.08;ReadPosRankSum=-1.366;SOR=0.981;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:66,53:119:99:1347,0,1495:33,33,30,23
chr2	21235475	.	T	C	3349.77	PASS	AC=2;AF=1;AN=2;DP=4494;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4042,378,0:0,0,50,76
chr2	21236482	.	A	G	1337.74	PASS	AC=2;AF=1;AN=2;DP=2004;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2577,234,0:0,0,23,55
chr2	21237544	.	G	A	654.38	PASS	AC=1;AF=0.536;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant29-variant30-variant31-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:755,0,676:7,18,7,20
chr2	21238367	.	C	T	2114.98	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=1.321;FractionInformativeReads=1;MQ=60;MQRankSum=1.321;QD=14.1;ReadPosRankSum=-2.769;SOR=0.856;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:74,76:150:99:2143,0,2001:30,44,28,48
chr2	21248101	.	A	G	635.49	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.197;FractionInformativeReads=1;MQ=60;MQRankSum=1.028;QD=12.46;ReadPosRankSum=-0.311;SOR=0.417;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:664,0,683:7,20,8,16
chr2	21250914	.	G	A	3368.83	PASS	AC=1;AF=0.65;AN=2;DP=2698;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1155,0,1240:17,29,17,29
chr2	21251040	.	T	G	1559.69	PASS	AC=2;AF=0.886;AN=2;DP=1544;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1675,132,0:0,0,29,15
chr2	21252365	.	GAGGAAGGAAGGA	GAGGAAGGA,GAGGA,G,GAGGAAGGAAGGAAGGA	708.26	PASS	AC=1,0,1,0;AF=0.581,0.048,0.016,0.016;AN=2;DP=613;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	3/1:17:99:0,0,15,2
chr2	21255573	.	C	CCATCT	356.92	PASS	AC=2;AF=0.886;AN=2;DP=1244;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1010,69,0:0,0,5,18
chr2	21260136	.	G	A	2392.38	PASS	AC=1;AF=0.5;AN=2;DP=174;FS=0.559;FractionInformativeReads=1;MQ=60;MQRankSum=0.454;QD=13.75;ReadPosRankSum=1.049;SOR=0.765;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:80,94:174:99:2421,0,1967:38,42,43,51
chr2	21263639	.	T	G	270.93	PASS	AC=2;AF=0.767;AN=2;DP=750;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:440,33,0:0,0,10,1
chr2	21266932	.	G	C	805.22	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:833,0,960:18,24,17,20
chr2	21360583	.	A	G	1646.76	PASS	AC=1;AF=0.537;AN=2;DP=2937;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,64:146:99:1580,0,2261:35,47,33,31
chr2	21366324	.	G	C	118.42	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant18-variant20-variant24-variant25-variant26-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:227,0,145:0,4,0,6
chr2	23608319	.	A	AGCC,AGCCGCC	511.87	PASS	AC=1,0;AF=0.56,0.02;AN=2;DP=925;set=variant-variant4-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:46:99:19,10,11,6
chr2	23608644	.	C	CG	669.41	PASS	AC=2;AF=1;AN=2;DP=932;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1042,84,0:0,0,11,17
chr2	23785517	.	A	G	262.31	PASS	AC=2;AF=0.841;AN=2;DP=819;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:799,54,0:0,0,5,13
chr2	23785524	.	C	A	217.56	PASS	AC=2;AF=0.776;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:57:809,57,0:0,0,5,13
chr2	23859550	.	G	A	111.44	PASS	AC=1;AF=0.55;AN=2;DP=135;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant15-variant16-variant27-variant29-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:247,0,99:3,0,7,0
chr2	23860176	.	G	A	1192.16	PASS	AC=1;AF=0.556;AN=2;DP=981;MQ=60;set=variant7-variant13-variant15-variant16-variant27-variant29-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1299,0,1501:29,30,26,27
chr2	23865260	.	T	C	1265.87	PASS	AC=1;AF=0.775;AN=2;DP=5723;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,108:199:99:2695,0,2209:43,48,54,54
chr2	23907532	.	TCTC	T	403.74	PASS	AC=2;AF=0.849;AN=2;DP=2401;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2925,196,0:0,0,34,31
chr2	23919375	.	C	T	1618.03	PASS	AC=2;AF=0.712;AN=2;DP=2295;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2942,273,0:0,0,41,50
chr2	23919630	.	C	G	1606.93	PASS	AC=2;AF=0.712;AN=2;DP=1705;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1799,183,0:0,0,29,32
chr2	23920545	.	A	G	1400.81	PASS	AC=2;AF=0.712;AN=2;DP=1955;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1874,165,0:0,0,22,33
chr2	23920609	.	G	C	1047.47	PASS	AC=2;AF=1;AN=2;DP=1748;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1261,108,0:0,0,14,22
chr2	23920632	.	C	G	1082.37	PASS	AC=2;AF=0.813;AN=2;DP=1434;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1228,105,0:0,0,13,22
chr2	23920646	.	G	C	959.92	PASS	AC=2;AF=0.712;AN=2;DP=1103;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1105,99,0:0,0,13,20
chr2	23925980	.	T	C	1363.76	PASS	AC=2;AF=0.712;AN=2;DP=1461;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:992,93,0:0,0,20,11
chr2	23926659	.	T	C	5408.35	PASS	AC=2;AF=0.667;AN=2;DP=5811;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:5753,592,0:0,0,98,100
chr2	23930714	.	A	G	178.58	PASS	AC=2;AF=0.895;AN=2;DP=1865;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1929,177,0:0,0,36,23
chr2	23931036	.	C	T	3076.37	PASS	AC=2;AF=0.667;AN=2;DP=4003;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4460,444,0:0,0,63,85
chr2	23973799	.	T	C	11096.4	PASS	AC=2;AF=0.652;AN=2;DP=12515;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,490:490:99:15065,1468,0:0,0,239,251
chr2	24009163	.	A	G	861.96	PASS	AC=1;AF=0.574;AN=2;DP=2158;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,49:82:99:1380,0,836:13,20,18,31
chr2	24042550	.	C	T	907.81	PASS	AC=2;AF=0.966;AN=2;DP=1212;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1059,96,0:0,0,23,9
chr2	24055058	.	G	C	7125.65	PASS	AC=2;AF=0.955;AN=2;DP=8203;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5597,572,0:0,0,92,99
chr2	24079058	.	CA	C,CAA,CAAA,CAAAA	128.69	PASS	AC=1,0,0,0;AF=0.393,0.036,0.048,0.024;AN=2;DP=1949;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:52:99:27,7,16,2
chr2	24108652	.	T	C	3670.2	PASS	AC=2;AF=1;AN=2;DP=4396;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4530,435,0:0,0,76,69
chr2	24110911	.	G	GA	326.58	PASS	AC=1;AF=0.667;AN=2;DP=527;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant17-filterInvariant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:4:173,0,4:0,1,1,6
chr2	24149860	.	C	T	1567.88	PASS	AC=1;AF=0.5;AN=2;DP=584;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,83:178:99:1947,0,2293:48,47,39,44
chr2	24150503	.	A	AG,AGG	96.2	PASS	AC=0,1;AF=0.091,0.5;AN=2;DP=164;MQ=60;set=variant11-variant12-variant15-variant17-variant18-variant29-variant33-variant34-variant35-variant36-variant41	GT:DP:GQ:SB	0/2:8:81:2,3,2,1
chr2	24150513	.	G	GGA,GA,GGGA	293.82	PASS	AC=1,0,0;AF=0.694,0.028,0.028;AN=2;DP=257;set=variant2-variant3-variant8-variant11-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant31-variant32-variant36-variant37-variant42-variant44	GT:DP:GQ:SB	0/1:11:99:2,3,2,4
chr2	24163300	.	C	CCT	3089.99	PASS	AC=2;AF=0.672;AN=2;DP=1516;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2468,171,0:0,0,32,22
chr2	24191764	.	CT	C,CTT	51.61	PASS	AC=0,1;AF=0.462,0.115;AN=2;DP=258;MQ=60;set=variant-variant6-variant10-filterInvariant15-variant17-variant21-variant22-variant25-variant27-variant34-variant38-variant40-variant43	GT:DP:GQ:SB	0/2:18:81:1,10,4,3
chr2	24194314	.	C	T	545.41	PASS	AC=2;AF=0.75;AN=2;DP=877;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1392,126,0:0,0,15,27
chr2	24199711	.	G	A	604.25	PASS	AC=1;AF=0.5;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,26:39:99:709,0,348:9,4,16,10
chr2	24225621	.	T	C	598.06	PASS	AC=2;AF=0.845;AN=2;DP=852;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:934,93,0:0,0,16,15
chr2	24226593	.	CCAAAA	CAA,CA,C,CAAA	322.99	PASS	AC=1,1,0,0;AF=0.429,0.268,0.054,0.036;AN=2;DP=781;set=variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant42-variant44	GT:DP:GQ:SB	2/1:19:99:0,1,5,13
chr2	24227107	.	C	CTG	8473.78	PASS	AC=2;AF=0.826;AN=2;DP=7374;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:8497,569,0:0,0,97,91
chr2	24227480	.	T	C	414.76	PASS	AC=2;AF=0.821;AN=2;DP=191;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:325,30,0:0,0,7,3
chr2	24245957	.	G	T	1197.54	PASS	AC=1;AF=0.5;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant15-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,48:118:99:1226,0,2101:47,23,36,12
chr2	24246175	.	C	T	2483.98	PASS	AC=2;AF=0.826;AN=2;DP=3384;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3536,308,0:0,0,24,79
chr2	24246679	.	A	G	2371.08	PASS	AC=2;AF=0.826;AN=2;DP=3004;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3136,297,0:0,0,33,66
chr2	24252417	.	T	C	2570.52	PASS	AC=2;AF=0.721;AN=2;DP=3141;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:5184,358,0:0,0,49,67
chr2	24252436	.	A	G	2278.44	PASS	AC=2;AF=0.703;AN=2;DP=2796;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5097,358,0:0,0,54,64
chr2	24255862	.	C	G	1568.84	PASS	AC=2;AF=1;AN=2;DP=1618;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.867;ReadPosRankSum=0.124;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1438,117,0:0,0,18,21
chr2	24338777	.	CAAAA	CAA,CAAA,CA,C	98.98	PASS	AC=1,1,0,0;AF=0.214,0.393,0.071,0.018;AN=2;DP=500;set=variant2-variant3-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	1/2:22:99:1,3,2,16
chr2	24369674	.	C	T	2616.76	PASS	AC=2;AF=0.966;AN=2;DP=3877;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3746,366,0:0,0,68,54
chr2	24384424	.	T	C	2155.9	PASS	AC=2;AF=0.955;AN=2;DP=2975;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2343,236,0:0,0,48,31
chr2	24386925	.	C	CA	203.93	PASS	AC=1;AF=0.682;AN=2;DP=110;MQ=60;set=variant5-variant7-variant9-variant10-variant14-variant15-variant21-variant22-variant31-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:202,0,140:5,1,7,1
chr2	24387178	.	G	GC	1322.19	PASS	AC=2;AF=0.989;AN=2;DP=2183;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2400,195,0:0,0,26,38
chr2	24388096	.	G	A	370.97	PASS	AC=2;AF=0.955;AN=2;DP=1052;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:818,69,0:0,0,17,6
chr2	24390517	.	G	A	2588.3	PASS	AC=1;AF=0.782;AN=2;DP=3198;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1121,0,1100:19,17,21,23
chr2	24392618	.	T	C	2311.75	PASS	AC=1;AF=0.583;AN=2;DP=2553;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,80:160:99:2190,0,2344:22,58,21,59
chr2	24395269	.	T	C	693.41	PASS	AC=2;AF=0.955;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:400,30,0:0,0,9,1
chr2	24395294	.	T	C	1117.59	PASS	AC=2;AF=0.955;AN=2;DP=959;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:834,78,0:0,0,19,7
chr2	24395506	.	T	C	1247.37	PASS	AC=2;AF=0.955;AN=2;DP=1535;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1485,135,0:0,0,13,32
chr2	24397791	.	T	C	62.98	PASS	AC=2;AF=0.963;AN=2;DP=307;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:309,27,0:0,0,6,3
chr2	24397866	.	T	G	235.43	PASS	AC=2;AF=1;AN=2;DP=476;FS=0;MQ=60;MQRankSum=1.085;ReadPosRankSum=0.434;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:498,54,0:0,0,10,8
chr2	24398281	.	T	G	1376.21	PASS	AC=2;AF=0.966;AN=2;DP=1705;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1351,123,0:0,0,27,14
chr2	24398446	.	A	T	2518.06	PASS	AC=1;AF=0.775;AN=2;DP=3276;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:1215,0,1874:38,42,25,31
chr2	24400744	.	G	A	994	PASS	AC=1;AF=0.5;AN=2;DP=782;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant21-variant31-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,43:124:99:747,0,2142:42,39,21,22
chr2	24400769	.	A	C	1129.29	PASS	AC=1;AF=0.556;AN=2;DP=1880;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,42:124:99:733,0,2055:38,44,20,22
chr2	24402127	.	C	CAA	1942.88	PASS	AC=2;AF=0.989;AN=2;DP=2049;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2229,150,0:0,0,21,29
chr2	24413298	.	A	G	1116.97	PASS	AC=1;AF=0.556;AN=2;DP=1346;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,37:92:99:857,0,1320:25,30,18,19
chr2	24413595	.	C	T	1278.96	PASS	AC=1;AF=0.556;AN=2;DP=1587;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,45:105:99:1109,0,1505:33,27,24,21
chr2	24414002	.	A	G	6353.67	PASS	AC=1;AF=0.786;AN=2;DP=6906;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,106:189:99:2694,0,1974:43,40,63,43
chr2	24414400	.	A	G	2408.73	PASS	AC=1;AF=0.553;AN=2;DP=4862;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,143:302:99:3375,0,4231:83,76,79,64
chr2	24425620	.	A	G	277.08	PASS	AC=1;AF=0.553;AN=2;DP=344;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:175,0,362:9,0,5,0
chr2	24428859	.	T	C	775.47	PASS	AC=1;AF=0.548;AN=2;DP=1053;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:789,0,964:27,10,22,7
chr2	24429234	.	CCCGGCGGGAAGGAAGGTGGAGATGCAGGGGG	C	362.16	PASS	AC=1;AF=0.531;AN=2;DP=508;MQ=60;set=variant5-variant7-variant10-variant13-variant14-variant15-variant18-variant21-variant22-variant28-variant31-variant32-variant33-variant34-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:557,0,2355:2,7,5,10
chr2	24431184	.	C	T	777.95	PASS	AC=1;AF=0.553;AN=2;DP=1601;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1034,0,1288:29,22,23,21
chr2	24432138	.	C	T	1771.61	PASS	AC=1;AF=0.553;AN=2;DP=2117;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,71:133:99:1846,0,1521:25,37,31,40
chr2	24432211	.	C	T	1493.3	PASS	AC=2;AF=0.977;AN=2;DP=2156;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1738,144,0:0,0,14,34
chr2	24432620	.	A	G	1080.14	PASS	AC=1;AF=0.762;AN=2;DP=1464;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,25:44:99:776,0,509:15,4,19,6
chr2	24432667	.	C	G	2316.73	PASS	AC=2;AF=0.977;AN=2;DP=3393;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3184,300,0:0,0,67,33
chr2	24432839	.	A	G	1181.15	PASS	AC=1;AF=0.553;AN=2;DP=1854;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,64:130:99:1630,0,1567:28,38,22,42
chr2	24432937	.	C	T	105.41	PASS	AC=1;AF=0.553;AN=2;DP=256;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:321,0,542:1,14,0,9
chr2	24435837	.	T	C	112.23	PASS	AC=1;AF=0.577;AN=2;DP=108;MQ=60;set=variant9-variant10-variant14-variant15-variant16-variant21-variant22-variant28-variant31-variant32-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:90:255,0,90:2,1,0,7
chr2	24439276	.	G	C	150.23	PASS	AC=1;AF=0.565;AN=2;DP=330;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant25-variant31-variant32-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:509,0,280:2,7,3,12
chr2	24440997	.	A	T	556.6	PASS	AC=2;AF=0.989;AN=2;DP=1127;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1060,84,0:0,0,5,23
chr2	24443271	.	C	A	11570.4	PASS	AC=1;AF=0.786;AN=2;DP=13105;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,185:372:99:4298,0,4680:99,88,103,82
chr2	24443330	.	A	G	10382.7	PASS	AC=1;AF=0.762;AN=2;DP=11380;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:188,161:349:99:3853,0,4634:88,100,74,87
chr2	24475205	.	T	C	2877.97	PASS	AC=2;AF=1;AN=2;DP=3175;FS=0;MQ=60;MQRankSum=1.254;ReadPosRankSum=0.856;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3535,353,0:0,0,74,44
chr2	24484150	.	T	C	1319.12	PASS	AC=2;AF=0.989;AN=2;DP=1464;MQ=60;MQRankSum=-1.183;ReadPosRankSum=1.25;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1117,105,0:0,0,11,24
chr2	24498839	.	T	G	287.46	PASS	AC=2;AF=0.989;AN=2;DP=404;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;ReadPosRankSum=-0.922;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:335,24,0:0,0,0,8
chr2	24507757	.	ATTTT	ATT,A,AT,ATTT	392.18	PASS	AC=1,0,0,0;AF=0.257,0.1,0.229,0.043;AN=2;DP=1535;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:21:29:3,1,1,16
chr2	24509370	.	T	C	359.41	PASS	AC=1;AF=0.553;AN=2;DP=502;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:495,0,427:3,11,3,12
chr2	24521493	.	C	T	1619.58	PASS	AC=2;AF=0.989;AN=2;DP=2176;FS=0;MQ=60;MQRankSum=0.991;ReadPosRankSum=-1.664;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2094,194,0:0,0,45,20
chr2	24521766	.	C	T	498.96	PASS	AC=2;AF=0.989;AN=2;DP=617;FS=0;MQ=60;MQRankSum=0.727;ReadPosRankSum=-0.727;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:811,66,0:0,0,5,17
chr2	24522800	.	C	T	560.89	PASS	AC=1;AF=0.5;AN=2;DP=69;FractionInformativeReads=1;MQ=60;set=variant15-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:589,0,508:13,3,15,5
chr2	24524725	.	A	G	204.41	PASS	AC=1;AF=0.553;AN=2;DP=538;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:326,0,578:15,3,9,4
chr2	24524958	.	C	T	1107.08	PASS	AC=1;AF=0.548;AN=2;DP=1799;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant28-variant31-variant32-variant34-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1005,0,1255:10,32,16,25
chr2	24550867	.	CAA	CA,C	878.68	PASS	AC=2,0;AF=0.898,0.08;AN=2;DP=2275;set=Intersection	GT:DP:GQ:SB	1/1:48:99:1,1,31,15
chr2	24583108	.	G	A	111.22	PASS	AC=2;AF=0.989;AN=2;DP=811;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:53:545,53,0:0,0,13,5
chr2	24583119	.	G	C	275.4	PASS	AC=2;AF=0.989;AN=2;DP=918;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:846,69,0:0,0,17,6
chr2	24583198	.	T	A	1307.3	PASS	AC=2;AF=0.989;AN=2;DP=2206;MQ=60;MQRankSum=-2.775;ReadPosRankSum=1.808;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2168,241,0:0,0,44,37
chr2	24583398	.	C	T	955.42	PASS	AC=2;AF=0.989;AN=2;DP=1551;MQ=60;MQRankSum=0.529;ReadPosRankSum=2.304;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1054,99,0:0,0,16,17
chr2	24583475	.	C	T	1705	PASS	AC=2;AF=0.989;AN=2;DP=2526;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2315,235,0:0,0,48,31
chr2	24583677	.	A	G	1178.6	PASS	AC=2;AF=0.989;AN=2;DP=1676;MQ=60;MQRankSum=0.568;ReadPosRankSum=0.178;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1232,117,0:0,0,13,26
chr2	24583719	.	G	C	785.95	PASS	AC=2;AF=0.989;AN=2;DP=895;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:745,60,0:0,0,4,16
chr2	24714831	.	G	T	121.72	PASS	AC=2;AF=0.69;AN=2;DP=415;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant18-variant21-variant22-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:415,44,0:0,0,9,6
chr2	24807533	.	C	T	4308.24	PASS	AC=2;AF=0.898;AN=2;DP=4910;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4242,419,0:0,0,51,89
chr2	24896389	.	T	G	886.26	PASS	AC=2;AF=0.722;AN=2;DP=2129;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2277,207,0:0,0,20,49
chr2	24905684	.	C	CA	1256.12	PASS	AC=2;AF=0.92;AN=2;DP=858;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:968,72,0:0,0,24,0
chr2	24905927	.	G	C	5546.63	PASS	AC=2;AF=0.884;AN=2;DP=8579;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6435,653,0:0,0,84,134
chr2	24933689	.	A	C	713.62	PASS	AC=2;AF=0.884;AN=2;DP=1159;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1308,99,0:0,0,29,4
chr2	24952740	.	C	CT	1067.7	PASS	AC=2;AF=0.92;AN=2;DP=2332;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2257,168,0:0,0,12,44
chr2	24974945	.	T	G	1930.25	PASS	AC=2;AF=0.884;AN=2;DP=3514;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3022,291,0:0,0,49,48
chr2	25013062	.	T	C	2612.09	PASS	AC=2;AF=0.617;AN=2;DP=6297;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:7920,735,0:0,0,131,114
chr2	25022442	.	TA	T	1010.49	PASS	AC=2;AF=0.8;AN=2;DP=883;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,28:30:36:677,36,0:1,1,17,11
chr2	25037042	.	G	A	275.88	PASS	AC=2;AF=0.712;AN=2;DP=327;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant22-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:478,36,0:0,0,11,1
chr2	25039804	.	G	A	1178.11	PASS	AC=2;AF=0.92;AN=2;DP=1188;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1101,96,0:0,0,7,25
chr2	25040423	.	G	A	775.03	PASS	AC=2;AF=0.763;AN=2;DP=1900;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1905,156,0:0,0,38,14
chr2	25042625	.	C	G	2164.74	PASS	AC=2;AF=0.895;AN=2;DP=4625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3605,353,0:0,0,54,64
chr2	25044754	.	A	G	982.24	PASS	AC=2;AF=0.686;AN=2;DP=2268;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2300,157,0:0,0,22,28
chr2	25044755	.	C	T	982.24	PASS	AC=2;AF=0.686;AN=2;DP=2248;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2345,160,0:0,0,22,28
chr2	25044763	.	A	G	862.29	PASS	AC=2;AF=0.686;AN=2;DP=2182;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2295,159,0:0,0,25,28
chr2	25046090	.	T	C	821.77	PASS	AC=2;AF=0.784;AN=2;DP=1073;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:995,87,0:0,0,21,8
chr2	25046355	.	T	C	410.02	PASS	AC=2;AF=0.691;AN=2;DP=866;set=variant-variant2-variant3-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1128,90,0:0,0,8,22
chr2	25046361	.	AT	ATTT,ATT,A,ATTTT	530.92	PASS	AC=0,2,0,0;AF=0.229,0.329,0.071,0.014;AN=2;DP=767;set=variant-variant2-variant3-variant5-variant7-variant8-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:25:84:0,0,6,19
chr2	25047408	.	A	G	1089.02	PASS	AC=2;AF=0.632;AN=2;DP=5604;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6125,612,0:0,0,87,117
chr2	25048847	.	A	G	976.64	PASS	AC=2;AF=0.784;AN=2;DP=2435;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2595,246,0:0,0,55,27
chr2	25050977	.	T	C	1164.96	PASS	AC=2;AF=0.784;AN=2;DP=2844;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2536,246,0:0,0,31,51
chr2	25057263	.	G	A	193.54	PASS	AC=2;AF=0.667;AN=2;DP=344;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:677,60,0:0,0,14,6
chr2	25061810	.	ATT	AT,ATTT,A	471.61	PASS	AC=1,0,0;AF=0.452,0.016,0.065;AN=2;DP=1881;set=variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant23-filterInvariant27-variant28-variant29-variant31-variant32-variant34-variant36-filterInvariant37-variant39-filterInvariant40-variant41-filterInvariant44	GT:DP:GQ:SB	0/1:27:99:3,13,1,10
chr2	25064079	.	G	A	46.75	PASS	AC=2;AF=0.595;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant21-variant22-variant24-variant28-variant29-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:166,15,0:0,0,4,1
chr2	25064193	.	G	A	1028.93	PASS	AC=2;AF=0.65;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1247,125,0:0,0,24,18
chr2	25141982	.	C	G	1792.61	PASS	AC=1;AF=0.5;AN=2;DP=336;MQ=60;set=variant15-variant29-variant37	GT:AD:DP:GQ:PL:SB	0/1:54,65:119:99:1821,0,1492:31,23,34,31
chr2	25194741	.	G	A	3578.25	PASS	AC=2;AF=0.814;AN=2;DP=14128;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,371:371:99:11172,1108,0:0,0,163,208
chr2	25314186	.	T	C	2047.26	PASS	AC=2;AF=0.703;AN=2;DP=2653;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2541,249,0:0,0,38,45
chr2	25338744	.	T	A	122.24	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant29-variant37	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:150,0,73:1,1,4,0
chr2	25344464	.	G	A	396.89	PASS	AC=1;AF=0.567;AN=2;DP=395;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant9-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant26-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:408,0,804:21,3,12,1
chr2	25359254	.	C	T	363.76	PASS	AC=1;AF=0.556;AN=2;DP=475;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant13-variant15-variant16-variant18-variant21-variant23-variant26-variant28-variant30-variant32-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:355,0,608:16,4,10,1
chr2	25362194	.	G	A	232.47	PASS	AC=1;AF=0.556;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:502,0,620:7,14,6,12
chr2	25368005	.	G	A	497.41	PASS	AC=1;AF=0.556;AN=2;DP=657;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:487,0,307:3,8,7,12
chr2	25368030	.	T	C	616.16	PASS	AC=1;AF=0.556;AN=2;DP=704;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:500,0,481:8,9,8,11
chr2	25369002	.	C	T	464.98	PASS	AC=1;AF=0.556;AN=2;DP=611;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:575,0,735:12,14,7,16
chr2	25369040	.	C	T	551.49	PASS	AC=1;AF=0.556;AN=2;DP=750;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:579,0,617:10,12,11,11
chr2	25369369	.	T	G	384.77	PASS	AC=1;AF=0.553;AN=2;DP=1009;MQ=60;set=variant-variant6-variant7-variant9-variant12-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:34,42:76:99:1159,0,863:18,16,21,21
chr2	25370016	.	C	T	348.79	PASS	AC=1;AF=0.553;AN=2;DP=1248;MQ=60;set=variant-variant6-variant7-variant9-variant12-variant15-variant17-variant19-variant20-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:33,38:71:99:976,0,806:18,15,21,17
chr2	25370616	.	G	A	264.29	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant15-variant29-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:293,0,217:1,6,3,8
chr2	25375105	.	T	C	337.44	PASS	AC=1;AF=0.764;AN=2;DP=540;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:342,0,355:1,8,2,8
chr2	25377176	.	T	C	1988.41	PASS	AC=1;AF=0.708;AN=2;DP=7255;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,123:249:99:3193,0,3217:56,70,58,65
chr2	25377329	.	C	T	970.55	PASS	AC=1;AF=0.556;AN=2;DP=1694;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:49,73:122:99:1914,0,1220:16,33,29,44
chr2	25387858	.	G	GACC	322.73	PASS	AC=2;AF=0.857;AN=2;DP=590;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:765,51,0:0,0,4,13
chr2	25456647	.	CA	C	273.12	PASS	AC=2;AF=0.629;AN=2;DP=1051;set=variant-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,26:27:54:657,54,0:1,0,22,4
chr2	25458379	.	G	A	35.5	PASS	AC=2;AF=0.636;AN=2;DP=611;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:607,51,0:0,0,14,3
chr2	25458546	.	C	T	617.15	PASS	AC=2;AF=0.636;AN=2;DP=3545;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4155,413,0:0,0,73,65
chr2	25458853	.	A	G	343.28	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant22-variant32	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:209,0,193:0,5,1,6
chr2	25463483	.	G	A	232.04	PASS	AC=1;AF=0.618;AN=2;DP=1993;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:879,0,765:18,10,21,12
chr2	25466888	.	G	T	977.59	PASS	AC=2;AF=0.733;AN=2;DP=2331;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2328,239,0:0,0,35,45
chr2	25469913	.	C	T	691.27	PASS	AC=2;AF=0.733;AN=2;DP=2956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3067,284,0:0,0,61,34
chr2	25472784	.	C	T	1222.53	PASS	AC=2;AF=0.733;AN=2;DP=1096;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1539,132,0:0,0,11,33
chr2	25497684	.	A	AC	524.34	PASS	AC=2;AF=0.691;AN=2;DP=1028;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1615,120,0:0,0,29,11
chr2	25498283	.	A	C	198.42	PASS	AC=1;AF=0.5;AN=2;DP=1216;set=variant-variant2-filterInvariant3-variant4-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant27-variant29-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:317,0,937:6,20,14,0
chr2	25498287	.	T	C	430	PASS	AC=1;AF=0.5;AN=2;DP=1384;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant22-variant23-filterInvariant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,13:42:99:212,0,1425:7,22,13,0
chr2	25498290	.	G	C	418.43	PASS	AC=1;AF=0.5;AN=2;DP=1455;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-filterInvariant19-variant20-filterInvariant22-variant23-variant24-filterInvariant25-variant27-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,15:47:99:469,0,1569:10,22,15,0
chr2	25498296	.	T	C	405.44	PASS	AC=1;AF=0.5;AN=2;DP=1396;set=variant-filterInvariant3-variant7-variant9-variant12-variant13-variant15-variant16-variant17-filterInvariant19-variant20-variant22-variant24-filterInvariant25-variant27-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,15:51:99:454,0,1727:13,23,15,0
chr2	25498298	.	A	C	55.18	PASS	AC=1;AF=0.5;AN=2;DP=1236;set=filterInvariant-filterInvariant3-variant7-variant9-filterInvariant11-variant12-variant13-variant15-variant16-filterInvariant17-filterInvariant19-variant20-variant22-variant24-variant27-variant29-variant31-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,13:52:99:457,0,1693:15,24,13,0
chr2	25523196	.	T	C	1184.67	PASS	AC=2;AF=0.6;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant26-variant29-variant36	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1213,99,0:0,0,6,27
chr2	25602142	.	G	A	3121.95	PASS	AC=2;AF=0.773;AN=2;DP=2661;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3003,297,0:0,0,61,38
chr2	25655446	.	T	G	350.28	PASS	AC=2;AF=0.828;AN=2;DP=541;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:517,45,0:0,0,12,3
chr2	25655772	.	T	C	2077.41	PASS	AC=2;AF=0.605;AN=2;DP=3080;MQ=60;set=variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant23-variant26-variant27-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:6217,566,0:0,0,93,96
chr2	25656880	.	C	G	1835.45	PASS	AC=2;AF=0.875;AN=2;DP=2055;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2607,195,0:0,0,21,44
chr2	25656889	.	G	GT	316.08	PASS	AC=2;AF=0.526;AN=2;DP=691;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant14-variant15-variant18-variant21-variant23-variant29-variant30-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:2,42:44:75:1026,75,0:1,1,11,31
chr2	25754235	.	T	C	573.32	PASS	AC=2;AF=0.588;AN=2;DP=616;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant19-variant29-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1573,140,0:0,0,35,12
chr2	25961583	.	A	G	1590.69	PASS	AC=1;AF=0.5;AN=2;DP=4003;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,97:182:99:2459,0,2175:43,42,53,44
chr2	25962238	.	GT	GTT,G	1699.51	PASS	AC=0,1;AF=0.468,0.032;AN=2;DP=8640;set=variant2-filterInvariant3-variant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-variant19-filterInvariant21-filterInvariant22-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-variant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/2:269:99:114,119,21,15
chr2	25973309	.	C	T	388.29	PASS	AC=1;AF=0.536;AN=2;DP=859;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:602,0,492:5,13,5,16
chr2	25990640	.	T	C	589.9	PASS	AC=1;AF=0.5;AN=2;DP=754;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant15-variant17-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:1013,0,838:10,22,9,25
chr2	25994412	.	A	AG	1223.58	PASS	AC=1;AF=0.5;AN=2;DP=3868;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:104,99:203:99:2637,0,2891:60,44,50,49
chr2	26003068	.	C	T	281.63	PASS	AC=1;AF=0.568;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant31-variant33-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,245:6,1,3,1
chr2	26003230	.	A	G	234.06	PASS	AC=1;AF=0.5;AN=2;DP=522;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:229,0,311:4,7,4,6
chr2	26068509	.	C	T	309.04	PASS	AC=1;AF=0.571;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant11-variant15-variant17-variant19-variant21-variant23-variant26-variant31-variant33-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:63:63,0,147:2,4,0,2
chr2	26082046	.	GT	G	185.85	PASS	AC=1;AF=0.605;AN=2;DP=194;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant15-variant17-variant20-variant21-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:91:91,0,129:2,2,2,1
chr2	26082057	.	T	C	459.21	PASS	AC=2;AF=0.878;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:23:269,23,0:0,0,4,4
chr2	26082212	.	T	C	408.18	PASS	AC=1;AF=0.5;AN=2;DP=509;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:549,0,243:6,5,13,7
chr2	26101403	.	A	C	326.24	PASS	AC=1;AF=0.5;AN=2;DP=598;MQ=60;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:345,0,557:5,13,7,11
chr2	26149502	.	A	G	304.59	PASS	AC=2;AF=0.78;AN=2;DP=758;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:602,66,0:0,0,9,13
chr2	26149968	.	C	T	2048.05	PASS	AC=2;AF=1;AN=2;DP=3844;FS=0;MQ=60;MQRankSum=1.643;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:5265,373,0:0,0,61,62
chr2	26149988	.	G	C	668.06	PASS	AC=2;AF=0.768;AN=2;DP=3774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:5305,375,0:0,0,57,66
chr2	26150589	.	G	T	10344.9	PASS	AC=2;AF=0.872;AN=2;DP=13054;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,356:356:99:10708,1064,0:0,0,201,155
chr2	26150773	.	T	G	9344.7	PASS	AC=2;AF=0.872;AN=2;DP=11087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,308:308:99:9669,922,0:0,0,133,175
chr2	26151206	.	T	C	1357.46	PASS	AC=2;AF=0.953;AN=2;DP=2506;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2158,204,0:0,0,36,32
chr2	26151643	.	A	T	758.86	PASS	AC=2;AF=0.857;AN=2;DP=1317;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1045,90,0:0,0,14,16
chr2	26161226	.	CA	CAA,C	214.03	PASS	AC=1,0;AF=0.526,0.026;AN=2;DP=982;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-filterInvariant35-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:20:75:5,1,8,6
chr2	26174882	.	T	C	853.94	PASS	AC=1;AF=0.529;AN=2;DP=1514;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant18-variant25-variant26-variant27-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,51:115:99:1148,0,1607:28,36,18,33
chr2	26176947	.	C	A	523.14	PASS	AC=1;AF=0.5;AN=2;DP=160;MQ=60;set=variant9-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:631,0,1011:21,16,15,13
chr2	26203678	.	T	C	4287.94	PASS	AC=2;AF=1;AN=2;DP=8006;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,185:186:99:5995,546,0:0,1,105,80
chr2	26204640	.	G	A	7604.18	PASS	AC=1;AF=0.712;AN=2;DP=7881;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:167,151:318:99:3709,0,4024:82,85,69,82
chr2	26205081	.	A	T	3274.84	PASS	AC=2;AF=1;AN=2;DP=4704;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4118,405,0:0,0,82,54
chr2	26257249	.	C	G	7173.16	PASS	AC=2;AF=1;AN=2;DP=5774;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:6175,418,0:0,0,57,82
chr2	26257250	.	G	C	7173.16	PASS	AC=2;AF=1;AN=2;DP=5696;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:6175,418,0:0,0,56,81
chr2	26321526	.	T	C	605.88	PASS	AC=2;AF=0.782;AN=2;DP=1841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2249,216,0:0,0,42,30
chr2	26350136	.	G	T	1154.69	PASS	AC=2;AF=0.782;AN=2;DP=2903;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:2996,314,0:0,0,47,58
chr2	26357748	.	G	T	825.3	PASS	AC=2;AF=0.789;AN=2;DP=2333;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2410,231,0:0,0,52,25
chr2	26358110	.	G	C	1906.01	PASS	AC=2;AF=0.797;AN=2;DP=5501;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4634,441,0:0,0,64,83
chr2	26359128	.	T	A	2858	PASS	AC=1;AF=0.5;AN=2;DP=799;MQ=60;set=variant15-variant16-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,137:250:99:2886,0,2694:43,70,63,74
chr2	26359315	.	G	A	2717.79	PASS	AC=2;AF=0.795;AN=2;DP=6902;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:6981,648,0:0,0,135,82
chr2	26399214	.	G	A	472.82	PASS	AC=2;AF=0.75;AN=2;DP=4584;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3466,369,0:0,0,63,61
chr2	26399481	.	C	G	90.18	PASS	AC=1;AF=0.743;AN=2;DP=919;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:376,0,477:7,11,2,10
chr2	26403750	.	G	A	645.79	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.179;FractionInformativeReads=1;MQ=60;MQRankSum=1.028;QD=12.66;ReadPosRankSum=1.84;SOR=0.913;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:674,0,765:19,8,18,6
chr2	26403766	.	G	A	1274.93	PASS	AC=2;AF=0.833;AN=2;DP=1800;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2258,180,0:0,0,40,19
chr2	26404221	.	C	T	2318.02	PASS	AC=2;AF=0.833;AN=2;DP=2689;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2277,215,0:0,0,35,37
chr2	26404510	.	T	G	764.93	PASS	AC=1;AF=0.5;AN=2;DP=83;FractionInformativeReads=1;MQ=60;set=variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:15,31:46:99:793,0,449:4,11,13,18
chr2	26404775	.	A	G	453.55	PASS	AC=2;AF=0.851;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:341,30,0:0,0,7,3
chr2	26405016	.	C	G	1834.35	PASS	AC=2;AF=0.833;AN=2;DP=3463;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3315,320,0:0,0,56,51
chr2	26405985	.	A	G	534.3	PASS	AC=2;AF=0.833;AN=2;DP=1252;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1355,123,0:0,0,12,29
chr2	26408064	.	T	C	983.58	PASS	AC=2;AF=0.955;AN=2;DP=1212;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:579,51,0:0,0,8,9
chr2	26411894	.	C	T	1800.17	PASS	AC=2;AF=0.821;AN=2;DP=3113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3033,278,0:0,0,51,42
chr2	26412563	.	AAAC	A	583.7	PASS	AC=2;AF=0.833;AN=2;DP=707;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:945,63,0:0,0,7,14
chr2	26412638	.	G	T	196.77	PASS	AC=2;AF=0.857;AN=2;DP=277;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:383,30,0:0,0,2,8
chr2	26413917	.	C	T	782.79	PASS	AC=2;AF=0.833;AN=2;DP=1031;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:915,93,0:0,0,14,17
chr2	26415093	.	A	C	726.96	PASS	AC=1;AF=0.5;AN=2;DP=94;MQ=60;set=variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:22,33:55:99:755,0,545:15,7,21,12
chr2	26415429	.	A	G	680.97	PASS	AC=2;AF=0.833;AN=2;DP=661;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:738,60,0:0,0,4,16
chr2	26416301	.	A	G	1197.5	PASS	AC=2;AF=0.833;AN=2;DP=1879;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1135,102,0:0,0,22,12
chr2	26417533	.	C	A	553.53	PASS	AC=2;AF=0.833;AN=2;DP=638;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:818,63,0:0,0,5,16
chr2	26420708	.	T	G	2286.71	PASS	AC=2;AF=0.833;AN=2;DP=3306;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2714,276,0:0,0,38,54
chr2	26420809	.	G	C	455.3	PASS	AC=2;AF=0.842;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:659,48,0:0,0,1,15
chr2	26454996	.	A	G	911.8	PASS	AC=1;AF=0.829;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:341,0,383:11,2,9,1
chr2	26467666	.	G	A	2035.46	PASS	AC=1;AF=0.829;AN=2;DP=2303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,50:74:99:1397,0,642:11,13,26,24
chr2	26476977	.	A	G	2102.4	PASS	AC=1;AF=0.977;AN=2;DP=3188;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:1262,0,1423:37,8,34,6
chr2	26477125	.	G	GACT	17279.8	PASS	AC=1;AF=0.977;AN=2;DP=15219;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:260,192:452:99:7277,0,11366:120,140,88,104
chr2	26484080	.	A	AC,ACC	403.06	PASS	AC=0,1;AF=0.191,0.559;AN=2;DP=771;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:14:99:0,5,2,7
chr2	26500101	.	CTTT	CTT,C,CT,CTTTT,CTTTTT	46.22	PASS	AC=1,0,0,0,0;AF=0.204,0.056,0.259,0.056,0.019;AN=2;DP=1094;MQ=60;set=filterInvariant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant13-variant15-variant17-variant19-variant20-variant21-variant22-variant25-filterInvariant26-variant28-variant33-variant34-variant35-variant37-variant38-variant41-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/1:21:76:2,5,6,8
chr2	26507076	.	A	T	1253.71	PASS	AC=1;AF=0.5;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:86,51:137:99:1282,0,2151:46,40,28,23
chr2	26512957	.	G	C	11413	PASS	AC=1;AF=0.977;AN=2;DP=11530;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:172,137:309:99:3661,0,4790:90,82,70,67
chr2	26532491	.	G	T	1336.53	PASS	AC=2;AF=0.732;AN=2;DP=4487;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4169,409,0:0,0,61,76
chr2	26532735	.	G	A	882.19	PASS	AC=2;AF=0.713;AN=2;DP=2982;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3589,309,0:0,0,72,31
chr2	26533023	.	C	T	844.36	PASS	AC=2;AF=0.713;AN=2;DP=4320;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3640,347,0:0,0,47,69
chr2	26534801	.	G	A	1173.68	PASS	AC=2;AF=0.725;AN=2;DP=3146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2883,263,0:0,0,35,53
chr2	26536555	.	T	C	584.33	PASS	AC=2;AF=0.744;AN=2;DP=1283;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1122,93,0:0,0,15,16
chr2	26536694	.	C	T	487.73	PASS	AC=2;AF=0.732;AN=2;DP=4005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2954,298,0:0,0,60,40
chr2	26537499	.	A	C	968.27	PASS	AC=2;AF=0.966;AN=2;DP=4290;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2906,264,0:0,0,25,63
chr2	26541158	.	G	A	145.31	PASS	AC=1;AF=0.965;AN=2;DP=272;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:102,0,229:1,6,0,3
chr2	26542143	.	A	G	184.68	PASS	AC=2;AF=0.988;AN=2;DP=281;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.067;ReadPosRankSum=0.572;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:433,30,0:0,0,0,10
chr2	26606154	.	T	C	610.47	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant15-variant29-variant35	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:639,0,937:18,19,16,11
chr2	26606347	.	T	A	524.32	PASS	AC=1;AF=0.734;AN=2;DP=872;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:415,0,443:8,10,8,10
chr2	26607815	.	T	C	987.8	PASS	AC=1;AF=0.5;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant15-variant29-variant35	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:1016,0,899:22,14,25,12
chr2	26607992	.	T	C	2001.51	PASS	AC=2;AF=0.966;AN=2;DP=2000;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2124,192,0:0,0,15,49
chr2	26612465	.	G	A	5728.83	PASS	AC=1;AF=0.734;AN=2;DP=12538;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:266,250:516:99:6526,0,6954:128,138,112,138
chr2	26613056	.	C	T	18703.2	PASS	AC=2;AF=1;AN=2;DP=21909;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,642:643:99:19636,1917,0:0,1,306,336
chr2	26613943	.	ATT	A	9392.42	PASS	AC=2;AF=1;AN=2;DP=8586;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:10420,699,0:0,0,136,96
chr2	26613974	.	C	T	7776.14	PASS	AC=2;AF=0.966;AN=2;DP=9747;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,283:283:99:8859,847,0:0,0,160,123
chr2	26614583	.	T	TA	8545.9	PASS	AC=2;AF=0.966;AN=2;DP=11077;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,286:286:99:8951,869,0:0,0,175,111
chr2	26615902	.	G	A	3457.08	PASS	AC=1;AF=0.734;AN=2;DP=7668;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:132,175:307:99:4381,0,3332:72,60,94,81
chr2	26616356	.	A	G	551.2	PASS	AC=1;AF=0.734;AN=2;DP=1082;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:695,0,705:15,12,11,13
chr2	26616401	.	A	T	1012.15	PASS	AC=2;AF=0.966;AN=2;DP=1443;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1521,144,0:0,0,27,21
chr2	26616624	.	G	C	804.1	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;MQ=60;set=variant15-variant29-variant35	GT:AD:DP:GQ:PL:SB	0/1:14,36:50:99:832,0,309:9,5,19,17
chr2	26617209	.	A	G	194.2	PASS	AC=1;AF=0.759;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:34:107,0,34:1,1,3,0
chr2	26618543	.	G	A	4345.87	PASS	AC=1;AF=0.734;AN=2;DP=8904;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,176:336:99:4212,0,3660:75,85,84,92
chr2	26625042	.	C	A	173.4	PASS	AC=1;AF=0.721;AN=2;DP=735;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:154,0,490:7,11,2,6
chr2	26647277	.	T	G	655.8	PASS	AC=1;AF=0.93;AN=2;DP=2413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:652,0,895:11,23,8,17
chr2	26652671	.	A	G	907.03	PASS	AC=1;AF=0.965;AN=2;DP=1104;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:382,0,307:7,8,6,10
chr2	26653457	.	G	A	6755.21	PASS	AC=1;AF=0.757;AN=2;DP=6446;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,122:222:99:3095,0,2596:58,42,68,54
chr2	26663187	.	TTG	TTGTG,TTGTGTG,T,TTGTGTGTG,TTGTGTGTGTG	159.32	PASS	AC=0,1,0,0,0;AF=0.317,0.463,0.073,0.012,0.012;AN=2;DP=408;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:7:99:2,0,4,1
chr2	26663215	.	A	G	51.02	PASS	AC=1;AF=0.72;AN=2;DP=374;set=variant-variant2-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant30-variant31-variant33-variant34-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:165,0,179:3,0,4,1
chr2	26667615	.	T	C	4168.54	PASS	AC=2;AF=1;AN=2;DP=6645;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5069,495,0:0,0,103,62
chr2	26671092	.	CA	CAAAA,CAA,C,CAAA	30.68	PASS	AC=0,1,0,0;AF=0.017,0.397,0.086,0.052;AN=2;DP=513;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant39-variant40-variant43	GT:DP:GQ:SB	0/2:15:99:8,2,3,2
chr2	26671544	.	A	G	1679.37	PASS	AC=1;AF=0.893;AN=2;DP=4339;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,52:121:99:1301,0,1659:38,31,23,29
chr2	26673658	.	T	C	34.68	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant15	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:60:60,0,845:3,5,1,1
chr2	26676322	.	A	G	852.9	PASS	AC=2;AF=1;AN=2;DP=2128;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2131,189,0:0,0,24,39
chr2	26676395	.	G	T	586.38	PASS	AC=1;AF=0.5;AN=2;DP=131;MQ=60;set=variant15-variant29-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:11,24:35:99:615,0,259:3,8,9,15
chr2	26677303	.	G	T	1109.41	PASS	AC=1;AF=0.955;AN=2;DP=1518;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:358,0,490:11,7,8,8
chr2	26677810	.	A	G	171.09	PASS	AC=1;AF=0.869;AN=2;DP=1383;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,31:54:99:1012,0,642:15,8,20,11
chr2	26678169	.	G	A	116.96	PASS	AC=1;AF=0.5;AN=2;DP=69;FractionInformativeReads=1;MQ=60;set=variant15-variant29-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:145,0,150:0,4,3,4
chr2	26687908	.	G	A	2025.84	PASS	AC=1;AF=0.5;AN=2;DP=189;FS=0.532;FractionInformativeReads=1;MQ=60;MQRankSum=-1.231;QD=10.72;ReadPosRankSum=2.946;SOR=0.639;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:99,90:189:99:2054,0,2597:47,52,44,46
chr2	26693934	.	A	G	791.52	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=2.635;FractionInformativeReads=1;MQ=60;MQRankSum=-1.821;QD=16.49;ReadPosRankSum=-1.565;SOR=1.148;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:820,0,441:11,7,21,9
chr2	26693967	.	C	T	1118.17	PASS	AC=1;AF=0.625;AN=2;DP=227;MQ=60;set=variant15-variant29-variant30-variant33	GT:AD:DP:GQ:PL:SB	0/1:22,46:68:99:1146,0,515:12,10,28,18
chr2	26698682	.	G	T	331.6	PASS	AC=1;AF=0.646;AN=2;DP=1122;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant9-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:684,0,705:19,6,18,9
chr2	26699126	.	C	G	327.77	PASS	AC=1;AF=0.629;AN=2;DP=2619;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,55:109:99:1418,0,1392:20,34,22,33
chr2	26699855	.	G	C	695.52	PASS	AC=1;AF=0.646;AN=2;DP=1705;MQ=60;set=variant-variant4-variant8-variant9-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1373,0,1417:28,25,27,23
chr2	26700700	.	G	A	1140.36	PASS	AC=1;AF=0.635;AN=2;DP=3330;MQ=60;set=variant-variant4-variant8-variant9-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,79:159:99:1895,0,2044:36,44,31,48
chr2	26700819	.	TGG	T	1666.74	PASS	AC=1;AF=0.629;AN=2;DP=2965;set=variant-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,48:111:99:1799,0,2393:25,38,21,27
chr2	26700908	.	C	G	825.24	PASS	AC=1;AF=0.629;AN=2;DP=2536;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1361,0,1142:21,20,21,28
chr2	26702057	.	GT	G	211.36	PASS	AC=1;AF=0.646;AN=2;DP=701;MQ=60;set=variant-variant4-variant8-variant9-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:411,0,744:17,6,9,5
chr2	26717641	.	A	G	238.34	PASS	AC=1;AF=0.641;AN=2;DP=1058;MQ=60;set=variant-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:474,0,621:16,6,12,6
chr2	26724442	.	A	G	550.98	PASS	AC=1;AF=0.533;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant4-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant27-variant29-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:715,0,748:19,10,19,6
chr2	26724725	.	T	G	2376.89	PASS	AC=1;AF=0.656;AN=2;DP=3019;set=variant-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,52:107:99:1464,0,1581:22,33,21,31
chr2	26733500	.	C	T	2777.68	PASS	AC=1;AF=0.563;AN=2;DP=1805;MQ=60;set=variant-variant3-variant10-variant11-variant14-variant15-variant16-variant17-variant20-variant23-variant26-variant28-variant34-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,66:117:99:1705,0,1367:37,14,47,19
chr2	26733677	.	G	A	2530.82	PASS	AC=1;AF=0.5;AN=2;DP=1258;MQ=60;set=variant3-variant10-variant14-variant15-variant23-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,96:192:99:2436,0,2344:36,60,30,66
chr2	26739247	.	T	A	3265.28	PASS	AC=1;AF=0.769;AN=2;DP=3658;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,63:119:99:1459,0,1394:35,21,37,26
chr2	26739526	.	A	G	697.84	PASS	AC=1;AF=0.5;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant22-variant23-variant24-variant40	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:726,0,558:7,15,9,17
chr2	26741961	.	G	A	1049.87	PASS	AC=1;AF=0.621;AN=2;DP=4397;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,79:132:99:2115,0,1377:18,35,29,50
chr2	26750557	.	T	C	978.83	PASS	AC=2;AF=0.977;AN=2;DP=1899;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2045,171,0:0,0,44,13
chr2	26750645	.	G	A	2927.54	PASS	AC=2;AF=0.802;AN=2;DP=4503;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3784,370,0:0,0,66,58
chr2	26781247	.	G	C	1535.81	PASS	AC=1;AF=0.75;AN=2;DP=4612;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,74:171:99:1718,0,2398:59,38,47,27
chr2	26781685	.	CGTGT	CGT,C	426.12	PASS	AC=2,0;AF=0.895,0.058;AN=2;DP=1487;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:35:99:0,0,10,25
chr2	26794844	.	AT	A	145.74	PASS	AC=2;AF=0.583;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant13-variant15-variant22-variant26-variant28-variant33-variant34-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:143,12,0:0,0,4,0
chr2	26795049	.	A	C	93.28	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=333;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:47,15:62:99:314,0,3297:9,38,15,0
chr2	26795056	.	A	C	96.29	PASS	AC=1;AF=0.5;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant12-filterInvariant15-filterInvariant28	GT:AD:DP:GQ:PL:SB	0/1:44,10:54:99:293,0,3168:5,39,10,0
chr2	26795217	.	GT	G	40.72	PASS	AC=2;AF=0.781;AN=2;DP=291;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:198,24,0:0,0,2,6
chr2	26798893	.	A	T	3719.1	PASS	AC=1;AF=0.531;AN=2;DP=4996;MQ=60;set=variant4-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant26-variant28-variant33-variant34-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:174,194:368:99:4691,0,4048:76,98,92,102
chr2	26799031	.	G	A	1507.62	PASS	AC=1;AF=0.531;AN=2;DP=1308;MQ=60;set=variant4-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant26-variant28-variant33-variant34-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,55:90:99:1632,0,869:13,22,11,44
chr2	26800422	.	G	A	1170.02	PASS	AC=1;AF=0.735;AN=2;DP=6058;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,95:195:99:2235,0,2403:50,50,41,54
chr2	26801586	.	G	A	693.09	PASS	AC=1;AF=0.719;AN=2;DP=2054;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:873,0,1240:23,21,22,13
chr2	26802392	.	A	T	1286.14	PASS	AC=1;AF=0.536;AN=2;DP=1815;MQ=60;set=variant4-variant14-variant15-variant16-variant17-variant22-variant23-variant26-variant28-variant33-variant34-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,72:135:99:1808,0,1552:22,41,29,43
chr2	26804008	.	A	G	383.42	PASS	AC=1;AF=0.727;AN=2;DP=540;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:148,0,152:4,0,4,1
chr2	26804122	.	T	G	582.79	PASS	AC=1;AF=0.65;AN=2;DP=2165;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:835,0,851:24,13,23,12
chr2	26804143	.	T	C	717.81	PASS	AC=1;AF=0.656;AN=2;DP=2674;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:975,0,1153:29,15,24,20
chr2	26804218	.	G	A	1710.56	PASS	AC=2;AF=0.977;AN=2;DP=4860;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:2964,321,0:0,0,51,57
chr2	26804247	.	T	C	502.05	PASS	AC=1;AF=0.607;AN=2;DP=2755;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:940,0,1328:24,31,15,26
chr2	26818006	.	T	C	1624.67	PASS	AC=2;AF=0.81;AN=2;DP=7125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:5905,581,0:0,0,104,90
chr2	26818021	.	C	T	1497.22	PASS	AC=2;AF=0.816;AN=2;DP=6480;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,186:187:99:5551,545,0:0,1,99,87
chr2	26846282	.	T	C	1116.67	PASS	AC=1;AF=0.706;AN=2;DP=2549;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,53:85:99:1251,0,809:23,9,32,21
chr2	26852210	.	A	C	32.39	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=26;FS=12.378;FractionInformativeReads=1;MQ=60;MQRankSum=0.694;QD=1.25;ReadPosRankSum=-1.734;SOR=3.987;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:19,7:26:61:61,0,508:10,9,7,0
chr2	26915624	.	G	T	435.19	PASS	AC=1;AF=0.75;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:69:118,0,69:2,2,3,3
chr2	26951449	.	G	A	1913.24	PASS	AC=2;AF=0.989;AN=2;DP=4135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,122:123:99:3604,357,0:1,0,63,59
chr2	26952998	.	T	C	857	PASS	AC=1;AF=0.568;AN=2;DP=1176;MQ=60;set=variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant30-variant31-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:780,0,920:15,20,18,16
chr2	26953354	.	G	T	2696.29	PASS	AC=2;AF=0.686;AN=2;DP=4104;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3561,350,0:0,0,55,62
chr2	26953540	.	A	G	3818.36	PASS	AC=2;AF=0.686;AN=2;DP=4926;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4351,411,0:0,0,75,62
chr2	26953582	.	T	G	4805.9	PASS	AC=2;AF=0.686;AN=2;DP=4703;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:6311,433,0:0,0,71,73
chr2	26953591	.	G	A	4582.02	PASS	AC=2;AF=0.989;AN=2;DP=5924;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:6407,442,0:0,0,73,72
chr2	26953671	.	G	A	2863.68	PASS	AC=2;AF=0.989;AN=2;DP=4945;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:4055,366,0:0,0,64,58
chr2	26953747	.	A	G	2923.86	PASS	AC=2;AF=0.989;AN=2;DP=4735;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3819,342,0:0,0,58,56
chr2	26953850	.	C	T	2968.94	PASS	AC=2;AF=0.686;AN=2;DP=3393;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3425,305,0:0,0,47,55
chr2	26953952	.	C	T	1755.5	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=3.866;FractionInformativeReads=1;MQ=60;MQRankSum=0.11;QD=11.94;ReadPosRankSum=3.315;SOR=1.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:72,75:147:99:1784,0,1741:36,36,43,32
chr2	26954344	.	G	A	178.65	PASS	AC=2;AF=0.985;AN=2;DP=178;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,2,3
chr2	26954991	.	G	A	1157.84	PASS	AC=1;AF=0.568;AN=2;DP=1692;MQ=60;set=variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant30-variant31-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,47:93:99:1024,0,1057:26,20,24,23
chr2	26956187	.	G	A	1075.07	PASS	AC=2;AF=0.989;AN=2;DP=1730;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1528,149,0:0,0,23,27
chr2	27001810	.	C	CT	227.08	PASS	AC=1;AF=0.553;AN=2;DP=658;set=variant3-variant8-variant11-variant12-variant14-filterInvariant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:86:86,0,349:4,14,0,6
chr2	27003021	.	T	C	246.86	PASS	AC=1;AF=0.604;AN=2;DP=523;MQ=60;set=variant3-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:300,0,394:7,7,6,6
chr2	27014980	.	T	C	1616.44	PASS	AC=1;AF=0.604;AN=2;DP=2979;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,96:166:99:2321,0,1626:36,34,47,49
chr2	27015118	.	G	A	994.06	PASS	AC=1;AF=0.604;AN=2;DP=1430;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:890,0,1028:16,25,8,25
chr2	27015141	.	G	GC	626.89	PASS	AC=1;AF=0.604;AN=2;DP=972;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,15:47:99:393,0,967:12,20,4,11
chr2	27015610	.	CCA	C	3832.67	PASS	AC=1;AF=0.556;AN=2;DP=1519;MQ=60;set=variant3-variant8-variant12-variant14-variant15-variant23-variant25-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:112,73:185:99:2677,0,4526:54,58,36,37
chr2	27015903	.	T	C	843.77	PASS	AC=1;AF=0.604;AN=2;DP=1345;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:892,0,705:19,10,22,12
chr2	27015969	.	G	A	1186.69	PASS	AC=1;AF=0.604;AN=2;DP=2738;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,71:137:99:1735,0,1423:37,29,45,26
chr2	27016259	.	A	G	588.75	PASS	AC=1;AF=0.604;AN=2;DP=974;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:715,0,552:10,13,12,16
chr2	27016302	.	G	GT	617.98	PASS	AC=1;AF=0.604;AN=2;DP=696;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:692,0,519:7,11,8,15
chr2	27016351	.	G	A	183.09	PASS	AC=1;AF=0.604;AN=2;DP=377;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:339,0,258:3,7,4,9
chr2	27016988	.	C	T	4578.22	PASS	AC=2;AF=0.943;AN=2;DP=13801;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,349:349:99:11019,1044,0:0,0,151,198
chr2	27017542	.	A	AT	43.31	PASS	AC=2;AF=0.864;AN=2;DP=157;set=variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:86,9,0:0,0,0,3
chr2	27150891	.	G	A	1413.81	PASS	AC=1;AF=0.65;AN=2;DP=1366;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,21:58:99:425,0,1052:22,15,12,9
chr2	27157396	.	G	A	328.53	PASS	AC=1;AF=0.704;AN=2;DP=250;FractionInformativeReads=1;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:360,0,165:5,0,9,0
chr2	27157400	.	A	G	343.27	PASS	AC=2;AF=1;AN=2;DP=475;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:642,45,0:0,0,15,0
chr2	27157788	.	T	C	1148.16	PASS	AC=1;AF=0.65;AN=2;DP=966;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:782,0,604:3,14,4,20
chr2	27163044	.	T	C	4288.97	PASS	AC=1;AF=0.7;AN=2;DP=5770;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,85:192:99:2246,0,2775:45,62,39,46
chr2	27163284	.	G	A	275.29	PASS	AC=2;AF=0.988;AN=2;DP=347;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.421;ReadPosRankSum=-2.017;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:435,30,0:0,0,1,9
chr2	27164806	.	G	A	4368.14	PASS	AC=1;AF=0.7;AN=2;DP=5400;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,92:157:99:2357,0,1554:32,33,46,46
chr2	27165202	.	T	C	508.54	PASS	AC=1;AF=0.661;AN=2;DP=348;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:61:312,0,61:0,2,2,6
chr2	27167784	.	C	T	955.85	PASS	AC=1;AF=0.65;AN=2;DP=976;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:471,0,326:6,7,7,12
chr2	27169540	.	T	G	500.33	PASS	AC=1;AF=0.643;AN=2;DP=295;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:193,0,194:5,0,5,1
chr2	27169637	.	TC	T	1334.73	PASS	AC=1;AF=0.714;AN=2;DP=1828;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:894,0,1376:26,13,21,6
chr2	27169842	.	C	A	4434.41	PASS	AC=1;AF=0.714;AN=2;DP=8363;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,127:242:99:3005,0,2859:63,52,63,64
chr2	27170470	.	C	CG	2879.49	PASS	AC=1;AF=0.714;AN=2;DP=3080;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,49:91:99:1241,0,1019:14,28,23,26
chr2	27170941	.	CCACACA	CCA,CCACA,CCACACACA,C,CCACACACACACACACACACACACACACACACACACACACGCACACA	567.18	PASS	AC=1,0,0,0,0;AF=0.143,0.369,0.238,0.036,0.012;AN=2;DP=1248;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:27:99:6,5,8,8
chr2	27170982	.	C	T	1062.45	PASS	AC=1;AF=0.714;AN=2;DP=1366;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:639,0,974:16,10,14,11
chr2	27171245	.	C	T	1999.55	PASS	AC=1;AF=0.643;AN=2;DP=1870;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,40:80:99:949,0,937:20,20,20,20
chr2	27172069	.	T	C	1977.68	PASS	AC=1;AF=0.643;AN=2;DP=1630;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:894,0,1014:18,15,19,14
chr2	27173139	.	G	A	647.51	PASS	AC=1;AF=0.5;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant9-variant15	GT:AD:DP:GQ:PL:SB	0/1:36,42:78:99:1146,0,799:18,18,17,25
chr2	27173249	.	G	A	869.65	PASS	AC=1;AF=0.714;AN=2;DP=1266;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:364,0,469:4,11,4,10
chr2	27237614	.	A	G	635.51	PASS	AC=1;AF=0.721;AN=2;DP=887;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:495,0,234:7,4,10,6
chr2	27246285	.	C	T	4255.29	PASS	AC=2;AF=0.932;AN=2;DP=9184;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:7147,716,0:0,0,109,130
chr2	27249245	.	A	G	3903.66	PASS	AC=1;AF=0.721;AN=2;DP=5501;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,114:199:99:2779,0,1900:41,44,56,58
chr2	27259794	.	G	A	2591.51	PASS	AC=1;AF=0.706;AN=2;DP=2850;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,47:87:99:1328,0,1038:25,15,26,21
chr2	27260469	.	G	A	4513.47	PASS	AC=1;AF=0.667;AN=2;DP=4369;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:133,105:238:99:2425,0,3156:65,68,43,62
chr2	27261329	.	A	G	1195.68	PASS	AC=2;AF=1;AN=2;DP=1960;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1659,153,0:0,0,32,19
chr2	27262763	.	GGGA	G	1463.65	PASS	AC=2;AF=1;AN=2;DP=2996;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3048,208,0:0,0,20,49
chr2	27263122	.	T	C	3270.56	PASS	AC=1;AF=0.714;AN=2;DP=6623;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,92:197:99:2320,0,2738:47,58,42,50
chr2	27276202	.	G	A	2104.54	PASS	AC=1;AF=0.714;AN=2;DP=2297;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1162,0,1052:24,19,27,16
chr2	27279416	.	A	G	3956.63	PASS	AC=2;AF=1;AN=2;DP=3643;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2595,266,0:0,0,54,35
chr2	27280092	.	T	A	1853.95	PASS	AC=1;AF=0.778;AN=2;DP=1729;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,44:68:99:1229,0,702:18,6,30,14
chr2	27280127	.	G	A	2286.3	PASS	AC=1;AF=0.778;AN=2;DP=2634;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,60:97:99:1516,0,940:23,14,38,22
chr2	27280460	.	A	G	654.9	PASS	AC=1;AF=0.714;AN=2;DP=852;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:404,0,120:1,4,3,10
chr2	27290525	.	A	G	2475.31	PASS	AC=1;AF=0.778;AN=2;DP=4680;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,54:122:99:1288,0,1638:34,34,28,26
chr2	27290565	.	C	CAGGCCAGGTTCTTTAAGCCTAGTTGGG	1606.22	PASS	AC=1;AF=0.5;AN=2;DP=223;MQ=60;set=variant2-variant15	GT:AD:DP:GQ:PL:SB	0/1:39,45:84:99:2331,0,1410:22,17,20,25
chr2	27291661	.	G	A	2551.44	PASS	AC=1;AF=0.656;AN=2;DP=2290;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,42:79:99:1271,0,992:10,27,9,33
chr2	27292651	.	T	C	3108.29	PASS	AC=1;AF=0.714;AN=2;DP=3835;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:1819,0,1812:31,39,29,44
chr2	27293041	.	C	T	1467.53	PASS	AC=1;AF=0.5;AN=2;DP=651;MQ=60;set=variant9-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:119,109:228:99:2365,0,3097:67,52,60,49
chr2	27293150	.	G	T	5936.56	PASS	AC=1;AF=0.714;AN=2;DP=6042;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,95:188:99:2366,0,2500:36,57,40,55
chr2	27302165	.	T	C	1969.14	PASS	AC=1;AF=0.714;AN=2;DP=2260;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:1144,0,1161:13,30,11,30
chr2	27303755	.	A	G	2329.22	PASS	AC=2;AF=1;AN=2;DP=4917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3320,326,0:0,0,44,65
chr2	27307769	.	G	C	4260.56	PASS	AC=1;AF=0.722;AN=2;DP=5724;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,88:202:99:2181,0,2693:53,61,46,42
chr2	27309659	.	A	C	1816.24	PASS	AC=1;AF=0.714;AN=2;DP=2157;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:607,0,1003:22,15,14,8
chr2	27315252	.	G	A	4490.7	PASS	AC=1;AF=0.655;AN=2;DP=5629;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:136,116:252:99:2666,0,3345:76,60,58,58
chr2	27319769	.	A	C	1502.89	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.338;QD=13.18;ReadPosRankSum=3.907;SOR=0.749;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:55,59:114:99:1531,0,1450:30,25,33,26
chr2	27319826	.	A	G	3067.75	PASS	AC=2;AF=1;AN=2;DP=4598;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,113:114:99:3596,332,0:0,1,54,59
chr2	27321887	.	A	G	882.5	PASS	AC=2;AF=1;AN=2;DP=1505;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1432,138,0:0,0,32,14
chr2	27323385	.	C	T	4273.06	PASS	AC=1;AF=0.661;AN=2;DP=4277;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,86:186:99:2309,0,2811:66,34,57,29
chr2	27323468	.	A	C	9916.31	PASS	AC=2;AF=1;AN=2;DP=11993;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,365:365:99:10790,1091,0:0,0,195,170
chr2	27323936	.	G	GC	2284.68	PASS	AC=1;AF=0.735;AN=2;DP=2689;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,44:97:99:1233,0,1553:28,25,23,21
chr2	27324724	.	G	C	2515.95	PASS	AC=1;AF=0.735;AN=2;DP=4327;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,79:160:99:2211,0,2098:43,38,43,36
chr2	27324751	.	G	T	2359.49	PASS	AC=1;AF=0.735;AN=2;DP=4827;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,81:174:99:2032,0,2307:49,44,41,40
chr2	27327369	.	T	C	1448.74	PASS	AC=1;AF=0.5;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:52,67:119:99:1668,0,1335:21,31,31,36
chr2	27327708	.	T	G	545.29	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:601,0,313:6,7,10,14
chr2	27342067	.	G	C	109.98	PASS	AC=1;AF=0.725;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:22:210,0,22:0,1,2,5
chr2	27351948	.	T	G	1427.29	PASS	AC=2;AF=1;AN=2;DP=4528;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2828,264,0:0,0,42,46
chr2	27353507	.	G	C	1282.53	PASS	AC=1;AF=0.536;AN=2;DP=1894;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,78:145:99:1968,0,1639:29,38,31,47
chr2	27353979	.	T	TA	514.2	PASS	AC=1;AF=0.536;AN=2;DP=603;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,45:66:99:1404,0,549:11,10,24,21
chr2	27354173	.	C	A	1732.38	PASS	AC=2;AF=1;AN=2;DP=3481;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3044,284,0:0,0,47,48
chr2	27354971	.	C	T	1613.21	PASS	AC=1;AF=0.536;AN=2;DP=2207;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,70:151:99:1539,0,2189:42,39,39,31
chr2	27355281	.	G	A	462.97	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=9.853;FractionInformativeReads=1;MQ=60;MQRankSum=0.467;QD=17.81;ReadPosRankSum=2.18;SOR=2.425;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:491,0,294:6,5,3,12
chr2	27355454	.	A	C	928.26	PASS	AC=2;AF=1;AN=2;DP=1581;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1466,126,0:0,0,30,12
chr2	27355991	.	G	T	2300.73	PASS	AC=1;AF=0.536;AN=2;DP=3006;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,127:248:99:3186,0,2999:58,63,66,61
chr2	27356278	.	T	C	1396.26	PASS	AC=1;AF=0.536;AN=2;DP=1826;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,80:139:99:2173,0,1340:36,23,43,37
chr2	27357619	.	C	T	696.83	PASS	AC=1;AF=0.536;AN=2;DP=619;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:685,0,531:2,14,2,20
chr2	27361246	.	C	T	1225.66	PASS	AC=1;AF=0.536;AN=2;DP=1240;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,56:105:99:1355,0,1051:24,25,30,26
chr2	27361947	.	G	A	228.68	PASS	AC=1;AF=0.536;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant36-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:208,0,390:4,9,3,6
chr2	27362371	.	A	G	220.6	PASS	AC=1;AF=0.577;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant15-variant16-variant17-variant19-variant20-variant27-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:187,0,225:4,5,4,4
chr2	27376376	.	C	CTCTTT,CTCTTTTCTTTTCTTT,CTCTTTTCTTTTCTTTTCTTT,CTCTTTTCTTT	93.7	PASS	AC=0,0,2,0;AF=0.472,0.153,0.181,0.125;AN=2;DP=334;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:2:8:0,0,0,2
chr2	27422605	.	C	T	1532.85	PASS	AC=2;AF=0.942;AN=2;DP=2384;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1776,168,0:0,0,32,24
chr2	27424496	.	G	A	2458.86	PASS	AC=2;AF=0.942;AN=2;DP=4572;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4032,395,0:0,0,73,59
chr2	27426362	.	G	A	188.22	PASS	AC=2;AF=0.568;AN=2;DP=643;MQ=60;set=variant2-variant4-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1234,102,0:0,0,7,27
chr2	27426514	.	G	C	955.34	PASS	AC=2;AF=0.977;AN=2;DP=2867;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2230,227,0:0,0,43,33
chr2	27428147	.	A	G	2320.48	PASS	AC=2;AF=1;AN=2;DP=2602;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2420,222,0:0,0,54,20
chr2	27428295	.	A	G	5604.43	PASS	AC=2;AF=1;AN=2;DP=10335;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,294:294:99:8538,881,0:0,0,150,144
chr2	27428702	.	A	C	317.08	PASS	AC=2;AF=0.942;AN=2;DP=472;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:380,30,0:0,0,8,2
chr2	27428815	.	C	G	2728.66	PASS	AC=2;AF=0.942;AN=2;DP=2999;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2500,240,0:0,0,49,31
chr2	27428877	.	C	G	3300.39	PASS	AC=2;AF=0.942;AN=2;DP=4473;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3664,374,0:0,0,70,56
chr2	27431413	.	T	C	455.98	PASS	AC=2;AF=0.942;AN=2;DP=1361;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1080,116,0:0,0,23,16
chr2	27435250	.	A	G	5495.57	PASS	AC=2;AF=0.977;AN=2;DP=9111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7272,720,0:0,0,129,111
chr2	27438710	.	G	A	319.36	PASS	AC=2;AF=0.575;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:421,33,0:0,0,1,10
chr2	27440785	.	C	T	2007.45	PASS	AC=2;AF=1;AN=2;DP=5736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4472,429,0:0,0,83,61
chr2	27445315	.	G	GT	1774.75	PASS	AC=2;AF=0.568;AN=2;DP=3364;MQ=60;set=variant2-variant4-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5789,495,0:0,0,92,70
chr2	27448171	.	CT	CTTT,CTT,C,CTTTTT	33.67	PASS	AC=0,1,0,0;AF=0.1,0.35,0.1,0.1;AN=2;DP=177;set=variant8-variant11-filterInvariant12-variant15-variant26-variant28-variant33-filterInvariant34-variant39-variant41	GT:DP:GQ:SB	0/2:10:2:0,2,2,6
chr2	27449293	.	C	G	1060.24	PASS	AC=2;AF=0.64;AN=2;DP=2073;MQ=60;set=variant2-variant4-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3515,318,0:0,0,52,54
chr2	27460968	.	A	G	1638.29	PASS	AC=2;AF=0.64;AN=2;DP=4069;MQ=60;set=variant2-variant4-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:5859,589,0:0,0,98,99
chr2	27462076	.	C	T	1924.33	PASS	AC=2;AF=0.568;AN=2;DP=4129;MQ=60;set=variant2-variant4-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,200:202:99:5900,552,0:1,1,74,126
chr2	27462405	.	T	A	747.31	PASS	AC=2;AF=0.64;AN=2;DP=2323;MQ=60;set=variant2-variant4-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3504,339,0:0,0,59,55
chr2	27463492	.	C	T	1663.2	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=2.96;FractionInformativeReads=1;MQ=60;MQRankSum=-1.119;QD=16.31;ReadPosRankSum=0.864;SOR=1.034;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1691,0,1480:14,35,12,41
chr2	27466258	.	CTTT	C,CT,CTT,CTTTT	342.9	PASS	AC=0,1,1,0;AF=0.014,0.171,0.343,0.014;AN=2;DP=3370;set=variant-variant2-variant3-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	2/3:90:99:5,7,26,52
chr2	27477627	.	AACACACACACAC	AACACACAC,AACACACACACACAC,AACACACACAC,AACACACACACACACACAC,AAC,AACACAC,AACACACACACACACAC,A	1079.07	PASS	AC=1,0,1,0,0,0,0,0;AF=0.197,0.132,0.145,0.013,0.026,0.079,0.026,0.013;AN=2;DP=1353;set=variant2-filterInvariant3-variant4-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	1/3:32:99:0,0,26,6
chr2	27481460	.	C	T	468.77	PASS	AC=2;AF=0.568;AN=2;DP=617;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:894,78,0:0,0,16,10
chr2	27486019	.	A	C	154.83	PASS	AC=1;AF=0.5;AN=2;DP=928;MQ=60;set=variant2-variant4-variant5-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant20-filterInvariant22-variant24-variant25-filterInvariant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant36-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,10:39:99:104,0,981:3,26,10,0
chr2	27497815	.	T	G	1075.55	PASS	AC=2;AF=0.583;AN=2;DP=1715;MQ=60;set=variant2-variant4-variant8-variant11-variant14-variant15-variant16-variant17-variant19-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4072,377,0:0,0,85,41
chr2	27499037	.	A	G	82.24	PASS	AC=2;AF=0.727;AN=2;DP=55;FractionInformativeReads=1;set=variant2-variant10-variant11-variant14-variant15-variant16-variant17-variant30-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:64,6,0:0,0,2,0
chr2	27499791	.	CTT	CTTTTT,CT,C,CTTT	121.95	PASS	AC=0,0,0,1;AF=0.026,0.342,0.105,0.053;AN=2;DP=671;set=variant4-variant6-variant7-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant13-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant26-filterInvariant27-filterInvariant32-filterInvariant36-variant39-variant40	GT:DP:GQ:SB	0/4:30:99:1,14,5,10
chr2	27500381	.	T	C	65.95	PASS	AC=2;AF=0.614;AN=2;DP=347;FractionInformativeReads=1;set=variant2-variant4-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant26-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:566,45,0:0,0,13,2
chr2	27504312	.	A	G	318.03	PASS	AC=2;AF=0.579;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant27-variant28-variant30-variant33-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1037,102,0:0,0,14,20
chr2	27505782	.	C	T	712.02	PASS	AC=2;AF=0.583;AN=2;DP=1545;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant11-variant14-variant15-variant16-variant17-variant19-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3399,326,0:0,0,41,68
chr2	27522543	.	CCTATCTATCTAT	CCTATCTATCTATCTAT,CCTATCTATCTATCTATCTAT,CCTATCTAT,C	594.56	PASS	AC=1,0,0,0;AF=0.474,0.167,0.038,0.013;AN=2;DP=1958;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:36:99:13,11,5,7
chr2	27528692	.	T	C	383.07	PASS	AC=2;AF=0.614;AN=2;DP=888;MQ=60;set=variant2-variant4-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant26-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2011,199,0:0,0,26,41
chr2	27532870	.	A	G	939.29	PASS	AC=2;AF=0.583;AN=2;DP=1966;MQ=60;set=variant2-variant4-variant8-variant11-variant14-variant15-variant16-variant17-variant19-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:3863,404,0:0,0,59,76
chr2	27535311	.	T	TG	2624.78	PASS	AC=2;AF=1;AN=2;DP=6101;FS=0;MQ=60;MQRankSum=1.015;ReadPosRankSum=-0.237;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:5208,442,0:0,0,67,80
chr2	27545943	.	G	T	747.45	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=2.969;FractionInformativeReads=1;MQ=60;MQRankSum=-0.425;QD=9.12;ReadPosRankSum=-1.817;SOR=0.609;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:46,36:82:99:776,0,1071:20,26,19,17
chr2	27548038	.	A	C	52.74	PASS	AC=2;AF=0.58;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:344,24,0:0,0,1,7
chr2	27549833	.	CA	C	539.15	PASS	AC=2;AF=0.58;AN=2;DP=2537;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,136:140:99:3505,310,0:1,3,67,69
chr2	27550967	.	A	G	707.59	PASS	AC=2;AF=0.574;AN=2;DP=2970;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3612,350,0:0,0,58,59
chr2	27556721	.	G	A	1540.23	PASS	AC=2;AF=0.603;AN=2;DP=3262;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4196,396,0:0,0,55,77
chr2	27558252	.	A	G	981.98	PASS	AC=2;AF=0.611;AN=2;DP=1942;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2493,257,0:0,0,49,37
chr2	27566520	.	T	A	945.35	PASS	AC=1;AF=0.5;AN=2;DP=1554;MQ=60;set=variant4-variant5-variant7-variant8-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1006,0,1279:17,31,19,25
chr2	27579231	.	T	C	1696.68	PASS	AC=2;AF=0.574;AN=2;DP=3839;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5452,518,0:0,0,90,83
chr2	27587922	.	CTTTT	C,CTTT	76.91	PASS	AC=0,2;AF=0.022,0.522;AN=2;DP=400;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant32-variant33-variant35-variant38-variant39-filterInvariant41-variant43	GT:DP:GQ:SB	2/2:12:10:1,0,4,7
chr2	27589810	.	T	C	1626.39	PASS	AC=2;AF=0.571;AN=2;DP=3897;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:5098,488,0:0,0,91,72
chr2	27591804	.	T	C	1102.64	PASS	AC=1;AF=0.52;AN=2;DP=1945;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,52:124:99:1330,0,1897:44,28,36,16
chr2	27592423	.	C	T	1494.82	PASS	AC=2;AF=0.577;AN=2;DP=3028;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3741,367,0:0,0,55,68
chr2	27595756	.	G	C	722.68	PASS	AC=2;AF=0.593;AN=2;DP=1338;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2481,215,0:0,0,29,43
chr2	27596846	.	G	A	1225.07	PASS	AC=1;AF=0.5;AN=2;DP=129;FS=6.805;FractionInformativeReads=1;MQ=60;MQRankSum=-1.314;QD=9.5;ReadPosRankSum=-0.931;SOR=1.287;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:76,53:129:99:1253,0,1970:38,38,33,20
chr2	27597805	.	CTT	C	355.44	PASS	AC=2;AF=0.596;AN=2;DP=1232;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2554,172,0:0,0,33,24
chr2	27598097	.	T	C	733.61	PASS	AC=2;AF=0.632;AN=2;DP=1931;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2387,210,0:0,0,19,51
chr2	27599132	.	G	A	3588.33	PASS	AC=2;AF=0.593;AN=2;DP=8767;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,382:383:99:11298,1131,0:1,0,172,210
chr2	27599875	.	T	G	623.85	PASS	AC=2;AF=0.593;AN=2;DP=1742;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3090,273,0:0,0,42,49
chr2	27600239	.	G	A	2020.23	PASS	AC=2;AF=0.596;AN=2;DP=5716;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,280:280:99:8344,836,0:0,0,161,119
chr2	27603673	.	G	A	100.64	PASS	AC=1;AF=0.5;AN=2;DP=184;MQ=60;set=variant2-variant10-variant11-variant15-variant27-variant28-variant40	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:417,0,392:9,8,7,10
chr2	27604279	.	A	G	1403.83	PASS	AC=2;AF=0.593;AN=2;DP=3426;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4194,417,0:0,0,72,67
chr2	27605696	.	G	GT	37.09	PASS	AC=2;AF=0.75;AN=2;DP=87;MQ=60;set=variant5-variant10-variant15-variant27-variant33-variant35-variant36-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:182,21,0:0,0,3,4
chr2	27606098	.	A	G	896.83	PASS	AC=2;AF=0.977;AN=2;DP=1618;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2013,171,0:0,0,44,13
chr2	27608115	.	C	T	598.48	PASS	AC=2;AF=0.596;AN=2;DP=858;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1368,141,0:0,0,17,30
chr2	27651054	.	A	T	3351.98	PASS	AC=2;AF=0.596;AN=2;DP=7033;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,326:326:99:9829,977,0:0,0,146,180
chr2	27651375	.	C	T	1369.7	PASS	AC=2;AF=0.633;AN=2;DP=4142;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,181:182:99:5047,534,0:1,0,81,100
chr2	27651693	.	T	C	122.15	PASS	AC=2;AF=0.6;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:611,51,0:0,0,2,15
chr2	27656036	.	A	G	981.9	PASS	AC=2;AF=0.596;AN=2;DP=1722;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2162,200,0:0,0,42,25
chr2	27656822	.	G	GA	1547.13	PASS	AC=2;AF=0.638;AN=2;DP=3479;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:6539,530,0:0,0,83,93
chr2	27657681	.	C	T	529.06	PASS	AC=1;AF=0.5;AN=2;DP=395;MQ=60;set=variant2-variant11-variant15-variant27-variant28-variant33-variant40	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:961,0,1093:15,24,11,26
chr2	27659491	.	T	C	952.58	PASS	AC=2;AF=0.596;AN=2;DP=1818;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2898,279,0:0,0,59,34
chr2	27663215	.	T	A	1203.53	PASS	AC=2;AF=0.596;AN=2;DP=2505;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3112,287,0:0,0,65,31
chr2	27663416	.	G	T	1511.31	PASS	AC=2;AF=0.596;AN=2;DP=3135;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4618,434,0:0,0,66,79
chr2	27665361	.	C	G	1860.79	PASS	AC=2;AF=0.596;AN=2;DP=4603;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,206:208:99:6336,574,0:1,1,102,104
chr2	27667297	.	A	G	279.63	PASS	AC=2;AF=0.596;AN=2;DP=965;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1100,93,0:0,0,21,10
chr2	27667520	.	T	TTTTG	238.53	PASS	AC=2;AF=0.638;AN=2;DP=415;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:41:616,41,0:0,0,3,11
chr2	27669341	.	AT	A	7374.33	PASS	AC=2;AF=0.596;AN=2;DP=11511;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,529:529:99:19676,1591,0:0,0,205,324
chr2	27669365	.	G	GT	3669.48	PASS	AC=2;AF=0.596;AN=2;DP=8534;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,311:313:99:8485,879,0:0,2,113,198
chr2	27670307	.	G	A	1475.08	PASS	AC=2;AF=0.596;AN=2;DP=3061;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4110,422,0:0,0,83,58
chr2	27676287	.	A	T	998.48	PASS	AC=2;AF=0.596;AN=2;DP=2153;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3188,284,0:0,0,44,51
chr2	27677691	.	G	A	443.14	PASS	AC=2;AF=0.596;AN=2;DP=899;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:920,90,0:0,0,12,18
chr2	27681598	.	A	C	284.53	PASS	AC=2;AF=0.596;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1192,102,0:0,0,25,9
chr2	27684734	.	A	G	577.51	PASS	AC=2;AF=0.596;AN=2;DP=1914;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2739,248,0:0,0,24,59
chr2	27685388	.	G	A	205.56	PASS	AC=2;AF=0.633;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:695,63,0:0,0,15,6
chr2	27688601	.	C	T	857.46	PASS	AC=2;AF=0.596;AN=2;DP=2960;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4048,388,0:0,0,65,65
chr2	27694905	.	CA	C	195.42	PASS	AC=2;AF=0.583;AN=2;DP=430;MQ=60;set=variant5-variant7-filterInvariant8-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,15:17:1:320,1,0:1,1,10,5
chr2	27706640	.	T	C	776.78	PASS	AC=2;AF=0.607;AN=2;DP=1774;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2294,210,0:0,0,42,28
chr2	27715207	.	T	A	1249.11	PASS	AC=2;AF=0.596;AN=2;DP=2894;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4617,428,0:0,0,71,72
chr2	27715416	.	C	T	1166.73	PASS	AC=2;AF=0.596;AN=2;DP=2783;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3029,295,0:0,0,40,59
chr2	27716494	.	G	A	332.65	PASS	AC=2;AF=0.604;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:632,48,0:0,0,3,13
chr2	27721971	.	T	C	1371.64	PASS	AC=2;AF=0.596;AN=2;DP=3280;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4566,452,0:0,0,69,82
chr2	27722416	.	G	A	739.49	PASS	AC=2;AF=0.596;AN=2;DP=1778;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,72:73:99:2199,172,0:0,1,25,47
chr2	27728777	.	C	G	1409.71	PASS	AC=2;AF=0.596;AN=2;DP=3949;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:5791,588,0:0,0,81,115
chr2	27729480	.	G	A	2274.97	PASS	AC=2;AF=0.596;AN=2;DP=5589;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,271:271:99:8357,811,0:0,0,144,127
chr2	27730940	.	T	C	936.02	PASS	AC=2;AF=0.647;AN=2;DP=3037;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3297,294,0:0,0,62,36
chr2	27732642	.	CAA	CA,CAAAA,C,CAAA	245.95	PASS	AC=0,2,0,0;AF=0.176,0.324,0.029,0.118;AN=2;DP=306;MQ=60;set=variant-variant3-variant7-variant10-variant12-variant13-variant15-filterInvariant22-variant23-variant25-variant27-variant28-variant31-variant32-variant35-variant39-variant41	GT:DP:GQ:SB	2/2:4:18:0,0,2,2
chr2	27741633	.	C	G	924.34	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.49;QD=8.56;ReadPosRankSum=-2.108;SOR=0.704;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:66,42:108:99:953,0,1654:39,27,25,17
chr2	27745764	.	GT	G	58.23	PASS	AC=2;AF=0.929;AN=2;DP=47;FS=0;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=variant7-variant10-variant15-variant17-variant19-variant27-variant33	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:148,18,0:0,0,0,6
chr2	27806793	.	G	GT	555.1	PASS	AC=1;AF=0.538;AN=2;DP=197;MQ=60;set=variant2-variant4-variant9-variant14-variant15-variant20-variant24-variant27-variant28-variant29-variant33-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:145,0,178:0,6,1,4
chr2	27857950	.	G	A	1390.66	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=10.988;FractionInformativeReads=1;MQ=60;MQRankSum=-0.294;QD=12.76;ReadPosRankSum=-0.585;SOR=1.654;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:56,53:109:99:1419,0,1702:28,28,36,17
chr2	27858167	.	CT	CTTTTTTT,CTT,CTTTTTTTT,C,CTTTTTTTTT,CTTTTTT,CTTTTTTTTTT	1336.45	PASS	AC=0,0,0,1,0,0,0;AF=0.106,0.091,0.212,0.091,0.076,0.03,0.03;AN=2;DP=2295;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-filterInvariant10-variant12-filterInvariant13-filterInvariant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/4:81:99:24,38,5,14
chr2	27861707	.	G	A	617.11	PASS	AC=2;AF=0.683;AN=2;DP=892;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1196,111,0:0,0,25,12
chr2	27873415	.	G	A	1384.03	PASS	AC=2;AF=0.691;AN=2;DP=1986;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2663,230,0:0,0,50,27
chr2	27874332	.	A	C	5331.76	PASS	AC=2;AF=0.691;AN=2;DP=7019;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,276:276:99:8364,826,0:0,0,131,145
chr2	27874563	.	G	T	11552.6	PASS	AC=2;AF=0.691;AN=2;DP=13012;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,451:454:99:14127,1299,0:2,1,212,239
chr2	27875042	.	A	T	444.91	PASS	AC=2;AF=0.957;AN=2;DP=652;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1014,78,0:0,0,24,2
chr2	27884878	.	C	T	18129.5	PASS	AC=2;AF=1;AN=2;DP=20856;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,512:512:99:15565,1533,0:0,0,264,248
chr2	27887034	.	C	A	2405.98	PASS	AC=2;AF=0.691;AN=2;DP=3569;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3693,365,0:0,0,66,56
chr2	27905388	.	ATTCTT	AT,A,ATT	194.57	PASS	AC=2,0,0;AF=0.607,0.179,0.036;AN=2;DP=83;FS=0;set=variant2-variant6-variant8-variant11-variant15-variant16-variant17-variant20-variant27-variant28-variant33-variant35-variant36-variant44	GT:DP:GQ:SB	1/1:10:30:0,0,3,7
chr2	27929616	.	CT	C	211.99	PASS	AC=2;AF=0.932;AN=2;DP=1095;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:435,51,0:0,0,3,14
chr2	27995781	.	A	C	207.11	PASS	AC=2;AF=0.829;AN=2;DP=502;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:550,45,0:0,0,3,12
chr2	28268467	.	C	T	305.4	PASS	AC=2;AF=0.903;AN=2;DP=234;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:258,21,0:0,0,6,1
chr2	28464435	.	T	C	1335.86	PASS	AC=2;AF=1;AN=2;DP=903;FS=0;MQRankSum=0.528;ReadPosRankSum=1.583;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1017,81,0:0,0,4,23
chr2	28561757	.	C	T	613.42	PASS	AC=1;AF=0.583;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant16-variant17-variant22-variant25-variant27-variant31-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:404,0,1262:9,15,5,7
chr2	28561758	.	T	C	613.42	PASS	AC=1;AF=0.583;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant15-variant16-variant17-variant22-variant25-variant27-variant31-variant36-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:404,0,1262:9,15,5,7
chr2	28634790	.	G	A	1596.22	PASS	AC=1;AF=0.574;AN=2;DP=2957;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,84:155:99:2102,0,1837:32,39,40,44
chr2	28635740	.	T	C	2692.03	PASS	AC=1;AF=0.645;AN=2;DP=3038;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,67:117:99:1771,0,1302:24,26,30,37
chr2	28636644	.	A	G	1009.02	PASS	AC=1;AF=0.589;AN=2;DP=2863;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1305,0,1426:32,24,29,25
chr2	28636740	.	A	G	1312.88	PASS	AC=1;AF=0.603;AN=2;DP=3614;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,69:151:99:1575,0,2088:38,44,30,39
chr2	28638358	.	G	C	738.64	PASS	AC=2;AF=1;AN=2;DP=2063;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2473,237,0:0,0,38,41
chr2	28639331	.	CTTT	CT,CTT,C	812.04	PASS	AC=1,1,0;AF=0.568,0.386,0.023;AN=2;DP=2275;set=Intersection	GT:DP:GQ:SB	1/2:37:99:3,1,18,15
chr2	28639641	.	C	G	10120.2	PASS	AC=1;AF=0.689;AN=2;DP=10325;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:199,133:332:99:3158,0,5135:116,83,75,58
chr2	28639816	.	CT	C,CTT,CTTTT,CTTTTT	142.46	PASS	AC=1,0,0,0;AF=0.338,0.1,0.05,0.025;AN=2;DP=6932;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant12-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant31-filterInvariant32-variant33-variant34-filterInvariant35-variant36-variant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:141:99:37,58,11,35
chr2	28718781	.	C	T	1342.66	PASS	AC=1;AF=0.5;AN=2;DP=200;MQ=60;set=variant15-variant19	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1371,0,1590:36,24,31,27
chr2	28718897	.	A	G	3297.43	PASS	AC=2;AF=1;AN=2;DP=5882;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:4875,491,0:0,0,79,85
chr2	28748857	.	T	C	5104.34	PASS	AC=2;AF=0.989;AN=2;DP=8919;MQ=60;MQRankSum=0.824;ReadPosRankSum=0.724;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:6965,685,0:0,0,106,123
chr2	28748916	.	A	C	4121.95	PASS	AC=2;AF=0.788;AN=2;DP=6578;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,168:169:99:5180,466,0:1,0,67,101
chr2	28752498	.	T	C	1392.84	PASS	AC=2;AF=0.989;AN=2;DP=2215;FS=0;MQ=60;MQRankSum=0.867;ReadPosRankSum=-1.382;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1662,156,0:0,0,27,26
chr2	28752555	.	T	C	1977.84	PASS	AC=2;AF=0.943;AN=2;DP=3140;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2799,270,0:0,0,42,48
chr2	28752727	.	C	G	967.44	PASS	AC=2;AF=0.989;AN=2;DP=994;FS=0;FractionInformativeReads=1;MQRankSum=-1.848;ReadPosRankSum=2.266;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:999,72,0:0,0,6,18
chr2	28752741	.	A	G	876.22	PASS	AC=2;AF=0.943;AN=2;DP=787;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:60:880,60,0:0,0,2,16
chr2	28761257	.	A	G	1680.07	PASS	AC=2;AF=0.92;AN=2;DP=2963;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1961,189,0:0,0,25,38
chr2	28761282	.	A	G	1268.25	PASS	AC=2;AF=0.92;AN=2;DP=2241;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1529,135,0:0,0,14,31
chr2	28761481	.	C	T	167.95	PASS	AC=2;AF=0.97;AN=2;DP=143;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,2,2
chr2	28761484	.	G	A	167.95	PASS	AC=2;AF=0.97;AN=2;DP=143;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,2,2
chr2	28763374	.	G	T	1451.88	PASS	AC=2;AF=0.645;AN=2;DP=4631;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4427,449,0:0,0,71,80
chr2	28771452	.	CTA	C,CTATATA	1691.59	PASS	AC=2,0;AF=0.955,0.023;AN=2;DP=2420;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:88:99:0,0,45,43
chr2	28771624	.	T	G	4325.26	PASS	AC=2;AF=0.932;AN=2;DP=5223;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4726,465,0:0,0,87,68
chr2	28771897	.	T	C	572.23	PASS	AC=2;AF=0.756;AN=2;DP=688;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:767,57,0:0,0,4,15
chr2	28785754	.	G	C	599.08	PASS	AC=2;AF=0.977;AN=2;DP=599;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:645,51,0:0,0,16,1
chr2	28788428	.	AG	A	1634.85	PASS	AC=2;AF=0.767;AN=2;DP=2762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2682,217,0:0,0,29,43
chr2	28789643	.	T	C	1617.54	PASS	AC=2;AF=0.667;AN=2;DP=8501;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,311:311:99:8849,930,0:0,0,167,144
chr2	28795893	.	G	A	851.49	PASS	AC=2;AF=0.786;AN=2;DP=809;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:90:1234,90,0:0,0,24,4
chr2	28795899	.	C	T	888.08	PASS	AC=1;AF=0.756;AN=2;DP=856;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:524,0,527:14,1,14,4
chr2	28795962	.	G	A	1941.85	PASS	AC=2;AF=0.786;AN=2;DP=2950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3082,281,0:0,0,65,29
chr2	28800894	.	C	T	114.5	PASS	AC=1;AF=0.6;AN=2;DP=474;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant14-variant15-variant16-variant22-variant24-variant28-variant29-variant30-variant31-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:201,0,494:10,5,6,0
chr2	28816425	.	T	C	345.74	PASS	AC=2;AF=0.838;AN=2;DP=385;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:595,51,0:0,0,14,3
chr2	28816814	.	CT	CTTT,CTTTT,CTT,C	1205.67	PASS	AC=1,1,0,0;AF=0.341,0.402,0.012,0.037;AN=2;DP=2049;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant37-variant38-variant39-variant40-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	1/2:57:99:1,2,32,22
chr2	28816948	.	C	T	3075.89	PASS	AC=2;AF=0.842;AN=2;DP=3991;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3798,363,0:0,0,51,70
chr2	28817459	.	CTG	C	2122.79	PASS	AC=1;AF=0.757;AN=2;DP=2178;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:1589,0,1152:15,15,23,17
chr2	28817870	.	C	T	175.34	PASS	AC=1;AF=0.575;AN=2;DP=941;MQ=60;set=variant6-variant7-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:623,0,948:24,17,16,16
chr2	28818931	.	G	A	50.98	PASS	AC=1;AF=0.625;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant6-variant14-variant15-variant19-variant24-variant28-variant29-variant30-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:90:142,0,90:0,3,1,4
chr2	28818957	.	G	T	157.44	PASS	AC=2;AF=0.952;AN=2;DP=127;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,5:6:8:172,8,0:1,0,0,5
chr2	28821662	.	C	T	737.87	PASS	AC=2;AF=0.703;AN=2;DP=2844;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2773,261,0:0,0,24,64
chr2	28824303	.	C	G	97.21	PASS	AC=1;AF=0.575;AN=2;DP=333;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant15-variant20-variant25-variant28-variant30-variant32-variant33-variant35-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:383,0,346:3,8,2,10
chr2	28824793	.	C	G	1237.72	PASS	AC=2;AF=0.703;AN=2;DP=7084;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:6545,594,0:0,0,93,106
chr2	28824940	.	G	A	320.75	PASS	AC=1;AF=0.548;AN=2;DP=889;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant33-variant35-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,17:52:99:440,0,1129:7,28,2,15
chr2	28840344	.	G	T	540.4	PASS	AC=2;AF=0.671;AN=2;DP=860;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:984,75,0:0,0,23,2
chr2	28840691	.	C	T	1420.59	PASS	AC=1;AF=0.524;AN=2;DP=1725;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant33-variant35-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,52:107:99:1626,0,1557:16,39,10,42
chr2	28841021	.	G	A	239.14	PASS	AC=2;AF=0.676;AN=2;DP=893;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:860,78,0:0,0,19,7
chr2	28841049	.	G	A	151.61	PASS	AC=2;AF=0.609;AN=2;DP=1195;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1377,140,0:0,0,30,17
chr2	28842984	.	T	TC	716.95	PASS	AC=1;AF=0.533;AN=2;DP=717;MQ=60;set=variant6-variant7-variant10-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant33-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:884,0,793:17,10,19,10
chr2	28847806	.	C	G	1211.17	PASS	AC=2;AF=0.633;AN=2;DP=3497;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4279,420,0:0,0,82,58
chr2	28849461	.	CCCCGAGCTCCTTGCT	C	280.57	PASS	AC=1;AF=0.55;AN=2;DP=594;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:687,0,823:3,10,6,12
chr2	28851694	.	A	G	400.27	PASS	AC=1;AF=0.553;AN=2;DP=349;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,275:4,3,4,1
chr2	28853352	.	C	T	214.91	PASS	AC=1;AF=0.604;AN=2;DP=896;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,30:49:99:860,0,580:17,2,22,8
chr2	28853377	.	T	C	368.01	PASS	AC=1;AF=0.604;AN=2;DP=1332;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:1009,0,879:24,5,27,11
chr2	28854816	.	G	A	407.73	PASS	AC=1;AF=0.553;AN=2;DP=605;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:547,0,791:21,1,16,3
chr2	28854958	.	C	T	1615.29	PASS	AC=1;AF=0.55;AN=2;DP=3470;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,92:200:99:2122,0,2721:55,53,46,46
chr2	28855088	.	CT	CTTT,CTT,C	1528.5	PASS	AC=1,0,0;AF=0.379,0.121,0.121;AN=2;DP=3696;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:86:99:19,24,20,23
chr2	28855254	.	G	GGGATAGAAT	237.6	PASS	AC=1;AF=0.553;AN=2;DP=388;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:203,0,1224:4,9,1,5
chr2	28855918	.	A	AG	2451.93	PASS	AC=2;AF=1;AN=2;DP=5605;FS=0;MQ=60;MQRankSum=0.818;ReadPosRankSum=0.845;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:5011,427,0:0,0,65,73
chr2	28856047	.	T	C	773.4	PASS	AC=1;AF=0.55;AN=2;DP=1260;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,49:86:99:1272,0,892:13,24,18,31
chr2	28856195	.	A	G	88.71	PASS	AC=1;AF=0.567;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant15-variant25-variant28-variant30-variant32-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:67:183,0,67:0,2,1,5
chr2	28863738	.	A	G	124.67	PASS	AC=1;AF=0.55;AN=2;DP=1058;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,42:73:99:1019,0,680:17,14,24,18
chr2	28865760	.	T	C	634.44	PASS	AC=1;AF=0.615;AN=2;DP=2964;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,60:142:99:1506,0,2085:49,33,30,30
chr2	28865968	.	T	C	501.4	PASS	AC=1;AF=0.635;AN=2;DP=1569;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,31:80:99:792,0,1153:19,30,17,14
chr2	28866032	.	A	C	438.32	PASS	AC=1;AF=0.568;AN=2;DP=1139;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant28-variant30-variant32-variant34-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:694,0,737:11,18,12,12
chr2	28866469	.	A	C	380.3	PASS	AC=1;AF=0.635;AN=2;DP=1139;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:933,0,359:8,8,16,16
chr2	28975107	.	G	C	2304.86	PASS	AC=1;AF=0.782;AN=2;DP=2712;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:1357,0,1718:13,42,9,35
chr2	29004923	.	G	A	457.42	PASS	AC=2;AF=1;AN=2;DP=531;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:658,51,0:0,0,2,15
chr2	29023092	.	CTTT	CTT,CTTTT,C,CT,CTTTTTT,CTTTTTTTTTTTTT	578.73	PASS	AC=0,1,0,0,0,1;AF=0.271,0.171,0.043,0.1,0.014,0.014;AN=2;DP=3320;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-filterInvariant9-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant24-filterInvariant28-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant39-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	2/6:53:99:1,12,14,26
chr2	29045323	.	C	T	1920.76	PASS	AC=2;AF=1;AN=2;DP=2713;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2474,255,0:0,0,40,45
chr2	29045471	.	T	A	165.13	PASS	AC=1;AF=0.5;AN=2;DP=46;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant33-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:193,0,227:0,6,1,5
chr2	29052256	.	T	C	311.99	PASS	AC=2;AF=0.907;AN=2;DP=1366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:795,63,0:0,0,3,18
chr2	29075199	.	A	T	302.56	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.061;QD=20.17;ReadPosRankSum=0.184;SOR=1.473;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:331,0,133:5,0,10,0
chr2	29087814	.	C	A	1217.6	PASS	AC=2;AF=0.7;AN=2;DP=911;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant31-variant33-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1436,120,0:0,0,31,9
chr2	29092679	.	T	C	3235.53	PASS	AC=2;AF=0.7;AN=2;DP=2889;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant31-variant33-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4294,423,0:0,0,75,66
chr2	29092850	.	G	T	4943.54	PASS	AC=2;AF=0.7;AN=2;DP=4812;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant31-variant33-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,210:211:99:6416,617,0:1,0,116,94
chr2	29129300	.	ATT	AT,A,ATTT	45.11	PASS	AC=1,0,0;AF=0.5,0.015,0.015;AN=2;DP=2102;set=filterInvariant-variant3-variant4-variant5-variant6-variant9-filterInvariant10-variant11-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant32-variant34-filterInvariant37-variant38-variant40-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:73:99:17,13,25,18
chr2	29129418	.	A	G	1270.69	PASS	AC=1;AF=0.6;AN=2;DP=1270;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,30:78:99:664,0,1230:23,25,11,19
chr2	29135468	.	C	G	1863.44	PASS	AC=1;AF=0.797;AN=2;DP=5753;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,75:187:99:1628,0,2663:58,54,40,35
chr2	29136489	.	G	T	881.93	PASS	AC=1;AF=0.6;AN=2;DP=759;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:544,0,906:22,12,14,8
chr2	29136623	.	T	C	1166.11	PASS	AC=1;AF=0.6;AN=2;DP=1064;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,42:99:99:1067,0,1511:26,31,17,25
chr2	29136653	.	T	C	858.35	PASS	AC=1;AF=0.6;AN=2;DP=920;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:957,0,1220:22,25,16,21
chr2	29136685	.	C	T	508.82	PASS	AC=1;AF=0.6;AN=2;DP=762;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:758,0,1018:18,23,12,18
chr2	29140711	.	G	A	1781.05	PASS	AC=1;AF=0.6;AN=2;DP=1919;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,84:167:99:1957,0,2137:40,43,40,44
chr2	29145663	.	GTT	G,GT,GTTTT,GTTTTT,GTTTTTT,GTTT,GTTTTTTT	1161.83	PASS	AC=0,1,0,0,0,0,0;AF=0.023,0.186,0.128,0.186,0.163,0.023,0.035;AN=2;DP=2496;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:86:99:36,15,24,11
chr2	29145725	.	G	T	1761.22	PASS	AC=1;AF=0.797;AN=2;DP=4430;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,64:148:99:1646,0,2272:37,47,32,32
chr2	29152376	.	A	T	130.95	PASS	AC=1;AF=0.5;AN=2;DP=114;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant19-variant21-variant25-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:156,0,192:4,1,4,2
chr2	29152384	.	T	G	454.27	PASS	AC=1;AF=0.618;AN=2;DP=328;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant9-variant14-variant15-variant22-variant25-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:143,0,368:8,2,5,1
chr2	29152456	.	A	G	151.18	PASS	AC=1;AF=0.775;AN=2;DP=2422;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,16:52:99:321,0,958:23,13,9,7
chr2	29161010	.	G	A	1448.37	PASS	AC=2;AF=0.92;AN=2;DP=3861;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3752,373,0:0,0,55,70
chr2	29161173	.	G	C	412.06	PASS	AC=1;AF=0.633;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant14-variant15-variant22-variant25-variant31-variant33-variant35-variant36-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:96:377,0,96:0,3,1,10
chr2	29164022	.	G	T	82.49	PASS	AC=1;AF=0.615;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant16-variant17-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:220,0,110:2,1,6,0
chr2	29169612	.	T	C	1203.92	PASS	AC=1;AF=0.789;AN=2;DP=3273;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,69:118:99:1858,0,1511:30,19,36,33
chr2	29170623	.	G	T	540.98	PASS	AC=1;AF=0.6;AN=2;DP=604;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:627,0,652:14,12,16,12
chr2	29170676	.	G	C	533.17	PASS	AC=1;AF=0.6;AN=2;DP=696;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:574,0,469:14,9,16,12
chr2	29170730	.	GTT	G,GTTTT,GT,GTTTTT,GTTT,GTTTTTT	54.88	PASS	AC=1,1,0,0,0,0;AF=0.214,0.086,0.257,0.057,0.014,0.014;AN=2;DP=1583;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:20:99:0,0,7,13
chr2	29171085	.	A	T	1133.09	PASS	AC=1;AF=0.6;AN=2;DP=804;MQ=60;set=variant3-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:712,0,808:10,20,9,19
chr2	29222070	.	G	A	1240.61	PASS	AC=1;AF=0.556;AN=2;DP=2401;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant18-variant21-variant22-variant25-variant33-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,58:134:99:1358,0,1870:39,37,32,26
chr2	29222388	.	G	C	596.78	PASS	AC=1;AF=0.674;AN=2;DP=979;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant22-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:699,0,402:3,11,10,14
chr2	29226498	.	G	A	1071.21	PASS	AC=2;AF=0.814;AN=2;DP=4934;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4423,433,0:0,0,51,94
chr2	29226512	.	A	G	880	PASS	AC=2;AF=0.942;AN=2;DP=4238;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,119:120:99:3855,328,0:1,0,35,84
chr2	29226559	.	C	T	431.44	PASS	AC=2;AF=0.93;AN=2;DP=1896;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1884,164,0:0,0,12,43
chr2	29239942	.	T	G	911.36	PASS	AC=1;AF=0.559;AN=2;DP=1467;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant18-variant22-variant25-variant33-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1178,0,1235:33,22,27,22
chr2	29240005	.	T	C	1534.17	PASS	AC=1;AF=0.729;AN=2;DP=4301;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,75:144:99:1851,0,1559:34,35,35,40
chr2	29240060	.	A	G	1039.08	PASS	AC=1;AF=0.559;AN=2;DP=1650;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant18-variant22-variant25-variant33-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,53:117:99:1244,0,1647:26,38,22,31
chr2	29240582	.	T	C	391.5	PASS	AC=1;AF=0.559;AN=2;DP=912;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant18-variant22-variant25-variant33-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:723,0,887:21,15,17,11
chr2	29240673	.	G	A	1000.01	PASS	AC=1;AF=0.559;AN=2;DP=2354;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant18-variant22-variant25-variant33-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,66:157:99:1436,0,2148:51,40,38,28
chr2	29240686	.	A	C	1017.72	PASS	AC=1;AF=0.559;AN=2;DP=2534;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant18-variant22-variant25-variant33-variant35-variant36-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,71:170:99:1569,0,2280:55,44,40,31
chr2	29240783	.	A	G	935.12	PASS	AC=1;AF=0.64;AN=2;DP=3131;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant22-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:85,80:165:99:1805,0,2032:33,52,37,43
chr2	29249403	.	T	A,G	309.4	PASS	AC=1,1;AF=0.453,0.234;AN=2;DP=869;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/2:26:99:0,0,19,7
chr2	29249415	.	C	T	398.43	PASS	AC=2;AF=0.688;AN=2;DP=1047;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:953,87,0:0,0,21,8
chr2	29249903	.	G	C	108.35	PASS	AC=1;AF=0.5;AN=2;DP=350;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant15-variant18-variant22-variant25-variant31-variant33-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:370,0,363:6,9,5,10
chr2	29274720	.	A	G	2272.74	PASS	AC=1;AF=0.618;AN=2;DP=7538;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,116:208:99:3062,0,2170:48,44,57,59
chr2	29275272	.	T	C	598.01	PASS	AC=1;AF=0.743;AN=2;DP=1743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:890,0,370:9,7,17,15
chr2	29275318	.	T	C	777.74	PASS	AC=2;AF=0.841;AN=2;DP=2245;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1601,153,0:0,0,25,26
chr2	29275612	.	A	G	637.8	PASS	AC=2;AF=0.791;AN=2;DP=2580;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2295,200,0:0,0,33,34
chr2	29275940	.	A	G	1154.6	PASS	AC=1;AF=0.757;AN=2;DP=3053;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:1357,0,1262:27,26,28,27
chr2	29276010	.	G	T	333.67	PASS	AC=1;AF=0.615;AN=2;DP=1794;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:968,0,883:16,16,20,18
chr2	29276061	.	T	C	298.08	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=383;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:49,19:68:99:210,0,1532:13,36,19,0
chr2	29276630	.	T	C	39.79	PASS	AC=1;AF=0.615;AN=2;DP=829;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:347,0,586:14,10,8,7
chr2	29277200	.	T	C	254.7	PASS	AC=1;AF=0.677;AN=2;DP=1034;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:641,0,568:9,12,6,14
chr2	29277355	.	C	G	229.36	PASS	AC=1;AF=0.677;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:214,0,519:11,2,3,4
chr2	29277391	.	CGG	CG,GGG,TGG,C	250.41	PASS	AC=1,0,0,0;AF=0.455,0.227,0.045,0.045;AN=2;DP=235;FS=0;MQ=60;set=variant16-variant15-variant18-variant27-variant31-variant33-variant14-variant36-variant28-variant38-variant41	GT:DP:GQ:SB	0/1:18:99:5,0,13,0
chr2	29279251	.	A	AT	632.14	PASS	AC=2;AF=1;AN=2;DP=1506;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:794,84,0:0,0,11,17
chr2	29280153	.	G	T	49.19	PASS	AC=1;AF=0.683;AN=2;DP=1426;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,40:68:99:1020,0,682:16,12,25,15
chr2	29280261	.	A	G	490.11	PASS	AC=1;AF=0.615;AN=2;DP=1933;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1208,0,1119:25,20,25,25
chr2	29280745	.	G	A	435.94	PASS	AC=1;AF=0.683;AN=2;DP=1492;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,26:58:99:653,0,835:14,18,10,16
chr2	29280761	.	C	T	380.24	PASS	AC=1;AF=0.615;AN=2;DP=1306;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:685,0,968:17,20,12,16
chr2	29280791	.	G	A	375.72	PASS	AC=1;AF=0.615;AN=2;DP=1382;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:756,0,957:16,20,12,14
chr2	29281046	.	C	T	449.11	PASS	AC=1;AF=0.5;AN=2;DP=219;MQ=60;set=variant9-variant15-variant22-variant39	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:1018,0,880:16,18,22,18
chr2	29281458	.	G	A	382.45	PASS	AC=2;AF=1;AN=2;DP=650;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.714;ReadPosRankSum=1.531;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:718,68,0:0,0,12,11
chr2	29281584	.	G	C	60.2	PASS	AC=1;AF=0.615;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:265,0,310:6,5,5,7
chr2	29281797	.	GT	G	233.91	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=326;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,19:82:99:271,0,1504:47,16,9,10
chr2	29281799	.	GT	G	233.97	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=326;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:62,19:81:99:271,0,1504:46,16,9,10
chr2	29281800	.	T	G,TGG	5450.61	PASS	AC=1,0;AF=0.281,0.359;AN=2;DP=4527;set=variant3-variant8-variant-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-filterInvariant24-variant25-variant26-variant27-variant29-variant2-variant4-variant30-variant32-filterInvariant33-variant10-variant35-variant36-variant37-filterInvariant38-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:81:99:9,10,46,16
chr2	29281804	.	T	G,TGG,TGGGTGG,TGTGG	6417.9	PASS	AC=2,0,0,0;AF=0.667,0.25,0.014,0.014;AN=2;DP=5522;set=variant2-variant4-variant5-variant-variant7-variant3-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:DP:GQ:SB	1/1:128:99:0,1,69,58
chr2	29281867	.	A	G	3121.64	PASS	AC=1;AF=0.615;AN=2;DP=5314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,67:210:99:1395,0,4034:62,81,39,28
chr2	29283072	.	C	T	346.67	PASS	AC=1;AF=0.683;AN=2;DP=1679;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,37:85:99:1075,0,1270:21,27,15,22
chr2	29283421	.	G	A	589.29	PASS	AC=1;AF=0.683;AN=2;DP=1957;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,52:87:99:1482,0,903:16,19,21,31
chr2	29284806	.	A	G	2414.27	PASS	AC=2;AF=0.977;AN=2;DP=4125;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3272,323,0:0,0,58,50
chr2	29284981	.	T	C	716.2	PASS	AC=1;AF=0.775;AN=2;DP=2401;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:632,0,950:18,21,11,15
chr2	29285065	.	A	G	1341.48	PASS	AC=2;AF=0.955;AN=2;DP=2313;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1516,132,0:0,0,19,25
chr2	29285150	.	T	C	1317.2	PASS	AC=2;AF=0.989;AN=2;DP=2886;FS=0;MQ=60;MQRankSum=-0.257;ReadPosRankSum=0.105;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2253,219,0:0,0,43,30
chr2	29285210	.	C	T	1914.03	PASS	AC=1;AF=0.708;AN=2;DP=3132;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:1228,0,1392:31,18,31,18
chr2	29285456	.	C	T	1425.19	PASS	AC=1;AF=0.55;AN=2;DP=4320;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,84:213:99:1847,0,3110:57,72,41,43
chr2	29285575	.	C	T	2008.05	PASS	AC=1;AF=0.681;AN=2;DP=3440;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,47:100:99:1184,0,1437:22,31,21,26
chr2	29285631	.	A	G	1810.9	PASS	AC=1;AF=0.681;AN=2;DP=2648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:997,0,1138:24,24,17,24
chr2	29285713	.	C	T	1499.12	PASS	AC=1;AF=0.681;AN=2;DP=2100;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:843,0,1079:20,20,15,20
chr2	29286072	.	G	A	3501.56	PASS	AC=1;AF=0.671;AN=2;DP=5561;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,85:170:99:2036,0,2064:37,48,40,45
chr2	29286193	.	T	C	1529.43	PASS	AC=1;AF=0.708;AN=2;DP=2610;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1232,0,1438:25,30,20,25
chr2	29354061	.	T	A	40.7	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=6.78;ReadPosRankSum=1.38;SOR=0.039;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:69:69,0,568:4,0,1,1
chr2	29354062	.	T	A	40.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=5.81;ReadPosRankSum=0.922;SOR=0.027;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,568:5,0,1,1
chr2	29354064	.	T	G	40.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.922;QD=5.81;ReadPosRankSum=0.922;SOR=0.027;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,568:5,0,1,1
chr2	29355303	.	C	T	377.99	PASS	AC=2;AF=0.811;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:309,21,0:0,0,0,7
chr2	29356669	.	A	G	1651.49	PASS	AC=1;AF=0.683;AN=2;DP=1868;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,26:68:99:704,0,1099:17,25,8,18
chr2	29356728	.	T	C	532.31	PASS	AC=1;AF=0.533;AN=2;DP=417;MQ=60;set=variant2-variant3-variant4-variant11-variant14-variant15-variant16-variant19-variant24-variant26-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:441,0,668:5,17,3,12
chr2	29366830	.	A	G	781.51	PASS	AC=2;AF=0.615;AN=2;DP=2391;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3310,317,0:0,0,42,64
chr2	29366875	.	C	CACAG	615.91	PASS	AC=2;AF=0.702;AN=2;DP=2546;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2847,195,0:0,0,21,44
chr2	29383374	.	G	A	1067.04	PASS	AC=2;AF=0.907;AN=2;DP=1966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2153,204,0:0,0,23,45
chr2	29386646	.	G	C	1038.33	PASS	AC=1;AF=0.625;AN=2;DP=2489;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant34-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,59:96:99:1529,0,916:24,13,38,21
chr2	29390245	.	T	C	1056.47	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0.938;FractionInformativeReads=1;MQ=60;MQRankSum=-0.537;QD=15.09;ReadPosRankSum=-0.799;SOR=0.95;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:29,41:70:99:1085,0,604:16,13,25,16
chr2	29415792	.	G	A	11423.7	PASS	AC=2;AF=1;AN=2;DP=13812;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,372:372:99:11483,1115,0:0,0,209,163
chr2	29416025	.	C	CATTG	6826.01	PASS	AC=1;AF=0.529;AN=2;DP=5514;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant31-variant32-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:177,160:337:99:6134,0,7885:64,113,68,92
chr2	29416366	.	G	C	4438.45	PASS	AC=2;AF=0.625;AN=2;DP=4741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant22-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6336,614,0:0,0,99,106
chr2	29416481	.	T	C	1209.33	PASS	AC=1;AF=0.529;AN=2;DP=2863;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant31-variant32-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,85:185:99:1876,0,2684:51,49,43,42
chr2	29416572	.	T	C	3238.45	PASS	AC=2;AF=1;AN=2;DP=6578;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4947,459,0:0,0,72,81
chr2	29416615	.	G	A	1189.68	PASS	AC=1;AF=0.5;AN=2;DP=1448;MQ=60;set=variant-variant3-variant8-variant10-variant15-variant22-variant24-variant26-variant30-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,71:144:99:2019,0,2021:40,33,32,39
chr2	29416794	.	G	A	1691.18	PASS	AC=1;AF=0.5;AN=2;DP=1314;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant15-variant22-variant24-variant26-variant30-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,81:149:99:1888,0,1739:30,38,35,46
chr2	29416946	.	T	C	187.16	PASS	AC=1;AF=0.531;AN=2;DP=234;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant32-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:312,0,134:1,4,0,10
chr2	29420315	.	C	T	307.3	PASS	AC=1;AF=0.531;AN=2;DP=753;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant31-variant32-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,36:62:99:850,0,623:15,11,22,14
chr2	29429888	.	G	A	2318.33	PASS	AC=2;AF=0.797;AN=2;DP=2242;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2375,224,0:0,0,49,26
chr2	29430519	.	G	T	76.97	PASS	AC=1;AF=0.571;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant31-variant32-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:135,0,308:6,4,4,0
chr2	29430942	.	GTC	G	1100.46	PASS	AC=1;AF=0.529;AN=2;DP=1256;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant31-variant32-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1713,0,1801:21,32,16,34
chr2	29444076	.	G	T	1015.86	PASS	AC=1;AF=0.533;AN=2;DP=1632;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,75:132:99:1884,0,1402:22,35,34,41
chr2	29444095	.	C	T	2423.91	PASS	AC=2;AF=0.989;AN=2;DP=4515;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3892,377,0:0,0,54,72
chr2	29445157	.	G	C	1450.17	PASS	AC=1;AF=0.5;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:55,57:112:99:1484,0,1506:31,24,31,26
chr2	29445458	.	G	T	303.47	PASS	AC=1;AF=0.533;AN=2;DP=760;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:523,0,658:8,16,8,14
chr2	29446128	.	A	G	240.43	PASS	AC=1;AF=0.5;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant10-variant15-variant22-variant24-variant26-variant30-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:684,0,345:11,4,17,3
chr2	29446184	.	C	G	538.22	PASS	AC=1;AF=0.531;AN=2;DP=1425;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant24-variant27-variant32-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,47:99:99:1160,0,1357:35,17,30,17
chr2	29449819	.	C	T	1175.11	PASS	AC=1;AF=0.595;AN=2;DP=2013;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant10-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant28-variant30-variant34-variant35-variant36-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1028,0,1461:35,27,27,23
chr2	29451790	.	T	C	566.19	PASS	AC=1;AF=0.5;AN=2;DP=947;set=filterInvariant2-filterInvariant5-variant7-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-filterInvariant22-variant23-variant24-variant27-filterInvariant28-filterInvariant31-variant33-variant34-variant35-variant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:252,0,3009:2,26,12,0
chr2	29451793	.	A	C	569.19	PASS	AC=1;AF=0.5;AN=2;DP=891;set=filterInvariant2-filterInvariant5-variant7-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-filterInvariant22-variant23-variant24-variant27-filterInvariant28-filterInvariant31-variant33-variant34-variant35-variant38-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:27,11:38:99:252,0,3009:2,25,11,0
chr2	29451798	.	CTCCGAAA	C	287.33	PASS	AC=1;AF=0.5;AN=2;DP=681;MQ=60;set=variant5-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant27-variant28-variant33-variant34-variant35-filterInvariant38-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,11:41:99:239,0,3283:6,24,11,0
chr2	29455267	.	A	G	2055.45	PASS	AC=2;AF=0.813;AN=2;DP=4057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3199,309,0:0,0,54,49
chr2	29497967	.	G	A	2545.29	PASS	AC=1;AF=0.5;AN=2;DP=193;FS=2.474;FractionInformativeReads=1;MQ=60;MQRankSum=0.161;QD=13.19;ReadPosRankSum=-0.398;SOR=0.609;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:97,96:193:99:2574,0,2518:45,52,49,47
chr2	29498210	.	A	G	3049.07	PASS	AC=2;AF=0.955;AN=2;DP=3516;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3728,309,0:0,0,64,39
chr2	29519622	.	C	T	1121.13	PASS	AC=2;AF=0.893;AN=2;DP=1976;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1684,144,0:0,0,38,10
chr2	29525341	.	A	G	643.53	PASS	AC=2;AF=0.932;AN=2;DP=842;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1174,81,0:0,0,24,3
chr2	29525345	.	T	C	103.61	PASS	AC=1;AF=0.841;AN=2;DP=878;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:687,0,236:7,2,17,2
chr2	29525654	.	C	T	409.51	PASS	AC=1;AF=0.798;AN=2;DP=1043;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:446,0,503:2,14,1,12
chr2	29543663	.	T	C	2769.5	PASS	AC=1;AF=0.864;AN=2;DP=4068;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,52:111:99:1336,0,1397:35,24,30,22
chr2	29543699	.	G	A	1870.28	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.786;QD=12.39;ReadPosRankSum=1.205;SOR=0.699;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:72,79:151:99:1899,0,1754:40,32,44,35
chr2	29917940	.	C	G	552.83	PASS	AC=1;AF=0.779;AN=2;DP=2782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:765,0,893:15,20,13,20
chr2	29940529	.	A	T	1364.21	PASS	AC=1;AF=0.779;AN=2;DP=4739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,82:165:99:1888,0,1890:46,37,46,36
chr2	29940820	.	C	T	321.52	PASS	AC=1;AF=0.779;AN=2;DP=722;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:297,0,297:0,8,1,8
chr2	30143499	.	G	C	1534.43	PASS	AC=2;AF=0.955;AN=2;DP=3279;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3705,329,0:0,0,55,55
chr2	30371358	.	T	C	426.35	PASS	AC=2;AF=0.762;AN=2;DP=760;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:723,72,0:0,0,10,14
chr2	30381505	.	T	C	4760.04	PASS	AC=2;AF=0.633;AN=2;DP=4774;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5997,559,0:0,0,103,84
chr2	30457561	.	A	G	114.18	PASS	AC=2;AF=0.618;AN=2;DP=486;MQ=60;set=variant2-variant9-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant28-variant31-variant35-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1126,99,0:0,0,10,23
chr2	30480656	.	CT	CTTTTTTT,CTT,C	532.42	PASS	AC=0,0,1;AF=0.25,0.083,0.167;AN=2;DP=304;MQ=60;set=variant7-filterInvariant9-variant15-variant21-filterInvariant33-variant40	GT:DP:GQ:SB	0/3:43:99:8,24,2,9
chr2	30480760	.	G	C	454.11	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant37	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:482,0,248:3,6,4,10
chr2	30682360	.	G	A	835.6	PASS	AC=1;AF=0.802;AN=2;DP=1852;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:594,0,905:24,9,16,10
chr2	30682470	.	A	T	1195.65	PASS	AC=1;AF=0.525;AN=2;DP=2370;MQ=60;set=variant2-variant3-variant7-variant10-variant11-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant34-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,66:140:99:1605,0,1821:39,35,37,29
chr2	30748321	.	A	G	1097.67	PASS	AC=1;AF=0.798;AN=2;DP=2053;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,27:73:99:790,0,1392:37,9,21,6
chr2	30748373	.	T	G	1178.2	PASS	AC=1;AF=0.545;AN=2;DP=2408;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant14-variant15-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant34-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,76:169:99:2152,0,2495:65,28,55,21
chr2	30775299	.	G	A	205.58	PASS	AC=1;AF=0.826;AN=2;DP=936;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:565,0,382:11,2,14,9
chr2	30791152	.	A	G	420.8	PASS	AC=1;AF=0.786;AN=2;DP=1158;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:495,0,837:2,21,6,15
chr2	30828792	.	G	A	438.96	PASS	AC=1;AF=0.738;AN=2;DP=2436;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,23:61:99:493,0,987:23,15,13,10
chr2	30863187	.	G	A	1658.95	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=1.454;FractionInformativeReads=1;MQ=60;MQRankSum=-0.422;QD=13.27;ReadPosRankSum=0.106;SOR=0.844;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:61,64:125:99:1687,0,1655:24,37,23,41
chr2	30863651	.	A	T	1991.28	PASS	AC=1;AF=0.543;AN=2;DP=3706;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant34-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,112:206:99:2769,0,2156:50,44,55,57
chr2	30864326	.	A	G	6747.91	PASS	AC=1;AF=0.826;AN=2;DP=16125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:249,206:455:99:4877,0,6094:121,128,99,107
chr2	30864789	.	G	A	162.82	PASS	AC=1;AF=0.587;AN=2;DP=323;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant29-variant32-variant34-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:185,0,242:3,4,1,4
chr2	30864980	.	A	G	534.68	PASS	AC=1;AF=0.81;AN=2;DP=1988;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:570,0,919:20,17,13,14
chr2	30865266	.	CTT	C,CT	238.31	PASS	AC=1,0;AF=0.762,0.071;AN=2;DP=899;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:16:99:2,3,4,7
chr2	30865273	.	T	C	247.29	PASS	AC=1;AF=0.8;AN=2;DP=875;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:472,0,193:2,3,5,8
chr2	30945896	.	A	G	1343.25	PASS	AC=2;AF=0.638;AN=2;DP=1688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2543,246,0:0,0,39,43
chr2	30955528	.	C	A	272.69	PASS	AC=2;AF=0.857;AN=2;DP=936;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:990,84,0:0,0,7,21
chr2	30959100	.	C	G	103.49	PASS	AC=2;AF=0.68;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:474,36,0:0,0,11,1
chr2	30959262	.	G	T	3671.58	PASS	AC=2;AF=0.838;AN=2;DP=5352;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5362,527,0:0,0,111,65
chr2	30968760	.	ATTTTT	ATTTTTT,AT,A,ATTTT,ATTTTTTT,ATTTTTTTTTTT,ATTT	232.31	PASS	AC=0,2,0,0,0,0,0;AF=0.054,0.268,0.161,0.036,0.089,0.018,0.036;AN=2;DP=834;set=variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant36-variant37-variant38-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:13:39:0,0,0,13
chr2	30976058	.	C	T	3408.78	PASS	AC=2;AF=0.625;AN=2;DP=3960;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4434,423,0:0,0,60,81
chr2	30977073	.	G	A	4284.08	PASS	AC=2;AF=0.895;AN=2;DP=4961;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4958,497,0:0,0,97,69
chr2	30980940	.	C	T	1517.15	PASS	AC=2;AF=0.813;AN=2;DP=2327;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1650,146,0:0,0,36,13
chr2	30986989	.	G	T	1958.13	PASS	AC=2;AF=0.92;AN=2;DP=5036;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4252,414,0:0,0,73,65
chr2	31000370	.	G	C	491.45	PASS	AC=2;AF=0.531;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant12-variant13-variant15-variant21-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1534,126,0:0,0,33,9
chr2	31009977	.	G	C	1009.95	PASS	AC=2;AF=0.898;AN=2;DP=1298;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1035,87,0:0,0,23,6
chr2	31030024	.	C	T	106.77	PASS	AC=1;AF=0.8;AN=2;DP=414;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:343,0,225:7,1,9,0
chr2	31152244	.	C	T	1023.21	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.562;QD=11.9;ReadPosRankSum=1.262;SOR=0.731;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:45,41:86:99:1051,0,1249:27,18,25,16
chr2	31152366	.	G	GGAGT	1541.62	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=0;FractionInformativeReads=0.948;MQ=60;MQRankSum=-0.691;QD=13.41;ReadPosRankSum=-1.038;SOR=0.74;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:66,43:109:99:1579,0,3723:30,36,19,24
chr2	31154990	.	G	C	2186.24	PASS	AC=1;AF=0.5;AN=2;DP=187;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.177;QD=11.69;ReadPosRankSum=2.528;SOR=0.673;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:94,93:187:99:2214,0,2444:48,46,47,46
chr2	31164930	.	C	G	204.69	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;QD=20.47;ReadPosRankSum=0.731;SOR=1.863;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:233,0,103:2,1,6,1
chr2	31165298	.	A	G	208.44	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=20.84;ReadPosRankSum=1.133;SOR=1.085;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:237,0,140:0,4,0,6
chr2	31168480	.	A	T	365.06	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:393,0,164:5,2,10,4
chr2	31188957	.	C	T	452.06	PASS	AC=2;AF=0.977;AN=2;DP=1033;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:730,68,0:0,0,18,5
chr2	31301634	.	G	T	209.7	PASS	AC=1;AF=0.5;AN=2;DP=91;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant15-variant22-variant32	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:187,0,312:8,1,6,0
chr2	31348335	.	ACC	A	1319.53	PASS	AC=1;AF=0.845;AN=2;DP=1463;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:654,0,721:5,15,3,15
chr2	31352176	.	A	T	123.6	PASS	AC=2;AF=0.615;AN=2;DP=345;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:410,39,0:0,0,8,5
chr2	31361399	.	CGACA	C	1996.74	PASS	AC=1;AF=0.75;AN=2;DP=5147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,66:150:99:2435,0,4377:39,45,28,38
chr2	31401290	.	A	C	2950.69	PASS	AC=2;AF=1;AN=2;DP=4633;FS=0;MQ=60;MQRankSum=0.027;ReadPosRankSum=-0.605;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4037,396,0:0,0,78,54
chr2	31410708	.	C	T	4640.73	PASS	AC=2;AF=1;AN=2;DP=6174;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5080,521,0:0,0,85,89
chr2	31414807	.	C	G	1799.48	PASS	AC=2;AF=0.955;AN=2;DP=4264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3470,347,0:0,0,60,56
chr2	31415967	.	T	C	738.54	PASS	AC=1;AF=0.636;AN=2;DP=789;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:312,0,434:12,3,8,1
chr2	31416213	.	T	C	2152.47	PASS	AC=1;AF=0.636;AN=2;DP=4245;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,100:203:99:2371,0,2250:44,59,46,54
chr2	31416305	.	C	T	511.77	PASS	AC=1;AF=0.641;AN=2;DP=1014;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,35:56:99:1323,0,2110:1,20,5,30
chr2	31416309	.	A	G	511.77	PASS	AC=1;AF=0.636;AN=2;DP=958;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:1231,0,2086:1,19,3,25
chr2	31416317	.	C	G	376.77	PASS	AC=1;AF=0.636;AN=2;DP=802;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,26:39:99:1044,0,1758:1,12,2,24
chr2	31420485	.	T	C	315.48	PASS	AC=2;AF=1;AN=2;DP=710;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:545,45,0:0,0,3,12
chr2	31424885	.	C	T	2042.16	PASS	AC=1;AF=0.645;AN=2;DP=2733;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:1225,0,1186:24,25,26,23
chr2	31428541	.	A	G	267.07	PASS	AC=1;AF=0.65;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:154,0,157:1,4,1,4
chr2	31440329	.	G	A	859.09	PASS	AC=1;AF=0.655;AN=2;DP=1217;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant32-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:673,0,380:9,9,14,14
chr2	31440370	.	C	T	862.61	PASS	AC=1;AF=0.655;AN=2;DP=1083;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant32-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:711,0,307:7,8,12,10
chr2	31457154	.	GGGGACCCCGGCTT	G	687.8	PASS	AC=2;AF=0.75;AN=2;DP=1012;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:97:1421,97,0:0,0,20,12
chr2	31457817	.	T	C	1352.35	PASS	AC=1;AF=0.697;AN=2;DP=1902;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:746,0,637:10,17,10,19
chr2	31457981	.	T	C	520.43	PASS	AC=2;AF=0.789;AN=2;DP=428;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:99,12,0:0,0,2,2
chr2	31467079	.	G	A	453.27	PASS	AC=1;AF=0.676;AN=2;DP=504;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:403,0,299:8,1,10,2
chr2	31467351	.	T	A	2152.78	PASS	AC=1;AF=0.705;AN=2;DP=3578;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1046,0,1145:22,27,15,27
chr2	31483890	.	T	C	677.99	PASS	AC=1;AF=0.808;AN=2;DP=1739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:924,0,670:4,19,2,25
chr2	31484334	.	G	A	1367.28	PASS	AC=2;AF=0.878;AN=2;DP=2231;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1783,162,0:0,0,34,20
chr2	31488965	.	C	T	329.76	PASS	AC=2;AF=0.878;AN=2;DP=974;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:948,75,0:0,0,20,5
chr2	31489627	.	TACACACACACACAC	TACACACACACACACAC,TACACACACACACACACAC,TACACACACACAC,TACACACACACACACACACAC,TACACACACAC,TACACACAC,T	963.84	PASS	AC=0,0,0,0,0,1,0;AF=0.051,0.103,0.231,0.077,0.013,0.064,0.013;AN=2;DP=2865;set=variant-variant2-variant3-filterInvariant4-variant5-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant39-filterInvariant40-variant41-variant43	GT:DP:GQ:SB	0/6:80:99:15,24,19,22
chr2	31489727	.	T	C	2533.73	PASS	AC=2;AF=0.89;AN=2;DP=3570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3590,324,0:0,0,50,58
chr2	31489826	.	G	C	1439.51	PASS	AC=1;AF=0.5;AN=2;DP=729;MQ=60;set=variant9-variant10-variant15-variant29-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,54:107:99:1456,0,1293:23,30,30,24
chr2	31490716	.	C	G	1476.62	PASS	AC=2;AF=0.854;AN=2;DP=3090;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2495,246,0:0,0,42,40
chr2	31491075	.	A	G	1257.82	PASS	AC=1;AF=0.5;AN=2;DP=912;MQ=60;set=variant10-variant15-variant21-variant26-variant30-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,67:132:99:1602,0,1843:35,30,35,32
chr2	31491190	.	A	G	1963.16	PASS	AC=1;AF=0.5;AN=2;DP=922;MQ=60;set=variant15-variant21-variant26-variant30-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,77:159:99:1991,0,2169:36,46,37,40
chr2	31491468	.	C	T	250.31	PASS	AC=1;AF=0.5;AN=2;DP=199;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant18-variant34-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:300,0,726:8,17,7,5
chr2	31491629	.	A	G	389.94	PASS	AC=1;AF=0.5;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant18-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:620,0,916:21,8,13,11
chr2	31491690	.	T	C	561.22	PASS	AC=1;AF=0.5;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant18-variant34-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,26:74:99:671,0,1198:25,23,14,12
chr2	31557308	.	G	A	1864.72	PASS	AC=1;AF=0.638;AN=2;DP=2039;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,26:70:99:655,0,1274:26,18,16,10
chr2	31557347	.	T	C	2466.35	PASS	AC=1;AF=0.63;AN=2;DP=1919;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,50:86:99:1433,0,1010:24,12,26,24
chr2	31558306	.	T	C	8612.99	PASS	AC=1;AF=0.643;AN=2;DP=7706;MQ=60;set=variant2-variant4-variant5-variant7-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:159,133:292:99:3331,0,3956:73,86,63,70
chr2	31567632	.	T	G	1218.37	PASS	AC=2;AF=0.611;AN=2;DP=1394;MQ=60;set=variant6-variant7-variant10-variant15-variant25-variant32-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:6171,590,0:0,0,101,96
chr2	31567743	.	T	C	2923.84	PASS	AC=2;AF=0.977;AN=2;DP=5168;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4387,408,0:0,0,50,86
chr2	31569471	.	A	G	1005.13	PASS	AC=1;AF=0.718;AN=2;DP=1194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:422,0,597:15,5,12,4
chr2	31570376	.	T	C	2273.65	PASS	AC=1;AF=0.711;AN=2;DP=2518;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:906,0,858:20,11,22,14
chr2	31570626	.	C	T	691.77	PASS	AC=1;AF=0.718;AN=2;DP=1260;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:530,0,1138:3,15,4,10
chr2	31570631	.	A	G	691.77	PASS	AC=1;AF=0.718;AN=2;DP=1135;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:501,0,1053:2,13,4,9
chr2	31571241	.	G	C	3250.88	PASS	AC=1;AF=0.711;AN=2;DP=5062;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,80:144:99:2048,0,1744:28,36,38,42
chr2	31571786	.	A	G	2668.28	PASS	AC=1;AF=0.718;AN=2;DP=3241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,51:92:99:1221,0,883:18,23,23,28
chr2	31572398	.	A	G	943.21	PASS	AC=1;AF=0.7;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:462,0,340:10,1,12,4
chr2	31572482	.	T	TG	2570.32	PASS	AC=1;AF=0.711;AN=2;DP=3040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,46:86:99:1216,0,1048:23,17,27,19
chr2	31587235	.	G	A	1414.14	PASS	AC=1;AF=0.724;AN=2;DP=1979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:796,0,623:6,18,10,21
chr2	31588288	.	T	A	1920.54	PASS	AC=1;AF=0.714;AN=2;DP=4318;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,71:130:99:1602,0,1470:30,29,38,33
chr2	31589654	.	T	C	321.14	PASS	AC=1;AF=0.571;AN=2;DP=465;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant12-filterInvariant13-variant15-variant16-variant17-variant23-variant25-variant26-variant32-variant34-variant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:675,0,404:11,3,18,2
chr2	31590759	.	C	T	633.54	PASS	AC=1;AF=0.575;AN=2;DP=1020;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant12-variant13-variant15-variant16-variant17-variant23-variant25-variant26-variant32-variant34-variant35-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:628,0,787:20,10,19,5
chr2	31596738	.	C	G	2017.94	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0.633;FractionInformativeReads=1;MQ=60;MQRankSum=1.846;QD=14.31;ReadPosRankSum=0.957;SOR=0.775;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:58,83:141:99:2046,0,1399:31,27,46,37
chr2	31596955	.	G	A	566.51	PASS	AC=1;AF=0.62;AN=2;DP=1332;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant23-variant25-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,52:97:99:2005,0,2256:17,28,24,28
chr2	31596963	.	T	C	578.51	PASS	AC=1;AF=0.62;AN=2;DP=1248;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant23-variant25-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,49:89:99:1937,0,2149:15,25,22,27
chr2	31600017	.	C	T	1557.44	PASS	AC=1;AF=0.5;AN=2;DP=286;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:89,68:157:99:1586,0,2275:37,52,30,38
chr2	31600146	.	T	C	1102.23	PASS	AC=1;AF=0.718;AN=2;DP=1400;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:488,0,465:5,12,0,13
chr2	31606985	.	AGTGTGT	AGTGTGTGTGT,AGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGT,AGTGTGTGT	52.37	PASS	AC=0,2,0,0,0,0,0;AF=0.067,0.3,0.383,0.05,0.017,0.117,0.017;AN=2;DP=353;FS=0;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:10:28:0,0,3,7
chr2	31609448	.	A	C	2980.15	PASS	AC=2;AF=1;AN=2;DP=4388;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3356,330,0:0,0,50,60
chr2	31610692	.	A	G	1852.26	PASS	AC=1;AF=0.5;AN=2;DP=144;FS=1.305;FractionInformativeReads=1;MQ=60;MQRankSum=0.118;QD=12.86;ReadPosRankSum=0.908;SOR=0.582;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:66,78:144:99:1880,0,1416:35,31,39,39
chr2	31611029	.	G	A	342.61	PASS	AC=2;AF=0.65;AN=2;DP=868;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1162,99,0:0,0,23,10
chr2	31611367	.	T	C	412.53	PASS	AC=2;AF=0.73;AN=2;DP=706;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:525,42,0:0,0,2,12
chr2	31625797	.	A	G	1289.96	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant15-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,53:88:99:1318,0,864:24,11,32,21
chr2	31626045	.	G	C	612.75	PASS	AC=1;AF=0.5;AN=2;DP=595;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant10-variant15-variant19-variant23-variant30-variant34-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:510,0,792:10,19,4,14
chr2	31628705	.	T	G	1356.85	PASS	AC=1;AF=0.5;AN=2;DP=1014;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant15-variant19-variant34-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,66:144:99:1561,0,1947:39,39,32,34
chr2	31751223	.	C	T	989.59	PASS	AC=1;AF=0.5;AN=2;DP=383;MQ=60;set=variant7-variant8-variant15-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,67:133:99:1664,0,1624:35,31,33,34
chr2	31756631	.	G	GGGGCATTTAATTCCAAAAAATGAAGGGAA	466	PASS	AC=1;AF=0.531;AN=2;DP=397;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant14-variant15-variant23-variant25-variant30-variant31-variant32-variant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,7:28:99:204,0,4683:6,15,2,5
chr2	31805619	.	T	C	1068.92	PASS	AC=2;AF=1;AN=2;DP=2831;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2699,260,0:0,0,56,31
chr2	31805675	.	A	G	2934.18	PASS	AC=1;AF=0.77;AN=2;DP=4440;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,77:144:99:1834,0,1591:42,25,46,31
chr2	31805706	.	G	C	4022.12	PASS	AC=2;AF=0.816;AN=2;DP=5909;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:6114,589,0:0,0,113,84
chr2	31805880	.	A	AG	6101.78	PASS	AC=2;AF=1;AN=2;DP=9466;FS=0;MQ=60;MQRankSum=-0.767;ReadPosRankSum=-1.498;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,266:266:99:9468,800,0:0,0,117,149
chr2	31806031	.	C	G	988.28	PASS	AC=1;AF=0.77;AN=2;DP=1564;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:839,0,435:6,11,7,22
chr2	32312495	.	C	A	434.44	PASS	AC=1;AF=0.6;AN=2;DP=187;MQ=60;set=variant3-variant8-variant10-variant15-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:305,0,730:18,6,10,6
chr2	32369901	.	T	C	415.31	PASS	AC=1;AF=0.953;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:350,0,144:5,0,8,2
chr2	32381109	.	G	T	185.03	PASS	AC=1;AF=0.524;AN=2;DP=318;set=variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant20-variant23-variant26-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,13:19:92:354,0,92:2,4,2,11
chr2	32381727	.	A	AAGG	9413.37	PASS	AC=1;AF=0.943;AN=2;DP=8118;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:121,130:251:99:5223,0,5363:63,58,70,60
chr2	32402636	.	C	T	219.12	PASS	AC=1;AF=0.571;AN=2;DP=497;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant12-variant13-variant15-variant16-variant17-variant20-variant23-variant26-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:229,0,433:11,7,7,4
chr2	32418808	.	T	A	1587.3	PASS	AC=2;AF=0.816;AN=2;DP=1663;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2157,201,0:0,0,45,22
chr2	32434701	.	A	G	820.42	PASS	AC=2;AF=0.803;AN=2;DP=612;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:596,60,0:0,0,7,13
chr2	32446613	.	A	G	848.66	PASS	AC=2;AF=0.682;AN=2;DP=3415;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3096,320,0:0,0,57,50
chr2	32447718	.	C	T	3172.39	PASS	AC=2;AF=0.691;AN=2;DP=7793;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:7505,729,0:0,0,121,123
chr2	32447868	.	A	G	1964.58	PASS	AC=2;AF=0.722;AN=2;DP=3805;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:4052,366,0:0,0,41,81
chr2	32449871	.	ATTTTT	AT,A	914.62	PASS	AC=2,0;AF=0.662,0.015;AN=2;DP=987;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:33:99:0,0,6,27
chr2	32449879	.	T	A,TAAA	537.73	PASS	AC=0,2;AF=0.022,0.652;AN=2;DP=581;MQ=60;set=variant11-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:27:81:0,0,5,22
chr2	32460348	.	A	G	37.69	PASS	AC=2;AF=0.735;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:484,36,0:0,0,11,1
chr2	32461493	.	T	TC	227.83	PASS	AC=2;AF=0.964;AN=2;DP=394;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:598,48,0:0,0,3,13
chr2	32466029	.	A	G	1031.5	PASS	AC=2;AF=0.722;AN=2;DP=2140;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2351,233,0:0,0,47,31
chr2	32475109	.	G	A	2107.34	PASS	AC=2;AF=0.714;AN=2;DP=5833;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5421,527,0:0,0,76,100
chr2	32476390	.	T	G	1806.37	PASS	AC=2;AF=0.714;AN=2;DP=5821;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6396,612,0:0,0,93,111
chr2	32481793	.	AT	A	2769.05	PASS	AC=2;AF=0.714;AN=2;DP=4079;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:7196,488,0:0,0,89,70
chr2	32481795	.	T	A	2778.11	PASS	AC=2;AF=0.714;AN=2;DP=4101;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:7196,488,0:0,0,90,72
chr2	32489851	.	T	C	598.07	PASS	AC=2;AF=0.77;AN=2;DP=1036;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:879,87,0:0,0,16,13
chr2	32530799	.	T	C	16911.8	PASS	AC=1;AF=0.563;AN=2;DP=3239;MQ=60;set=variant3-variant4-variant14-variant15-variant18-variant22-variant24-variant34	GT:AD:DP:GQ:PL:SB	0/1:218,194:412:99:4502,0,5072:105,113,101,93
chr2	32531207	.	CTT	C	231.95	PASS	AC=1;AF=0.548;AN=2;DP=244;MQ=60;set=variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant26-variant27-variant28-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:266,0,302:6,2,3,4
chr2	32534099	.	CAAA	CA,CAA,C,CAAAA	142.8	PASS	AC=0,1,0,0;AF=0.133,0.3,0.033,0.033;AN=2;DP=173;set=variant3-variant10-variant13-variant15-variant17-variant22-variant24-variant28-variant32-variant33-variant36-variant38-variant39-variant43-variant44	GT:DP:GQ:SB	0/2:10:33:2,1,7,0
chr2	32534750	.	CTTTTTTTTTTTTTTT	CTTTTTTTTTTTT,C,CTTTTTTTTTTT,CTTTTTTTTTTTTTT,CTTTTTTTTTTTTT	127.49	PASS	AC=0,1,0,0,0;AF=0.032,0.403,0.032,0.032,0.065;AN=2;DP=1246;set=variant2-variant5-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:29:99:4,10,4,11
chr2	32535718	.	G	C	2985.12	PASS	AC=1;AF=0.563;AN=2;DP=546;set=variant3-variant4-variant14-variant15-variant18-variant22-variant24-variant34	GT:AD:DP:GQ:PL:SB	0/1:36,51:87:99:1687,0,1146:4,32,9,42
chr2	32536009	.	C	A	5695.94	PASS	AC=1;AF=0.5;AN=2;DP=507;FS=2.454;FractionInformativeReads=0.994;MQ=60;MQRankSum=2.511;QD=11.23;ReadPosRankSum=-0.675;SOR=0.879;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:258,246:504:99:5724,0,6047:139,119,143,103
chr2	32617052	.	G	A	458.05	PASS	AC=1;AF=0.5;AN=2;DP=291;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant18-variant22-variant24-variant34	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:589,0,852:22,5,17,6
chr2	32655873	.	CTT	CT,C,CTTT	146.79	PASS	AC=0,0,1;AF=0.261,0.065,0.196;AN=2;DP=492;set=variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant15-filterInvariant21-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant40-variant44	GT:DP:GQ:SB	0/3:22:99:9,2,8,3
chr2	32666411	.	T	C	345.47	PASS	AC=1;AF=0.5;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant18-variant22-variant24-variant29-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:387,0,508:13,8,9,5
chr2	32667058	.	C	A	286.77	PASS	AC=2;AF=1;AN=2;DP=563;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:1080,72,0:0,0,16,8
chr2	32667061	.	T	A	323.52	PASS	AC=2;AF=1;AN=2;DP=604;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1117,75,0:0,0,17,8
chr2	32667182	.	G	C	2669.71	PASS	AC=2;AF=1;AN=2;DP=3244;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2385,230,0:0,0,42,35
chr2	32690253	.	ATT	A,AT	111.14	PASS	AC=0,1;AF=0.104,0.396;AN=2;DP=905;MQ=60;set=variant3-variant5-filterInvariant8-variant9-filterInvariant10-variant11-variant12-filterInvariant15-filterInvariant16-variant20-filterInvariant21-filterInvariant22-variant26-filterInvariant27-filterInvariant28-variant30-filterInvariant31-variant33-filterInvariant34-filterInvariant35-variant36-variant37-variant39-variant43	GT:DP:GQ:SB	0/2:21:99:4,8,2,7
chr2	32706579	.	T	A	792.48	PASS	AC=2;AF=1;AN=2;DP=922;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:829,69,0:0,0,5,18
chr2	32712875	.	A	C	2806.33	PASS	AC=2;AF=1;AN=2;DP=3347;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2570,234,0:0,0,23,55
chr2	32713706	.	A	T	594.62	PASS	AC=2;AF=0.667;AN=2;DP=1903;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:1929,203,0:0,0,36,32
chr2	32733343	.	CTTTTTTTTTTT	CTTTTTTT,CTTTTTTTTT,CTTTTTTTTTTTTTT,CTTTTTTTTTTTTT,CTTTTTT,CTTTTT,CT,C,CTTTTTTTTTTTT,CTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTT,CTTTTTTTT	383.5	PASS	AC=0,0,0,0,0,1,0,0,0,0,0,0;AF=0.074,0.111,0.037,0.037,0.056,0.13,0.019,0.037,0.019,0.019,0.037,0.019;AN=2;DP=1294;set=variant-variant2-variant3-variant6-variant9-variant12-variant14-variant15-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant26-variant27-variant29-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42	GT:DP:GQ:SB	0/6:19:99:4,5,0,10
chr2	32735881	.	A	G	481.92	PASS	AC=1;AF=0.614;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant12-variant14-variant15-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant31-variant32-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:266,0,193:0,5,1,6
chr2	32749880	.	C	T	376.77	PASS	AC=2;AF=1;AN=2;DP=406;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:84:1260,84,0:0,0,21,4
chr2	32749890	.	C	T	511.77	PASS	AC=2;AF=1;AN=2;DP=495;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1439,96,0:0,0,26,6
chr2	32749893	.	A	T	511.77	PASS	AC=2;AF=1;AN=2;DP=524;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1508,102,0:0,0,26,6
chr2	32749903	.	T	C	661.7	PASS	AC=2;AF=1;AN=2;DP=649;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1666,117,0:0,0,29,10
chr2	32757201	.	C	CGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGTGT,CGTGTGTGTGTGTGTGTGT,CGTGTGT	367.38	PASS	AC=0,0,2,0,0,0,0;AF=0.162,0.122,0.27,0.203,0.054,0.108,0.014;AN=2;DP=401;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	3/3:7:21:0,0,6,1
chr2	32822957	.	G	A	364.01	PASS	AC=1;AF=0.565;AN=2;DP=1441;MQ=60;set=variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant26-variant27-variant28-variant30-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:804,0,940:16,21,14,15
chr2	32832683	.	C	T	1081.08	PASS	AC=1;AF=0.5;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant22-variant24	GT:AD:DP:GQ:PL:SB	0/1:51,49:100:99:1150,0,1283:22,29,21,28
chr2	32843295	.	AT	A	1460.34	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=4.914;FractionInformativeReads=0.899;MQ=60;MQRankSum=-0.813;QD=12.27;ReadPosRankSum=0.545;SOR=1.02;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:42,65:107:99:1498,0,877:20,22,38,27
chr2	32855615	.	A	G	8927.36	PASS	AC=2;AF=0.989;AN=2;DP=10208;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,338:338:99:10244,1014,0:0,0,175,163
chr2	32860415	.	C	T	1772.7	PASS	AC=2;AF=0.955;AN=2;DP=2732;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2091,221,0:0,0,37,37
chr2	32928119	.	A	G	846.34	PASS	AC=1;AF=0.55;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant14-variant15-variant17-variant29-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,32:50:99:1012,0,464:5,13,7,25
chr2	32961745	.	T	A	4388.88	PASS	AC=2;AF=0.989;AN=2;DP=5620;MQ=60;MQRankSum=-0.479;ReadPosRankSum=0.241;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4676,455,0:0,0,95,57
chr2	32961858	.	A	G	2055.34	PASS	AC=1;AF=0.5;AN=2;DP=2046;MQ=60;set=variant2-variant6-variant7-variant8-variant15-variant17-variant26-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,116:232:99:2838,0,3018:55,61,59,57
chr2	32962066	.	T	C	275.15	PASS	AC=1;AF=0.633;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant18-variant19-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:185,0,156:0,4,0,5
chr2	32991453	.	T	C	589.94	PASS	AC=1;AF=0.542;AN=2;DP=518;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant15-variant17-variant27-variant32-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:840,0,734:15,17,16,14
chr2	33007817	.	T	C	437.7	PASS	AC=1;AF=0.5;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:391,0,517:5,13,3,11
chr2	33173660	.	TG	T	1019.06	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0.906;FractionInformativeReads=1;MQ=60;MQRankSum=-2.074;QD=14.35;ReadPosRankSum=-0.56;SOR=0.523;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:1056,0,828:18,14,20,19
chr2	33174072	.	A	C	215.83	PASS	AC=2;AF=0.64;AN=2;DP=656;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant30-variant32-variant34-variant35-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,35:36:81:1127,81,0:0,1,10,25
chr2	33335508	.	C	G	888.01	PASS	AC=2;AF=0.656;AN=2;DP=1794;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1891,177,0:0,0,36,23
chr2	33359565	.	G	A	1343.09	PASS	AC=1;AF=0.5;AN=2;DP=899;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant35-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:89,88:177:99:2212,0,2162:40,49,50,38
chr2	33392911	.	G	A	759.09	PASS	AC=2;AF=0.722;AN=2;DP=3937;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3047,317,0:0,0,55,51
chr2	33407186	.	T	C	341.67	PASS	AC=2;AF=0.667;AN=2;DP=629;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:696,69,0:0,0,15,8
chr2	33407285	.	G	A	1181.5	PASS	AC=2;AF=0.662;AN=2;DP=3035;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3318,338,0:0,0,66,47
chr2	33412077	.	G	A	1342.93	PASS	AC=2;AF=0.667;AN=2;DP=3885;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,116:118:99:3760,304,0:1,1,43,73
chr2	33413640	.	G	T	462.36	PASS	AC=2;AF=0.662;AN=2;DP=1812;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1957,175,0:0,0,46,13
chr2	33413949	.	G	A	608.62	PASS	AC=2;AF=0.711;AN=2;DP=2109;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2177,195,0:0,0,19,46
chr2	33414009	.	T	A	416.68	PASS	AC=2;AF=0.942;AN=2;DP=946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:381,42,0:0,0,3,11
chr2	33442549	.	G	A	2445.03	PASS	AC=2;AF=0.711;AN=2;DP=2501;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1727,165,0:0,0,30,25
chr2	33447202	.	C	T	4025.89	PASS	AC=2;AF=0.679;AN=2;DP=3732;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4836,466,0:0,0,89,67
chr2	33477964	.	C	T	454.8	PASS	AC=1;AF=0.605;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant20-variant26-variant27-variant28-variant29-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:632,0,624:4,16,1,17
chr2	33488419	.	G	A	1743.17	PASS	AC=1;AF=0.625;AN=2;DP=2985;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant26-variant27-variant28-variant29-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:96,73:169:99:1659,0,2424:47,49,38,35
chr2	33500848	.	A	G	898.21	PASS	AC=1;AF=0.667;AN=2;DP=2120;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant20-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,63:129:99:1489,0,1733:39,27,36,27
chr2	33525382	.	A	C	583.48	PASS	AC=1;AF=0.75;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:445,0,365:10,1,12,1
chr2	33525407	.	A	G	627.09	PASS	AC=1;AF=0.667;AN=2;DP=936;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant19-variant20-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,34:62:99:985,0,865:22,6,25,9
chr2	33540138	.	G	A	488.83	PASS	AC=2;AF=0.769;AN=2;DP=645;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:932,75,0:0,0,21,4
chr2	33540172	.	A	AT	308.49	PASS	AC=1;AF=0.577;AN=2;DP=780;MQ=60;set=variant-variant2-variant6-variant10-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:613,0,558:15,8,18,7
chr2	33540248	.	G	A	1929.51	PASS	AC=2;AF=0.711;AN=2;DP=3237;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3185,335,0:0,0,56,56
chr2	33568113	.	A	G	978	PASS	AC=1;AF=0.556;AN=2;DP=1228;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant9-variant14-variant15-variant16-variant17-variant19-variant23-variant25-variant30-variant31-variant33-variant35-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,34:80:99:1206,0,1681:13,33,15,19
chr2	33568137	.	G	A	520.43	PASS	AC=1;AF=0.604;AN=2;DP=1171;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant24-variant25-variant30-variant31-variant33-variant35-variant36-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:1030,0,1311:9,23,11,17
chr2	33568191	.	T	C	226.11	PASS	AC=2;AF=0.73;AN=2;DP=721;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:540,45,0:0,0,3,12
chr2	33585796	.	T	C	5874.98	PASS	AC=2;AF=1;AN=2;DP=11198;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,294:294:99:8857,879,0:0,0,152,142
chr2	33585993	.	A	T	1143.18	PASS	AC=1;AF=0.5;AN=2;DP=425;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant33-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:1007,0,1145:10,29,9,27
chr2	33586464	.	C	CT,CTT	375.13	PASS	AC=1,0;AF=0.557,0.023;AN=2;DP=1732;set=Intersection	GT:DP:GQ:SB	0/1:44:99:7,3,18,16
chr2	33622448	.	T	C	636.13	PASS	AC=1;AF=0.629;AN=2;DP=1675;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1133,0,842:6,23,12,30
chr2	33622475	.	T	C	376.56	PASS	AC=1;AF=0.63;AN=2;DP=730;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant29-variant30-variant32-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:817,0,726:2,19,1,22
chr2	33623288	.	T	C	31.43	PASS	AC=2;AF=0.708;AN=2;DP=799;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1073,84,0:0,0,24,4
chr2	33623306	.	C	T	218.6	PASS	AC=2;AF=0.655;AN=2;DP=878;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1508,114,0:0,0,32,6
chr2	33623387	.	A	G	1261.16	PASS	AC=2;AF=0.775;AN=2;DP=3885;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:6614,445,0:0,0,89,58
chr2	33623388	.	T	C	1261.16	PASS	AC=2;AF=0.775;AN=2;DP=3924;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:6614,445,0:0,0,90,58
chr2	33623734	.	A	G	2200.24	PASS	AC=2;AF=0.775;AN=2;DP=6731;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6713,624,0:0,0,127,81
chr2	33623851	.	A	G	2510.36	PASS	AC=1;AF=0.5;AN=2;DP=1491;MQ=60;set=variant7-variant15-variant16-variant33-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,149:284:99:3685,0,3292:64,71,68,81
chr2	33624279	.	G	A	3761.42	PASS	AC=1;AF=0.5;AN=2;DP=1801;MQ=60;set=variant7-variant15-variant16-variant33-variant35-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,159:340:99:3802,0,4488:85,96,74,85
chr2	33643740	.	T	G	275.02	PASS	AC=2;AF=0.559;AN=2;DP=1825;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-filterInvariant38-filterInvariant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,37:41:32:789,32,0:1,3,13,24
chr2	33701410	.	C	T	427.39	PASS	AC=2;AF=0.68;AN=2;DP=682;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1176,114,0:0,0,21,17
chr2	33701632	.	C	T	701.22	PASS	AC=1;AF=0.5;AN=2;DP=427;MQ=60;set=variant-variant4-variant9-variant13-variant15-variant27-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:519,0,772:11,16,10,14
chr2	33736857	.	G	A	4239.47	PASS	AC=2;AF=0.943;AN=2;DP=10858;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,286:286:99:8391,856,0:0,0,128,158
chr2	33744958	.	C	T	137.2	PASS	AC=1;AF=0.692;AN=2;DP=1445;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:296,0,467:9,9,9,5
chr2	33745208	.	T	C	903.59	PASS	AC=1;AF=0.639;AN=2;DP=2771;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,51:103:99:1088,0,1179:23,29,22,29
chr2	33745336	.	T	C	401.26	PASS	AC=1;AF=0.779;AN=2;DP=769;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:282,0,307:5,5,6,2
chr2	33745402	.	A	G	517.45	PASS	AC=1;AF=0.6;AN=2;DP=795;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:364,0,542:15,4,9,6
chr2	33748913	.	A	G	777.23	PASS	AC=1;AF=0.577;AN=2;DP=645;MQ=60;set=variant3-variant11-variant12-variant14-variant15-variant22-variant25-variant28-variant32-variant34-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:1016,0,882:23,6,24,9
chr2	33752152	.	G	T	727.17	PASS	AC=1;AF=0.583;AN=2;DP=468;MQ=60;set=variant3-variant11-variant12-variant14-variant15-variant22-variant25-variant28-variant32-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:354,0,536:11,9,10,5
chr2	33759395	.	C	T	364.15	PASS	AC=1;AF=0.556;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant22-variant25-variant32-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:722,0,641:16,9,17,15
chr2	33759563	.	G	A	346.34	PASS	AC=1;AF=0.556;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant22-variant25-variant32-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:643,0,727:10,19,11,17
chr2	33783593	.	G	T	189.04	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=7.282;FractionInformativeReads=1;MQ=60;MQRankSum=-1.068;QD=8.59;ReadPosRankSum=-0.735;SOR=0.452;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:217,0,451:10,3,4,5
chr2	33787976	.	CCTAA	C	8913.87	PASS	AC=2;AF=0.955;AN=2;DP=7956;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:8229,551,0:0,0,99,84
chr2	33788060	.	CTT	C	12404.8	PASS	AC=1;AF=0.779;AN=2;DP=10433;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,153:275:99:5652,0,4349:60,62,78,75
chr2	33788105	.	A	G	2424.83	PASS	AC=1;AF=0.556;AN=2;DP=1991;MQ=60;set=variant9-variant11-variant12-variant14-variant15-variant25-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,154:282:99:3711,0,2991:61,67,69,85
chr2	33788156	.	C	T	2939.85	PASS	AC=1;AF=0.523;AN=2;DP=4101;MQ=60;set=variant-variant4-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant23-variant25-variant27-variant28-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,122:228:99:3304,0,2634:47,59,50,72
chr2	33788270	.	CTTGTT	C	7850.65	PASS	AC=1;AF=0.775;AN=2;DP=8068;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,98:206:99:2199,0,4809:54,54,55,43
chr2	33788537	.	A	ATACT	1776.4	PASS	AC=1;AF=0.556;AN=2;DP=820;MQ=60;set=variant9-variant11-variant12-variant14-variant15-variant25-variant34-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,50:118:99:1950,0,3145:35,33,28,22
chr2	33809294	.	A	G	7915.31	PASS	AC=2;AF=0.81;AN=2;DP=10215;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,270:271:99:9102,803,0:1,0,112,158
chr2	33952022	.	C	A	72.28	PASS	AC=2;AF=0.8;AN=2;DP=560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:406,33,0:0,0,9,2
chr2	33952055	.	C	G	121.69	PASS	AC=1;AF=0.7;AN=2;DP=876;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:333,0,302:9,0,8,2
chr2	33952413	.	T	C	2220.97	PASS	AC=2;AF=0.779;AN=2;DP=9472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,279:280:99:8565,811,0:1,0,152,127
chr2	33952456	.	C	G	5937.4	PASS	AC=2;AF=1;AN=2;DP=10894;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,317:317:99:9924,951,0:0,0,160,157
chr2	33952621	.	G	A	5438.6	PASS	AC=1;AF=0.578;AN=2;DP=13690;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:237,247:484:99:6116,0,5747:131,106,144,103
chr2	35696612	.	C	T	1645.5	PASS	AC=2;AF=1;AN=2;DP=3045;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1751,182,0:0,0,26,35
chr2	36605949	.	GT	GTT,G,GGTTT,GGTTTT,GTTT,GGTT	76.18	PASS	AC=1,0,0,0,0,0;AF=0.077,0.212,0.135,0.038,0.019,0.058;AN=2;DP=1979;set=filterInvariant-filterInvariant3-filterInvariant5-variant6-variant7-variant9-variant10-filterInvariant11-variant14-filterInvariant15-filterInvariant16-variant17-filterInvariant22-variant23-filterInvariant24-filterInvariant26-variant29-variant30-variant32-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-variant42-variant43	GT:DP:GQ:SB	0/1:44:99:6,21,5,12
chr2	36704144	.	C	T	722.77	PASS	AC=1;AF=0.779;AN=2;DP=3059;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,41:90:99:965,0,1117:27,22,20,21
chr2	36739553	.	T	C	508.61	PASS	AC=2;AF=0.857;AN=2;DP=1684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1540,150,0:0,0,16,34
chr2	36740643	.	C	G	580.65	PASS	AC=1;AF=0.586;AN=2;DP=1037;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant30-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:540,0,483:12,6,13,11
chr2	36756288	.	T	C	996.81	PASS	AC=2;AF=0.849;AN=2;DP=4035;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3745,377,0:0,0,65,61
chr2	36758856	.	T	G	190.41	PASS	AC=1;AF=0.545;AN=2;DP=518;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant14-variant15-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant36-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:204,0,553:14,6,7,3
chr2	36775315	.	C	G	449.09	PASS	AC=1;AF=0.763;AN=2;DP=1348;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,31:48:99:851,0,449:13,4,20,11
chr2	36776271	.	C	G	514.75	PASS	AC=1;AF=0.58;AN=2;DP=946;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:664,0,962:17,16,16,9
chr2	36777184	.	ATGTGTGTGTGTG	ATGTGTGTGTG,A,ATGTGTGTGTGTGTG	117.7	PASS	AC=1,0,0;AF=0.333,0.056,0.111;AN=2;DP=1138;set=variant-variant2-filterInvariant3-variant5-variant8-variant9-variant13-filterInvariant15-filterInvariant21-variant27-variant28-variant29-variant33-filterInvariant35-variant37-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:55:99:23,23,7,2
chr2	36777377	.	ATT	AT,A	2564.51	PASS	AC=1,0;AF=0.432,0.114;AN=2;DP=14734;set=Intersection	GT:DP:GQ:SB	0/1:342:99:97,78,91,76
chr2	36777825	.	G	A	685.95	PASS	AC=1;AF=0.591;AN=2;DP=1663;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,35:109:99:693,0,1815:42,32,21,14
chr2	36779144	.	T	G	738.03	PASS	AC=1;AF=0.615;AN=2;DP=1590;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,26:66:99:671,0,944:25,15,19,7
chr2	36779606	.	T	TTTAAA	1867.77	PASS	AC=1;AF=0.614;AN=2;DP=2049;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,45:108:99:1709,0,3139:36,27,26,19
chr2	36779655	.	A	AACTT	2536.3	PASS	AC=1;AF=0.614;AN=2;DP=3852;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,85:220:99:3481,0,5741:83,52,49,36
chr2	36781401	.	T	C	666.44	PASS	AC=1;AF=0.63;AN=2;DP=1428;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:754,0,669:15,14,17,16
chr2	36782656	.	G	A	623.9	PASS	AC=1;AF=0.636;AN=2;DP=1149;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:595,0,909:25,6,18,2
chr2	36783127	.	T	C	481.21	PASS	AC=1;AF=0.636;AN=2;DP=831;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:536,0,326:10,4,15,8
chr2	36783215	.	C	T	859.83	PASS	AC=1;AF=0.591;AN=2;DP=1628;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:779,0,871:18,16,15,16
chr2	36805676	.	A	G	631.61	PASS	AC=1;AF=0.604;AN=2;DP=1882;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,45:109:99:1070,0,1744:41,23,29,16
chr2	36806021	.	G	A	792.73	PASS	AC=1;AF=0.604;AN=2;DP=1646;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:1043,0,1135:16,30,14,28
chr2	36806051	.	A	G	382.76	PASS	AC=1;AF=0.604;AN=2;DP=1026;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:777,0,899:10,23,6,22
chr2	36808350	.	C	T	458.89	PASS	AC=1;AF=0.625;AN=2;DP=826;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:682,0,309:9,4,17,5
chr2	36808732	.	T	G	640.55	PASS	AC=1;AF=0.769;AN=2;DP=2598;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,56:97:99:1360,0,947:21,20,24,32
chr2	36810473	.	G	T	2005.94	PASS	AC=1;AF=0.571;AN=2;DP=2841;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,84:175:99:1831,0,1983:44,47,42,42
chr2	36810586	.	T	C	569.69	PASS	AC=1;AF=0.625;AN=2;DP=1412;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:898,0,1002:10,25,11,22
chr2	36824956	.	G	GC	148.48	PASS	AC=2;AF=1;AN=2;DP=1019;FS=0;MQ=60;MQRankSum=1.22;ReadPosRankSum=1.605;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1045,84,0:0,0,17,11
chr2	36825330	.	C	CG,CGGCCCAGCCCG	645.07	PASS	AC=2,0;AF=0.92,0.068;AN=2;DP=935;MQRankSum=0.693;ReadPosRankSum=-0.945;set=Intersection	GT:DP:GQ:SB	1/1:35:99:0,0,16,19
chr2	36923778	.	CAAAA	CAAA,CAA,CAAAAAA,CA,C	83.04	PASS	AC=0,2,0,0,0;AF=0.346,0.308,0.038,0.038,0.038;AN=2;DP=81;set=variant4-variant5-variant15-variant16-variant17-variant20-variant21-variant23-variant25-variant29-variant32-variant38-variant39	GT:DP:GQ:SB	2/2:5:15:0,0,5,0
chr2	36923898	.	G	T	1969.37	PASS	AC=2;AF=0.989;AN=2;DP=2257;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2158,217,0:0,0,48,25
chr2	36924036	.	G	T	1886.68	PASS	AC=1;AF=0.5;AN=2;DP=193;FS=1.769;FractionInformativeReads=1;MQ=60;MQRankSum=-0.506;QD=9.78;ReadPosRankSum=0.983;SOR=0.696;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:106,87:193:99:1915,0,2706:55,51,42,45
chr2	36924177	.	C	T	1058.62	PASS	AC=2;AF=0.989;AN=2;DP=1053;FS=0;MQ=60;MQRankSum=-1.01;ReadPosRankSum=-0.818;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1188,84,0:0,0,1,27
chr2	36943338	.	C	G	508.65	PASS	AC=2;AF=0.989;AN=2;DP=1260;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.692;ReadPosRankSum=0.361;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1195,102,0:0,0,26,8
chr2	36943419	.	T	C	2814.43	PASS	AC=2;AF=0.989;AN=2;DP=4098;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3795,369,0:0,0,76,47
chr2	36965582	.	TC	T	54.12	PASS	AC=2;AF=0.705;AN=2;DP=153;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:183,15,0:0,0,0,5
chr2	36986549	.	A	G	5079.56	PASS	AC=2;AF=1;AN=2;DP=7320;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,192:193:99:6167,535,0:1,0,85,107
chr2	37000877	.	A	T	204.17	PASS	AC=1;AF=0.625;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant12-variant14-variant15-variant17-variant22-variant25-variant27-variant28-variant31-variant35-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:37:66,0,37:1,1,2,0
chr2	37001570	.	C	T	1738.09	PASS	AC=2;AF=0.977;AN=2;DP=1685;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1662,153,0:0,0,16,35
chr2	37010574	.	G	A	1494.5	PASS	AC=1;AF=0.808;AN=2;DP=5138;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,80:157:99:1754,0,1877:39,38,42,38
chr2	37072266	.	C	G	8607.69	PASS	AC=2;AF=0.919;AN=2;DP=11870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,324:324:99:9917,970,0:0,0,171,153
chr2	37073027	.	AACACACACACACACACACACACGCATGCATGCACACACAC	AACACACACACACACACACACGCATGCATGCACACACAC,AACACACAC,AACACACACACACACACACGCATGCATGCACACACAC,A,AACACAC	97.04	PASS	AC=1,0,0,0,1;AF=0.662,0.088,0.015,0.029,0.059;AN=2;DP=410;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant42-variant44	GT:DP:GQ:SB	5/1:16:99:0,0,8,8
chr2	37073058	.	GCACACACACACA	GCACACA,G,GCACA,GCACACACA,GCA	216.31	PASS	AC=1,0,0,0,0;AF=0.604,0.083,0.063,0.042,0.021;AN=2;DP=243;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant21-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant44	GT:DP:GQ:SB	0/1:13:99:4,4,2,3
chr2	37073172	.	AT	ATT,A	230.62	PASS	AC=2,0;AF=0.91,0.013;AN=2;DP=520;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:15:45:0,0,9,6
chr2	37073809	.	T	C	12371.9	PASS	AC=2;AF=0.989;AN=2;DP=17416;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,463:463:99:13257,1385,0:0,0,230,233
chr2	37074951	.	G	A	12707.1	PASS	AC=2;AF=0.919;AN=2;DP=18839;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,558:559:99:16520,1661,0:0,1,226,332
chr2	37075013	.	T	A	3026.06	PASS	AC=1;AF=0.654;AN=2;DP=5569;set=variant-variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:144,152:296:99:3919,0,3813:49,95,53,99
chr2	37075397	.	T	G	6727.2	PASS	AC=2;AF=0.919;AN=2;DP=7614;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:7368,717,0:0,0,139,100
chr2	37077015	.	C	A	193.47	PASS	AC=2;AF=1;AN=2;DP=541;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:638,54,0:0,0,3,15
chr2	37078095	.	A	ATT,AT	252.89	PASS	AC=1,1;AF=0.378,0.451;AN=2;DP=590;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:23:99:2,2,13,6
chr2	37094945	.	A	G	1880.62	PASS	AC=2;AF=0.966;AN=2;DP=2637;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2766,270,0:0,0,50,40
chr2	37095139	.	G	C	105.42	PASS	AC=1;AF=0.685;AN=2;DP=375;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:382,0,354:3,9,1,10
chr2	37096970	.	C	T	328.4	PASS	AC=2;AF=0.939;AN=2;DP=322;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:285,21,0:0,0,0,7
chr2	37111045	.	T	A	592.47	PASS	AC=1;AF=0.688;AN=2;DP=1194;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:664,0,420:11,9,18,3
chr2	37129618	.	A	ATAAT	131.34	PASS	AC=2;AF=1;AN=2;DP=70;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,4,0
chr2	37234480	.	CTTTT	CTTTTTTT,CT,CTTTTT,C,CTT,CTTTTTT	69.23	PASS	AC=0,0,0,0,1,0;AF=0.083,0.083,0.083,0.167,0.125,0.042;AN=2;DP=257;set=variant-variant2-variant7-variant9-variant11-variant13-variant15-variant19-filterInvariant29-variant36-variant37-variant41	GT:DP:GQ:SB	0/5:13:97:3,5,0,5
chr2	37241050	.	G	A	737.67	PASS	AC=1;AF=0.5;AN=2;DP=1205;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant17-variant32-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,59:106:99:1441,0,1073:22,25,24,35
chr2	37248015	.	T	C	190.45	PASS	AC=1;AF=0.536;AN=2;DP=282;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant17-variant32-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:99:123,0,353:6,9,2,2
chr2	37255015	.	G	A	121.07	PASS	AC=1;AF=0.706;AN=2;DP=738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:445,0,465:13,6,12,4
chr2	37260027	.	G	GT	43.38	PASS	AC=1;AF=0.583;AN=2;DP=84;set=variant5-variant6-variant15-variant16-variant24-variant27	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:28:132,0,28:0,2,0,6
chr2	37267428	.	C	G	820.34	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:1028,0,866:22,11,26,9
chr2	37276993	.	TAAA	TAA,TAAAA,TAAAAA,T,TA	56.7	PASS	AC=0,0,0,1,0;AF=0.367,0.033,0.067,0.033,0.067;AN=2;DP=370;set=filterInvariant-variant5-variant8-variant9-variant12-variant13-variant15-variant17-variant21-filterInvariant23-filterInvariant28-variant30-filterInvariant32-variant41-filterInvariant44	GT:DP:GQ:SB	0/4:11:8:0,1,3,7
chr2	37282421	.	GTTAT	G	52.73	PASS	AC=1;AF=0.75;AN=2;DP=6;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=-0.736;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:53:81,0,53:0,1,0,2
chr2	37285528	.	ACT	A	748.56	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:433,0,599:11,4,8,4
chr2	37285840	.	T	C	130.48	PASS	AC=1;AF=0.5;AN=2;DP=35;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:408,0,178:0,5,3,9
chr2	37287683	.	T	A	677.39	PASS	AC=1;AF=0.5;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:915,0,866:21,12,23,10
chr2	37292890	.	T	G	1109.12	PASS	AC=1;AF=0.523;AN=2;DP=1600;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant29-variant30-variant31-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,50:96:99:1331,0,1057:24,22,31,19
chr2	37295877	.	A	G	1239.07	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=2.43;FractionInformativeReads=1;MQ=60;MQRankSum=-0.104;QD=10.77;ReadPosRankSum=-1.34;SOR=0.962;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:65,50:115:99:1267,0,1562:35,30,30,20
chr2	37296092	.	A	G	947.66	PASS	AC=1;AF=0.5;AN=2;DP=186;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:45,71:116:99:1711,0,1139:17,28,28,43
chr2	37297285	.	T	C	423.28	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:373,0,383:10,5,11,0
chr2	37297306	.	A	G	425.56	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:451,0,542:12,8,13,1
chr2	37297329	.	C	G	862.41	PASS	AC=1;AF=0.523;AN=2;DP=1046;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant29-variant30-variant31-variant35-variant36-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:876,0,540:16,6,19,16
chr2	37299145	.	G	A	559.62	PASS	AC=2;AF=0.583;AN=2;DP=889;FractionInformativeReads=1;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant27-variant29-variant30-variant31-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1778,141,0:0,0,39,8
chr2	37302556	.	GA	G	910.68	PASS	AC=2;AF=0.989;AN=2;DP=1688;MQ=60;MQRankSum=0.161;ReadPosRankSum=-0.023;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1260,126,0:0,0,29,13
chr2	37306151	.	G	A	1061.39	PASS	AC=1;AF=0.528;AN=2;DP=1265;set=variant4-variant5-variant7-variant11-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant29-variant30-variant31-variant35-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,46:91:99:1018,0,1058:24,21,23,23
chr2	37306340	.	T	C	309.96	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:719,0,630:9,14,13,13
chr2	37306343	.	G	A	1638.48	PASS	AC=2;AF=0.989;AN=2;DP=2258;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1971,153,0:0,0,22,28
chr2	37310651	.	C	T	115.92	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:139,0,155:0,4,0,4
chr2	37311339	.	T	C	319.98	PASS	AC=1;AF=0.5;AN=2;DP=149;MQ=60;set=variant10-variant12-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:199,0,488:14,3,7,2
chr2	37311415	.	G	C	1100.75	PASS	AC=1;AF=0.5;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:708,0,911:20,11,18,9
chr2	37316717	.	TAA	TAAA,T	43.77	PASS	AC=0,1;AF=0.167,0.333;AN=2;DP=45;MQ=60;set=variant2-variant12-variant15	GT:DP:GQ:SB	0/2:13:55:2,1,9,1
chr2	37317063	.	T	A	484.17	PASS	AC=1;AF=0.5;AN=2;DP=91;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:23,33:56:99:790,0,665:7,16,13,20
chr2	37317162	.	G	A	128.13	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:190,0,191:2,5,3,5
chr2	37317869	.	C	T	1573.73	PASS	AC=2;AF=0.989;AN=2;DP=2152;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1458,141,0:0,0,23,24
chr2	37319156	.	A	C	776.81	PASS	AC=1;AF=0.5;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:62,58:120:99:1499,0,1678:29,33,32,26
chr2	37319223	.	T	C	907.33	PASS	AC=1;AF=0.5;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:70,67:137:99:1682,0,1649:33,37,34,33
chr2	37321568	.	G	T	246.34	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:490,0,494:9,11,5,13
chr2	37324096	.	T	TC	6232.56	PASS	AC=1;AF=0.966;AN=2;DP=9025;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:159,112:271:99:2842,0,4372:97,62,66,46
chr2	37324388	.	C	G	4587.95	PASS	AC=1;AF=0.5;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:288,249:537:99:6028,0,7334:119,169,96,153
chr2	37325108	.	T	C	484.08	PASS	AC=1;AF=0.686;AN=2;DP=679;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:360,0,212:1,6,4,9
chr2	37325512	.	TAG	T,GAG	439.49	PASS	AC=1,0;AF=0.6,0.3;AN=2;DP=145;MQ=60;set=variant11-variant12-variant15-variant29-variant42	GT:DP:GQ:SB	0/1:24:99:15,4,5,0
chr2	37325516	.	G	T	68.65	PASS	AC=1;AF=0.5;AN=2;DP=60;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,5:24:97:97,0,781:15,4,5,0
chr2	37327151	.	C	T	237.75	PASS	AC=1;AF=0.5;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:498,0,450:10,8,10,8
chr2	37327684	.	A	C	12726.2	PASS	AC=1;AF=0.821;AN=2;DP=15464;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:226,218:444:99:5087,0,5482:104,122,94,124
chr2	37328362	.	G	T	11472.9	PASS	AC=2;AF=0.989;AN=2;DP=12368;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,331:331:99:10349,992,0:0,0,187,144
chr2	37328601	.	T	G	4756.45	PASS	AC=1;AF=0.5;AN=2;DP=885;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:237,276:513:99:6849,0,5534:108,129,130,146
chr2	37329049	.	C	A	3077.4	PASS	AC=1;AF=0.531;AN=2;DP=3117;MQ=60;set=variant4-variant5-variant7-variant11-variant15-variant16-variant17-variant19-variant21-variant25-variant29-variant30-variant31-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:137,104:241:99:2359,0,3508:65,72,51,53
chr2	37329534	.	A	C	11878.6	PASS	AC=1;AF=0.966;AN=2;DP=16627;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:224,220:444:99:5330,0,5980:106,118,106,114
chr2	37329781	.	C	T	1728.23	PASS	AC=1;AF=0.5;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:127,98:225:99:2636,0,3346:54,73,38,60
chr2	37330146	.	CTG	CTGTGTG,CTGTGTGTG,C	3548.29	PASS	AC=0,0,1;AF=0.426,0.13,0.056;AN=2;DP=3669;set=variant2-variant3-variant4-filterInvariant5-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant43-variant44	GT:DP:GQ:SB	0/3:136:99:34,34,35,33
chr2	37330559	.	G	A	49.69	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;QD=7.1;ReadPosRankSum=-1.754;SOR=0.368;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:78,0,74:1,2,2,2
chr2	37331310	.	TAAAAC	T	4710.81	PASS	AC=1;AF=0.5;AN=2;DP=544;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:171,143:314:99:5162,0,9926:106,65,95,48
chr2	37331841	.	C	T	2065.99	PASS	AC=1;AF=0.5;AN=2;DP=694;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:222,148:370:99:2719,0,4677:112,110,83,65
chr2	37333711	.	CT	CTT,C	427.69	PASS	AC=0,1;AF=0.293,0.207;AN=2;DP=11656;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-variant24-variant25-filterInvariant26-filterInvariant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:305:99:74,114,47,70
chr2	37334185	.	T	TA,TAA	163.12	PASS	AC=2,0;AF=0.881,0.012;AN=2;DP=355;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:7:26:0,0,6,1
chr2	37336059	.	A	G	175.41	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:262,0,145:3,2,5,4
chr2	37342456	.	T	C	247.45	PASS	AC=2;AF=0.977;AN=2;DP=1411;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:728,81,0:0,0,15,12
chr2	37365251	.	CAA	C	59.74	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;QD=8.53;ReadPosRankSum=-0.922;SOR=0.18;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:23:56,0,23:2,0,3,2
chr2	37365798	.	A	G	614.42	PASS	AC=1;AF=0.5;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:1106,0,1824:7,22,9,22
chr2	37365809	.	C	G	899.72	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.596;QD=17.99;ReadPosRankSum=0.74;SOR=0.701;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:928,0,1798:6,21,5,18
chr2	37366688	.	T	C	748.08	PASS	AC=1;AF=0.5;AN=2;DP=150;FractionInformativeReads=1;MQ=60;set=variant9-variant15	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:999,0,750:21,11,25,14
chr2	37368567	.	C	A	301.32	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.848;QD=12.56;ReadPosRankSum=-1.431;SOR=1.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:330,0,555:14,1,9,0
chr2	37373897	.	G	C	587.84	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=4.157;FractionInformativeReads=1;MQ=60;MQRankSum=1.802;QD=10.89;ReadPosRankSum=-0.496;SOR=1.493;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:616,0,736:18,12,18,6
chr2	37373982	.	A	AT	5011.96	PASS	AC=2;AF=0.977;AN=2;DP=4178;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:4340,328,0:0,0,56,53
chr2	37374772	.	C	T	543.75	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=2.189;FractionInformativeReads=1;MQ=60;MQRankSum=0.293;QD=15.99;ReadPosRankSum=-0.5;SOR=0.223;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:572,0,502:15,1,15,3
chr2	37375932	.	G	A	2723.23	PASS	AC=2;AF=0.641;AN=2;DP=2508;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3537,338,0:0,0,64,49
chr2	37376247	.	T	C	1363.66	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.361;QD=11.66;ReadPosRankSum=1.486;SOR=0.746;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:60,57:117:99:1392,0,1503:35,25,34,23
chr2	37376291	.	G	A	3613.16	PASS	AC=1;AF=0.591;AN=2;DP=4476;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,89:169:99:1918,0,1866:47,33,47,42
chr2	37384053	.	GCGCCGCCGCCGC	GCGCCGCCGCCGCCGC,G,GCGC	1215.73	PASS	AC=0,0,1;AF=0.222,0.056,0.278;AN=2;DP=561;set=variant12-variant14-variant15-variant22-variant24-variant27-variant29-variant30-variant41	GT:DP:GQ:SB	0/3:71:99:18,20,17,16
chr2	37384283	.	A	G	681.13	PASS	AC=2;AF=0.641;AN=2;DP=1102;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1177,111,0:0,0,10,30
chr2	37402225	.	C	T	286.46	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=4.269;FractionInformativeReads=1;MQ=60;MQRankSum=0.634;QD=9.55;ReadPosRankSum=-1.991;SOR=1.911;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:315,0,855:14,7,8,1
chr2	37402232	.	G	C	368.57	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=1.489;FractionInformativeReads=1;MQ=60;MQRankSum=0.805;QD=11.17;ReadPosRankSum=-2.04;SOR=1.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:397,0,846:14,7,9,3
chr2	37402270	.	C	G	1453.69	PASS	AC=1;AF=0.621;AN=2;DP=1277;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,37:58:99:965,0,473:13,8,24,13
chr2	37402356	.	C	G	793.08	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.447;QD=9.44;ReadPosRankSum=1.433;SOR=0.745;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:821,0,1092:22,26,16,20
chr2	37402373	.	A	G	1744.72	PASS	AC=1;AF=0.621;AN=2;DP=1815;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,45:84:99:1035,0,835:16,23,20,25
chr2	37406644	.	A	G	872.16	PASS	AC=1;AF=0.679;AN=2;DP=1447;MQ=60;set=variant2-variant3-variant4-variant11-variant13-variant15-variant19-variant25-variant29-variant30-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,53:127:99:1143,0,1669:38,36,28,25
chr2	37406680	.	C	G	839.75	PASS	AC=1;AF=0.679;AN=2;DP=1383;MQ=60;set=variant2-variant3-variant4-variant11-variant13-variant15-variant19-variant25-variant29-variant30-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1174,0,1350:24,36,24,27
chr2	37406761	.	T	C	249.41	PASS	AC=1;AF=0.679;AN=2;DP=631;MQ=60;set=variant2-variant3-variant4-variant11-variant13-variant15-variant19-variant25-variant29-variant30-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:655,0,801:6,21,10,17
chr2	37406807	.	A	G	132.56	PASS	AC=1;AF=0.692;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant11-variant15-variant19-variant25-variant29-variant30-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:564,0,298:3,8,7,13
chr2	37410537	.	C	T	2329.48	PASS	AC=1;AF=0.706;AN=2;DP=1843;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:717,0,863:22,12,19,12
chr2	37410554	.	G	A	985.34	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0.872;FractionInformativeReads=1;MQ=60;MQRankSum=-0.103;QD=12.47;ReadPosRankSum=2.311;SOR=0.527;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1014,0,990:24,14,24,17
chr2	37410693	.	G	A	1350.84	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.81;FractionInformativeReads=1;MQ=60;MQRankSum=-1.256;QD=14.37;ReadPosRankSum=0.673;SOR=0.547;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:36,58:94:99:1379,0,847:14,22,25,33
chr2	37410805	.	G	T	552.51	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=3.183;FractionInformativeReads=1;MQ=60;MQRankSum=-1.29;QD=25.11;ReadPosRankSum=-0.7;SOR=2.093;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:581,0,113:1,5,1,15
chr2	37414431	.	A	C	2316.12	PASS	AC=1;AF=0.617;AN=2;DP=2010;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:740,0,912:22,14,20,8
chr2	37414548	.	T	C	1187.16	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0.768;FractionInformativeReads=1;MQ=60;MQRankSum=-1.24;QD=12.11;ReadPosRankSum=-0.586;SOR=0.556;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,48:98:99:1215,0,1214:20,30,21,27
chr2	37414586	.	A	T	862.31	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0.861;FractionInformativeReads=1;MQ=60;MQRankSum=0.375;QD=10.52;ReadPosRankSum=0.544;SOR=0.525;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:47,35:82:99:891,0,1208:18,29,15,20
chr2	37415496	.	G	C	1457.72	PASS	AC=1;AF=0.81;AN=2;DP=1575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:543,0,590:16,5,14,8
chr2	37415603	.	C	T	1537.54	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=2.211;FractionInformativeReads=1;MQ=60;MQRankSum=-0.154;QD=11.74;ReadPosRankSum=3.528;SOR=0.505;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1566,0,1601:36,29,33,33
chr2	37425629	.	A	G	292.45	PASS	AC=1;AF=0.609;AN=2;DP=818;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:268,0,291:7,3,7,5
chr2	37428743	.	C	T	3911.16	PASS	AC=2;AF=0.786;AN=2;DP=4678;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3889,377,0:0,0,73,53
chr2	37429352	.	T	TA	4529.41	PASS	AC=1;AF=0.5;AN=2;DP=380;FS=4.737;FractionInformativeReads=0.926;MQ=60;MQRankSum=1.432;QD=11.92;ReadPosRankSum=1.438;SOR=0.853;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:159,193:352:99:4567,0,3715:81,78,88,105
chr2	37431273	.	T	G	1056.4	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=4.781;FractionInformativeReads=0.93;MQ=60;MQRankSum=-2.623;QD=8.25;ReadPosRankSum=1.232;SOR=1.217;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1085,0,1853:27,41,15,36
chr2	37431420	.	ATTT	ATT,AT,A	111.29	PASS	AC=0,1,0;AF=0.4,0.233,0.033;AN=2;DP=210;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant17-variant31-variant35-variant40-variant42	GT:DP:GQ:SB	0/2:5:16:0,1,0,4
chr2	37431640	.	TG	T	592.73	PASS	AC=1;AF=0.606;AN=2;DP=583;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:519,0,667:8,1,10,3
chr2	37431646	.	C	G	638.22	PASS	AC=1;AF=0.606;AN=2;DP=640;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:553,0,664:8,1,11,3
chr2	37438274	.	T	C	522.86	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant5-variant14-variant15-variant31-variant35	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:321,0,483:4,14,7,9
chr2	37438993	.	G	A	1694.48	PASS	AC=1;AF=0.621;AN=2;DP=1501;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,44:72:99:1216,0,577:17,11,30,14
chr2	37439334	.	C	G	467.51	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.68;QD=16.12;ReadPosRankSum=-0.458;SOR=1.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:496,0,531:12,3,12,2
chr2	37447471	.	AATATAT	AAT,A	268.83	PASS	AC=2,0;AF=0.571,0.429;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant19-variant26-variant27-variant37-variant38	GT:DP:GQ:SB	1/1:4:12:0,0,2,2
chr2	37456032	.	C	T	4529.06	PASS	AC=2;AF=0.955;AN=2;DP=4956;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4866,459,0:0,0,91,62
chr2	37458711	.	G	A	1803.5	PASS	AC=1;AF=0.617;AN=2;DP=4641;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,98:170:99:2457,0,1711:35,37,42,56
chr2	37458811	.	CA	C	2140.79	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=0;FractionInformativeReads=0.992;MQ=60;MQRankSum=-1.539;QD=16.72;ReadPosRankSum=0.172;SOR=0.721;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:70,57:127:99:2178,0,4096:30,40,24,33
chr2	37458813	.	G	C	2149.78	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.909;QD=17.06;ReadPosRankSum=-0.587;SOR=0.669;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:67,59:126:99:2178,0,4096:28,39,25,34
chr2	37465055	.	T	G	649.59	PASS	AC=1;AF=0.5;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:678,0,628:7,16,9,16
chr2	37474341	.	C	T	346.99	PASS	AC=1;AF=0.5;AN=2;DP=32;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:375,0,384:9,3,10,5
chr2	37475976	.	G	C	907.08	PASS	AC=1;AF=0.694;AN=2;DP=768;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:312,0,610:16,0,8,1
chr2	37476024	.	T	G	1021.55	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,36:58:99:1050,0,564:16,6,25,11
chr2	37476057	.	C	CA	2089.39	PASS	AC=1;AF=0.689;AN=2;DP=2817;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:932,0,1246:33,22,27,14
chr2	37477652	.	G	T	284.55	PASS	AC=1;AF=0.5;AN=2;DP=41;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:313,0,389:10,3,8,3
chr2	37477794	.	C	A	5605.71	PASS	AC=2;AF=0.78;AN=2;DP=6379;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5322,548,0:0,0,95,88
chr2	37478005	.	C	T	3453.33	PASS	AC=1;AF=0.5;AN=2;DP=530;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:182,153:335:99:3482,0,4558:107,75,87,66
chr2	37478347	.	A	T	2097.17	PASS	AC=1;AF=0.5;AN=2;DP=218;FS=0;FractionInformativeReads=0.936;MQ=60;MQRankSum=-1.366;QD=9.62;ReadPosRankSum=3.264;SOR=0.73;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:101,103:204:99:2125,0,2732:47,54,47,56
chr2	37479756	.	C	T	7229.12	PASS	AC=1;AF=0.6;AN=2;DP=6037;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:138,121:259:99:3043,0,3490:71,67,65,56
chr2	37479862	.	C	T	7830.01	PASS	AC=2;AF=0.78;AN=2;DP=9145;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:6930,735,0:0,0,101,145
chr2	37479959	.	A	C	2175.84	PASS	AC=2;AF=0.78;AN=2;DP=2148;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2090,179,0:0,0,13,47
chr2	37479984	.	T	A	100.46	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.398;QD=9.13;ReadPosRankSum=-1.246;SOR=0.33;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:129,0,269:0,7,0,4
chr2	37480133	.	AC	A	8012.46	PASS	AC=1;AF=0.5;AN=2;DP=783;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:213,233:446:99:8050,0,7232:133,80,139,94
chr2	37480249	.	A	G	12743.7	PASS	AC=1;AF=0.583;AN=2;DP=8582;MQ=60;set=variant-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:184,192:376:99:4848,0,4706:78,106,83,109
chr2	37480564	.	G	GT	266.47	PASS	AC=1;AF=0.5;AN=2;DP=117;MQ=60;set=variant15-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:304,0,167:1,7,1,12
chr2	37487341	.	TA	T	427.39	PASS	AC=1;AF=0.5;AN=2;DP=70;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:465,0,314:12,3,14,7
chr2	37487570	.	AAC	A	691.33	PASS	AC=1;AF=0.5;AN=2;DP=70;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:729,0,962:6,17,4,15
chr2	37499289	.	T	C	306.24	PASS	AC=2;AF=0.696;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant38-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:93,9,0:0,0,3,0
chr2	37501547	.	A	G	418.33	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:447,0,560:14,5,12,4
chr2	37505105	.	T	G	2850.37	PASS	AC=1;AF=0.5;AN=2;DP=2186;MQ=60;set=variant3-variant13-variant15-variant18-variant24-variant30-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,126:210:99:3186,0,1842:35,49,48,78
chr2	37516481	.	T	C	861.04	PASS	AC=1;AF=0.5;AN=2;DP=733;MQ=60;set=variant3-variant13-variant15-variant18-variant24-variant30-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:791,0,1132:29,14,21,13
chr2	37518045	.	G	C	4231.07	PASS	AC=1;AF=0.6;AN=2;DP=4397;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:1744,0,1692:38,32,38,35
chr2	37543371	.	A	G	3048.99	PASS	AC=1;AF=0.609;AN=2;DP=1371;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant13-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:1205,0,807:22,8,31,9
chr2	37543593	.	A	G	3439.53	PASS	AC=1;AF=0.5;AN=2;DP=446;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:136,143:279:99:3468,0,3694:70,66,72,71
chr2	37544319	.	T	C	3539.05	PASS	AC=1;AF=0.5;AN=2;DP=984;MQ=60;set=variant15-variant24-variant30-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:120,130:250:99:3567,0,3338:34,86,36,94
chr2	37545203	.	T	G	370.77	PASS	AC=1;AF=0.589;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:212,0,434:0,11,0,6
chr2	37571697	.	G	C	1196.5	PASS	AC=1;AF=0.5;AN=2;DP=125;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,47:72:99:1225,0,576:15,10,30,17
chr2	37571752	.	G	A	2637.77	PASS	AC=2;AF=1;AN=2;DP=4691;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3471,341,0:0,0,71,44
chr2	37579937	.	C	T	956.19	PASS	AC=1;AF=0.5;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant18-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,35:77:99:924,0,1125:28,14,25,10
chr2	37586681	.	A	G	738.87	PASS	AC=1;AF=0.64;AN=2;DP=865;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant13-variant15-variant16-variant18-variant20-variant21-variant24-variant26-variant27-variant29-variant30-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:454,0,828:20,9,13,4
chr2	37594316	.	A	G	731.01	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:759,0,640:18,8,16,12
chr2	37594594	.	G	A	362.39	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:52:391,0,52:0,2,1,10
chr2	37595696	.	A	C	4563.79	PASS	AC=1;AF=0.636;AN=2;DP=2895;MQ=60;set=variant3-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,89:151:99:2298,0,1650:36,26,45,44
chr2	37600292	.	C	A	11926.6	PASS	AC=2;AF=0.955;AN=2;DP=17208;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,449:449:99:13219,1342,0:0,0,222,227
chr2	37600427	.	A	G	1719.03	PASS	AC=1;AF=0.55;AN=2;DP=1082;MQ=60;set=variant3-variant7-variant13-variant15-variant18-variant26-variant32-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,74:152:99:1853,0,2114:23,55,23,51
chr2	37869039	.	AT	A,ATT	2376.33	PASS	AC=0,1;AF=0.474,0.105;AN=2;DP=5261;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant13-variant15-variant18-variant21-variant22-variant25-variant26-variant29-variant35-variant36-variant37-variant38-variant39-variant42	GT:DP:GQ:SB	0/2:264:99:68,46,83,67
chr2	37871766	.	TAA	TA,T	823.93	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=8893;set=Intersection	GT:DP:GQ:SB	0/1:180:99:63,50,38,29
chr2	37898910	.	A	G	472.98	PASS	AC=1;AF=0.5;AN=2;DP=558;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:438,0,385:6,8,9,6
chr2	37898959	.	C	T	328.6	PASS	AC=1;AF=0.525;AN=2;DP=564;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,23:34:99:921,0,435:6,5,13,10
chr2	37898963	.	CG	CAG,CGGG,C	682.73	PASS	AC=2,0,0;AF=0.864,0.068,0.011;AN=2;DP=1169;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:34:99:0,0,20,14
chr2	37898964	.	G	GC	316.56	PASS	AC=1;AF=0.525;AN=2;DP=583;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:888,0,438:7,5,13,9
chr2	37898965	.	G	GGGT	263.23	PASS	AC=1;AF=0.737;AN=2;DP=1015;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:438,0,888:13,8,7,5
chr2	37899310	.	A	G	357.16	PASS	AC=1;AF=0.718;AN=2;DP=2641;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,27:72:99:630,0,944:19,26,9,18
chr2	37899418	.	A	G	377.44	PASS	AC=2;AF=0.939;AN=2;DP=537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:216,18,0:0,0,2,4
chr2	38152509	.	G	C	1411.82	PASS	AC=1;AF=0.614;AN=2;DP=2668;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,58:128:99:1351,0,1765:37,33,31,27
chr2	38156133	.	G	A	3561.5	PASS	AC=2;AF=0.966;AN=2;DP=4410;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:4241,325,0:0,0,10,99
chr2	38177525	.	A	C	1655.5	PASS	AC=1;AF=0.65;AN=2;DP=1204;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:951,0,636:17,7,24,6
chr2	38178406	.	A	G	2336.49	PASS	AC=1;AF=0.633;AN=2;DP=2130;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1184,0,1165:27,20,26,19
chr2	38179134	.	G	A	3462.36	PASS	AC=2;AF=1;AN=2;DP=5065;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4345,423,0:0,0,63,78
chr2	38179414	.	CTG	C	11420.8	PASS	AC=1;AF=0.643;AN=2;DP=6183;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,122:235:99:4730,0,4631:68,45,61,61
chr2	38179773	.	A	G	10535.6	PASS	AC=2;AF=0.884;AN=2;DP=13513;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,410:410:99:12790,1229,0:0,0,188,222
chr2	38180069	.	G	C	1219.77	PASS	AC=2;AF=0.893;AN=2;DP=1609;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1323,123,0:0,0,20,21
chr2	38180088	.	G	A	1287.68	PASS	AC=2;AF=0.784;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1797,138,0:0,0,22,24
chr2	38180091	.	A	G	1093.82	PASS	AC=1;AF=0.579;AN=2;DP=796;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:612,0,512:9,10,13,14
chr2	38208233	.	T	C	1017.38	PASS	AC=1;AF=0.655;AN=2;DP=718;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,25:42:99:778,0,508:14,3,20,5
chr2	38208606	.	A	T	387.56	PASS	AC=1;AF=0.583;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant15-variant16-variant18-variant19-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:316,0,304:3,8,2,10
chr2	38218470	.	TA	T	786.58	PASS	AC=1;AF=0.556;AN=2;DP=290;MQ=60;set=variant3-variant13-variant15-variant29-variant31-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,28:40:99:964,0,354:2,10,10,18
chr2	38244826	.	A	G	4474.84	PASS	AC=1;AF=0.556;AN=2;DP=2780;FractionInformativeReads=1;set=variant3-variant13-variant15-variant29-variant31-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,165:313:99:3752,0,3283:70,78,79,86
chr2	38295456	.	T	A	2091.51	PASS	AC=1;AF=0.531;AN=2;DP=2513;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant16-variant20-variant24-variant25-variant28-variant35-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:99,86:185:99:2452,0,2792:32,67,29,57
chr2	38296890	.	T	C	11715.8	PASS	AC=1;AF=0.694;AN=2;DP=10235;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,206:364:99:5538,0,4080:69,89,110,96
chr2	38297170	.	C	A	14299.9	PASS	AC=2;AF=0.829;AN=2;DP=16794;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,495:497:99:15370,1460,0:0,2,226,269
chr2	38297515	.	G	T	8591.83	PASS	AC=2;AF=0.805;AN=2;DP=9037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,241:243:99:7433,677,0:1,1,110,131
chr2	38297654	.	C	CA	4797.15	PASS	AC=1;AF=0.647;AN=2;DP=5854;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,82:171:99:1983,0,2206:43,46,37,45
chr2	38298067	.	T	TTAGAAAGTTCTTCGCCAATGCACCGCC	2077.61	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=1.657;FractionInformativeReads=0.826;MQ=60;MQRankSum=-1.993;QD=18.07;ReadPosRankSum=-3.391;SOR=0.608;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:52,43:95:99:2115,0,2022:28,24,21,22
chr2	38298150	.	A	G	3178.86	PASS	AC=1;AF=0.708;AN=2;DP=4408;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,71:143:99:1851,0,1762:37,35,34,37
chr2	38298203	.	C	G	3331.67	PASS	AC=1;AF=0.708;AN=2;DP=4601;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,63:140:99:1725,0,1902:39,38,32,31
chr2	38298593	.	G	GA	157.95	PASS	AC=1;AF=0.542;AN=2;DP=166;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant20-variant24-variant28-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:116,0,178:0,7,0,5
chr2	38302177	.	C	A	7427.91	PASS	AC=1;AF=0.571;AN=2;DP=5173;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant15-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant30-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,161:319:99:3967,0,3657:73,85,74,87
chr2	38302390	.	G	C	3563.94	PASS	AC=1;AF=0.568;AN=2;DP=2629;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant28-variant29-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,91:151:99:2454,0,1427:31,29,47,44
chr2	38302544	.	G	A	2986.01	PASS	AC=1;AF=0.571;AN=2;DP=2620;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant28-variant29-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,91:165:99:2265,0,1770:31,43,38,53
chr2	38302794	.	C	T	292.51	PASS	AC=1;AF=0.575;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant15-variant17-variant18-variant21-variant22-variant23-variant28-variant29-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:249,0,507:10,10,6,3
chr2	38303017	.	A	AG	3660.55	PASS	AC=2;AF=1;AN=2;DP=5130;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5639,460,0:0,0,75,78
chr2	38522144	.	CG	CGG,C	392.79	PASS	AC=0,1;AF=0.35,0.15;AN=2;DP=609;MQ=60;set=variant3-filterInvariant13-filterInvariant15-variant18-variant20-filterInvariant23-variant31-filterInvariant36-variant41-variant44	GT:DP:GQ:SB	0/2:78:99:65,0,9,4
chr2	38526324	.	A	T	51.2	PASS	AC=1;AF=0.667;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant15-variant16-variant29-variant31-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:82,0,34:1,0,2,1
chr2	38527497	.	T	G	502.93	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant9-variant15	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:607,0,783:11,18,5,17
chr2	38537626	.	A	C	753.33	PASS	AC=1;AF=0.591;AN=2;DP=843;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant28-variant29-variant31-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:570,0,450:5,13,7,15
chr2	38541830	.	T	C	614.57	PASS	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant24-variant38	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:629,0,385:5,9,7,13
chr2	38542573	.	T	C	495.84	PASS	AC=1;AF=0.591;AN=2;DP=689;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant28-variant29-variant31-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:594,0,461:4,13,2,16
chr2	38603607	.	T	G	1198.4	PASS	AC=1;AF=0.5;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant24-variant38	GT:AD:DP:GQ:PL:SB	0/1:43,57:100:99:1536,0,1042:20,23,28,29
chr2	38604351	.	A	G	1812.03	PASS	AC=1;AF=0.583;AN=2;DP=2730;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant28-variant29-variant30-variant31-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1453,0,1494:31,34,34,32
chr2	38709568	.	A	G	1086.61	PASS	AC=1;AF=0.55;AN=2;DP=896;FractionInformativeReads=1;set=variant3-variant9-variant10-variant13-variant15-variant20-variant23-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1138,0,1104:23,19,24,21
chr2	38827161	.	A	G	2011.22	PASS	AC=1;AF=0.5;AN=2;DP=621;MQ=60;set=variant-variant4-variant6-variant15	GT:AD:DP:GQ:PL:SB	0/1:90,85:175:99:2029,0,2216:37,53,34,51
chr2	38902926	.	T	C	400.15	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;set=variant3-variant6-variant14-variant15-variant23	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:222,0,538:15,2,7,1
chr2	38908271	.	CA	C,CAA	482.25	PASS	AC=1,0;AF=0.357,0.143;AN=2;DP=160;MQ=60;set=variant3-variant6-variant14-variant15-variant22-variant23-variant30	GT:DP:GQ:SB	0/1:29:99:11,3,12,3
chr2	38925610	.	A	G	616.56	PASS	AC=1;AF=0.542;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant19-variant20-variant31-variant33-variant34-variant36-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:540,0,862:4,22,4,14
chr2	38956947	.	A	G	2846.29	PASS	AC=1;AF=0.676;AN=2;DP=3690;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,117:163:99:3093,0,866:19,27,48,69
chr2	38957055	.	T	C	799.48	PASS	AC=2;AF=0.989;AN=2;DP=1231;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1708,153,0:0,0,15,36
chr2	38960927	.	G	A	2316.02	PASS	AC=1;AF=0.689;AN=2;DP=3069;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,98:151:99:2683,0,1182:24,29,48,50
chr2	38961525	.	C	CAA,CA	89.62	PASS	AC=1,0;AF=0.167,0.333;AN=2;DP=32;FS=0;set=variant15-variant34-variant43	GT:DP:GQ:SB	0/1:11:99:6,0,5,0
chr2	38961754	.	G	C	1140.36	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=2.39;FractionInformativeReads=1;MQ=60;MQRankSum=-0.401;QD=8.51;ReadPosRankSum=-0.769;SOR=0.969;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:87,47:134:99:1169,0,2576:52,35,31,16
chr2	38961832	.	G	GA	1340.67	PASS	AC=1;AF=0.5;AN=2;DP=5797;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,146:186:99:2464,0,364:19,21,76,70
chr2	38971040	.	GT	GTT,G,GTTT	3166.29	PASS	AC=1,0,0;AF=0.5,0.026,0.092;AN=2;DP=6713;set=variant-filterInvariant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:254:99:49,48,82,75
chr2	38971641	.	T	TCA	12414.1	PASS	AC=2;AF=0.966;AN=2;DP=11250;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,449:449:99:20209,1363,0:0,0,212,237
chr2	38977371	.	C	T	2270.14	PASS	AC=2;AF=0.738;AN=2;DP=2787;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2889,264,0:0,0,27,61
chr2	38977402	.	T	C	1697.06	PASS	AC=2;AF=0.738;AN=2;DP=1748;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1908,168,0:0,0,15,41
chr2	38978764	.	T	C	1525.77	PASS	AC=2;AF=0.738;AN=2;DP=3111;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3485,277,0:0,0,26,66
chr2	39005205	.	T	C	251.35	PASS	AC=2;AF=0.764;AN=2;DP=430;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:283,27,0:0,0,5,4
chr2	39006603	.	T	G	2484.13	PASS	AC=2;AF=1;AN=2;DP=4274;FS=0;MQ=60;MQRankSum=1.225;ReadPosRankSum=-1.479;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2763,261,0:0,0,42,45
chr2	39008949	.	G	A	1303.85	PASS	AC=1;AF=0.5;AN=2;DP=975;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant10-variant15-variant16-variant25-variant35-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:72,76:148:99:1884,0,1710:36,36,38,38
chr2	39025043	.	GA	GAA,G	414.04	PASS	AC=1,0;AF=0.511,0.375;AN=2;DP=1472;set=Intersection	GT:DP:GQ:SB	0/1:34:32:3,2,12,17
chr2	39025555	.	G	A	5013.23	PASS	AC=2;AF=0.73;AN=2;DP=5710;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:5837,596,0:0,0,96,103
chr2	39025632	.	A	G	3103.78	PASS	AC=2;AF=0.73;AN=2;DP=2900;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2990,281,0:0,0,29,65
chr2	39030074	.	C	T	2429.7	PASS	AC=2;AF=0.703;AN=2;DP=3393;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3597,380,0:0,0,55,72
chr2	39042639	.	G	A	3100.03	PASS	AC=2;AF=0.989;AN=2;DP=3042;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2537,249,0:0,0,46,37
chr2	39045885	.	C	T	604.21	PASS	AC=2;AF=0.73;AN=2;DP=985;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1017,102,0:0,0,19,15
chr2	39050019	.	G	T	808.14	PASS	AC=2;AF=1;AN=2;DP=1238;FS=0;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.06;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:902,69,0:0,0,20,3
chr2	39050061	.	AT	A	1186.56	PASS	AC=2;AF=1;AN=2;DP=2137;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1589,135,0:0,0,34,11
chr2	39050141	.	A	C	2000.21	PASS	AC=2;AF=0.724;AN=2;DP=3875;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,114:115:99:3617,335,0:0,1,70,44
chr2	39065729	.	C	A	687.33	PASS	AC=2;AF=0.73;AN=2;DP=684;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:567,54,0:0,0,11,7
chr2	39075356	.	A	C	436.33	PASS	AC=2;AF=0.73;AN=2;DP=509;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:742,60,0:0,0,17,3
chr2	39082344	.	T	C	5773.31	PASS	AC=2;AF=0.724;AN=2;DP=7520;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,272:272:99:8442,815,0:0,0,123,149
chr2	39090696	.	T	C	2367.78	PASS	AC=2;AF=1;AN=2;DP=2549;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1914,186,0:0,0,20,42
chr2	39103032	.	G	GC	3970.16	PASS	AC=2;AF=1;AN=2;DP=5474;FS=0;MQ=60;MQRankSum=-1.051;ReadPosRankSum=0.015;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4750,405,0:0,0,65,70
chr2	39109935	.	A	AT,ATT	329.64	PASS	AC=1,0;AF=0.45,0.113;AN=2;DP=1839;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:35:99:0,12,0,23
chr2	39117117	.	G	A	3636.86	PASS	AC=2;AF=0.714;AN=2;DP=4716;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4075,419,0:0,0,61,79
chr2	39122900	.	T	G	1325.83	PASS	AC=2;AF=0.966;AN=2;DP=2580;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,54:57:90:1247,90,0:1,2,32,22
chr2	39122941	.	A	C	2139.37	PASS	AC=2;AF=0.768;AN=2;DP=3069;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2643,260,0:0,0,48,39
chr2	39148393	.	G	A	772.4	PASS	AC=1;AF=0.5;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant15-variant16-variant25-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:749,0,874:22,10,22,5
chr2	39177958	.	G	A	528.68	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.866;QD=11.25;ReadPosRankSum=1.034;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:557,0,619:17,8,15,7
chr2	39181774	.	CTTT	CT,C,CTT	40.09	PASS	AC=1,0,0;AF=0.278,0.019,0.5;AN=2;DP=321;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant36-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:4:20:0,1,0,3
chr2	39184964	.	A	G	160.85	PASS	AC=2;AF=0.662;AN=2;DP=622;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:632,57,0:0,0,12,7
chr2	39185048	.	C	T	1060.48	PASS	AC=2;AF=0.909;AN=2;DP=2824;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2338,218,0:0,0,49,24
chr2	39187190	.	T	C	2228.45	PASS	AC=2;AF=0.92;AN=2;DP=6366;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5941,545,0:0,0,97,85
chr2	39187217	.	G	T	2417.25	PASS	AC=1;AF=0.5;AN=2;DP=747;MQ=60;set=variant15-variant19-variant34-variant37	GT:AD:DP:GQ:PL:SB	0/1:111,101:212:99:2445,0,2725:57,54,59,42
chr2	39187519	.	A	G	170.08	PASS	AC=2;AF=0.92;AN=2;DP=2012;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2077,192,0:0,0,21,43
chr2	39198966	.	A	G	844.31	PASS	AC=2;AF=0.92;AN=2;DP=1812;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2020,185,0:0,0,43,19
chr2	39208512	.	A	AG	1611.4	PASS	AC=2;AF=0.92;AN=2;DP=4126;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3403,289,0:0,0,62,34
chr2	39209047	.	A	G	1350.68	PASS	AC=2;AF=0.909;AN=2;DP=4021;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3828,338,0:0,0,43,70
chr2	39209241	.	A	G	983.19	PASS	AC=1;AF=0.5;AN=2;DP=1148;MQ=60;set=variant12-variant13-variant15-variant19-variant30-variant31-variant32-variant34-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,71:148:99:1824,0,1905:48,29,41,30
chr2	39209426	.	A	G	1797.55	PASS	AC=2;AF=0.909;AN=2;DP=6236;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5011,482,0:0,0,70,91
chr2	39210398	.	A	T	7839.98	PASS	AC=2;AF=0.92;AN=2;DP=22235;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,680:681:99:21141,1999,0:1,0,313,367
chr2	39210719	.	T	TTA	608.05	PASS	AC=2;AF=0.909;AN=2;DP=1334;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1973,135,0:0,0,17,28
chr2	39211121	.	T	C	3654.87	PASS	AC=2;AF=0.909;AN=2;DP=12672;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,358:358:99:11542,1074,0:0,0,186,172
chr2	39211358	.	TA	T	4859.46	PASS	AC=2;AF=0.92;AN=2;DP=12246;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,353:353:99:12547,1062,0:0,0,189,164
chr2	39212565	.	T	TTG	1839.79	PASS	AC=2;AF=0.909;AN=2;DP=5479;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:6108,415,0:0,0,72,62
chr2	39212637	.	T	C	1511.29	PASS	AC=2;AF=0.731;AN=2;DP=5341;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4337,452,0:0,0,74,77
chr2	39214821	.	A	C	154.46	PASS	AC=2;AF=0.929;AN=2;DP=454;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:537,45,0:0,0,3,12
chr2	39224351	.	G	T	482.27	PASS	AC=2;AF=0.92;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1072,93,0:0,0,23,8
chr2	39224615	.	G	GT	466.71	PASS	AC=2;AF=0.92;AN=2;DP=1679;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1196,120,0:0,0,11,29
chr2	39233500	.	G	A	128.41	PASS	AC=2;AF=0.93;AN=2;DP=823;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:654,57,0:0,0,15,4
chr2	39251375	.	T	TCAC	346.36	PASS	AC=2;AF=0.932;AN=2;DP=714;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:934,63,0:0,0,5,16
chr2	39262068	.	C	T	545.31	PASS	AC=2;AF=0.92;AN=2;DP=1866;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1814,159,0:0,0,14,39
chr2	39281730	.	G	C	152.82	PASS	AC=2;AF=0.909;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:657,54,0:0,0,15,3
chr2	39402978	.	A	AG	7469.99	PASS	AC=2;AF=0.92;AN=2;DP=15860;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,424:424:99:16891,1275,0:0,0,229,195
chr2	39406572	.	C	A	444.25	PASS	AC=2;AF=0.898;AN=2;DP=1086;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,31:32:86:1082,86,0:1,0,6,25
chr2	39440727	.	G	C	304.5	PASS	AC=2;AF=0.89;AN=2;DP=1377;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1101,111,0:0,0,14,23
chr2	39452861	.	C	T	1326.16	PASS	AC=2;AF=0.895;AN=2;DP=2503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1676,147,0:0,0,30,19
chr2	39476482	.	T	C	2460.87	PASS	AC=2;AF=0.897;AN=2;DP=2589;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2914,269,0:0,0,61,29
chr2	39477170	.	T	C	4186.78	PASS	AC=2;AF=0.897;AN=2;DP=6276;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:7042,650,0:0,0,78,139
chr2	39479122	.	G	C	240.22	PASS	AC=2;AF=0.927;AN=2;DP=518;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:677,51,0:0,0,2,15
chr2	39494197	.	C	T	343.89	PASS	AC=2;AF=0.897;AN=2;DP=735;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1060,81,0:0,0,24,3
chr2	39494469	.	C	G	237.59	PASS	AC=2;AF=0.917;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:350,33,0:0,0,4,7
chr2	39507417	.	T	A	838.37	PASS	AC=2;AF=0.888;AN=2;DP=3134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2637,293,0:0,0,50,48
chr2	39514136	.	T	C	557.11	PASS	AC=2;AF=0.888;AN=2;DP=1503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1131,122,0:0,0,16,25
chr2	39514204	.	G	C	148.54	PASS	AC=2;AF=0.897;AN=2;DP=426;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:529,42,0:0,0,2,12
chr2	39526842	.	A	C	1148.2	PASS	AC=2;AF=1;AN=2;DP=1964;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1793,171,0:0,0,35,22
chr2	39536689	.	ATT	ATTT,ATTTT,ATTTTT,AT,A	60.34	PASS	AC=0,1,0,0,0;AF=0.233,0.2,0.1,0.017,0.017;AN=2;DP=1462;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant15-filterInvariant16-variant17-filterInvariant20-variant22-variant23-variant25-variant26-variant28-variant29-variant32-variant33-filterInvariant35-variant36-filterInvariant38-variant39-variant43-variant44	GT:DP:GQ:SB	0/2:17:49:0,5,6,6
chr2	39542658	.	ATT	AT,A	323.77	PASS	AC=2,0;AF=0.872,0.051;AN=2;DP=725;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:23:69:0,0,5,18
chr2	39553271	.	A	G	2452.21	PASS	AC=2;AF=0.905;AN=2;DP=3852;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4038,369,0:0,0,75,48
chr2	39558928	.	G	A	3143.46	PASS	AC=2;AF=0.905;AN=2;DP=4863;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4453,443,0:0,0,72,76
chr2	39564620	.	C	A	751.96	PASS	AC=2;AF=0.907;AN=2;DP=2305;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2071,218,0:0,0,39,34
chr2	39570427	.	T	C	1034	PASS	AC=2;AF=0.905;AN=2;DP=1117;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:973,84,0:0,0,22,6
chr2	39583446	.	A	G	3211.29	PASS	AC=2;AF=0.905;AN=2;DP=4007;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3700,395,0:0,0,61,71
chr2	39664400	.	T	A	943.36	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=4.201;FractionInformativeReads=1;MQ=60;MQRankSum=0.605;QD=10.97;ReadPosRankSum=2.747;SOR=0.335;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:972,0,1134:15,28,20,23
chr2	39944055	.	G	A	32.47	PASS	AC=1;AF=0.683;AN=2;DP=379;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:109,0,168:5,0,3,1
chr2	39963561	.	T	A	2305.23	PASS	AC=1;AF=0.5;AN=2;DP=1107;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant19-variant24-variant38	GT:AD:DP:GQ:PL:SB	0/1:175,100:275:99:2098,0,4067:84,91,48,52
chr2	39963667	.	A	G	1184.81	PASS	AC=1;AF=0.686;AN=2;DP=3906;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,69:124:99:1957,0,1513:22,33,25,44
chr2	39982898	.	G	GAGTAT	124.57	PASS	AC=1;AF=0.708;AN=2;DP=172;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:99:204,0,122:2,0,5,0
chr2	39993167	.	T	C	1261.98	PASS	AC=1;AF=0.661;AN=2;DP=3263;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,63:132:99:1579,0,1685:39,30,33,30
chr2	39995885	.	C	T	280.43	PASS	AC=1;AF=0.688;AN=2;DP=1216;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:754,0,756:13,17,10,17
chr2	39995908	.	A	G	99.12	PASS	AC=1;AF=0.69;AN=2;DP=856;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,17:44:99:472,0,741:9,18,6,11
chr2	40006430	.	A	C	539.13	PASS	AC=1;AF=0.679;AN=2;DP=1016;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:732,0,969:8,17,3,18
chr2	40006442	.	C	T	472.49	PASS	AC=1;AF=0.679;AN=2;DP=767;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:527,0,808:5,13,1,12
chr2	40006488	.	A	AGGGAGAGGGAGAGGGAGAGG	48.14	PASS	AC=1;AF=0.792;AN=2;DP=150;set=variant3-variant6-variant7-variant11-variant15-variant17-variant18-variant25-variant31-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:158,0,296:4,1,2,2
chr2	40339478	.	GCC	GC,G	4722.76	PASS	AC=1,1;AF=0.682,0.307;AN=2;DP=9869;MQ=60;set=Intersection	GT:DP:GQ:SB	2/1:264:99:17,3,90,154
chr2	40339798	.	CA	C,CAAA,CAAAA,CAA	1312.99	PASS	AC=0,1,0,0;AF=0.129,0.419,0.016,0.065;AN=2;DP=5271;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:161:99:59,30,42,30
chr2	40339986	.	T	C	4023.85	PASS	AC=1;AF=0.629;AN=2;DP=10127;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:229,202:431:99:4710,0,5568:98,131,96,106
chr2	40340671	.	CA	C	3301.37	PASS	AC=1;AF=0.648;AN=2;DP=3941;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,73:175:99:2194,0,3278:54,48,37,36
chr2	40341388	.	T	C	1944.47	PASS	AC=1;AF=0.536;AN=2;DP=1696;MQ=60;set=variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,79:122:99:2166,0,1259:9,34,33,46
chr2	40341605	.	G	A	499.16	PASS	AC=1;AF=0.563;AN=2;DP=954;MQ=60;set=variant2-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,60:111:99:1575,0,1218:24,27,27,33
chr2	40341660	.	C	T	461.77	PASS	AC=1;AF=0.648;AN=2;DP=1743;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1199,0,1311:22,27,20,27
chr2	40341847	.	C	T	1743.09	PASS	AC=1;AF=0.536;AN=2;DP=1994;MQ=60;set=variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,78:173:99:1767,0,2460:51,44,43,35
chr2	40366301	.	G	A	136.46	PASS	AC=1;AF=0.638;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:258,0,300:8,4,6,3
chr2	40392313	.	G	C	844.77	PASS	AC=2;AF=0.966;AN=2;DP=1123;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1340,108,0:0,0,5,31
chr2	40402081	.	G	C	842.59	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=0.98;MQ=60;MQRankSum=0.44;QD=16.52;ReadPosRankSum=1.539;SOR=0.843;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:871,0,467:6,13,9,22
chr2	40402275	.	G	A	513.67	PASS	AC=1;AF=0.842;AN=2;DP=786;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:232,0,265:4,4,6,3
chr2	40403104	.	A	G	2498.41	PASS	AC=1;AF=0.893;AN=2;DP=3443;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,47:115:99:1041,0,1584:42,26,28,19
chr2	40404839	.	C	T	691.11	PASS	AC=1;AF=0.786;AN=2;DP=2651;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,47:99:99:1200,0,1423:35,17,32,15
chr2	40564647	.	G	A	409.9	PASS	AC=1;AF=0.587;AN=2;DP=1170;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:1132,0,1243:11,17,12,18
chr2	40564655	.	C	T	313.41	PASS	AC=1;AF=0.587;AN=2;DP=1092;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:1104,0,1217:10,16,11,17
chr2	40655563	.	CCACACACACACACACA	CCACACACACACA,CCACACACACACACA,CCACACA,CCACACACACA,C,CCACACACACACACACACA	1935.28	PASS	AC=1,0,1,0,0,0;AF=0.58,0.159,0.136,0.057,0.011,0.011;AN=2;DP=2244;set=Intersection	GT:DP:GQ:SB	3/1:45:99:0,0,36,9
chr2	42163335	.	G	A	500.6	PASS	AC=1;AF=0.5;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant22-variant25-variant27-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:346,0,788:9,18,7,8
chr2	42164215	.	A	C	1531.98	PASS	AC=1;AF=0.697;AN=2;DP=1702;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:752,0,807:19,13,17,13
chr2	42164619	.	TACAC	TAC,TACACAC,T	63	PASS	AC=0,1,0;AF=0.318,0.167,0.03;AN=2;DP=1070;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant29-variant30-variant31-variant35-variant36-filterInvariant37-variant38-variant40-variant42-filterInvariant44	GT:DP:GQ:SB	0/2:27:99:15,4,4,4
chr2	42164975	.	AC	A	567.24	PASS	AC=1;AF=0.531;AN=2;DP=802;MQ=60;set=variant5-variant6-variant7-variant13-variant14-variant15-variant22-variant24-variant25-variant27-variant31-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:652,0,1066:12,21,12,10
chr2	42165462	.	A	G	344.71	PASS	AC=1;AF=0.545;AN=2;DP=771;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:595,0,448:11,7,8,12
chr2	42165754	.	C	T	2176.48	PASS	AC=1;AF=0.568;AN=2;DP=3566;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,82:167:99:3172,0,5171:46,39,47,35
chr2	42165757	.	C	G	2697.6	PASS	AC=1;AF=0.5;AN=2;DP=1079;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant22-variant25-variant27-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:86,83:169:99:3169,0,5193:46,40,47,36
chr2	42165948	.	T	C	439.4	PASS	AC=1;AF=0.5;AN=2;DP=198;MQ=60;set=variant14-variant15-variant22-variant25-variant27-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:702,0,828:1,14,2,16
chr2	42165961	.	T	A	367.6	PASS	AC=1;AF=0.568;AN=2;DP=534;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:591,0,760:1,11,2,13
chr2	42174733	.	A	G	775.42	PASS	AC=1;AF=0.5;AN=2;DP=533;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant22-variant25-variant27-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,38:76:99:1076,0,1000:16,22,12,26
chr2	42181051	.	GCA	G,GCACA	107.51	PASS	AC=1,0;AF=0.5,0.045;AN=2;DP=483;set=variant5-variant6-variant7-variant10-variant12-variant15-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant36-variant37-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:26:99:12,6,6,2
chr2	42275074	.	G	GCGGA	167.25	PASS	AC=2;AF=1;AN=2;DP=30;FS=0;MQ=60;set=variant4-variant5-variant8-variant13-variant15-variant20-variant22-variant23-variant29	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:70,6,0:0,0,1,1
chr2	42396722	.	A	G	6018.09	PASS	AC=1;AF=0.718;AN=2;DP=8759;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,134:251:99:3468,0,2762:61,56,68,66
chr2	42483860	.	C	G	381.09	PASS	AC=1;AF=0.5;AN=2;DP=32;FractionInformativeReads=1;MQ=60;set=variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:91:409,0,91:2,3,3,10
chr2	42488198	.	A	G	148.2	PASS	AC=1;AF=0.64;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:93:93,0,392:10,1,2,1
chr2	42491751	.	C	T	112.25	PASS	AC=1;AF=0.62;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,119:3,0,2,1
chr2	42492191	.	A	C	554.14	PASS	AC=1;AF=0.596;AN=2;DP=1629;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,44:96:99:977,0,1286:22,30,18,26
chr2	42492238	.	C	CT	150.54	PASS	AC=1;AF=0.5;AN=2;DP=334;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant12-variant15-variant29-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:425,0,339:3,13,1,18
chr2	42510018	.	A	G	3356.25	PASS	AC=2;AF=1;AN=2;DP=4934;FS=0;MQ=60;MQRankSum=-0.835;ReadPosRankSum=0.402;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3583,370,0:0,0,73,51
chr2	42511903	.	A	G	1093.43	PASS	AC=1;AF=0.593;AN=2;DP=3645;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,53:139:99:1257,0,2278:32,54,21,32
chr2	42513582	.	C	T	496.86	PASS	AC=1;AF=0.5;AN=2;DP=388;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant12-variant15-variant29-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:780,0,655:2,16,4,20
chr2	42515388	.	A	G	2318.96	PASS	AC=2;AF=0.943;AN=2;DP=3397;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2672,255,0:0,0,50,35
chr2	42515437	.	A	G	752.81	PASS	AC=1;AF=0.593;AN=2;DP=2428;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,38:111:99:869,0,1953:35,38,20,18
chr2	42522756	.	A	G	660.61	PASS	AC=1;AF=0.604;AN=2;DP=311;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:216,0,100:0,4,1,6
chr2	42531871	.	G	T	153.35	PASS	AC=1;AF=0.583;AN=2;DP=228;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:238,0,146:0,4,1,6
chr2	42544821	.	C	T	267.2	PASS	AC=1;AF=0.633;AN=2;DP=720;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:243,0,595:6,15,2,8
chr2	42553210	.	C	A	1053.2	PASS	AC=1;AF=0.58;AN=2;DP=1834;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,52:93:99:1315,0,921:27,14,35,17
chr2	42556022	.	A	T	485.32	PASS	AC=1;AF=0.577;AN=2;DP=1211;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:509,0,667:17,12,14,11
chr2	42557759	.	CT	C	1331.12	PASS	AC=1;AF=0.5;AN=2;DP=18486;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:284,135:419:99:1602,0,5233:127,157,58,77
chr2	42560975	.	A	G	823.52	PASS	AC=1;AF=0.718;AN=2;DP=2208;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,27:78:99:564,0,1277:25,26,15,12
chr2	42577170	.	A	G	2647.7	PASS	AC=1;AF=0.716;AN=2;DP=8262;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:165,132:297:99:3534,0,4237:73,92,64,68
chr2	42577220	.	A	G,AGG	7813.44	PASS	AC=0,1;AF=0.024,0.571;AN=2;DP=3816;MQ=60;set=variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:DP:GQ:SB	0/2:246:99:64,69,58,55
chr2	42577803	.	T	TAAATACACAC	5411.3	PASS	AC=1;AF=0.716;AN=2;DP=8841;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:148,142:290:99:5563,0,6946:73,75,74,68
chr2	42578149	.	A	G	403.28	PASS	AC=1;AF=0.641;AN=2;DP=1303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:612,0,486:8,11,13,11
chr2	42580071	.	T	C	1529.35	PASS	AC=1;AF=0.596;AN=2;DP=4207;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,87:189:99:2062,0,2570:63,39,50,37
chr2	42588195	.	T	C	596.1	PASS	AC=1;AF=0.593;AN=2;DP=2433;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,55:98:99:1218,0,1045:23,20,31,24
chr2	42588856	.	T	A	1877.34	PASS	AC=1;AF=0.542;AN=2;DP=1327;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant15-variant16-variant24-variant29-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,48:116:99:989,0,1737:28,40,25,23
chr2	42669620	.	T	C	3846.8	PASS	AC=1;AF=0.607;AN=2;DP=10383;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:224,230:454:99:5810,0,5539:125,99,130,100
chr2	42670398	.	A	T	5607.57	PASS	AC=1;AF=0.58;AN=2;DP=10807;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant19-variant23-variant24-variant26-variant29-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:258,260:518:99:6305,0,6235:140,118,130,130
chr2	42719847	.	T	TG	5343.58	PASS	AC=2;AF=1;AN=2;DP=6655;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:9381,632,0:0,0,134,65
chr2	42719860	.	G	GC	6182.35	PASS	AC=2;AF=1;AN=2;DP=7844;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:10628,731,0:0,0,157,86
chr2	42721773	.	T	C	1328.48	PASS	AC=2;AF=0.77;AN=2;DP=4658;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4171,409,0:0,0,88,49
chr2	42722048	.	A	G	433.64	PASS	AC=2;AF=0.77;AN=2;DP=2115;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1522,129,0:0,0,11,32
chr2	42722410	.	T	A	101.97	PASS	AC=2;AF=0.77;AN=2;DP=607;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:827,78,0:0,0,10,16
chr2	42795716	.	A	C	231.01	PASS	AC=2;AF=0.988;AN=2;DP=455;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:30:450,30,0:0,0,7,2
chr2	42795719	.	A	C	276.01	PASS	AC=2;AF=0.988;AN=2;DP=491;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:42:610,42,0:0,0,10,3
chr2	42795727	.	T	C	278.33	PASS	AC=2;AF=1;AN=2;DP=562;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:651,45,0:0,0,11,4
chr2	42795954	.	T	C	2610.68	PASS	AC=2;AF=1;AN=2;DP=5724;FS=0;MQRankSum=0.144;ReadPosRankSum=0.808;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4396,450,0:0,0,64,87
chr2	42836516	.	A	G	841.27	PASS	AC=2;AF=0.816;AN=2;DP=867;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1311,101,0:0,0,30,4
chr2	42922888	.	AT	A	449.39	PASS	AC=2;AF=0.63;AN=2;DP=1303;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:1843,212,0:0,0,43,28
chr2	42931217	.	A	C	236.14	PASS	AC=2;AF=0.771;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:528,39,0:0,0,12,1
chr2	42935961	.	C	T	527.89	PASS	AC=2;AF=0.743;AN=2;DP=2556;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3221,305,0:0,0,64,38
chr2	42935979	.	C	T	617.89	PASS	AC=2;AF=0.743;AN=2;DP=2839;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3406,321,0:0,0,63,44
chr2	42936419	.	G	GA	2088.9	PASS	AC=2;AF=0.757;AN=2;DP=7767;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,256:259:99:7220,704,0:1,2,116,140
chr2	42936547	.	A	C	3820.91	PASS	AC=2;AF=0.757;AN=2;DP=7688;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:7741,744,0:0,0,122,127
chr2	42981239	.	A	G	992.1	PASS	AC=2;AF=0.587;AN=2;DP=1299;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant27-variant29-variant31-variant33-variant35-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1752,141,0:0,0,31,16
chr2	42981990	.	C	T	1595.19	PASS	AC=2;AF=0.652;AN=2;DP=2877;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,95:97:99:2959,241,0:1,1,51,44
chr2	42982169	.	G	A	1384	PASS	AC=2;AF=0.587;AN=2;DP=2475;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant27-variant29-variant31-variant33-variant35-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:5146,355,0:0,0,58,58
chr2	42982175	.	G	A	1417.71	PASS	AC=2;AF=0.587;AN=2;DP=2414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant27-variant29-variant31-variant33-variant35-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5153,355,0:0,0,56,62
chr2	42983004	.	T	C	1769.49	PASS	AC=2;AF=0.652;AN=2;DP=3048;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3548,330,0:0,0,53,57
chr2	42989744	.	G	C	1240.22	PASS	AC=2;AF=0.652;AN=2;DP=3198;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3584,360,0:0,0,67,53
chr2	42990336	.	T	G	1418.96	PASS	AC=2;AF=0.652;AN=2;DP=4554;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,172:173:99:5858,509,0:1,0,84,88
chr2	42994814	.	C	G	964.21	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant15-variant32	GT:AD:DP:GQ:PL:SB	0/1:50,39:89:99:992,0,1308:24,26,20,19
chr2	42996709	.	ATGTGTGTGTGTG	A,ATG,ATGTG,ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTG,ATGTGTG,ATGTGTGTGTGTGTGTG	392.62	PASS	AC=0,0,2,0,0,0,0;AF=0.244,0.195,0.293,0.037,0.012,0.012,0.024;AN=2;DP=1120;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	3/3:34:56:1,1,19,13
chr2	42996759	.	AAGAG	A	481.76	PASS	AC=2;AF=0.789;AN=2;DP=1681;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1605,126,0:0,0,21,21
chr2	43010130	.	AC	A	2229.93	PASS	AC=1;AF=0.5;AN=2;DP=716;MQ=60;set=variant2-variant6-variant9-variant15-variant18-variant21-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,44:97:99:1408,0,1748:27,26,19,25
chr2	43011169	.	G	T	329.82	PASS	AC=1;AF=0.729;AN=2;DP=1324;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:529,0,414:7,10,7,13
chr2	43015612	.	G	T	921.96	PASS	AC=2;AF=0.817;AN=2;DP=2653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2415,230,0:0,0,48,29
chr2	43015719	.	T	C	2030.08	PASS	AC=2;AF=0.817;AN=2;DP=5771;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5419,557,0:0,0,98,88
chr2	43015757	.	G	A	2165.81	PASS	AC=2;AF=0.817;AN=2;DP=5058;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4693,484,0:0,0,77,85
chr2	43015814	.	G	A	803.83	PASS	AC=1;AF=0.567;AN=2;DP=1100;MQ=60;set=variant3-variant8-variant9-variant10-variant15-variant16-variant17-variant22-variant24-variant26-variant27-variant29-variant31-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:61,46:107:99:1095,0,1459:23,38,18,28
chr2	43015902	.	G	A	322.92	PASS	AC=2;AF=0.817;AN=2;DP=751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1019,81,0:0,0,6,21
chr2	43019347	.	G	C	928.19	PASS	AC=2;AF=0.817;AN=2;DP=970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:970,90,0:0,0,20,10
chr2	43019364	.	G	C	1230.02	PASS	AC=2;AF=0.817;AN=2;DP=1274;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1310,117,0:0,0,26,13
chr2	43019730	.	A	G	3543.61	PASS	AC=2;AF=0.81;AN=2;DP=4965;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4962,467,0:0,0,64,92
chr2	43019808	.	C	A	678.77	PASS	AC=1;AF=0.545;AN=2;DP=665;MQ=60;set=variant2-variant4-variant9-variant15-variant18-variant21-variant26-variant27-variant29-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,26:71:99:582,0,1214:16,29,8,18
chr2	43451130	.	GT	G,GTTT	393.63	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=5708;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:153:99:48,64,17,24
chr2	43452183	.	A	G	5412.89	PASS	AC=1;AF=0.609;AN=2;DP=4240;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant30-variant34-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:107,102:209:99:2586,0,2580:56,51,55,47
chr2	43514036	.	G	A	2155.17	PASS	AC=1;AF=0.587;AN=2;DP=1801;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant30-variant34-variant35-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:43,53:96:99:1359,0,972:25,18,30,23
chr2	43547442	.	T	C	361.12	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=3.448;FractionInformativeReads=1;MQ=60;MQRankSum=0.821;QD=11.65;ReadPosRankSum=-0.18;SOR=1.473;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:389,0,460:11,7,10,3
chr2	43625078	.	T	C	512.17	PASS	AC=1;AF=0.64;AN=2;DP=735;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:606,0,530:14,5,16,4
chr2	43625184	.	T	A	1160.22	PASS	AC=1;AF=0.609;AN=2;DP=1867;MQ=60;set=variant-variant2-variant8-variant10-variant11-variant13-variant14-variant15-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,67:119:99:1646,0,1235:27,25,39,28
chr2	43657510	.	T	A	137.68	PASS	AC=1;AF=0.64;AN=2;DP=418;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:321,0,283:2,8,2,11
chr2	43732958	.	C	T	106.61	PASS	AC=1;AF=0.591;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant14-variant15-variant21-variant22-variant23-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:441,0,134:3,4,2,11
chr2	43754992	.	C	T	424.42	PASS	AC=1;AF=0.529;AN=2;DP=1272;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant33-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1219,0,1442:33,21,32,19
chr2	43778857	.	GA	G	68.39	PASS	AC=1;AF=0.553;AN=2;DP=318;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:96:238,0,96:4,1,8,2
chr2	43783294	.	A	T	248.51	PASS	AC=1;AF=0.55;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:197,0,448:11,0,5,1
chr2	43787576	.	G	A	334.43	PASS	AC=1;AF=0.556;AN=2;DP=465;set=variant2-variant3-variant4-variant5-variant7-variant8-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:461,0,402:5,11,6,12
chr2	43789786	.	C	G	481.23	PASS	AC=1;AF=0.575;AN=2;DP=722;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:437,0,664:14,10,13,3
chr2	43790259	.	T	C	2442.96	PASS	AC=1;AF=0.571;AN=2;DP=4712;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:99,133:232:99:3369,0,2601:53,46,68,65
chr2	43790314	.	G	C	2208.54	PASS	AC=1;AF=0.6;AN=2;DP=2059;MQ=60;set=variant-variant15-variant22-variant25-variant29-variant32-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:150,117:267:99:2905,0,3695:68,82,62,55
chr2	43790347	.	A	T	2510.2	PASS	AC=1;AF=0.575;AN=2;DP=4576;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:122,139:261:99:3567,0,3232:66,56,61,78
chr2	43790448	.	A	C	2426.69	PASS	AC=1;AF=0.531;AN=2;DP=3050;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:140,110:250:99:3025,0,3811:69,71,64,46
chr2	43791363	.	C	T	2349.19	PASS	AC=2;AF=0.721;AN=2;DP=5523;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6837,636,0:0,0,79,133
chr2	43791563	.	T	C	1361.28	PASS	AC=1;AF=0.571;AN=2;DP=2478;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:74,62:136:99:1748,0,1984:45,29,37,25
chr2	43791766	.	A	G	1986.79	PASS	AC=1;AF=0.575;AN=2;DP=3590;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:98,78:176:99:2036,0,2730:44,54,35,43
chr2	43792538	.	C	T	147.72	PASS	AC=1;AF=0.579;AN=2;DP=282;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:210,0,376:11,0,6,1
chr2	43793222	.	G	C	407.71	PASS	AC=1;AF=0.553;AN=2;DP=385;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:154,0,687:16,2,5,1
chr2	43793275	.	CA	C	629.3	PASS	AC=1;AF=0.553;AN=2;DP=1124;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:44,29:73:99:612,0,998:30,14,21,8
chr2	43793725	.	G	A	810.59	PASS	AC=1;AF=0.553;AN=2;DP=1639;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:51,37:88:99:929,0,1364:28,23,18,19
chr2	43793963	.	TA	TAAA,T,TAA	109.36	PASS	AC=1,0,0;AF=0.475,0.05,0.025;AN=2;DP=415;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant17-variant19-filterInvariant20-variant21-variant23-variant24-variant26-variant34-variant35-variant37-variant40	GT:DP:GQ:SB	0/1:29:99:3,12,3,11
chr2	43797619	.	C	T	975.72	PASS	AC=1;AF=0.531;AN=2;DP=1408;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:51,38:89:99:767,0,1089:26,25,20,18
chr2	43797710	.	G	A	336	PASS	AC=1;AF=0.553;AN=2;DP=860;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:425,0,663:5,17,4,11
chr2	43798792	.	G	A	594.64	PASS	AC=1;AF=0.553;AN=2;DP=1322;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:940,0,874:22,15,20,15
chr2	43799070	.	C	T	148.53	PASS	AC=2;AF=0.917;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,1,3
chr2	43799853	.	C	T	368.24	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant15	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:412,0,192:6,0,11,0
chr2	43800174	.	A	G	823.9	PASS	AC=1;AF=0.575;AN=2;DP=1620;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:38,43:81:99:1142,0,936:15,23,13,30
chr2	43801712	.	A	G	944.33	PASS	AC=1;AF=0.575;AN=2;DP=1822;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:62,55:117:99:1347,0,1708:29,33,24,31
chr2	43802261	.	C	A	235.31	PASS	AC=2;AF=1;AN=2;DP=318;FS=0;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:329,27,0:0,0,1,8
chr2	43804229	.	T	C	1335.5	PASS	AC=1;AF=0.575;AN=2;DP=1796;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant34-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:57,46:103:99:1112,0,1428:27,30,20,26
chr2	43817950	.	CT	C	852.9	PASS	AC=1;AF=0.531;AN=2;DP=1360;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1090,0,1045:22,20,24,20
chr2	43820201	.	T	C	636.09	PASS	AC=1;AF=0.595;AN=2;DP=672;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant9-variant11-variant13-variant15-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:447,0,549:7,11,4,12
chr2	43864526	.	A	G	1061.41	PASS	AC=2;AF=0.757;AN=2;DP=2413;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1904,177,0:0,0,28,31
chr2	43864555	.	T	C	706.65	PASS	AC=2;AF=0.757;AN=2;DP=2002;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1611,155,0:0,0,25,27
chr2	43871983	.	T	C	1573.86	PASS	AC=2;AF=0.757;AN=2;DP=2139;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2285,216,0:0,0,25,47
chr2	43872032	.	A	G	180.02	PASS	AC=2;AF=0.583;AN=2;DP=582;MQ=60;set=variant-variant2-variant4-variant13-variant15-variant17-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1316,114,0:0,0,8,30
chr2	43902511	.	G	C	2120.68	PASS	AC=2;AF=0.78;AN=2;DP=2308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2913,264,0:0,0,59,29
chr2	43903066	.	A	G	3874.81	PASS	AC=2;AF=0.78;AN=2;DP=4997;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5191,513,0:0,0,80,91
chr2	43903354	.	T	C	5603.01	PASS	AC=2;AF=0.768;AN=2;DP=6587;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4924,489,0:0,0,76,87
chr2	43903483	.	T	C	2633.33	PASS	AC=2;AF=0.78;AN=2;DP=3620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2633,234,0:0,0,29,49
chr2	43905898	.	G	GAGGTGGAGGTGC	235.58	PASS	AC=2;AF=0.606;AN=2;DP=597;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:68:925,68,0:0,0,12,9
chr2	43921489	.	A	T	488.03	PASS	AC=2;AF=0.662;AN=2;DP=939;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:965,83,0:0,0,22,6
chr2	43926943	.	T	A	1424.45	PASS	AC=2;AF=0.662;AN=2;DP=4440;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:6160,590,0:0,0,102,95
chr2	43931055	.	CTTTTTTTTT	CTTT,CTT,CT,CTTTT,C,CTTTTT,CTTTTTTT,CTTTTTT	122.74	PASS	AC=0,0,0,2,0,0,0,0;AF=0.13,0.174,0.065,0.087,0.022,0.022,0.043,0.022;AN=2;DP=390;set=variant-variant2-variant4-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant26-variant27-variant31-variant32-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	4/4:14:40:0,0,9,5
chr2	43931176	.	T	C	1474.32	PASS	AC=2;AF=0.662;AN=2;DP=3392;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3619,345,0:0,0,59,56
chr2	43931321	.	G	A	533.84	PASS	AC=2;AF=0.662;AN=2;DP=1157;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1970,183,0:0,0,18,43
chr2	43937500	.	T	C	225.77	PASS	AC=1;AF=0.545;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant15-variant17-variant21-variant32-variant34-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,26:43:99:939,0,495:9,8,18,8
chr2	43937723	.	CTTTTT	CTTTT,CTTTTTTT,CTTTTTT,CTTTTTTTT,CTTT,C	137.46	PASS	AC=0,0,1,0,0,0;AF=0.188,0.063,0.234,0.031,0.016,0.016;AN=2;DP=1797;set=variant-variant2-variant4-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant19-filterInvariant20-variant21-filterInvariant22-variant23-variant26-variant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-filterInvariant35-variant38-variant39-filterInvariant40-variant42-variant44	GT:DP:GQ:SB	0/3:48:99:9,21,7,11
chr2	43939525	.	A	G	594.32	PASS	AC=1;AF=0.536;AN=2;DP=1077;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant15-variant17-variant21-variant26-variant32-variant34-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1326,0,993:16,25,19,30
chr2	43947944	.	A	G	458.56	PASS	AC=1;AF=0.54;AN=2;DP=508;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:430,0,671:4,16,2,12
chr2	43953664	.	A	G	572.26	PASS	AC=1;AF=0.645;AN=2;DP=1044;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:397,0,565:4,14,3,11
chr2	43956667	.	G	A	121.67	PASS	AC=1;AF=0.611;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant15-variant17-variant32-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:94:94,0,321:8,0,3,0
chr2	43989525	.	C	G	2654.48	PASS	AC=1;AF=0.5;AN=2;DP=675;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:114,148:262:99:3448,0,2502:56,58,71,77
chr2	43991357	.	A	C	686.62	PASS	AC=1;AF=0.791;AN=2;DP=1259;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:322,0,489:13,6,8,4
chr2	44066098	.	C	T	1436.18	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=0.664;FractionInformativeReads=1;MQ=60;MQRankSum=1.12;QD=11.4;ReadPosRankSum=-3.941;SOR=0.594;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:67,59:126:99:1464,0,1720:30,37,28,31
chr2	44099433	.	C	A	2557.26	PASS	AC=2;AF=0.538;AN=2;DP=2847;MQ=60;set=variant3-variant5-variant10-variant15-variant16-variant22-variant28-variant31-variant33-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7601,736,0:0,0,91,156
chr2	44099582	.	G	A	447.39	PASS	AC=2;AF=0.538;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant15-variant16-variant22-variant28-variant31-variant33-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:989,84,0:0,0,5,23
chr2	44101214	.	CA	C	1285.91	PASS	AC=2;AF=0.895;AN=2;DP=1589;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1687,126,0:0,0,5,37
chr2	44101229	.	A	G	497.14	PASS	AC=2;AF=0.571;AN=2;DP=184;MQ=60;set=variant3-variant5-variant15-variant22-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1324,96,0:0,0,2,30
chr2	44101394	.	A	G	163.44	PASS	AC=2;AF=0.838;AN=2;DP=297;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:257,18,0:0,0,6,0
chr2	44101430	.	T	G	153.33	PASS	AC=1;AF=0.757;AN=2;DP=564;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:341,0,255:8,0,9,1
chr2	44101538	.	C	T	904.47	PASS	AC=2;AF=0.771;AN=2;DP=2520;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2136,218,0:0,0,39,34
chr2	44101649	.	G	GC,GCCC,GCC	1292.76	PASS	AC=0,2,0;AF=0.476,0.226,0.119;AN=2;DP=2017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:42:99:0,0,14,28
chr2	44102491	.	C	T	864.12	PASS	AC=2;AF=0.556;AN=2;DP=733;MQ=60;set=variant4-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2819,254,0:0,0,30,55
chr2	44104925	.	T	C	7565.61	PASS	AC=2;AF=0.826;AN=2;DP=10669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,270:270:99:8143,810,0:0,0,135,135
chr2	44116649	.	G	C	179.44	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.884;FractionInformativeReads=1;MQ=60;MQRankSum=-1.264;QD=9.97;ReadPosRankSum=-1.733;SOR=2.179;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:208,0,369:9,3,6,0
chr2	44116836	.	C	T	1801.87	PASS	AC=1;AF=0.683;AN=2;DP=3123;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,49:101:99:1191,0,1294:31,21,27,22
chr2	44123672	.	TC	T	432.98	PASS	AC=1;AF=0.587;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant14-variant15-variant18-variant22-variant23-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:572,0,320:10,0,12,5
chr2	44145374	.	G	T	1357.23	PASS	AC=1;AF=0.625;AN=2;DP=2658;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant14-variant15-variant18-variant22-variant23-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,75:151:99:1783,0,1955:41,35,37,38
chr2	44152180	.	G	A	2885.92	PASS	AC=1;AF=0.717;AN=2;DP=3055;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,49:113:99:1067,0,1670:31,33,22,27
chr2	44172444	.	A	C	1832.69	PASS	AC=1;AF=0.611;AN=2;DP=3527;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant14-variant15-variant18-variant22-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,82:166:99:1837,0,2196:50,34,46,36
chr2	44172636	.	T	C	533.93	PASS	AC=1;AF=0.5;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant22-variant27	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:562,0,696:5,18,4,16
chr2	44173422	.	T	G	682.69	PASS	AC=1;AF=0.615;AN=2;DP=1422;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant14-variant15-variant18-variant22-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,42:72:99:1081,0,732:12,18,14,28
chr2	44174968	.	T	A	840.01	PASS	AC=1;AF=0.5;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant16-variant22-variant27	GT:AD:DP:GQ:PL:SB	0/1:51,32:83:99:710,0,1314:20,31,11,21
chr2	44187829	.	A	C	432.64	PASS	AC=1;AF=0.807;AN=2;DP=2201;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:864,0,867:10,23,11,23
chr2	44201141	.	G	A	292.9	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.848;QD=12.2;ReadPosRankSum=-1.312;SOR=0.534;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:321,0,554:6,9,4,5
chr2	44201376	.	T	C	1201.82	PASS	AC=1;AF=0.5;AN=2;DP=823;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant23-variant32-variant34-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,65:129:99:1491,0,1515:30,34,32,33
chr2	44209477	.	C	T	818.13	PASS	AC=1;AF=0.807;AN=2;DP=2931;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,28:78:99:579,0,1237:26,24,13,15
chr2	44396235	.	T	G	3526.53	PASS	AC=2;AF=0.864;AN=2;DP=4903;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,124:126:99:3662,287,0:1,1,65,59
chr2	44396279	.	C	CCGGAGGCGG	3952.54	PASS	AC=2;AF=0.864;AN=2;DP=4352;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:4455,302,0:0,0,45,49
chr2	44502788	.	A	C	4137.5	PASS	AC=2;AF=0.821;AN=2;DP=8919;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,281:281:99:8316,842,0:0,0,142,139
chr2	44508835	.	G	A	526.57	PASS	AC=2;AF=0.786;AN=2;DP=422;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,1,10
chr2	44512971	.	G	A	3208.95	PASS	AC=2;AF=0.811;AN=2;DP=2520;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2603,217,0:0,0,33,40
chr2	44531081	.	G	T	190.65	PASS	AC=2;AF=0.8;AN=2;DP=701;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:899,69,0:0,0,20,3
chr2	44531484	.	C	T	308.47	PASS	AC=2;AF=0.797;AN=2;DP=1592;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2063,192,0:0,0,18,46
chr2	44541706	.	G	C	1922.28	PASS	AC=2;AF=0.813;AN=2;DP=4369;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:4294,313,0:0,0,41,63
chr2	44541725	.	C	T	1871.62	PASS	AC=2;AF=0.797;AN=2;DP=3314;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:3383,232,0:0,0,31,41
chr2	44541731	.	C	CCA	934.16	PASS	AC=1;AF=0.662;AN=2;DP=3063;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,37:45:99:1188,0,162:2,6,15,22
chr2	44541917	.	AAT	A	1654.87	PASS	AC=2;AF=0.797;AN=2;DP=3009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3860,277,0:0,0,50,42
chr2	44544955	.	G	A	166.1	PASS	AC=2;AF=0.797;AN=2;DP=1448;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1764,168,0:0,0,33,23
chr2	44545234	.	GTTT	GTT,GT,G,GTTTT	463.84	PASS	AC=2,0,0,0;AF=0.663,0.013,0.075,0.013;AN=2;DP=4472;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:87:52:3,6,25,53
chr2	44545576	.	T	C	2375.56	PASS	AC=2;AF=0.797;AN=2;DP=6528;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,251:251:99:7916,752,0:0,0,153,98
chr2	44545739	.	GAAATGATACA	G	3321.96	PASS	AC=1;AF=0.5;AN=2;DP=8856;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,249:283:99:9670,0,566:21,13,100,149
chr2	44545751	.	TCTG	T	3375.94	PASS	AC=1;AF=0.513;AN=2;DP=7576;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,223:246:99:9823,0,283:14,9,75,148
chr2	44545758	.	C	A	3269.68	PASS	AC=2;AF=0.575;AN=2;DP=7164;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:12,222:234:86:9443,86,0:7,5,76,146
chr2	44545761	.	T	G	3158.76	PASS	AC=2;AF=0.625;AN=2;DP=7031;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:11,214:225:99:9360,158,0:7,4,76,138
chr2	44545764	.	A	ACAG	2975.76	PASS	AC=2;AF=0.625;AN=2;DP=6901;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:10,213:223:99:9315,194,0:6,4,78,135
chr2	44545766	.	A	ATGTATCATTT	2977.56	PASS	AC=2;AF=0.625;AN=2;DP=6729;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:10,206:216:99:9225,227,0:6,4,78,128
chr2	44546016	.	C	T	1256.34	PASS	AC=2;AF=0.813;AN=2;DP=3987;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:4353,354,0:0,0,90,28
chr2	44546741	.	T	C	2800.52	PASS	AC=2;AF=0.797;AN=2;DP=7172;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,232:234:99:7495,652,0:1,1,119,113
chr2	44547131	.	A	G	3844.28	PASS	AC=2;AF=0.797;AN=2;DP=12655;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,458:458:99:13316,1370,0:0,0,219,239
chr2	44547574	.	G	A	2331.79	PASS	AC=2;AF=0.797;AN=2;DP=4442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4899,432,0:0,0,72,72
chr2	44547909	.	T	C	3005.72	PASS	AC=2;AF=0.797;AN=2;DP=8226;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,253:253:99:8190,757,0:0,0,129,124
chr2	44548282	.	T	C	514.42	PASS	AC=2;AF=0.818;AN=2;DP=1510;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1229,114,0:0,0,15,23
chr2	44548613	.	T	C	1188.75	PASS	AC=2;AF=0.797;AN=2;DP=2093;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1913,195,0:0,0,29,36
chr2	44556298	.	T	C	398.92	PASS	AC=2;AF=0.813;AN=2;DP=804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:750,60,0:0,0,3,17
chr2	44559583	.	G	A	1640.04	PASS	AC=1;AF=0.5;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:83,73:156:99:1668,0,2065:44,39,39,34
chr2	44565447	.	A	T	323.09	PASS	AC=2;AF=0.784;AN=2;DP=1010;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:914,84,0:0,0,18,10
chr2	44569474	.	G	A	94.47	PASS	AC=2;AF=0.774;AN=2;DP=842;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:853,60,0:0,0,18,2
chr2	44569700	.	AAAT	A	737.18	PASS	AC=2;AF=0.784;AN=2;DP=2005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3506,238,0:0,0,39,40
chr2	44569739	.	T	TA	146.81	PASS	AC=1;AF=0.605;AN=2;DP=1161;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,32:44:99:588,0,140:3,9,11,21
chr2	44570776	.	C	T	567.13	PASS	AC=2;AF=0.784;AN=2;DP=2263;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2638,249,0:0,0,57,26
chr2	44570804	.	C	A	753.97	PASS	AC=2;AF=0.784;AN=2;DP=3227;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3145,311,0:0,0,66,38
chr2	44573624	.	G	A	257.58	PASS	AC=2;AF=0.774;AN=2;DP=778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:825,66,0:0,0,4,18
chr2	44573658	.	T	C	121.67	PASS	AC=2;AF=0.803;AN=2;DP=341;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,1,7
chr2	44573671	.	G	T	115.73	PASS	AC=2;AF=0.838;AN=2;DP=240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:258,18,0:0,0,0,6
chr2	44588941	.	G	A	839.14	PASS	AC=2;AF=0.784;AN=2;DP=3651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3614,354,0:0,0,64,55
chr2	44617324	.	T	A	662.58	PASS	AC=2;AF=0.813;AN=2;DP=2204;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1830,194,0:0,0,36,29
chr2	44622256	.	A	C	370.16	PASS	AC=2;AF=0.833;AN=2;DP=371;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,1,7
chr2	44858687	.	T	C	650.99	PASS	AC=2;AF=0.764;AN=2;DP=1665;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1543,147,0:0,0,34,15
chr2	44931520	.	C	T	384.1	PASS	AC=1;AF=0.5;AN=2;DP=413;MQ=60;set=variant2-variant8-variant14-variant15-variant18-variant22-variant24-variant27-variant29-variant30-variant32-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:641,0,519:8,13,5,16
chr2	44942384	.	C	G	385.11	PASS	AC=1;AF=0.684;AN=2;DP=1742;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:602,0,839:19,15,16,10
chr2	44993542	.	A	G	779.12	PASS	AC=1;AF=0.5;AN=2;DP=1181;MQ=60;set=variant2-variant8-variant9-variant15-variant18-variant22-variant24-variant27-variant29-variant30-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1446,0,1333:29,20,31,22
chr2	44999603	.	AT	A,ATT	1014.3	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=14333;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:336:99:137,129,35,35
chr2	44999709	.	T	C	3027.33	PASS	AC=1;AF=0.5;AN=2;DP=2314;MQ=60;set=variant2-variant8-variant9-variant15-variant18-variant22-variant24-variant27-variant29-variant30-variant32-variant42	GT:AD:DP:GQ:PL:SB	0/1:123,107:230:99:2919,0,3447:32,91,30,77
chr2	45170153	.	G	A	517.33	PASS	AC=1;AF=0.571;AN=2;DP=1111;MQ=60;set=variant-variant3-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant32-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:843,0,1060:6,28,4,23
chr2	45171842	.	A	G	5168.89	PASS	AC=2;AF=0.953;AN=2;DP=10168;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,311:311:99:8707,931,0:0,0,158,153
chr2	45172449	.	TAAAAA	TAA,T,TAAAA,TAAA,TA	165.18	PASS	AC=2,0,0,0,0;AF=0.3,0.12,0.08,0.08,0.1;AN=2;DP=268;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant38-variant41-variant43	GT:DP:GQ:SB	1/1:15:48:0,0,13,2
chr2	45172485	.	G	A,GA	555.14	PASS	AC=1,0;AF=0.5,0.071;AN=2;DP=562;set=variant-variant3-variant6-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant29-filterInvariant33-variant34-variant37-variant38-variant42-variant43	GT:DP:GQ:SB	0/1:33:99:18,2,13,0
chr2	45172556	.	CT	C	2062.55	PASS	AC=1;AF=0.579;AN=2;DP=2871;MQ=60;set=variant-variant3-variant6-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant32-variant34-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,77:171:99:1791,0,2217:64,30,56,21
chr2	45172925	.	G	A	1500.28	PASS	AC=1;AF=0.553;AN=2;DP=2834;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant15-variant16-variant22-variant24-variant26-variant29-variant30-variant32-variant33-variant35-variant36-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,99:185:99:2432,0,2050:35,51,41,58
chr2	45232686	.	A	C	427.01	PASS	AC=1;AF=0.852;AN=2;DP=1324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:231,0,398:7,5,4,5
chr2	45806963	.	TA	T	84.7	PASS	AC=1;AF=0.5;AN=2;DP=700;MQ=60;set=variant-filterInvariant5-variant6-variant7-variant9-filterInvariant10-filterInvariant13-variant15-variant17-variant20-filterInvariant23-filterInvariant24-variant25-variant28-variant31-variant32-variant34-variant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:189,0,415:12,9,6,5
chr2	45879610	.	A	G	441.08	PASS	AC=2;AF=0.864;AN=2;DP=742;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:894,78,0:0,0,7,19
chr2	46203796	.	G	C,A	2418.97	PASS	AC=1,0;AF=0.449,0.256;AN=2;DP=2485;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:68:99:9,24,11,24
chr2	46232042	.	A	C	193.52	PASS	AC=1;AF=0.8;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:280,0,142:1,3,1,7
chr2	46234568	.	A	G	1065.32	PASS	AC=1;AF=0.6;AN=2;DP=2413;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant11-variant12-variant15-variant16-variant19-variant26-variant27-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,70:157:99:1600,0,2155:50,37,42,28
chr2	46237446	.	C	A	634.59	PASS	AC=1;AF=0.575;AN=2;DP=1445;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant10-variant13-variant14-variant15-variant17-variant21-variant22-variant24-variant28-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,29:76:99:681,0,1286:33,14,20,9
chr2	46237530	.	G	A	1545.19	PASS	AC=1;AF=0.5;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant3-variant15	GT:AD:DP:GQ:PL:SB	0/1:61,53:114:99:1146,0,1495:33,28,27,26
chr2	46238244	.	A	G	1757.73	PASS	AC=2;AF=0.93;AN=2;DP=1271;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1248,99,0:0,0,5,28
chr2	46378419	.	TACACACAC	TACACACACAC,TACACAC,TACAC,TAC,TACACACACACAC,TACACACACACACAC,T,TACACACACACACACAC	491.57	PASS	AC=1,0,0,0,0,0,0,0;AF=0.288,0.063,0.2,0.088,0.05,0.038,0.075,0.013;AN=2;DP=1964;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:31:99:2,7,7,15
chr2	46414944	.	AT	ATT,A	2003.2	PASS	AC=2,0;AF=0.607,0.018;AN=2;DP=2896;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant42	GT:DP:GQ:SB	1/1:112:21:10,5,53,44
chr2	46583235	.	C	A	123.2	PASS	AC=2;AF=0.703;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:536,42,0:0,0,11,3
chr2	46583278	.	C	CG	658.5	PASS	AC=1;AF=0.661;AN=2;DP=507;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:535,0,235:6,1,11,3
chr2	46583279	.	C	CT	402.49	PASS	AC=1;AF=0.673;AN=2;DP=473;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:535,0,235:6,1,11,3
chr2	46583281	.	C	CCT,T,CT	598.88	PASS	AC=1,1,0;AF=0.023,0.545,0.091;AN=2;DP=383;MQ=60;set=variant15-variant18-variant19-variant20-variant21-variant22-variant2-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42	GT:DP:GQ:SB	1/2:18:62:0,0,13,5
chr2	46583593	.	G	A	92.8	PASS	AC=1;AF=0.643;AN=2;DP=600;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:378,0,590:11,9,6,5
chr2	46584059	.	T	G	272.24	PASS	AC=1;AF=0.5;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant14-variant15-variant24-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:499,0,322:1,9,3,12
chr2	46612326	.	GTT	G,GT	10765.4	PASS	AC=1,0;AF=0.683,0.134;AN=2;DP=16130;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:373:99:89,87,96,101
chr2	46707378	.	C	G	274.36	PASS	AC=1;AF=0.5;AN=2;DP=38;FractionInformativeReads=1;MQ=60;set=variant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:303,0,156:4,2,5,5
chr2	46746302	.	C	T	395.82	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.193;FractionInformativeReads=1;MQ=60;MQRankSum=1.195;QD=9.65;ReadPosRankSum=-2.141;SOR=0.509;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:424,0,537:14,9,10,8
chr2	46746682	.	A	G	8460.03	PASS	AC=2;AF=0.93;AN=2;DP=7418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,216:216:99:6974,647,0:0,0,127,89
chr2	46746745	.	G	A	11580.4	PASS	AC=2;AF=0.672;AN=2;DP=8437;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,354:354:99:11081,1060,0:0,0,204,150
chr2	46763587	.	G	A	258.91	PASS	AC=2;AF=0.815;AN=2;DP=187;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:268,21,0:0,0,4,3
chr2	46768543	.	A	C	722.33	PASS	AC=2;AF=0.893;AN=2;DP=2312;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1365,144,0:0,0,26,22
chr2	46768559	.	G	A	389.92	PASS	AC=2;AF=0.667;AN=2;DP=1195;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant25-variant30-variant33-variant35-variant38-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1308,137,0:0,0,25,21
chr2	46769334	.	ATTT	ATTTTT,AT,ATT,A,ATTTT,ATTTTTT	145.78	PASS	AC=0,1,0,0,0,0;AF=0.173,0.077,0.385,0.019,0.019,0.019;AN=2;DP=386;set=variant8-variant9-variant11-variant13-variant14-filterInvariant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:18:76:9,5,2,2
chr2	46771134	.	G	C	1177.9	PASS	AC=2;AF=0.857;AN=2;DP=1735;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1654,138,0:0,0,10,36
chr2	46808168	.	C	T	425.17	PASS	AC=1;AF=0.545;AN=2;DP=330;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant15-variant18-variant19-variant25-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:423,0,361:5,9,5,10
chr2	46844082	.	A	AG	896.71	PASS	AC=2;AF=1;AN=2;DP=1698;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2015,156,0:0,0,33,16
chr2	46844219	.	C	CG	2799.65	PASS	AC=2;AF=1;AN=2;DP=3988;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4928,397,0:0,0,66,65
chr2	46852120	.	CT	C,CTT	2003.78	PASS	AC=1,0;AF=0.477,0.023;AN=2;DP=15054;set=Intersection	GT:DP:GQ:SB	0/1:326:99:73,95,73,85
chr2	46852210	.	GTT	GT,G	539.83	PASS	AC=1,0;AF=0.456,0.044;AN=2;DP=4717;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-filterInvariant15-filterInvariant16-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:104:99:19,46,8,31
chr2	46926064	.	C	G	287.2	PASS	AC=2;AF=0.662;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:952,90,0:0,0,19,11
chr2	46926719	.	G	C	94.75	PASS	AC=2;AF=0.632;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:423,39,0:0,0,5,8
chr2	46987139	.	G	A	1022.29	PASS	AC=1;AF=0.5;AN=2;DP=800;MQ=60;set=variant10-variant15-variant25-variant29-variant35-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:54,43:97:99:1173,0,1361:20,34,18,25
chr2	46987300	.	T	G	493.51	PASS	AC=2;AF=0.613;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:447,30,0:0,0,0,10
chr2	46987935	.	T	G	11097.7	PASS	AC=1;AF=0.567;AN=2;DP=9572;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,174:364:99:3882,0,4522:97,93,89,85
chr2	47044277	.	C	T	724.79	PASS	AC=1;AF=0.571;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:531,0,361:9,3,12,5
chr2	47045267	.	G	A	1257.66	PASS	AC=2;AF=0.671;AN=2;DP=1490;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1573,141,0:0,0,33,14
chr2	47045309	.	C	T	3112.23	PASS	AC=1;AF=0.571;AN=2;DP=2118;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1101,0,901:23,15,26,16
chr2	47048969	.	T	C	329.76	PASS	AC=2;AF=0.714;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:452,36,0:0,0,8,4
chr2	47048980	.	A	T	290.05	PASS	AC=1;AF=0.583;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant23-variant30-variant32-variant35-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:275,0,223:5,2,7,2
chr2	47049409	.	C	T	2447.94	PASS	AC=1;AF=0.597;AN=2;DP=3020;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,50:110:99:1239,0,1474:22,38,20,30
chr2	47049453	.	A	G	2094.06	PASS	AC=2;AF=0.692;AN=2;DP=3088;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2743,251,0:0,0,39,45
chr2	47081092	.	C	T	894.82	PASS	AC=2;AF=0.786;AN=2;DP=5155;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4921,479,0:0,0,67,93
chr2	47081196	.	C	G	215.96	PASS	AC=1;AF=0.571;AN=2;DP=587;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant23-variant26-variant28-variant29-variant32-variant33-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:538,0,524:3,15,2,15
chr2	47083030	.	ATG	A	232.73	PASS	AC=2;AF=0.824;AN=2;DP=308;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:200,21,0:0,0,5,2
chr2	47083041	.	TA	T	577.14	PASS	AC=1;AF=0.675;AN=2;DP=264;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant22-variant24-variant25-variant26-variant28-variant30-variant33-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:185,0,128:5,1,7,1
chr2	47083044	.	A	T	586.27	PASS	AC=2;AF=0.861;AN=2;DP=524;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:638,45,0:0,0,13,2
chr2	47083252	.	G	T	766.42	PASS	AC=1;AF=0.6;AN=2;DP=1296;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,33:58:99:885,0,619:9,16,12,21
chr2	47085398	.	C	T	223.27	PASS	AC=2;AF=0.781;AN=2;DP=557;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:735,54,0:0,0,4,14
chr2	47128925	.	A	G	190.63	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:219,0,392:10,1,6,0
chr2	47128954	.	G	T	417.23	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:481,0,615:16,5,15,5
chr2	47129502	.	G	C	3192.02	PASS	AC=1;AF=0.5;AN=2;DP=579;MQ=60;set=variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:105,105:210:99:3220,0,2813:61,44,64,41
chr2	47129944	.	G	A	1700.82	PASS	AC=1;AF=0.5;AN=2;DP=404;MQ=60;set=variant7-variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:67,56:123:99:1428,0,2025:34,33,31,25
chr2	47132856	.	G	A	3383.44	PASS	AC=1;AF=0.5;AN=2;DP=595;set=variant7-variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:74,81:155:99:2597,0,2511:44,30,47,34
chr2	47132945	.	G	T	2501.98	PASS	AC=1;AF=0.625;AN=2;DP=5743;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant26-variant27-variant28-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,127:288:99:3096,0,4135:85,76,63,64
chr2	47133055	.	T	C	3275.17	PASS	AC=1;AF=0.588;AN=2;DP=4344;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant13-variant15-variant18-variant20-variant23-variant25-variant30-variant32-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:130,168:298:99:4287,0,3262:60,70,83,85
chr2	47134904	.	G	A	723.98	PASS	AC=1;AF=0.5;AN=2;DP=234;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:467,0,910:21,11,14,9
chr2	47135246	.	A	G	424.15	PASS	AC=1;AF=0.5;AN=2;DP=156;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:432,0,573:7,13,3,12
chr2	47142950	.	GCCCCCCCCC	GCCCC,G,GCCCCCC,GCCCCC,GCCCCCCC,GCCCCCCCC	171.55	PASS	AC=0,2,0,0,0,0;AF=0.117,0.433,0.083,0.1,0.05,0.017;AN=2;DP=1130;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant41-variant43	GT:DP:GQ:SB	2/2:54:73:0,2,26,26
chr2	47143230	.	G	T	990.64	PASS	AC=1;AF=0.591;AN=2;DP=989;MQ=60;set=variant2-variant3-variant7-variant8-variant15-variant18-variant20-variant23-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,59:112:99:1489,0,1331:23,30,31,28
chr2	47144203	.	C	G	341.29	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:436,0,588:11,11,11,7
chr2	47144394	.	C	G	537.85	PASS	AC=1;AF=0.5;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:566,0,734:17,10,10,13
chr2	47168533	.	CGCCGCCCGGGCCCCCGCT	C	560.52	PASS	AC=1;AF=0.5;AN=2;DP=138;MQ=60;set=variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:36,17:53:99:598,0,5936:22,14,10,7
chr2	47168892	.	G	C	3495.56	PASS	AC=1;AF=0.5;AN=2;DP=690;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:124,133:257:99:3524,0,3097:49,75,47,86
chr2	47169003	.	C	T	962.35	PASS	AC=1;AF=0.563;AN=2;DP=764;MQ=60;set=variant5-variant7-variant9-variant13-variant15-variant20-variant32-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1234,0,1357:20,30,14,29
chr2	47169099	.	A	C	645.71	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:674,0,643:10,18,8,17
chr2	47177787	.	G	T	773.91	PASS	AC=1;AF=0.577;AN=2;DP=646;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:441,0,732:0,19,2,12
chr2	47179063	.	C	T	388.73	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant20-variant32	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:822,0,858:5,22,6,20
chr2	47183650	.	T	C	43.48	PASS	AC=2;AF=0.838;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:524,42,0:0,0,12,2
chr2	47201797	.	A	T	599.09	PASS	AC=2;AF=0.821;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1016,114,0:0,0,24,14
chr2	47201991	.	CT	C	717.83	PASS	AC=1;AF=0.62;AN=2;DP=397;MQ=60;set=variant3-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:453,0,213:3,4,8,5
chr2	47220285	.	T	G	127.41	PASS	AC=1;AF=0.625;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant8-variant11-variant14-variant15-variant17-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,10:11:13:336,0,13:1,0,7,3
chr2	47220448	.	C	CT	1074.68	PASS	AC=1;AF=0.605;AN=2;DP=1606;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,46:88:99:1453,0,1303:25,17,25,21
chr2	47220622	.	G	A	1363.32	PASS	AC=1;AF=0.605;AN=2;DP=2587;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,53:124:99:1287,0,1696:33,38,22,31
chr2	47221693	.	A	G	429.54	PASS	AC=1;AF=0.605;AN=2;DP=1451;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:841,0,1004:11,23,11,22
chr2	47222001	.	T	C	51.2	PASS	AC=1;AF=0.625;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant25-variant26-variant29-variant31-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:140,0,160:4,1,3,1
chr2	47238383	.	C	A	2250.9	PASS	AC=1;AF=0.5;AN=2;DP=898;MQ=60;set=variant15-variant17-variant26-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:92,93:185:99:2279,0,2378:54,38,55,38
chr2	47248833	.	A	G	223.55	PASS	AC=1;AF=0.5;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant17-variant26-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:753,0,872:12,3,13,6
chr2	47248834	.	A	C	223.55	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant15-variant17-variant26-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:753,0,872:12,3,13,6
chr2	47251510	.	G	C	1151.44	PASS	AC=1;AF=0.531;AN=2;DP=2739;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant15-variant23-variant26-variant28-variant29-variant33-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,110:195:99:2732,0,1949:43,42,54,56
chr2	47251634	.	T	C	1454.14	PASS	AC=1;AF=0.632;AN=2;DP=3488;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1542,0,1232:17,34,20,36
chr2	47251698	.	T	C	146.42	PASS	AC=1;AF=0.529;AN=2;DP=575;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant15-variant17-variant23-variant26-variant28-variant29-variant33-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:743,0,442:3,12,3,20
chr2	47273732	.	G	A	237.08	PASS	AC=1;AF=0.528;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant10-variant15-variant17-variant23-variant26-variant28-variant29-variant33-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:184,0,215:1,6,2,5
chr2	47301386	.	A	G	2741.19	PASS	AC=2;AF=1;AN=2;DP=3959;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3730,350,0:0,0,57,60
chr2	47301624	.	T	TTGGGGCCTC	2690.3	PASS	AC=2;AF=0.838;AN=2;DP=2490;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:4055,284,0:0,0,45,41
chr2	47301744	.	T	C	2659.31	PASS	AC=2;AF=0.833;AN=2;DP=3928;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3760,359,0:0,0,61,59
chr2	47302095	.	T	C	3824.36	PASS	AC=2;AF=0.805;AN=2;DP=4704;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,120:121:99:3725,351,0:1,0,60,60
chr2	47302829	.	C	G	3237.32	PASS	AC=2;AF=0.841;AN=2;DP=3429;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2948,276,0:0,0,40,52
chr2	47314052	.	T	C	1321.99	PASS	AC=2;AF=0.93;AN=2;DP=1384;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:939,93,0:0,0,19,12
chr2	47348347	.	C	T	3276.35	PASS	AC=2;AF=0.826;AN=2;DP=5659;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4403,462,0:0,0,78,77
chr2	47357458	.	A	G	1952.46	PASS	AC=2;AF=0.849;AN=2;DP=3566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3206,326,0:0,0,47,62
chr2	47357564	.	A	T	297.18	PASS	AC=1;AF=0.779;AN=2;DP=393;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:464,0,288:0,8,1,12
chr2	47380145	.	T	C	1170.4	PASS	AC=1;AF=0.5;AN=2;DP=588;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant24-variant27-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:657,0,837:17,19,14,16
chr2	47380203	.	T	C	1472.2	PASS	AC=1;AF=0.802;AN=2;DP=1897;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:535,0,509:9,14,11,14
chr2	47380305	.	C	T	232.43	PASS	AC=1;AF=0.5;AN=2;DP=105;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant15-variant19-variant24-variant27-variant29-variant34	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:195,0,143:1,4,2,5
chr2	47382214	.	C	G	2567.71	PASS	AC=2;AF=0.989;AN=2;DP=3435;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3699,321,0:0,0,71,36
chr2	47382579	.	C	T	705.17	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:733,0,918:5,25,3,21
chr2	47382606	.	T	A	499.66	PASS	AC=2;AF=0.738;AN=2;DP=984;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1361,111,0:0,0,5,32
chr2	47387187	.	T	C	2196.59	PASS	AC=1;AF=0.5;AN=2;DP=1626;MQ=60;set=variant3-variant6-variant13-variant14-variant15-variant19-variant24-variant27-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:83,85:168:99:2420,0,2198:49,34,52,33
chr2	47387989	.	CAAAAAAA	CAA,CAAAA,CAAA,C,CAAAAA,CA	102.27	PASS	AC=0,2,0,0,0,0;AF=0.239,0.065,0.304,0.065,0.022,0.022;AN=2;DP=329;set=variant-variant3-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:7:11:0,1,4,2
chr2	47388844	.	T	C	194.06	PASS	AC=1;AF=0.5;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:222,0,303:8,3,6,2
chr2	47390026	.	C	T	193.54	PASS	AC=1;AF=0.78;AN=2;DP=152;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,162:0,4,0,3
chr2	47399415	.	G	A	585.46	PASS	AC=1;AF=0.545;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant15-variant22-variant26-variant28-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:601,0,389:11,5,15,9
chr2	47399601	.	A	G	758.57	PASS	AC=1;AF=0.5;AN=2;DP=635;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant24-variant27-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:36,42:78:99:969,0,821:14,22,18,24
chr2	47403383	.	G	T	170.35	PASS	AC=1;AF=0.5;AN=2;DP=219;MQ=60;set=variant3-variant6-variant13-variant15-variant19-variant24-variant27-variant29-variant34-variant35	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:303,0,187:5,1,7,2
chr2	47572363	.	G	C	1036.29	PASS	AC=1;AF=0.591;AN=2;DP=532;MQ=60;set=variant2-variant4-variant15-variant17-variant20-variant23-variant25-variant30-variant31-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,22:61:99:433,0,896:17,22,10,12
chr2	47601106	.	T	C	2991.84	PASS	AC=2;AF=0.704;AN=2;DP=3395;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4782,485,0:0,0,76,86
chr2	47601257	.	T	C	1286.27	PASS	AC=1;AF=0.667;AN=2;DP=555;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant25-variant30-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,50:102:99:1315,0,1226:27,25,26,24
chr2	47601407	.	A	G	704.9	PASS	AC=1;AF=0.643;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant25-variant30-variant31-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:733,0,647:6,18,5,19
chr2	47604118	.	A	AT	677.14	PASS	AC=1;AF=0.5;AN=2;DP=293;MQ=60;set=variant15-variant23-variant25-variant31-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:714,0,769:22,12,22,9
chr2	47604148	.	T	C	1507.59	PASS	AC=1;AF=0.5;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant25-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,57:106:99:1536,0,1131:29,20,39,18
chr2	47604866	.	C	T	478.61	PASS	AC=1;AF=0.5;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant25-variant30-variant31-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:507,0,469:9,8,7,9
chr2	47605097	.	C	T	65.72	PASS	AC=1;AF=0.625;AN=2;DP=151;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant7-variant12-variant15-variant17-variant26-variant30-variant33-variant34-variant35-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:192,0,116:2,4,2,5
chr2	47612224	.	C	T	376.47	PASS	AC=1;AF=0.614;AN=2;DP=935;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:502,0,800:20,10,13,8
chr2	47613870	.	T	C	10006.5	PASS	AC=1;AF=0.583;AN=2;DP=3715;MQ=60;set=variant5-variant7-variant10-variant12-variant15-variant26-variant28-variant30-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:197,210:407:99:5496,0,4853:114,83,117,93
chr2	47630213	.	T	C	1308.47	PASS	AC=1;AF=0.577;AN=2;DP=595;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant10-variant11-variant12-variant15-variant26-variant28-variant30-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:1036,0,804:20,11,20,15
chr2	47630550	.	C	G	1273.69	PASS	AC=2;AF=0.673;AN=2;DP=1600;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2992,264,0:0,0,30,58
chr2	47641559	.	TAAAAAA	TAAA,TAAAAA,T,TAAAA,TA,TAA	280.44	PASS	AC=0,0,0,1,1,0;AF=0.155,0.052,0.034,0.19,0.086,0.138;AN=2;DP=1123;set=variant-variant2-variant3-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	5/4:30:99:1,5,11,13
chr2	47656801	.	G	A	97.98	PASS	AC=2;AF=0.806;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant15-variant16-variant17-variant18-variant21-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:169,15,0:0,0,2,3
chr2	47672569	.	G	A	770.47	PASS	AC=2;AF=0.757;AN=2;DP=596;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:706,51,0:0,0,16,1
chr2	47690404	.	T	C	739.62	PASS	AC=2;AF=0.63;AN=2;DP=969;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1522,102,0:0,0,11,23
chr2	47690408	.	A	G	742.62	PASS	AC=1;AF=0.619;AN=2;DP=724;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:578,0,283:6,7,5,15
chr2	47690411	.	T	C	646.46	PASS	AC=2;AF=0.63;AN=2;DP=897;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1485,99,0:0,0,9,22
chr2	47693706	.	G	T	251.06	PASS	AC=1;AF=0.636;AN=2;DP=512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:277,0,677:16,5,8,3
chr2	47693788	.	A	T	2076.73	PASS	AC=1;AF=0.611;AN=2;DP=645;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant12-variant15-variant30-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,41:93:99:874,0,1208:28,24,24,17
chr2	47693959	.	G	A	401.51	PASS	AC=1;AF=0.643;AN=2;DP=387;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant26-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:217,0,322:1,9,2,6
chr2	47698308	.	A	G	1146.65	PASS	AC=1;AF=0.636;AN=2;DP=1779;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:1010,0,1211:23,25,18,23
chr2	47698384	.	G	A	786.36	PASS	AC=2;AF=0.64;AN=2;DP=1540;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,71:73:99:2173,169,0:1,1,29,42
chr2	47702052	.	T	TAGG	179	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0;MQ=60;set=variant15-variant23-variant25-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:216,0,420:8,1,5,0
chr2	47702102	.	G	A	311.54	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant25-variant31-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:340,0,923:23,5,9,6
chr2	47703379	.	C	T	585.83	PASS	AC=2;AF=0.989;AN=2;DP=511;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.37;ReadPosRankSum=-1.664;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:740,54,0:0,0,17,1
chr2	47739551	.	A	G	1176.22	PASS	AC=2;AF=0.7;AN=2;DP=3212;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3636,333,0:0,0,54,57
chr2	47740198	.	G	T	132.55	PASS	AC=2;AF=0.694;AN=2;DP=1027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1114,96,0:0,0,11,21
chr2	47748292	.	A	G	6293.49	PASS	AC=1;AF=0.717;AN=2;DP=5041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:118,85:203:99:2210,0,3172:59,59,43,42
chr2	47749020	.	T	G	255.37	PASS	AC=1;AF=0.5;AN=2;DP=106;set=variant4-variant11-filterInvariant15-variant19	GT:AD:DP:GQ:PL:SB	0/1:23,5:28:59:59,0,877:9,14,0,5
chr2	47798037	.	A	G	656.51	PASS	AC=1;AF=0.658;AN=2;DP=2085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:848,0,780:9,20,13,21
chr2	48010488	.	G	A	2407.38	PASS	AC=1;AF=0.536;AN=2;DP=2760;MQ=60;set=variant-variant2-variant4-variant5-variant11-variant14-variant15-variant21-variant22-variant23-variant24-variant28-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:121,140:261:99:3258,0,2898:54,67,66,74
chr2	48016314	.	T	C	394.37	PASS	AC=1;AF=0.63;AN=2;DP=601;set=variant3-variant6-variant7-variant9-variant12-variant15-variant19-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:485,0,396:10,5,12,6
chr2	48018314	.	T	A	518.92	PASS	AC=1;AF=0.636;AN=2;DP=559;set=variant3-variant6-variant7-variant9-variant12-variant15-variant19-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,6:28:99:148,0,681:6,16,0,6
chr2	48022900	.	A	G	34.46	PASS	AC=2;AF=0.821;AN=2;DP=368;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:638,51,0:0,0,13,4
chr2	48022981	.	G	T	352.66	PASS	AC=1;AF=0.542;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant11-variant14-variant15-variant21-variant22-variant24-variant28-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:364,0,740:15,12,9,7
chr2	48030435	.	G	C	306.08	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=1.922;FractionInformativeReads=1;MQ=60;MQRankSum=1.042;QD=15.3;ReadPosRankSum=-1.35;SOR=1.329;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:334,0,184:5,3,9,3
chr2	48030458	.	G	C	497.3	PASS	AC=2;AF=0.774;AN=2;DP=1660;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1277,120,0:0,0,27,13
chr2	48032740	.	AT	ATT,A	773.8	PASS	AC=1,0;AF=0.472,0.028;AN=2;DP=1073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant11-variant14-variant15-variant18-variant21-variant22-variant24-variant27-variant28-variant32-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:74:99:18,14,23,19
chr2	48032874	.	ACTAT	A	1073.15	PASS	AC=2;AF=0.738;AN=2;DP=2321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,48:50:61:2018,61,0:1,1,19,29
chr2	48032937	.	T	C	410.43	PASS	AC=2;AF=0.762;AN=2;DP=908;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:577,39,0:0,0,0,13
chr2	48033551	.	C	G	1714.99	PASS	AC=2;AF=0.774;AN=2;DP=5220;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4912,487,0:0,0,76,87
chr2	48033890	.	CTTT	CTT,CTTCTTTT,CT,C	367.34	PASS	AC=1,0,1,0;AF=0.446,0.014,0.095,0.027;AN=2;DP=1624;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	3/1:51:99:2,2,26,21
chr2	48034806	.	TA	T	778.96	PASS	AC=2;AF=0.726;AN=2;DP=3626;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,98:99:99:2681,275,0:0,1,32,66
chr2	48040564	.	ATTTTT	ATTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTTTTTTT,ATTTTTTTTTTT,ATTTTTTTTTT,ATTTTTTTTT,ATTT,A,ATTTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTT,ATTTTTTTTTTTTT,ATTTTTTT,ATTTTTTTTTTTT	34.52	PASS	AC=0,0,0,2,0,0,0,0,0,0,0,0;AF=0.067,0.033,0.033,0.067,0.167,0.033,0.033,0.067,0.033,0.1,0.067,0.033;AN=2;DP=238;FS=0;set=variant2-variant7-variant9-variant15-variant16-variant17-variant21-variant23-filterInvariant24-variant27-variant28-variant29-variant36-variant38-variant41	GT:DP:GQ:SB	4/4:6:17:0,0,0,6
chr2	48040904	.	G	GA	1724.48	PASS	AC=2;AF=0.966;AN=2;DP=3270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2799,274,0:0,0,48,42
chr2	48047335	.	A	G	74.64	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant25-variant29-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:158,0,313:8,3,5,2
chr2	48050605	.	C	CTT	322.54	PASS	AC=1;AF=0.5;AN=2;DP=79;MQ=60;set=variant9-variant15-variant25-variant29-variant33-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:276,0,264:1,5,3,4
chr2	48115716	.	C	A	1032.87	PASS	AC=1;AF=0.5;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:62,74:136:99:1828,0,1538:38,24,44,30
chr2	48115942	.	T	C	1002.6	PASS	AC=1;AF=0.5;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant25-variant29-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:833,0,1376:7,16,5,18
chr2	48115952	.	T	C	898.43	PASS	AC=1;AF=0.5;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant25-variant29-variant34-variant38	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:846,0,1379:7,16,5,16
chr2	48132541	.	CCCCG	C	52.73	PASS	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=60;QD=26.37;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr2	48589683	.	G	A	453.54	PASS	AC=1;AF=0.5;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant11-variant14-variant15-variant17-variant22-variant24-variant28-variant29-variant37	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:529,0,722:19,8,13,12
chr2	48605827	.	AT	A	258.11	PASS	AC=1;AF=0.5;AN=2;DP=7764;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:150,35:185:99:247,0,3046:61,89,16,19
chr2	48667951	.	CGCG	C,CGCGGCG,CGCGGCGGCG	49.18	PASS	AC=1,0,0;AF=0.313,0.125,0.104;AN=2;DP=1618;MQ=60;set=filterInvariant3-variant7-variant8-filterInvariant9-variant10-variant12-variant14-filterInvariant15-filterInvariant16-variant18-variant19-variant22-variant23-variant24-filterInvariant26-filterInvariant28-variant30-variant31-filterInvariant32-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:100:99:63,28,7,2
chr2	48688258	.	AT	A,ATT	133.84	PASS	AC=1,0;AF=0.455,0.045;AN=2;DP=1532;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant11-filterInvariant12-variant13-filterInvariant15-filterInvariant16-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant39-variant40-filterInvariant41-variant43	GT:DP:GQ:SB	0/1:97:98:39,42,9,7
chr2	48689053	.	A	G	200.09	PASS	AC=1;AF=0.5;AN=2;DP=91;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant10-variant15-variant16-variant21-variant26-variant27-variant28	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:94:94,0,159:4,0,3,0
chr2	48722755	.	T	C	474.9	PASS	AC=1;AF=0.622;AN=2;DP=946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:382,0,410:10,4,9,6
chr2	48725610	.	C	T	428.25	PASS	AC=1;AF=0.647;AN=2;DP=1174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:803,0,532:15,6,21,5
chr2	48734576	.	G	A	3573.46	PASS	AC=2;AF=1;AN=2;DP=5858;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5725,533,0:0,0,56,122
chr2	48738388	.	C	T	441.06	PASS	AC=1;AF=0.567;AN=2;DP=426;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant19-variant21-variant23-variant26-variant27-variant28-variant36	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:655,0,387:9,4,17,4
chr2	48738687	.	G	C	987.81	PASS	AC=2;AF=0.821;AN=2;DP=1103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:926,72,0:0,0,3,21
chr2	48742355	.	TTCTC	TTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTC,TTC,T,TTCTCTCTC,TTCTCTCTCTCTCTCTC	303.54	PASS	AC=0,0,0,2,0,0,0,0,0;AF=0.05,0.263,0.038,0.275,0.138,0.138,0.013,0.013,0.038;AN=2;DP=801;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:5:20:0,0,3,2
chr2	48757257	.	T	TTCCTCCGCCTCC	340.25	PASS	AC=1;AF=0.542;AN=2;DP=220;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant19-variant21-variant26-variant27-variant28	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:348,0,1016:5,7,1,5
chr2	48757288	.	C	T	710.45	PASS	AC=1;AF=0.55;AN=2;DP=460;set=variant4-variant5-variant8-variant10-variant15-variant16-variant19-variant21-variant2-variant27	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:556,0,1357:13,12,9,13
chr2	48808594	.	C	T	3029.91	PASS	AC=1;AF=0.689;AN=2;DP=6069;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,91:174:99:2361,0,2179:41,42,40,51
chr2	48809593	.	G	T	1297.05	PASS	AC=1;AF=0.679;AN=2;DP=4238;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,73:132:99:1884,0,1387:29,30,41,32
chr2	48822381	.	G	A	3083.26	PASS	AC=2;AF=0.7;AN=2;DP=3236;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3270,326,0:0,0,63,47
chr2	48824650	.	G	A	913.59	PASS	AC=1;AF=0.611;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant11-variant14-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:952,0,770:9,6,16,8
chr2	48824652	.	T	C	913.59	PASS	AC=1;AF=0.611;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant11-variant14-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:952,0,770:9,6,16,8
chr2	48824698	.	T	C	572.71	PASS	AC=1;AF=0.611;AN=2;DP=791;MQ=60;set=variant2-variant5-variant7-variant11-variant14-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,31:49:99:902,0,438:12,6,21,10
chr2	48825139	.	A	C	745.81	PASS	AC=1;AF=0.611;AN=2;DP=1138;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant11-variant14-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,58:104:99:1596,0,1229:26,20,39,19
chr2	48825650	.	C	G	2039.25	PASS	AC=1;AF=0.708;AN=2;DP=1776;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:580,0,888:3,22,1,16
chr2	48844968	.	C	G	4131.71	PASS	AC=2;AF=0.798;AN=2;DP=6225;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5142,515,0:0,0,88,84
chr2	48873978	.	A	G	3803.74	PASS	AC=1;AF=0.643;AN=2;DP=2673;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant15-variant17-variant18-variant21-variant22-variant26-variant27-variant28-variant33-variant35-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,60:135:99:1561,0,1853:37,38,22,38
chr2	48898798	.	T	A	5296.32	PASS	AC=2;AF=0.966;AN=2;DP=6359;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:4861,494,0:0,0,79,86
chr2	48906625	.	T	C	6068.09	PASS	AC=2;AF=0.966;AN=2;DP=7615;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:5904,582,0:0,0,95,99
chr2	48915871	.	A	G	4141.44	PASS	AC=2;AF=0.789;AN=2;DP=4793;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4421,423,0:0,0,66,75
chr2	48921375	.	T	C	2119.41	PASS	AC=2;AF=0.789;AN=2;DP=2980;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3470,348,0:0,0,66,50
chr2	48925746	.	C	T	1328.99	PASS	AC=2;AF=0.857;AN=2;DP=2311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1987,177,0:0,0,32,27
chr2	48925986	.	ATT	AT,A	102.15	PASS	AC=2,0;AF=0.963,0.024;AN=2;DP=614;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:17:51:0,0,5,12
chr2	48948707	.	A	C	4666.41	PASS	AC=2;AF=0.621;AN=2;DP=10170;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,465:466:99:14034,1350,0:1,0,232,233
chr2	48952701	.	C	G	452.97	PASS	AC=2;AF=1;AN=2;DP=423;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:356,27,0:0,0,8,1
chr2	48956417	.	C	T	683.42	PASS	AC=1;AF=0.5;AN=2;DP=588;MQ=60;set=variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:712,0,1109:16,23,14,17
chr2	49003566	.	C	T	915.34	PASS	AC=1;AF=0.5;AN=2;DP=789;MQ=60;set=variant13-variant15-variant16-variant21-variant23-variant24-variant33-variant34-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1100,0,1106:15,27,18,25
chr2	49189921	.	C	T	2176.63	PASS	AC=1;AF=0.629;AN=2;DP=5266;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,109:219:99:2821,0,2784:49,61,46,63
chr2	49191041	.	C	T	901.78	PASS	AC=1;AF=0.632;AN=2;DP=2200;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:905,0,1065:12,25,11,20
chr2	49215977	.	G	A	533.84	PASS	AC=1;AF=0.774;AN=2;DP=1256;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,8:32:99:162,0,799:19,5,6,2
chr2	49216284	.	C	T	230.15	PASS	AC=1;AF=0.762;AN=2;DP=787;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:326,0,553:1,13,0,9
chr2	49241849	.	G	A	435.87	PASS	AC=1;AF=0.667;AN=2;DP=798;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:399,0,301:8,2,11,0
chr2	49244559	.	A	G	2571.16	PASS	AC=1;AF=0.569;AN=2;DP=2122;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,52:77:99:1531,0,546:16,9,34,18
chr2	49286879	.	C	A	1072.29	PASS	AC=1;AF=0.537;AN=2;DP=2551;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,46:99:99:997,0,1198:25,28,21,25
chr2	49381585	.	C	T	151.64	PASS	AC=1;AF=0.5;AN=2;DP=518;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant11-variant15-variant18-variant20-variant23-variant29-variant33-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:607,0,455:5,12,9,14
chr2	49381696	.	CTTTT	CT,CTTT,CTT,CTTTTT,C	152.26	PASS	AC=1,0,0,0,0;AF=0.278,0.222,0.019,0.019,0.019;AN=2;DP=548;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-filterInvariant27-variant28-variant29-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:18:99:3,6,3,6
chr2	49509859	.	C	CT	153.76	PASS	AC=1;AF=0.56;AN=2;DP=657;MQ=60;set=variant-variant2-variant5-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:11,23:34:99:624,0,248:8,3,14,9
chr2	49510173	.	A	C	1368.24	PASS	AC=2;AF=0.58;AN=2;DP=2273;MQ=60;set=variant-variant2-variant5-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3013,284,0:0,0,48,47
chr2	50145580	.	G	GT	84.68	PASS	AC=2;AF=0.708;AN=2;DP=118;FS=0;MQ=60;set=variant-variant2-variant8-variant9-variant15-variant20-variant26-variant29-variant33-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:274,27,0:0,0,8,1
chr2	50147171	.	C	A	1407.3	PASS	AC=2;AF=0.611;AN=2;DP=1842;MQ=60;set=variant-variant2-variant8-variant9-variant14-variant15-variant18-variant20-variant26-variant29-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4284,390,0:0,0,46,84
chr2	50147755	.	G	C	3716.46	PASS	AC=2;AF=0.563;AN=2;DP=4062;set=variant-variant2-variant8-variant9-variant14-variant15-variant18-variant20-variant29-variant33-variant35-variant36-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,323:324:99:10147,927,0:0,1,134,189
chr2	50147835	.	CGTGTGTGTGTGTGTGTGT	CGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGTGTGTGTGT,C,CGTGTGT,CGTGTGTGTGTGTGTGTGTGTGT,CGT	2706.54	PASS	AC=1,0,0,0,0,0,1,0,0;AF=0.205,0.159,0.114,0.159,0.057,0.125,0.08,0.011,0.011;AN=2;DP=6065;set=Intersection	GT:DP:GQ:SB	7/1:109:99:0,3,42,64
chr2	50148111	.	A	AAAGT	2571.18	PASS	AC=2;AF=0.633;AN=2;DP=4237;MQ=60;set=variant-variant2-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:7348,493,0:0,0,90,72
chr2	50170729	.	G	C	287.13	PASS	AC=2;AF=0.588;AN=2;DP=303;MQ=60;set=variant-variant2-variant8-variant9-variant14-variant15-variant18-variant20-variant29-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:41:492,41,0:0,0,10,4
chr2	50201110	.	A	G	865.02	PASS	AC=2;AF=0.864;AN=2;DP=4277;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3340,306,0:0,0,60,42
chr2	50201383	.	G	A	278.1	PASS	AC=1;AF=0.6;AN=2;DP=798;MQ=60;set=variant-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:685,0,650:4,18,6,18
chr2	50280283	.	T	C	500.47	PASS	AC=1;AF=0.808;AN=2;DP=543;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:393,0,124:4,1,10,1
chr2	50280338	.	G	A	1185.33	PASS	AC=1;AF=0.784;AN=2;DP=1441;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:801,0,571:15,9,21,8
chr2	50434759	.	C	G	656.74	PASS	AC=2;AF=0.895;AN=2;DP=2454;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2207,233,0:0,0,47,31
chr2	50692459	.	T	A	484.96	PASS	AC=1;AF=0.697;AN=2;DP=1526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,16:46:99:420,0,975:25,5,11,5
chr2	50692819	.	T	G	817.74	PASS	AC=1;AF=0.92;AN=2;DP=1480;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:458,0,632:3,16,5,11
chr2	50693504	.	AAC	A	785.21	PASS	AC=1;AF=0.705;AN=2;DP=2810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,38:83:99:1460,0,1869:24,21,22,16
chr2	50699305	.	T	A	380.51	PASS	AC=1;AF=0.684;AN=2;DP=769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:412,0,186:6,2,10,2
chr2	50733860	.	A	G	612.33	PASS	AC=1;AF=0.989;AN=2;DP=1766;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:406,0,548:7,15,7,10
chr2	50733958	.	T	C	190.09	PASS	AC=1;AF=0.611;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:68:202,0,68:1,2,1,5
chr2	50758657	.	T	C	390.13	PASS	AC=1;AF=0.837;AN=2;DP=1215;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:310,0,531:3,13,0,9
chr2	50858107	.	T	A	1313.63	PASS	AC=1;AF=0.738;AN=2;DP=1764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:864,0,575:16,6,21,14
chr2	50966161	.	G	A	1448.7	PASS	AC=2;AF=0.909;AN=2;DP=1919;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1471,141,0:0,0,27,20
chr2	50966283	.	C	T	3906.35	PASS	AC=2;AF=0.849;AN=2;DP=4764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,125:126:99:3846,336,0:1,0,74,51
chr2	51146150	.	A	AG	14735.5	PASS	AC=1;AF=0.7;AN=2;DP=17078;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:288,211:499:99:5992,0,8676:133,155,88,123
chr2	51191244	.	C	T	276.98	PASS	AC=1;AF=0.5;AN=2;DP=193;MQ=60;set=variant9-variant15-variant16-variant18-variant20-variant22-variant23-variant26-variant27-variant31-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:250,0,434:2,11,1,7
chr2	51206342	.	C	G	626.97	PASS	AC=1;AF=0.636;AN=2;DP=1417;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:1105,0,818:21,10,28,11
chr2	51254478	.	G	A	191.94	PASS	AC=1;AF=0.615;AN=2;DP=921;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,34:47:99:942,0,305:6,7,19,15
chr2	51255692	.	A	G	287.5	PASS	AC=1;AF=0.62;AN=2;DP=1048;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:427,0,566:15,9,9,9
chr2	51255832	.	T	G	478.15	PASS	AC=1;AF=0.62;AN=2;DP=1068;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:346,0,542:7,13,6,9
chr2	51259648	.	AAGAGAGAGAGAGAGAGAGAG	AAGAGAGAGAGAGAGAGAGAGAG,AAGAGAGAGAGAGAGAGAGAGAGAG,AAGAGAGAG,AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG,AAGAGAGAGAGAGAGAG,AAGAGAGAGAGAG,A,AAGAGAGAGAGAGAG	96.51	PASS	AC=2,0,0,0,0,0,0,0;AF=0.15,0.1,0.125,0.025,0.075,0.025,0.125,0.075;AN=2;DP=250;set=variant3-variant4-variant6-variant8-variant13-variant15-variant16-variant17-variant19-variant24-variant27-variant28-variant30-variant32-variant35-variant36-variant37-variant39-variant42-variant43	GT:DP:GQ:SB	1/1:5:14:0,0,0,5
chr2	52929658	.	A	G	96.14	PASS	AC=1;AF=0.667;AN=2;DP=36;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:68:124,0,68:1,1,3,3
chr2	52929780	.	T	G	946.32	PASS	AC=1;AF=0.667;AN=2;DP=976;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant12-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,19:45:99:685,0,1297:13,13,10,9
chr2	52929787	.	A	C	652.33	PASS	AC=1;AF=0.5;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:681,0,1267:13,12,9,9
chr2	53897251	.	A	G	1362.56	PASS	AC=1;AF=0.556;AN=2;DP=1081;FractionInformativeReads=1;set=variant4-variant6-variant15-variant22-variant28-variant29-variant31-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:64,73:137:99:1766,0,1523:31,33,39,34
chr2	53897429	.	ATTTTTTTT	ATTTTTTT,ATTTTTT,ATTTTT,AT,A	1302.24	PASS	AC=1,0,0,0,0;AF=0.266,0.141,0.047,0.031,0.031;AN=2;DP=2877;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-filterInvariant10-filterInvariant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:104:99:25,17,37,25
chr2	54042122	.	AT	A	52.67	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=53;FS=5.463;FractionInformativeReads=0.509;MQ=60;MQRankSum=-0.146;QD=0.99;ReadPosRankSum=1.312;SOR=2.34;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:21,6:27:90:90,0,604:6,15,0,6
chr2	54042132	.	CTTTTTTTTTT	CTTTTTTTT,CTTTTTTTTT,C,CTTTTTTT	99.16	PASS	AC=0,1,0,0;AF=0.192,0.154,0.096,0.135;AN=2;DP=718;set=variant-filterInvariant3-variant6-variant7-variant9-variant10-filterInvariant11-variant12-filterInvariant14-filterInvariant15-variant18-variant19-variant20-variant24-variant25-variant27-filterInvariant29-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:16:51:1,6,0,9
chr2	54122956	.	A	G	419.99	PASS	AC=1;AF=0.711;AN=2;DP=1264;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:436,0,669:7,17,3,12
chr2	54483272	.	C	A	4752.05	PASS	AC=1;AF=0.542;AN=2;DP=2289;set=variant5-variant8-variant11-variant12-variant14-variant15-variant24-variant31-variant34-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,106:209:99:2664,0,2597:44,59,46,60
chr2	54494370	.	A	G	727.63	PASS	AC=2;AF=0.989;AN=2;DP=1318;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.506;ReadPosRankSum=-0.811;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:80:896,80,0:0,0,19,8
chr2	54562012	.	C	A	2072.71	PASS	AC=1;AF=0.618;AN=2;DP=1025;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant11-variant14-variant15-variant16-variant19-variant21-variant25-variant26-variant27-variant29-variant30-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,39:85:99:957,0,1095:26,20,24,15
chr2	54587378	.	C	G	937.13	PASS	AC=1;AF=0.542;AN=2;DP=1289;MQ=60;set=variant12-variant14-variant15-variant18-variant24-variant25-variant31-variant32-variant35-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,60:125:99:1408,0,1528:36,29,28,32
chr2	54587596	.	C	T	4000.05	PASS	AC=1;AF=0.711;AN=2;DP=4204;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,78:143:99:1980,0,1639:37,28,46,32
chr2	54588046	.	G	C	8070.42	PASS	AC=1;AF=0.711;AN=2;DP=9282;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,151:291:99:4110,0,3579:58,82,66,85
chr2	54588512	.	G	A	4144.98	PASS	AC=1;AF=0.571;AN=2;DP=2444;MQ=60;set=variant-variant6-variant14-variant15-variant19-variant21-variant40	GT:AD:DP:GQ:PL:SB	0/1:190,162:352:99:3931,0,4764:81,109,70,92
chr2	54683711	.	T	C	81.17	PASS	AC=1;AF=0.818;AN=2;DP=389;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:320,0,175:5,4,8,7
chr2	54895817	.	AT	A	598.24	PASS	AC=1;AF=0.5;AN=2;DP=938;set=variant3-filterInvariant5-variant7-variant8-filterInvariant9-variant13-variant15-variant16-filterInvariant17-variant21-variant24-variant27-variant28-variant29-variant31-variant33-filterInvariant35-filterInvariant37-variant38-filterInvariant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:213,0,549:17,11,7,6
chr2	54896377	.	A	AT,ATTTT,ATT,ATTT,ATTTTT	3316.09	PASS	AC=2,0,0,0,0;AF=0.364,0.205,0.125,0.284,0.011;AN=2;DP=6478;set=Intersection	GT:DP:GQ:SB	1/1:181:21:9,10,90,72
chr2	55040426	.	A	G	6406.02	PASS	AC=2;AF=0.884;AN=2;DP=8202;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6297,653,0:0,0,101,117
chr2	55043798	.	G	C	282.31	PASS	AC=1;AF=0.636;AN=2;DP=182;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant11-variant15-variant16-variant17-variant20-variant22-variant25-variant26-variant32	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:90:90,0,410:9,2,3,0
chr2	55071101	.	TTGTG	TTGTGTGTGTGTGTG,TTGTGTGTGTGTG,TTG,TTGTGTGTGTGTGTGTGTG,T,TTGTGTGTGTG,TTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTG,TTGTGTG,TTGTGTGTG	1208.79	PASS	AC=0,0,1,0,0,0,0,0,1,0;AF=0.114,0.239,0.25,0.023,0.023,0.114,0.045,0.023,0.034,0.045;AN=2;DP=2158;set=Intersection	GT:DP:GQ:SB	3/9:55:99:3,1,34,17
chr2	55074429	.	C	A	43.71	PASS	AC=1;AF=0.648;AN=2;DP=332;MQ=60;set=variant2-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:181,0,325:8,1,5,1
chr2	55077061	.	A	G	866.53	PASS	AC=1;AF=0.662;AN=2;DP=746;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:323,0,654:18,0,8,2
chr2	55091029	.	C	T	859.12	PASS	AC=1;AF=0.605;AN=2;DP=1690;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant16-variant18-variant19-variant22-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1409,0,1427:29,35,30,33
chr2	55093784	.	T	A	156.89	PASS	AC=1;AF=0.588;AN=2;DP=311;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant15-variant16-variant18-variant19-variant22-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:193,0,298:8,0,6,0
chr2	55093842	.	G	A	837.36	PASS	AC=1;AF=0.667;AN=2;DP=1152;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant11-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:797,0,787:19,14,21,8
chr2	55121851	.	T	A	85.7	PASS	AC=1;AF=0.615;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant18-variant20-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:175,0,338:9,0,4,1
chr2	55121930	.	C	G	570.94	PASS	AC=1;AF=0.667;AN=2;DP=1674;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:1103,0,849:23,9,30,7
chr2	55122589	.	A	G	903.68	PASS	AC=1;AF=0.633;AN=2;DP=2546;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant23-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,45:117:99:1019,0,1705:30,42,19,26
chr2	55126730	.	C	G	1704.22	PASS	AC=1;AF=0.6;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant32-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1240,0,1037:27,10,29,15
chr2	55138272	.	G	A	554.2	PASS	AC=1;AF=0.704;AN=2;DP=314;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant15-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:153,0,145:0,4,0,4
chr2	55155672	.	A	G	1373.83	PASS	AC=1;AF=0.654;AN=2;DP=4107;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant23-variant26-variant27-variant30-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,98:184:99:2553,0,2045:44,42,49,49
chr2	55180965	.	G	A	88.71	PASS	AC=2;AF=0.943;AN=2;DP=692;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:819,60,0:0,0,18,2
chr2	55181022	.	TA	T,TAA	270.68	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=2044;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-variant27-variant28-variant29-variant30-variant32-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:46:99:19,4,16,7
chr2	55186229	.	T	C	2627.07	PASS	AC=2;AF=0.811;AN=2;DP=3360;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3318,308,0:0,0,51,52
chr2	55186394	.	A	C	2143.67	PASS	AC=2;AF=0.811;AN=2;DP=2755;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2859,279,0:0,0,37,56
chr2	55187297	.	A	AG	2507.14	PASS	AC=2;AF=1;AN=2;DP=4606;FS=0;MQ=60;MQRankSum=-0.765;ReadPosRankSum=1.75;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3850,358,0:0,0,67,49
chr2	55197882	.	A	T	1122.04	PASS	AC=2;AF=0.722;AN=2;DP=1966;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2836,207,0:0,0,13,56
chr2	55199248	.	C	T	1382.85	PASS	AC=2;AF=0.656;AN=2;DP=2580;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3407,270,0:0,0,62,28
chr2	55199557	.	A	ATGT	8184.64	PASS	AC=2;AF=0.672;AN=2;DP=12539;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,466:466:99:20849,1401,0:0,0,257,209
chr2	55199931	.	CT	C,CTT	550.76	PASS	AC=1,0;AF=0.405,0.095;AN=2;DP=13121;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-variant9-variant10-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:281:99:104,119,26,32
chr2	55200038	.	CAGAT	C	4545.18	PASS	AC=2;AF=0.676;AN=2;DP=8237;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,299:299:99:13366,901,0:0,0,151,148
chr2	55200800	.	T	G	1002.28	PASS	AC=2;AF=0.656;AN=2;DP=1681;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2906,243,0:0,0,34,47
chr2	55201038	.	C	T	787.03	PASS	AC=2;AF=0.895;AN=2;DP=2638;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2026,203,0:0,0,23,45
chr2	55214618	.	A	C	162.77	PASS	AC=2;AF=0.821;AN=2;DP=1927;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1692,155,0:0,1,34,20
chr2	55214912	.	C	G	296.95	PASS	AC=2;AF=0.915;AN=2;DP=436;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:217,21,0:0,0,2,5
chr2	55277953	.	T	TG	1455.31	PASS	AC=2;AF=0.932;AN=2;DP=3377;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:4376,295,0:0,0,40,58
chr2	55277956	.	C	G	1464.36	PASS	AC=2;AF=0.932;AN=2;DP=3337;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:4376,295,0:0,0,40,57
chr2	55404794	.	G	A	861.83	PASS	AC=2;AF=0.683;AN=2;DP=1712;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2161,233,0:0,0,42,36
chr2	55407754	.	C	T	4533.6	PASS	AC=2;AF=0.989;AN=2;DP=6639;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5277,560,0:0,0,95,93
chr2	55407935	.	G	A	638.95	PASS	AC=2;AF=0.977;AN=2;DP=1078;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1010,87,0:0,0,5,24
chr2	55439963	.	C	A	3038.73	PASS	AC=2;AF=0.989;AN=2;DP=2870;FS=0;MQ=60;MQRankSum=-1.55;ReadPosRankSum=0.941;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2571,258,0:0,0,35,51
chr2	55459094	.	C	G	464.47	PASS	AC=2;AF=0.989;AN=2;DP=1236;FS=0;MQ=60;MQRankSum=-0.373;ReadPosRankSum=1.002;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1016,98,0:0,0,23,10
chr2	55461823	.	T	A	1797.88	PASS	AC=2;AF=0.917;AN=2;DP=2277;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2311,219,0:0,0,44,29
chr2	55470115	.	C	T	590.27	PASS	AC=2;AF=0.829;AN=2;DP=1113;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:954,81,0:0,0,19,8
chr2	55471407	.	T	C	3334.01	PASS	AC=2;AF=0.989;AN=2;DP=3310;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,95:96:99:2813,278,0:0,1,51,44
chr2	55471559	.	A	C	533.39	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.697;QD=18.39;ReadPosRankSum=2.495;SOR=0.593;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:562,0,236:2,9,4,14
chr2	55473371	.	A	G	472.77	PASS	AC=2;AF=0.677;AN=2;DP=748;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:833,74,0:0,0,20,5
chr2	55473386	.	CAT	C	679.99	PASS	AC=2;AF=0.829;AN=2;DP=1305;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1703,117,0:0,0,29,10
chr2	55473681	.	A	C	689.76	PASS	AC=2;AF=0.989;AN=2;DP=522;MQ=60;MQRankSum=1.683;ReadPosRankSum=-0.248;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:412,39,0:0,0,4,9
chr2	55489629	.	T	C	145.21	PASS	AC=2;AF=0.838;AN=2;DP=516;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:811,75,0:0,0,8,17
chr2	55490819	.	G	T	782.41	PASS	AC=2;AF=0.829;AN=2;DP=3151;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2796,273,0:0,0,56,36
chr2	55516090	.	C	T	4842.83	PASS	AC=1;AF=0.559;AN=2;DP=5172;MQ=60;set=variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant20-variant24-variant26-variant27-variant31-variant32-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:212,183:395:99:4786,0,5409:110,102,83,100
chr2	55516323	.	T	G	3453.21	PASS	AC=2;AF=0.93;AN=2;DP=4572;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4309,362,0:0,0,48,73
chr2	55516588	.	G	C	15550.4	PASS	AC=2;AF=0.966;AN=2;DP=21528;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,592:594:99:18081,1727,0:1,1,298,294
chr2	55516723	.	C	T	15674.1	PASS	AC=2;AF=0.966;AN=2;DP=18307;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,468:468:99:15213,1403,0:0,0,221,247
chr2	55516911	.	AAGAGAGAGAG	AAGAG,A,AAGAGAG,AAGAGAGAGAGAGAG,AAGAGAGAG	5542.8	PASS	AC=2,0,0,0,0;AF=0.886,0.034,0.034,0.011,0.011;AN=2;DP=7833;set=Intersection	GT:DP:GQ:SB	1/1:156:99:0,0,62,94
chr2	55517491	.	G	A	4122.87	PASS	AC=1;AF=0.643;AN=2;DP=10442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:179,174:353:99:4052,0,4526:105,74,97,77
chr2	55518742	.	T	C	998.45	PASS	AC=2;AF=0.93;AN=2;DP=1302;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1315,117,0:0,0,28,11
chr2	55522422	.	A	G	2265.82	PASS	AC=2;AF=0.977;AN=2;DP=2719;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2520,236,0:0,0,36,43
chr2	55523308	.	C	CAA,CA,CAAA	503.29	PASS	AC=0,0,2;AF=0.762,0.143,0.071;AN=2;DP=367;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:5:15:0,0,2,3
chr2	55523309	.	C	A	548.31	PASS	AC=2;AF=0.965;AN=2;DP=390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:215,15,0:0,0,2,3
chr2	55527108	.	G	A	1169.17	PASS	AC=2;AF=0.86;AN=2;DP=3793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3147,294,0:0,0,40,58
chr2	55528257	.	A	C	1902.99	PASS	AC=2;AF=0.966;AN=2;DP=2352;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2105,200,0:0,0,38,29
chr2	55528514	.	A	G	151.77	PASS	AC=2;AF=1;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:310,24,0:0,0,3,5
chr2	55559651	.	CA	C	82.4	PASS	AC=1;AF=0.5;AN=2;DP=856;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-variant6-variant7-variant10-variant12-variant15-variant21-variant22-variant24-variant26-variant27-variant29-variant32-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,12:50:99:144,0,788:27,11,10,2
chr2	55566531	.	A	C	70.65	PASS	AC=1;AF=0.568;AN=2;DP=256;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant20-variant24-variant26-variant27-variant28-variant31-variant32-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:181,0,233:6,0,5,1
chr2	55566538	.	CTATT	C	223.82	PASS	AC=1;AF=0.571;AN=2;DP=295;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant24-variant26-variant27-variant28-variant31-variant32-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:264,0,449:8,2,6,1
chr2	55576634	.	C	T	1014.92	PASS	AC=1;AF=0.618;AN=2;DP=3546;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,64:117:99:1588,0,1138:25,28,31,33
chr2	55582601	.	T	TTTGACACA	190.41	PASS	AC=1;AF=0.618;AN=2;DP=427;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:390,0,393:7,3,6,1
chr2	55582684	.	A	T	730.32	PASS	AC=1;AF=0.609;AN=2;DP=1816;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:856,0,704:18,9,19,13
chr2	55589364	.	G	A	66.89	PASS	AC=1;AF=0.588;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant9-variant12-variant13-variant15-variant16-variant20-variant24-variant26-variant28-variant31-variant32-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:316,0,128:4,1,8,1
chr2	55589434	.	T	A	494.67	PASS	AC=1;AF=0.621;AN=2;DP=1221;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,34:46:99:814,0,211:8,4,20,14
chr2	55599540	.	T	C	1070.55	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0.994;FractionInformativeReads=1;MQ=60;MQRankSum=0.995;QD=15.98;ReadPosRankSum=-1.061;SOR=0.929;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:22,45:67:99:1099,0,466:11,11,25,20
chr2	55599655	.	G	A	286.99	PASS	AC=1;AF=0.689;AN=2;DP=2289;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,50:80:99:1238,0,577:15,15,20,30
chr2	55646761	.	T	C	1455.28	PASS	AC=2;AF=0.884;AN=2;DP=3677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,104:106:99:3232,283,0:1,1,56,48
chr2	55760940	.	G	T	1915.33	PASS	AC=2;AF=0.869;AN=2;DP=2395;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2240,222,0:0,0,48,26
chr2	55762832	.	T	C	1239.8	PASS	AC=1;AF=0.5;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant19-variant23-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:44,55:99:99:1324,0,999:27,17,33,22
chr2	55762957	.	C	T	1482.21	PASS	AC=1;AF=0.671;AN=2;DP=2994;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,61:137:99:1330,0,1864:34,42,32,29
chr2	55764754	.	AATATGAATAC	A	1088.6	PASS	AC=1;AF=0.686;AN=2;DP=1008;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:948,0,2260:7,13,7,17
chr2	55771050	.	C	G	789.51	PASS	AC=2;AF=0.829;AN=2;DP=933;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1025,96,0:0,0,23,9
chr2	55771161	.	A	G	1772.9	PASS	AC=2;AF=0.932;AN=2;DP=3054;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2460,257,0:0,0,47,39
chr2	55772688	.	G	C	1575.35	PASS	AC=1;AF=0.5;AN=2;DP=856;MQ=60;set=variant4-variant15-variant19-variant23-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:83,95:178:99:2311,0,1943:40,43,45,50
chr2	55776641	.	A	G	124.46	PASS	AC=1;AF=0.5;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant19-variant23-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:188,0,111:3,0,5,1
chr2	55776793	.	G	A	3085.55	PASS	AC=2;AF=0.795;AN=2;DP=4030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4456,433,0:0,0,91,54
chr2	55785828	.	A	G	649.25	PASS	AC=1;AF=0.5;AN=2;DP=386;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant19-variant23-variant24	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1197,0,1209:32,12,32,17
chr2	55791688	.	T	C	184.64	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant19-variant23-variant24	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:235,0,439:3,11,1,7
chr2	55805440	.	T	C	1093.85	PASS	AC=2;AF=0.977;AN=2;DP=1863;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2137,222,0:0,0,36,38
chr2	55808969	.	C	T	406.41	PASS	AC=2;AF=0.932;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:509,39,0:0,0,1,12
chr2	55812061	.	A	G	616.34	PASS	AC=1;AF=0.586;AN=2;DP=1183;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:778,0,763:20,7,20,8
chr2	55812073	.	T	G	1837.65	PASS	AC=1;AF=0.686;AN=2;DP=1716;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:903,0,987:24,10,24,8
chr2	55815922	.	CA	C	916.2	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0.916;FractionInformativeReads=1;MQ=60;MQRankSum=-0.226;QD=11.45;ReadPosRankSum=-1.489;SOR=0.899;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:953,0,1092:28,14,27,11
chr2	55815997	.	T	C	1320.45	PASS	AC=1;AF=0.536;AN=2;DP=1485;MQ=60;set=variant4-variant12-variant15-variant19-variant23-variant24-variant26-variant29-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,69:153:99:1546,0,1947:42,42,34,35
chr2	55844445	.	T	C	2881.7	PASS	AC=1;AF=0.686;AN=2;DP=4117;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,71:141:99:1881,0,2053:35,35,30,41
chr2	55844616	.	A	AG	4697.75	PASS	AC=2;AF=1;AN=2;DP=7394;FS=0;MQRankSum=0.655;ReadPosRankSum=-1.861;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:7251,596,0:0,0,105,93
chr2	55862440	.	T	C	3302.94	PASS	AC=2;AF=0.932;AN=2;DP=4452;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4276,405,0:0,0,54,81
chr2	55862450	.	ATT	AT,A	925.38	PASS	AC=2,0;AF=0.727,0.045;AN=2;DP=3779;set=Intersection	GT:DP:GQ:SB	1/1:87:99:2,4,26,55
chr2	55862775	.	C	A	4495.58	PASS	AC=1;AF=0.686;AN=2;DP=4632;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,85:189:99:2041,0,2669:51,53,37,48
chr2	55863360	.	T	TA	578.07	PASS	AC=2;AF=0.694;AN=2;DP=1258;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:3,35:38:31:851,31,0:2,1,26,9
chr2	55864372	.	A	G	861.32	PASS	AC=1;AF=0.5;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant19-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:412,0,678:17,9,11,5
chr2	55872717	.	T	C	263.16	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant19-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:187,0,186:0,5,1,4
chr2	55873301	.	T	A	927.11	PASS	AC=1;AF=0.686;AN=2;DP=664;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:168,0,360:9,5,4,1
chr2	55873357	.	G	C	889.5	PASS	AC=1;AF=0.5;AN=2;DP=278;MQ=60;set=variant4-variant15-variant19-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:643,0,633:16,9,17,10
chr2	55883317	.	G	T	1515.99	PASS	AC=2;AF=0.736;AN=2;DP=1215;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:828,81,0:0,0,16,11
chr2	55889062	.	G	A	616.36	PASS	AC=2;AF=0.932;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:627,48,0:0,0,13,3
chr2	55894247	.	T	C	3837.54	PASS	AC=1;AF=0.7;AN=2;DP=3703;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,76:151:99:1811,0,1606:41,34,40,36
chr2	55898203	.	A	G	716.19	PASS	AC=1;AF=0.721;AN=2;DP=714;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:193,0,600:15,6,6,3
chr2	55898290	.	C	G	1261.27	PASS	AC=1;AF=0.7;AN=2;DP=1635;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:558,0,921:18,20,15,12
chr2	55898929	.	A	G	511.77	PASS	AC=2;AF=0.93;AN=2;DP=405;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:615,42,0:0,0,12,2
chr2	55898930	.	C	T	511.77	PASS	AC=1;AF=0.758;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:271,0,215:6,0,6,2
chr2	55898962	.	AAAAAC	A	355.84	PASS	AC=1;AF=0.5;AN=2;DP=100;MQ=60;set=variant4-variant15-variant19-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:417,0,429:7,4,9,2
chr2	55899228	.	A	T	705.24	PASS	AC=2;AF=0.932;AN=2;DP=1026;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:917,75,0:0,0,4,21
chr2	55900283	.	A	G	1536.74	PASS	AC=1;AF=0.7;AN=2;DP=1614;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:626,0,711:10,17,11,15
chr2	55900459	.	A	G	403.89	PASS	AC=1;AF=0.734;AN=2;DP=344;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:159,0,153:0,4,3,3
chr2	55912120	.	T	C	1935.19	PASS	AC=1;AF=0.691;AN=2;DP=2401;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,56:80:99:1580,0,494:10,14,26,30
chr2	55913644	.	C	A	801.45	PASS	AC=1;AF=0.5;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant19-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:773,0,931:14,21,8,18
chr2	55914621	.	T	C	897.6	PASS	AC=1;AF=0.691;AN=2;DP=660;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:225,0,275:7,2,6,0
chr2	55915155	.	T	A	196.77	PASS	AC=2;AF=0.932;AN=2;DP=359;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,1,4
chr2	55920663	.	T	C	327.52	PASS	AC=1;AF=0.5;AN=2;DP=216;MQ=60;set=variant10-variant14-variant15-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:945,0,726:22,5,26,8
chr2	55921116	.	C	G	841.35	PASS	AC=1;AF=0.691;AN=2;DP=1454;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:764,0,831:8,19,10,18
chr2	56098272	.	G	A	787.16	PASS	AC=1;AF=0.5;AN=2;DP=481;MQ=60;set=variant9-variant10-variant15-variant30-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:53,43:96:99:1058,0,1320:22,31,16,27
chr2	56145270	.	A	G	2065.79	PASS	AC=1;AF=0.5;AN=2;DP=870;MQ=60;set=variant9-variant10-variant15-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,64:166:99:1622,0,2790:45,57,32,32
chr2	56150402	.	A	G	646.85	PASS	AC=1;AF=0.521;AN=2;DP=747;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant22-variant24-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,15:44:99:415,0,803:9,20,3,12
chr2	56216052	.	G	A	3452.84	PASS	AC=1;AF=0.869;AN=2;DP=4042;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,69:146:99:1639,0,1847:43,34,39,30
chr2	56411157	.	T	C	432.81	PASS	AC=2;AF=0.93;AN=2;DP=767;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:534,42,0:0,0,12,2
chr2	56411363	.	G	A	5865.67	PASS	AC=2;AF=0.92;AN=2;DP=7659;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,238:238:99:6802,710,0:0,0,132,106
chr2	56411817	.	C	T	3332.95	PASS	AC=2;AF=0.881;AN=2;DP=5556;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4303,437,0:0,0,78,69
chr2	56599354	.	A	G	312.93	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant-variant14-variant15-variant20-variant22-variant28-variant33-variant37-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:91:91,0,242:7,2,3,0
chr2	56611543	.	C	CAAG	1884.61	PASS	AC=1;AF=0.574;AN=2;DP=3114;set=variant-variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,47:117:99:1777,0,3135:37,33,26,21
chr2	56611725	.	C	A	2220.82	PASS	AC=1;AF=0.577;AN=2;DP=4001;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:103,84:187:99:2162,0,2807:59,44,49,35
chr2	56612594	.	C	T	2272.57	PASS	AC=1;AF=0.577;AN=2;DP=6675;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:185,130:315:99:3291,0,5126:93,92,62,68
chr2	58135010	.	C	G	259.69	PASS	AC=1;AF=0.736;AN=2;DP=745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:250,0,760:2,11,1,6
chr2	58135011	.	G	A	259.69	PASS	AC=1;AF=0.736;AN=2;DP=731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:250,0,760:2,11,1,6
chr2	58135023	.	T	C	215.96	PASS	AC=1;AF=0.611;AN=2;DP=463;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:178,0,314:2,8,1,5
chr2	58275666	.	G	A	770.53	PASS	AC=2;AF=0.808;AN=2;DP=3637;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2961,293,0:0,0,55,43
chr2	58316814	.	A	G	1066.7	PASS	AC=1;AF=0.583;AN=2;DP=2533;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,50:113:99:1221,0,1587:35,28,31,19
chr2	58358810	.	C	G	468.58	PASS	AC=1;AF=0.5;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant12-variant15-variant16-variant29-variant32-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:421,0,348:9,5,11,1
chr2	58362161	.	G	A	715.64	PASS	AC=1;AF=0.603;AN=2;DP=852;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:326,0,532:15,2,13,3
chr2	58387000	.	C	T	2380.75	PASS	AC=1;AF=0.519;AN=2;DP=3786;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,84:176:99:2493,0,2369:30,62,19,65
chr2	58388696	.	A	G	1454.87	PASS	AC=1;AF=0.684;AN=2;DP=4057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,75:146:99:1747,0,1621:36,35,40,35
chr2	58449041	.	CA	C	253.7	PASS	AC=1;AF=0.5;AN=2;DP=293;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant12-variant15-variant16-variant29-variant32-variant34-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:374,0,514:13,4,9,4
chr2	59230996	.	A	C	133.34	PASS	AC=1;AF=0.636;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:219,0,376:9,3,6,2
chr2	59241436	.	A	G	1512.3	PASS	AC=2;AF=0.671;AN=2;DP=4111;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3882,368,0:0,0,74,49
chr2	59241688	.	A	AGAT	421.29	PASS	AC=2;AF=0.676;AN=2;DP=692;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1029,69,0:0,0,2,21
chr2	60614572	.	G	A	2027.77	PASS	AC=1;AF=0.583;AN=2;DP=3809;MQ=60;set=variant2-variant4-variant5-variant11-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,98:187:99:2406,0,2144:48,41,50,48
chr2	60679226	.	G	A	1819.03	PASS	AC=1;AF=0.712;AN=2;DP=6093;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,115:233:99:2995,0,3098:66,52,66,49
chr2	60684805	.	GT	G,GTT	184.32	PASS	AC=1,0;AF=0.474,0.053;AN=2;DP=498;set=variant2-variant4-variant8-variant9-variant12-variant13-variant15-variant17-variant19-variant22-variant23-variant26-variant28-variant31-variant33-variant34-variant37-variant40-variant44	GT:DP:GQ:SB	0/1:26:99:4,8,3,11
chr2	60687303	.	GA	G,GAA	182.53	PASS	AC=1,0;AF=0.5,0.031;AN=2;DP=424;set=variant2-variant4-variant8-variant15-variant22-variant23-variant26-variant28-variant31-variant33-variant34-variant35-variant37-variant40-variant42-variant44	GT:DP:GQ:SB	0/1:26:99:1,10,3,12
chr2	60687959	.	A	G	5902.68	PASS	AC=1;AF=0.73;AN=2;DP=7112;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,128:223:99:3462,0,2469:41,54,58,70
chr2	60688964	.	A	AGGGGG	878.96	PASS	AC=1;AF=0.5;AN=2;DP=326;MQ=60;set=variant11-variant15	GT:AD:DP:GQ:PL:SB	0/1:117,15:132:99:964,0,5491:100,17,0,15
chr2	60688968	.	A	G	227.62	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1393;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:117,79:196:99:1768,0,2365:102,15,0,79
chr2	60689748	.	A	G	319.82	PASS	AC=1;AF=0.742;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:427,0,513:1,14,0,12
chr2	60780421	.	GGGCGGCGGC	GGGCGGCGGCGGCGGC,G,GGGCGGCGGCGGC,GGGCGGC	971.5	PASS	AC=1,0,0,0;AF=0.143,0.071,0.071,0.214;AN=2;DP=450;FS=0;set=variant2-variant6-variant13-variant15-filterInvariant24-filterInvariant36-filterInvariant43	GT:DP:GQ:SB	0/1:53:99:12,12,14,15
chr2	60988933	.	C	T	1221.73	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.145;QD=13.73;ReadPosRankSum=1.633;SOR=0.646;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:39,50:89:99:1250,0,939:20,19,25,25
chr2	60997770	.	T	A	49.73	PASS	AC=2;AF=0.648;AN=2;DP=313;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:605,42,0:0,0,0,14
chr2	61007782	.	A	G	1353.97	PASS	AC=2;AF=0.763;AN=2;DP=3820;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4519,407,0:0,0,94,42
chr2	61008036	.	C	T	1344.98	PASS	AC=2;AF=1;AN=2;DP=1493;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1683,132,0:0,0,6,38
chr2	61009813	.	T	TTA,TA	527.27	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=91;set=variant15-variant21-variant32	GT:DP:GQ:SB	0/1:31:37:6,2,12,11
chr2	61009909	.	C	T	191.41	PASS	AC=2;AF=0.632;AN=2;DP=1772;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1871,188,0:0,0,30,33
chr2	61010459	.	C	CT,CTT	33.88	PASS	AC=0,1;AF=0.667,0.167;AN=2;DP=35;FS=0;set=variant3-variant15-variant22	GT:DP:GQ:SB	0/2:4:8:0,1,0,3
chr2	61014952	.	A	G	578.14	PASS	AC=2;AF=0.69;AN=2;DP=289;MQ=60;set=variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:258,18,0:0,0,0,6
chr2	61018788	.	C	T	71.25	PASS	AC=2;AF=0.605;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:405,30,0:0,0,10,0
chr2	61021349	.	A	G	258.12	PASS	AC=2;AF=0.618;AN=2;DP=645;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:887,66,0:0,0,1,21
chr2	61022656	.	C	T	118.69	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant20	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:147,0,221:1,6,0,4
chr2	61024661	.	G	GT,GTT	231.64	PASS	AC=0,2;AF=0.273,0.295;AN=2;DP=1393;set=variant4-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant44	GT:DP:GQ:SB	2/2:62:99:0,0,37,25
chr2	61024667	.	C	T	885.91	PASS	AC=2;AF=0.591;AN=2;DP=1481;set=variant4-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2692,189,0:0,0,37,26
chr2	61027891	.	A	G	2897.76	PASS	AC=2;AF=0.594;AN=2;DP=3794;MQ=60;set=variant7-variant8-variant11-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant31-variant32-variant33-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:1,271:272:99:8929,806,0:0,1,108,163
chr2	61118739	.	A	G	713.02	PASS	AC=1;AF=0.55;AN=2;DP=428;MQ=60;set=variant4-variant8-variant9-variant10-variant14-variant15-variant16-variant20-variant21-variant25-variant26-variant29-variant30-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:461,0,498:13,2,12,5
chr2	61121492	.	G	A	1102.98	PASS	AC=2;AF=0.966;AN=2;DP=1116;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:985,75,0:0,0,22,3
chr2	61128268	.	G	A	1465.75	PASS	AC=1;AF=0.55;AN=2;DP=519;MQ=60;set=variant4-variant8-variant9-variant10-variant14-variant15-variant16-variant20-variant21-variant25-variant26-variant29-variant30-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:639,0,434:4,10,8,12
chr2	61128284	.	T	C	647.28	PASS	AC=1;AF=0.742;AN=2;DP=483;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:402,0,322:2,8,3,6
chr2	61128285	.	CTTT	CT,CTTTT,C	1042.73	PASS	AC=2,0,0;AF=0.3,0.125,0.225;AN=2;DP=363;set=variant4-variant7-variant8-variant9-variant10-variant12-variant15-variant22-variant23-variant25-variant26-variant27-variant29-variant32-variant34-variant35-variant36-variant40-variant41-variant43	GT:DP:GQ:SB	1/1:14:4:1,1,3,9
chr2	61145498	.	AT	A	101.3	PASS	AC=1;AF=0.5;AN=2;DP=944;MQ=60;set=filterInvariant3-filterInvariant10-filterInvariant15-filterInvariant17-filterInvariant20-filterInvariant23-filterInvariant27-filterInvariant34-variant36-filterInvariant37-filterInvariant40-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:70,16:86:99:167,0,1610:40,30,12,4
chr2	61175312	.	T	C	2472.33	PASS	AC=1;AF=0.75;AN=2;DP=5057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,63:138:99:1401,0,1726:42,33,34,29
chr2	61187478	.	CAA	CAAA,CA,C	149.62	PASS	AC=0,1,0;AF=0.115,0.365,0.019;AN=2;DP=591;set=variant2-variant3-variant4-variant6-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-filterInvariant26-variant30-variant34-variant35-variant36-variant37-variant40-variant42-variant44	GT:DP:GQ:SB	0/2:25:99:10,5,8,2
chr2	61237739	.	C	G	511.36	PASS	AC=1;AF=0.545;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:725,0,600:15,7,18,9
chr2	61244410	.	C	G	865.72	PASS	AC=1;AF=0.545;AN=2;DP=956;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,47:103:99:1163,0,1299:33,23,25,22
chr2	61244663	.	A	C	879.21	PASS	AC=1;AF=0.536;AN=2;DP=1157;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant33-variant34-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:1266,0,1514:35,23,24,19
chr2	61245551	.	G	C	2120.72	PASS	AC=1;AF=0.545;AN=2;DP=1653;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,94:188:99:2494,0,2572:54,40,54,40
chr2	61245604	.	AT	A	2415.08	PASS	AC=1;AF=0.545;AN=2;DP=2008;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant33-variant43	GT:AD:DP:GQ:PL:SB	0/1:115,101:216:99:2187,0,2631:66,49,52,49
chr2	61246145	.	G	A	2240.22	PASS	AC=2;AF=0.643;AN=2;DP=5085;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6659,643,0:0,0,88,127
chr2	61276263	.	G	A	10489.4	PASS	AC=2;AF=1;AN=2;DP=14406;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,454:454:99:13478,1359,0:0,0,202,252
chr2	61276332	.	AT	A	68.52	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=1142;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:202,31:233:74:74,0,4124:76,126,12,19
chr2	61293116	.	A	G	839.23	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:867,0,1232:24,26,19,17
chr2	61293667	.	T	A	853.13	PASS	AC=1;AF=0.5;AN=2;DP=195;FS=0;MQ=60;set=variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:69,41:110:99:881,0,1803:25,44,15,26
chr2	61297743	.	G	A	874.1	PASS	AC=1;AF=0.5;AN=2;DP=240;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant15-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:693,0,759:2,20,2,18
chr2	61304002	.	A	G	537.6	PASS	AC=2;AF=0.73;AN=2;DP=1148;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1136,104,0:0,0,24,11
chr2	61304377	.	A	T	357.98	PASS	AC=1;AF=0.559;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant14-variant15-variant19-variant20-variant21-variant23-variant25-variant26-variant29-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:392,0,216:0,6,2,10
chr2	61308517	.	A	G	271.56	PASS	AC=2;AF=0.73;AN=2;DP=825;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:723,69,0:0,0,16,7
chr2	61319728	.	A	AT	737.12	PASS	AC=1;AF=0.5;AN=2;DP=246;MQ=60;set=variant15-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:774,0,661:15,17,12,26
chr2	61324784	.	A	G	291.01	PASS	AC=1;AF=0.571;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:292,0,347:9,0,8,2
chr2	61349446	.	G	A	2279.35	PASS	AC=2;AF=0.768;AN=2;DP=3403;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3719,289,0:0,0,48,47
chr2	61349451	.	G	C	1270.77	PASS	AC=1;AF=0.5;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant15-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1299,0,1419:26,23,25,22
chr2	61349916	.	T	C	5439.51	PASS	AC=1;AF=0.5;AN=2;DP=1206;MQ=60;set=variant15-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:237,232:469:99:5468,0,5980:114,123,113,119
chr2	61384906	.	T	C	260.58	PASS	AC=1;AF=0.559;AN=2;DP=747;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:198,0,403:8,6,6,2
chr2	61385248	.	A	G	719.59	PASS	AC=1;AF=0.559;AN=2;DP=2415;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,33:77:99:891,0,1256:24,20,15,18
chr2	61389609	.	G	C	884.16	PASS	AC=2;AF=0.567;AN=2;DP=1282;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant27-variant33-variant34-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:2964,320,0:0,0,58,49
chr2	61389737	.	T	G	707.84	PASS	AC=1;AF=0.559;AN=2;DP=1486;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:905,0,357:5,12,7,21
chr2	61404415	.	G	C	219.07	PASS	AC=1;AF=0.5;AN=2;DP=30;FractionInformativeReads=1;MQ=60;set=variant15-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:87:247,0,87:1,3,5,6
chr2	61404905	.	C	G	742.97	PASS	AC=2;AF=0.536;AN=2;DP=1627;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant33-variant34-variant35-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2779,242,0:0,0,43,38
chr2	61405795	.	G	T	1404.06	PASS	AC=1;AF=0.73;AN=2;DP=2865;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,51:106:99:1388,0,1295:28,27,21,30
chr2	61412559	.	C	T	428	PASS	AC=1;AF=0.766;AN=2;DP=340;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:332,0,303:8,0,8,2
chr2	61413092	.	AATAAC	A	766.31	PASS	AC=1;AF=0.538;AN=2;DP=667;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant27-variant34-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:956,0,2162:19,12,16,9
chr2	61413723	.	A	G	3806.65	PASS	AC=2;AF=0.817;AN=2;DP=4981;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4982,464,0:0,0,83,72
chr2	61414183	.	T	C	5124.39	PASS	AC=1;AF=0.5;AN=2;DP=1136;MQ=60;set=variant15-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:208,208:416:99:5153,0,5297:95,113,99,109
chr2	61414639	.	GCAAT	G,GCAATCAAT	4038.64	PASS	AC=2,0;AF=0.805,0.012;AN=2;DP=3710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:103:99:0,0,48,55
chr2	61415492	.	A	G	783.78	PASS	AC=1;AF=0.583;AN=2;DP=2142;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1210,0,1336:32,14,28,18
chr2	61417617	.	A	G	1504.48	PASS	AC=1;AF=0.722;AN=2;DP=3678;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,60:92:99:1496,0,813:16,16,28,32
chr2	61439206	.	C	T	855.17	PASS	AC=1;AF=0.719;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:370,0,574:4,15,0,11
chr2	61450454	.	A	G	478.29	PASS	AC=1;AF=0.625;AN=2;DP=1482;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:657,0,741:10,19,7,18
chr2	61454059	.	T	A	457.68	PASS	AC=1;AF=0.741;AN=2;DP=477;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:298,0,304:5,8,7,7
chr2	61456592	.	TAA	TA,T	31.19	PASS	AC=1,0;AF=0.25,0.375;AN=2;DP=29;MQ=60;set=variant15-variant25-variant27-variant41	GT:DP:GQ:SB	0/1:6:15:2,0,4,0
chr2	61459803	.	T	A	226.37	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant15-variant33-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:255,0,352:0,10,1,6
chr2	61468991	.	A	C	275.76	PASS	AC=1;AF=0.571;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:118,0,325:3,8,1,4
chr2	61475577	.	A	G	1100.95	PASS	AC=1;AF=0.545;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant13-variant15-variant24-variant27-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,62:95:99:1770,0,844:25,8,43,19
chr2	61483715	.	A	T	279.77	PASS	AC=2;AF=0.815;AN=2;DP=293;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:309,30,0:0,0,1,9
chr2	61483725	.	T	A	330.38	PASS	AC=2;AF=0.804;AN=2;DP=247;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:326,30,0:0,0,1,9
chr2	61484556	.	T	C	397.01	PASS	AC=1;AF=0.726;AN=2;DP=345;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,13:19:99:380,0,171:0,6,3,10
chr2	61511865	.	C	T	81.98	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant33-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:110,0,74:2,1,3,1
chr2	61522047	.	T	C	64.71	PASS	AC=1;AF=0.654;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:206,0,270:7,2,5,4
chr2	61522123	.	T	C	1096.3	PASS	AC=2;AF=0.989;AN=2;DP=2092;MQ=60;MQRankSum=0.3;ReadPosRankSum=1.004;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1621,165,0:0,0,31,24
chr2	61528299	.	T	TA	442.66	PASS	AC=1;AF=0.654;AN=2;DP=1088;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:596,0,575:10,13,8,15
chr2	61538602	.	G	GAAAAGAGAAAGAAAAAGAAAA,GAAAAGAGAAAGAAAAAGAAAAA	186.37	PASS	AC=2,0;AF=0.875,0.013;AN=2;DP=265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:7:36:0,0,6,1
chr2	61552484	.	T	A	572.13	PASS	AC=1;AF=0.744;AN=2;DP=1010;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:299,0,343:9,8,9,7
chr2	61566824	.	GA	G,GAA	141.02	PASS	AC=1,0;AF=0.464,0.036;AN=2;DP=620;MQ=60;set=variant3-filterInvariant7-filterInvariant10-filterInvariant14-variant15-filterInvariant17-variant18-filterInvariant23-filterInvariant27-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant40	GT:DP:GQ:SB	0/1:51:99:14,24,6,7
chr2	61570886	.	AAAGT	A	1072.07	PASS	AC=1;AF=0.635;AN=2;DP=1121;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:849,0,1334:20,5,18,4
chr2	61575308	.	A	G	5083.97	PASS	AC=2;AF=0.977;AN=2;DP=6666;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5984,516,0:0,0,94,78
chr2	61576517	.	G	A	2632.37	PASS	AC=2;AF=1;AN=2;DP=3511;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3001,285,0:0,0,45,50
chr2	61577526	.	T	TA	1056.48	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=0.714;FractionInformativeReads=0.933;MQ=60;MQRankSum=-0.24;QD=8.8;ReadPosRankSum=0.622;SOR=0.823;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:63,49:112:99:1094,0,1555:29,34,21,28
chr2	61605614	.	T	A	715.39	PASS	AC=1;AF=0.622;AN=2;DP=1713;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:710,0,768:15,19,14,17
chr2	61622251	.	C	T	212.82	PASS	AC=1;AF=0.609;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant10-variant14-variant15-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,13:42:99:329,0,886:13,16,5,8
chr2	61633305	.	C	T	129.41	PASS	AC=1;AF=0.5;AN=2;DP=61;FractionInformativeReads=1;MQ=60;set=variant15-variant33-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:158,0,362:2,9,3,5
chr2	61647901	.	A	G	994.45	PASS	AC=1;AF=0.63;AN=2;DP=1874;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:668,0,936:15,21,13,16
chr2	61648909	.	AAC	A,AACAC	55.9	PASS	AC=1,0;AF=0.438,0.094;AN=2;DP=208;set=variant2-variant7-variant9-variant15-variant18-variant23-variant26-variant28-variant31-variant33-variant35-variant37-variant38-variant40-variant42-variant43	GT:DP:GQ:SB	0/1:10:42:0,1,6,3
chr2	61705356	.	ATAAC	A	4989.83	PASS	AC=1;AF=0.5;AN=2;DP=1271;set=variant15-variant29-variant33-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,128:243:99:5027,0,6044:57,58,69,59
chr2	61713209	.	GGAAAATC	G	456.11	PASS	AC=1;AF=0.6;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:424,0,1671:0,10,0,11
chr2	61713218	.	T	A	467.75	PASS	AC=1;AF=0.6;AN=2;DP=693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:424,0,1672:0,10,0,11
chr2	61713220	.	T	G	412.58	PASS	AC=1;AF=0.6;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:424,0,1672:0,10,0,10
chr2	61722519	.	G	GA	979.14	PASS	AC=1;AF=0.73;AN=2;DP=2002;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:931,0,1097:29,13,23,14
chr2	61729258	.	A	G	1752.22	PASS	AC=1;AF=0.73;AN=2;DP=2833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,45:109:99:1751,0,3782:37,27,26,19
chr2	61729268	.	T	C	1681	PASS	AC=1;AF=0.73;AN=2;DP=2919;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,48:112:99:1792,0,3757:36,28,29,19
chr2	61749690	.	C	T	673.31	PASS	AC=1;AF=0.73;AN=2;DP=1718;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:728,0,385:10,7,17,13
chr2	61749716	.	C	T	608.39	PASS	AC=1;AF=0.73;AN=2;DP=2087;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,36:55:99:910,0,406:11,8,19,17
chr2	61761169	.	G	A	2578.68	PASS	AC=2;AF=0.977;AN=2;DP=3132;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3379,300,0:0,0,68,32
chr2	61764140	.	C	T	392.69	PASS	AC=1;AF=0.743;AN=2;DP=2675;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:933,0,1481:25,31,22,19
chr2	61764887	.	AACACACAC	AACACACACACAC,AACACACACACACACAC,AACACACACACACAC,AACACACACACACACACACACAC,AACACACACAC,AACACACACACACACACACAC,AACACACACACACACACAC,AACACAC,A,AACAC	169.91	PASS	AC=1,0,1,0,0,0,0,0,0,0;AF=0.181,0.028,0.236,0.014,0.125,0.028,0.083,0.028,0.083,0.014;AN=2;DP=449;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	1/3:9:86:0,0,7,2
chr2	61765074	.	G	A	820.59	PASS	AC=1;AF=0.667;AN=2;DP=1335;FractionInformativeReads=1;set=variant2-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:824,0,659:16,12,19,14
chr2	61765175	.	GGCC	GC,G	853.98	PASS	AC=1,0;AF=0.62,0.02;AN=2;DP=695;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:24:99:2,9,0,13
chr2	62053878	.	G	GA	105.18	PASS	AC=2;AF=0.984;AN=2;DP=150;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:71,6,0:0,0,0,2
chr2	62063093	.	TA	T	721.45	PASS	AC=1;AF=0.614;AN=2;DP=2245;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:477,0,166:8,6,17,10
chr2	62063341	.	TG	T	57.19	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;MQ=60;set=variant3-variant15-variant22-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:94:94,0,173:1,4,0,3
chr2	62066417	.	ATATAT	A	171.57	PASS	AC=1;AF=0.667;AN=2;DP=213;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant20-variant23-variant26-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:303,0,701:8,3,6,2
chr2	62066927	.	A	G	2581.82	PASS	AC=2;AF=0.955;AN=2;DP=3671;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3031,273,0:0,0,46,45
chr2	62069358	.	T	C	1262.67	PASS	AC=1;AF=0.5;AN=2;DP=1588;MQ=60;set=variant-variant10-variant12-variant14-variant15-variant19-variant21-variant22-variant25-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,40:105:99:1023,0,1564:32,33,24,16
chr2	62069528	.	C	T	820.61	PASS	AC=1;AF=0.5;AN=2;DP=1028;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,42:78:99:1054,0,845:14,22,14,28
chr2	62073918	.	C	T	804.29	PASS	AC=2;AF=0.667;AN=2;DP=3734;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3052,297,0:0,0,60,39
chr2	62074140	.	A	AAC	661.08	PASS	AC=2;AF=0.955;AN=2;DP=861;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:837,57,0:0,0,3,16
chr2	62081012	.	A	C	4205.8	PASS	AC=2;AF=0.955;AN=2;DP=9980;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,263:263:99:8226,789,0:0,0,154,109
chr2	62081217	.	A	G	3577.53	PASS	AC=2;AF=0.955;AN=2;DP=4510;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4618,429,0:0,0,44,99
chr2	62095571	.	CTTTTATTAGT	C	5272.41	PASS	AC=1;AF=0.5;AN=2;DP=297;FS=0.993;FractionInformativeReads=0.859;MQ=60;MQRankSum=2.015;QD=17.75;ReadPosRankSum=2.635;SOR=0.605;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:118,137:255:99:5310,0,6108:43,75,53,84
chr2	62095994	.	A	G	599.79	PASS	AC=2;AF=0.955;AN=2;DP=1001;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:826,69,0:0,0,6,17
chr2	62100380	.	G	T	521.96	PASS	AC=1;AF=0.5;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant22-variant24-variant27-variant28-variant29-variant30-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,32:80:99:903,0,1227:19,29,8,24
chr2	62104343	.	C	T	82.7	PASS	AC=2;AF=0.676;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:409,30,0:0,0,2,8
chr2	62107376	.	T	TC	1468.54	PASS	AC=2;AF=0.955;AN=2;DP=1632;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2041,156,0:0,0,38,13
chr2	62107632	.	G	A	185.17	PASS	AC=2;AF=0.558;AN=2;DP=749;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:956,78,0:0,0,6,20
chr2	62110551	.	CAAAA	C,CAA,CAAA,CA	191.92	PASS	AC=0,2,0,0;AF=0.021,0.292,0.208,0.021;AN=2;DP=314;set=variant3-variant4-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant39-variant40-variant42	GT:DP:GQ:SB	2/2:18:34:1,0,12,5
chr2	62110571	.	G	T	408.75	PASS	AC=1;AF=0.528;AN=2;DP=410;set=variant-variant4-variant5-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:539,0,240:6,4,13,4
chr2	62112221	.	G	GA	1070.81	PASS	AC=1;AF=0.654;AN=2;DP=2468;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:580,0,654:10,19,8,19
chr2	62112222	.	G	A	1079.86	PASS	AC=2;AF=0.667;AN=2;DP=2391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2273,188,0:0,0,20,43
chr2	62115776	.	G	A	1552.93	PASS	AC=1;AF=0.5;AN=2;DP=1361;MQ=60;set=variant3-variant15-variant22-variant24-variant27-variant28-variant29-variant30-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,101:189:99:2419,0,1928:41,47,46,55
chr2	62116031	.	CTT	CT,C	55.86	PASS	AC=1,0;AF=0.417,0.139;AN=2;DP=286;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant14-variant15-variant19-variant22-variant24-variant26-variant29-variant30-variant32-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:8:8:0,2,1,5
chr2	62196278	.	T	G	49.5	PASS	AC=1;AF=0.75;AN=2;DP=81;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant29-variant32-variant33-variant34-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:65:65,0,81:2,2,0,2
chr2	62228180	.	C	G	722.79	PASS	AC=1;AF=0.526;AN=2;DP=782;MQ=60;set=variant2-variant8-variant9-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant29-variant30-variant32-variant33-variant34-variant36-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:674,0,734:8,19,7,17
chr2	62373915	.	T	C	863.73	PASS	AC=1;AF=0.63;AN=2;DP=2663;set=variant-variant3-variant4-filterInvariant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant25-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:102,33:135:99:796,0,2561:54,48,18,15
chr2	62448855	.	G	A	59.18	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant11-variant15-variant34-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:391,0,264:7,1,9,3
chr2	62450631	.	A	G	2279.3	PASS	AC=1;AF=0.5;AN=2;DP=1495;MQ=60;set=variant7-variant8-variant15-variant25-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:138,133:271:99:3451,0,3651:78,60,72,61
chr2	62450743	.	T	C	4594.48	PASS	AC=1;AF=0.5;AN=2;DP=3428;MQ=60;set=variant7-variant8-variant11-variant15-variant25-variant34-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:204,222:426:99:5666,0,5345:112,92,131,91
chr2	62451422	.	A	G	5438.46	PASS	AC=1;AF=0.5;AN=2;DP=3101;MQ=60;set=variant7-variant8-variant15-variant25-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:294,272:566:99:6865,0,7238:121,173,100,172
chr2	62727445	.	G	A	1498.53	PASS	AC=1;AF=0.711;AN=2;DP=4227;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,76:138:99:1801,0,1313:33,29,41,35
chr2	62729297	.	T	C	278.12	PASS	AC=1;AF=0.536;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant13-variant15-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:397,0,214:6,0,10,1
chr2	62729653	.	A	G	538.18	PASS	AC=1;AF=0.5;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant18-variant31-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:51,54:105:99:1436,0,1357:24,27,24,30
chr2	62729674	.	T	C	1975.41	PASS	AC=2;AF=0.881;AN=2;DP=2867;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3863,311,0:0,0,47,56
chr2	62729747	.	G	GA	2105.85	PASS	AC=2;AF=0.881;AN=2;DP=3045;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2930,283,0:0,0,49,45
chr2	62733189	.	C	T	3485.4	PASS	AC=1;AF=0.538;AN=2;DP=4343;MQ=60;set=variant10-variant12-variant13-variant15-variant18-variant21-variant22-variant28-variant31-variant32-variant34-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:200,184:384:99:4662,0,4878:89,111,82,102
chr2	62733201	.	A	T	2615.82	PASS	AC=1;AF=0.5;AN=2;DP=1786;MQ=60;set=variant13-variant15-variant18-variant31-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:179,160:339:99:4154,0,4281:79,100,66,94
chr2	62733253	.	C	T	2769.93	PASS	AC=1;AF=0.542;AN=2;DP=4893;MQ=60;set=variant6-variant10-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:109,130:239:99:3341,0,2975:34,75,53,77
chr2	62738883	.	C	T	562.37	PASS	AC=2;AF=0.756;AN=2;DP=2075;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1347,135,0:0,0,30,15
chr2	62738931	.	G	C	766.02	PASS	AC=2;AF=0.756;AN=2;DP=3080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1811,188,0:0,0,36,27
chr2	62739135	.	A	C	508.23	PASS	AC=2;AF=0.881;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:535,42,0:0,0,1,13
chr2	62901216	.	A	G	2028.47	PASS	AC=1;AF=0.5;AN=2;DP=160;FS=0.584;FractionInformativeReads=1;MQ=60;MQRankSum=-0.137;QD=12.68;ReadPosRankSum=2.063;SOR=0.786;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:77,83:160:99:2057,0,1890:37,40,38,45
chr2	63101454	.	T	G	352.65	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant19	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:381,0,235:6,2,10,2
chr2	63170905	.	A	G	526.38	PASS	AC=1;AF=0.5;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant16-variant18-variant31-variant32-variant34-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,32:52:99:766,0,503:14,6,18,14
chr2	63182611	.	G	GT	816.04	PASS	AC=1;AF=0.567;AN=2;DP=748;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant11-variant15-variant28-variant29-variant30-variant35-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:591,0,1015:34,10,23,7
chr2	63277843	.	C	G	95.44	PASS	AC=1;AF=0.72;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant11-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:142,0,188:5,1,4,2
chr2	63380809	.	G	A	61.77	PASS	AC=2;AF=0.914;AN=2;DP=96;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,2,4
chr2	63486429	.	C	T	793.21	PASS	AC=1;AF=0.629;AN=2;DP=2606;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,42:89:99:989,0,1209:30,17,23,19
chr2	63540324	.	A	G	1350.81	PASS	AC=1;AF=0.5;AN=2;DP=1474;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant13-variant15-variant16-variant22-variant30-variant31-variant32-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:84,62:146:99:1468,0,2092:46,38,34,28
chr2	63540523	.	A	T	812.02	PASS	AC=2;AF=0.725;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:776,60,0:0,0,2,18
chr2	63605772	.	A	G	528.08	PASS	AC=2;AF=0.718;AN=2;DP=889;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:757,63,0:0,0,4,17
chr2	63609017	.	A	T	1094.1	PASS	AC=1;AF=0.629;AN=2;DP=1156;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:517,0,405:10,5,14,6
chr2	63609053	.	G	A	762.65	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=2.35;FractionInformativeReads=1;MQ=60;MQRankSum=-1.169;QD=13.15;ReadPosRankSum=0.561;SOR=1.09;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:791,0,671:17,10,22,9
chr2	63631889	.	A	C	1101.87	PASS	AC=1;AF=0.591;AN=2;DP=1030;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,17:44:99:426,0,897:4,23,5,12
chr2	63631921	.	C	T	645.99	PASS	AC=1;AF=0.594;AN=2;DP=532;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:201,0,395:2,10,2,5
chr2	63660902	.	C	T	639.79	PASS	AC=1;AF=0.5;AN=2;DP=489;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant22-variant31-variant32	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1131,0,1490:39,20,32,21
chr2	63669625	.	T	C	6557.85	PASS	AC=2;AF=0.731;AN=2;DP=7041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,202:202:99:6914,606,0:0,0,89,113
chr2	63669666	.	G	A	2679.36	PASS	AC=1;AF=0.531;AN=2;DP=3334;MQ=60;set=variant-variant3-variant4-variant7-variant13-variant15-variant16-variant22-variant23-variant30-variant31-variant32-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:127,112:239:99:2898,0,3563:71,56,64,48
chr2	63670274	.	T	A	269.03	PASS	AC=1;AF=0.5;AN=2;DP=365;MQ=60;set=variant2-variant4-variant5-variant8-variant9-variant10-variant12-variant15-variant16-variant21-variant23-variant24-variant29-variant32-variant34-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,22:33:99:525,0,317:2,9,10,12
chr2	63719887	.	T	C	108.67	PASS	AC=1;AF=0.577;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant13-variant15-variant22-variant23-variant31-variant32-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:319,0,201:6,1,8,3
chr2	63720210	.	A	G	154.82	PASS	AC=2;AF=0.73;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:209,15,0:0,0,0,5
chr2	63798333	.	C	T	1982.59	PASS	AC=2;AF=0.718;AN=2;DP=2174;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2527,248,0:0,0,50,33
chr2	63815206	.	A	G	117.36	PASS	AC=1;AF=0.536;AN=2;DP=260;MQ=60;set=variant-variant7-variant13-variant15-variant16-variant22-variant23-variant30-variant31-variant32-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:478,0,362:10,1,13,2
chr2	63815801	.	A	C	884.34	PASS	AC=1;AF=0.567;AN=2;DP=1012;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant13-variant15-variant16-variant22-variant23-variant30-variant31-variant32-variant34-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:49,33:82:99:850,0,1387:29,20,18,15
chr2	63816672	.	C	G	912.56	PASS	AC=2;AF=0.718;AN=2;DP=780;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:973,78,0:0,0,4,22
chr2	63822785	.	T	C	2099.61	PASS	AC=2;AF=0.744;AN=2;DP=3070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2759,273,0:0,0,46,45
chr2	63826528	.	T	G	151.77	PASS	AC=2;AF=0.743;AN=2;DP=308;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:333,24,0:0,0,0,8
chr2	63849491	.	T	C	4999.94	PASS	AC=1;AF=0.559;AN=2;DP=2201;FractionInformativeReads=1;set=variant2-variant4-variant5-variant8-variant9-variant10-variant12-variant15-variant16-variant20-variant21-variant24-variant32-variant34-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,56:125:99:1470,0,1858:42,27,32,24
chr2	64068788	.	G	T	85.7	PASS	AC=2;AF=0.808;AN=2;DP=460;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:342,24,0:0,0,7,1
chr2	64069277	.	GA	G,GAA	75.03	PASS	AC=1,0;AF=0.444,0.056;AN=2;DP=364;MQ=60;set=filterInvariant2-filterInvariant6-filterInvariant10-filterInvariant15-variant26-variant30-variant38-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/1:39:90:15,16,5,3
chr2	64069311	.	G	C	1296.7	PASS	AC=1;AF=0.5;AN=2;DP=716;MQ=60;set=variant4-variant10-variant15-variant16-variant22-variant23-variant32-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:52,44:96:99:1171,0,1503:32,20,27,17
chr2	64069732	.	G	A	906.41	PASS	AC=2;AF=0.793;AN=2;DP=2985;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2958,264,0:0,0,28,60
chr2	64082619	.	G	C	194.27	PASS	AC=1;AF=0.538;AN=2;DP=502;MQ=60;set=variant-variant4-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:541,0,242:5,7,6,14
chr2	64082654	.	GTTTTT	GTTT,GTTTTTTT,GTTTTTT,GTTTT,GT,GTTTTTTTT,GTT,G	74.11	PASS	AC=0,0,0,0,0,0,1,0;AF=0.111,0.093,0.093,0.056,0.111,0.019,0.093,0.019;AN=2;DP=660;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant37-variant41-filterInvariant42-filterInvariant43	GT:DP:GQ:SB	0/7:11:93:0,8,0,3
chr2	64084005	.	G	A	865.1	PASS	AC=1;AF=0.538;AN=2;DP=661;MQ=60;set=variant-variant4-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:751,0,861:6,23,10,20
chr2	64084098	.	T	C	85.48	PASS	AC=1;AF=0.6;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant38	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:234,0,102:0,3,1,5
chr2	64085114	.	G	A	1328.43	PASS	AC=2;AF=0.78;AN=2;DP=4477;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3552,347,0:0,0,62,54
chr2	64089748	.	C	A	450.24	PASS	AC=2;AF=0.78;AN=2;DP=974;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:722,57,0:0,0,17,2
chr2	64117423	.	G	A	304.68	PASS	AC=1;AF=0.545;AN=2;DP=120;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:132,0,3266:0,12,0,4
chr2	64117425	.	G	T	304.68	PASS	AC=1;AF=0.545;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:132,0,3266:0,12,0,4
chr2	64117426	.	C	A	304.68	PASS	AC=1;AF=0.545;AN=2;DP=114;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:132,0,3266:0,12,0,4
chr2	64117428	.	AC	A	295.64	PASS	AC=1;AF=0.55;AN=2;DP=101;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:132,0,3266:0,12,0,4
chr2	64117431	.	T	TAG	253.65	PASS	AC=1;AF=0.55;AN=2;DP=96;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:132,0,3266:0,11,0,4
chr2	64118158	.	TA	TAA,TAAA,T	58.95	PASS	AC=1,0,0;AF=0.524,0.024,0.071;AN=2;DP=274;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant11-variant13-variant14-variant15-variant20-variant21-variant25-variant27-variant28-variant29-variant34-variant35-variant38-variant39-variant42-variant43	GT:DP:GQ:SB	0/1:21:99:12,2,7,0
chr2	64124440	.	TAA	T	307.53	PASS	AC=1;AF=0.545;AN=2;DP=203;MQ=60;set=variant-variant7-variant15-variant16-variant22-variant23-variant30-variant32-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:339,0,505:11,2,7,2
chr2	64126765	.	A	G	771.17	PASS	AC=1;AF=0.542;AN=2;DP=603;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:627,0,823:8,13,11,16
chr2	64126775	.	C	A	348.8	PASS	AC=1;AF=0.587;AN=2;DP=996;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant20-variant21-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:558,0,962:10,15,8,14
chr2	64139901	.	A	T	377.99	PASS	AC=2;AF=0.857;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:537,42,0:0,0,2,12
chr2	64140301	.	A	T	2372.06	PASS	AC=2;AF=0.841;AN=2;DP=2328;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2355,227,0:0,0,48,28
chr2	64143884	.	T	C	142.42	PASS	AC=1;AF=0.607;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:544,0,247:7,0,14,2
chr2	64195997	.	CAA	CAAA,CA,C	410.82	PASS	AC=1,0,0;AF=0.406,0.078,0.016;AN=2;DP=1138;MQ=60;set=variant-filterInvariant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant32-filterInvariant34-variant36-variant37-variant38-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:56:99:22,13,11,10
chr2	64210875	.	C	A	123.45	PASS	AC=1;AF=0.545;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:183,0,258:7,2,6,1
chr2	64331815	.	CTT	CT,CTTTT,C	209.92	PASS	AC=1,0,0;AF=0.464,0.012,0.024;AN=2;DP=1612;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:33:99:10,5,16,2
chr2	64371109	.	T	TG	149.72	PASS	AC=2;AF=1;AN=2;DP=568;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:63:782,63,0:0,0,16,4
chr2	64371297	.	G	C	1134.55	PASS	AC=1;AF=0.5;AN=2;DP=311;FractionInformativeReads=1;MQ=60;set=variant15-variant31-variant32	GT:AD:DP:GQ:PL:SB	0/1:59,48:107:99:1163,0,1428:27,32,19,29
chr2	64371569	.	A	G	935.43	PASS	AC=1;AF=0.63;AN=2;DP=1950;MQ=60;set=variant-variant2-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,37:89:99:1004,0,1398:26,26,17,20
chr2	64371615	.	C	G	1790.87	PASS	AC=1;AF=0.805;AN=2;DP=2563;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,28:73:99:587,0,1003:21,24,17,11
chr2	64567680	.	T	G	139.7	PASS	AC=1;AF=0.679;AN=2;DP=293;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant12-variant15-variant17-variant21-variant23-variant26-variant29-variant31-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:135,0,310:9,2,4,0
chr2	64567916	.	C	G	706.62	PASS	AC=1;AF=0.679;AN=2;DP=1129;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant12-variant15-variant17-variant21-variant23-variant26-variant29-variant31-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,56:113:99:1182,0,1270:25,32,26,30
chr2	64682364	.	A	C	829.52	PASS	AC=1;AF=0.676;AN=2;DP=783;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:280,0,234:6,2,8,0
chr2	64687147	.	GT	GTT,G	86.95	PASS	AC=1,0;AF=0.396,0.104;AN=2;DP=2012;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant7-filterInvariant8-variant10-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant22-variant23-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant42	GT:DP:GQ:SB	0/1:84:99:30,33,14,7
chr2	64687777	.	G	T	2568.11	PASS	AC=1;AF=0.75;AN=2;DP=6500;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,141:243:99:3462,0,2451:56,46,74,67
chr2	64796479	.	C	T	324.79	PASS	AC=1;AF=0.588;AN=2;DP=663;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:391,0,409:0,11,3,10
chr2	64796847	.	A	G	1793.56	PASS	AC=1;AF=0.591;AN=2;DP=3686;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,76:145:99:1765,0,1760:24,45,30,46
chr2	64796932	.	G	A	456.78	PASS	AC=1;AF=0.591;AN=2;DP=854;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:746,0,319:0,10,2,19
chr2	64799937	.	TAA	T	84.03	PASS	AC=1;AF=0.603;AN=2;DP=394;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:232,0,344:10,1,7,1
chr2	64819380	.	G	A	1891.05	PASS	AC=1;AF=0.526;AN=2;DP=2990;MQ=60;set=variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant17-variant20-variant22-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:130,101:231:99:2457,0,3138:76,54,64,37
chr2	64859377	.	CTTT	CT,CTT,C	2176.63	PASS	AC=0,1,0;AF=0.227,0.489,0.011;AN=2;DP=8271;set=Intersection	GT:DP:GQ:SB	0/2:188:99:44,52,36,56
chr2	64859679	.	T	C	2968.94	PASS	AC=2;AF=0.833;AN=2;DP=4231;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3096,316,0:0,0,55,51
chr2	64860017	.	GA	G	2933.35	PASS	AC=2;AF=0.63;AN=2;DP=5227;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant18-variant21-variant22-variant27-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,224:226:99:6864,616,0:1,1,112,112
chr2	64860681	.	C	T	1472.38	PASS	AC=1;AF=0.5;AN=2;DP=625;MQ=60;set=variant-variant5-variant7-variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:55,73:128:99:1953,0,1388:21,34,27,46
chr2	64862055	.	A	G	550.92	PASS	AC=2;AF=0.63;AN=2;DP=1389;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant18-variant21-variant22-variant27-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2780,278,0:0,0,52,41
chr2	64881017	.	C	G	1186.77	PASS	AC=2;AF=1;AN=2;DP=1199;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1590,108,0:0,0,14,22
chr2	64881018	.	G	C	1186.77	PASS	AC=2;AF=1;AN=2;DP=1179;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1590,108,0:0,0,14,22
chr2	65231063	.	GT	G	962.71	PASS	AC=2;AF=0.6;AN=2;DP=1576;MQ=60;set=variant2-variant14-variant15-variant18-variant19-variant21-variant26-variant28-variant29-variant32-variant33-variant36-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3052,309,0:0,0,52,51
chr2	65250453	.	A	ATGTGTGTTG	1309.6	PASS	AC=1;AF=0.5;AN=2;DP=560;MQ=60;set=variant5-variant7-variant8-variant4-variant15	GT:AD:DP:GQ:PL:SB	0/1:64,56:120:99:2106,0,3173:12,52,12,44
chr2	65283702	.	G	GC	778.93	PASS	AC=2;AF=1;AN=2;DP=1532;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1423,120,0:0,0,12,28
chr2	65283745	.	C	CG	261.39	PASS	AC=2;AF=1;AN=2;DP=791;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:633,51,0:0,0,3,14
chr2	65296798	.	G	A	1560.17	PASS	AC=1;AF=0.536;AN=2;DP=2209;MQ=60;set=variant-variant3-variant7-variant12-variant14-variant15-variant21-variant22-variant30-variant33-variant35-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:90,83:173:99:2044,0,2354:47,43,36,47
chr2	65298839	.	A	G	1586.16	PASS	AC=1;AF=0.526;AN=2;DP=3283;MQ=60;set=variant-variant2-variant3-variant7-variant12-variant13-variant14-variant15-variant17-variant21-variant22-variant23-variant28-variant30-variant33-variant35-variant36-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:103,109:212:99:2644,0,2493:44,59,48,61
chr2	65309988	.	T	C	32.42	PASS	AC=2;AF=0.782;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:622,48,0:0,0,3,13
chr2	65310831	.	A	T	491.56	PASS	AC=2;AF=0.768;AN=2;DP=1488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1542,138,0:0,0,33,13
chr2	65311555	.	C	T	2002.72	PASS	AC=2;AF=0.78;AN=2;DP=4633;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4560,422,0:0,0,81,60
chr2	65311656	.	TA	TAA,TAAA,T	1713.95	PASS	AC=1,1,0;AF=0.511,0.216,0.011;AN=2;DP=8450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	1/2:197:99:2,3,104,88
chr2	65312217	.	C	T	4777.8	PASS	AC=2;AF=0.81;AN=2;DP=14498;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,402:402:99:12303,1203,0:0,0,197,205
chr2	65313215	.	C	CAG	664.41	PASS	AC=2;AF=0.81;AN=2;DP=2261;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2825,190,0:0,0,33,30
chr2	65315880	.	G	C	434.73	PASS	AC=2;AF=0.768;AN=2;DP=1237;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1171,93,0:0,0,5,26
chr2	65315903	.	G	A	355.62	PASS	AC=2;AF=0.763;AN=2;DP=782;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:877,69,0:0,0,5,18
chr2	65473930	.	AAAATTTTC	A	1249.53	PASS	AC=1;AF=0.75;AN=2;DP=2152;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,43:74:99:1665,0,2880:10,21,16,27
chr2	65478371	.	T	A	103.61	PASS	AC=1;AF=0.765;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:502,0,283:0,8,2,13
chr2	65481008	.	A	C	2703.76	PASS	AC=1;AF=0.864;AN=2;DP=4043;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:82,64:146:99:1388,0,1837:37,45,28,36
chr2	65488538	.	G	A	3694.14	PASS	AC=1;AF=0.864;AN=2;DP=3835;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1328,0,1341:26,33,19,34
chr2	65495570	.	A	C	2671.74	PASS	AC=1;AF=0.864;AN=2;DP=2012;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,28:76:99:1022,0,4557:32,16,24,4
chr2	65495571	.	T	C	2709.15	PASS	AC=1;AF=0.864;AN=2;DP=2039;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,28:77:99:1022,0,4557:33,16,24,4
chr2	65495573	.	A	AC	2700.03	PASS	AC=1;AF=0.864;AN=2;DP=2086;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,28:79:99:1087,0,4551:34,17,24,4
chr2	65495887	.	G	A	5184.3	PASS	AC=2;AF=0.898;AN=2;DP=8146;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,242:242:99:7121,723,0:0,0,110,132
chr2	65496058	.	A	G	2027.8	PASS	AC=1;AF=0.5;AN=2;DP=293;FractionInformativeReads=1;set=variant15-variant17-variant33	GT:AD:DP:GQ:PL:SB	0/1:55,69:124:99:2056,0,1581:42,13,43,26
chr2	65496144	.	A	G	8818.26	PASS	AC=1;AF=0.864;AN=2;DP=10210;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:153,137:290:99:3011,0,3693:86,67,71,66
chr2	65497352	.	A	G	1190.71	PASS	AC=2;AF=1;AN=2;DP=2417;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1797,200,0:0,0,31,36
chr2	65497422	.	CTGTT	C	655.46	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.411;FractionInformativeReads=0.951;MQ=60;MQRankSum=-1.056;QD=15.99;ReadPosRankSum=1.733;SOR=0.357;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:693,0,827:5,16,6,12
chr2	65539641	.	C	T	2207.77	PASS	AC=1;AF=0.62;AN=2;DP=3366;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant19-variant20-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,83:173:99:2244,0,2330:46,44,44,39
chr2	65540905	.	C	G	3396.1	PASS	AC=1;AF=0.618;AN=2;DP=5136;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant26-variant27-variant34-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:168,217:385:99:5319,0,4065:76,92,104,113
chr2	65559027	.	A	G	3115.51	PASS	AC=1;AF=0.662;AN=2;DP=4490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,66:151:99:1476,0,2071:44,41,33,33
chr2	65561392	.	C	T	1567.01	PASS	AC=1;AF=0.524;AN=2;DP=2481;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,72:159:99:1694,0,2033:49,38,38,34
chr2	65571277	.	A	AC	582.45	PASS	AC=1;AF=0.524;AN=2;DP=687;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:523,0,668:12,1,12,1
chr2	65571280	.	A	AC	663.42	PASS	AC=1;AF=0.524;AN=2;DP=783;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:577,0,788:18,1,12,3
chr2	65571284	.	A	C	715.3	PASS	AC=1;AF=0.524;AN=2;DP=886;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:608,0,814:19,1,13,4
chr2	65593439	.	A	AAAC,AAACAACAACAAC,AAACAACAAC	257.51	PASS	AC=0,1,0;AF=0.155,0.397,0.086;AN=2;DP=346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:9:99:4,0,5,0
chr2	65604914	.	A	G	993.11	PASS	AC=2;AF=0.762;AN=2;DP=2017;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1807,168,0:0,0,20,36
chr2	66665146	.	T	C	1315.03	PASS	AC=1;AF=0.695;AN=2;DP=5530;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,83:162:99:1971,0,2032:30,49,34,49
chr2	66667186	.	C	T	191.7	PASS	AC=1;AF=0.713;AN=2;DP=805;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:226,0,289:4,8,5,9
chr2	66667200	.	A	AACACACACACAC,AACACACAC,AAC,AACACACACACACAC,AACAC,AACACACACACACACAC,AACACACACAC,AACACACACACACACACAC	64.04	PASS	AC=1,0,0,0,0,0,0,0;AF=0.243,0.029,0.086,0.257,0.014,0.129,0.014,0.014;AN=2;DP=516;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:13:99:1,3,2,7
chr2	66794923	.	A	AT	3959.97	PASS	AC=2;AF=0.977;AN=2;DP=7234;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5098,529,0:0,0,93,83
chr2	66795906	.	T	C	2080.94	PASS	AC=1;AF=0.5;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant20-variant29	GT:AD:DP:GQ:PL:SB	0/1:113,108:221:99:2611,0,2933:50,63,46,62
chr2	66796098	.	G	GT	254.28	PASS	AC=1;AF=0.5;AN=2;DP=60;MQ=60;set=variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:292,0,461:10,10,9,5
chr2	66798282	.	G	T	512.37	PASS	AC=2;AF=0.977;AN=2;DP=901;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:814,69,0:0,0,19,4
chr2	66800974	.	C	A	2035.19	PASS	AC=2;AF=0.977;AN=2;DP=2318;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2314,215,0:0,0,22,50
chr2	67630980	.	G	A	3779.42	PASS	AC=2;AF=0.825;AN=2;DP=5077;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,155:156:99:4780,442,0:0,1,75,80
chr2	67631831	.	G	A	1559.38	PASS	AC=2;AF=0.667;AN=2;DP=3052;FractionInformativeReads=1;set=variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4869,434,0:0,0,75,70
chr2	67632125	.	C	T	3945.89	PASS	AC=2;AF=0.825;AN=2;DP=4353;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3895,379,0:0,0,66,61
chr2	67637196	.	G	A	4944.27	PASS	AC=2;AF=0.977;AN=2;DP=8169;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,255:255:99:7705,764,0:0,0,132,123
chr2	68352515	.	A	C	2559.46	PASS	AC=1;AF=0.647;AN=2;DP=8090;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,119:258:99:2945,0,3875:62,77,51,68
chr2	68357236	.	TGAGAGAGA	T,TGA,TGAGA	273.91	PASS	AC=0,1,0;AF=0.563,0.063,0.083;AN=2;DP=685;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant28-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant44	GT:DP:GQ:SB	0/2:33:99:1,24,0,8
chr2	68357247	.	G	T	241.77	PASS	AC=1;AF=0.857;AN=2;DP=201;FS=0;set=variant8-variant12-variant13-variant15-variant16-variant22-variant25-variant33-variant35-variant37-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:99:264,0,2446:1,20,0,8
chr2	68358341	.	T	C	787.66	PASS	AC=1;AF=0.661;AN=2;DP=2297;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,46:97:99:1047,0,1302:35,16,29,17
chr2	68358653	.	T	C	211.57	PASS	AC=1;AF=0.661;AN=2;DP=961;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:334,0,480:5,13,7,9
chr2	68385097	.	A	G	1729.64	PASS	AC=1;AF=0.769;AN=2;DP=7780;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,156:274:99:3991,0,2992:60,58,86,70
chr2	68388823	.	A	G	1604.94	PASS	AC=1;AF=0.607;AN=2;DP=3932;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant33-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,75:161:99:1708,0,1978:44,42,42,33
chr2	68389276	.	G	GA	282.62	PASS	AC=1;AF=0.718;AN=2;DP=1790;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:559,0,703:18,13,18,7
chr2	68389481	.	CTT	C	3293.3	PASS	AC=1;AF=0.609;AN=2;DP=3737;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant25-variant27-variant33-variant35-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,87:203:99:3292,0,4959:50,66,37,50
chr2	68400708	.	AT	A,ATT,ATTT	219.82	PASS	AC=1,0,0;AF=0.395,0.158,0.026;AN=2;DP=588;set=variant7-variant8-variant9-variant10-filterInvariant12-variant14-variant15-variant16-variant17-filterInvariant20-variant21-variant28-variant29-variant30-variant32-filterInvariant33-variant36-variant43-variant44	GT:DP:GQ:SB	0/1:17:29:2,5,2,8
chr2	68402012	.	G	T	920.58	PASS	AC=1;AF=0.789;AN=2;DP=879;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:392,0,419:8,7,6,10
chr2	68402153	.	TA	T	3242.12	PASS	AC=1;AF=0.782;AN=2;DP=3327;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,56:114:99:1755,0,1798:29,29,30,26
chr2	68402786	.	TTTGCAGTTTC	T	8212.68	PASS	AC=1;AF=0.782;AN=2;DP=6708;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,100:209:99:3833,0,6439:63,46,64,36
chr2	68402830	.	G	C	11419.3	PASS	AC=1;AF=0.782;AN=2;DP=8503;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,146:282:99:5719,0,6454:75,61,86,60
chr2	68402835	.	A	G	11597.5	PASS	AC=1;AF=0.782;AN=2;DP=8833;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,156:300:99:5907,0,6460:80,64,91,65
chr2	68406141	.	A	AAAAAG,AAAAAAG,AAAAG,AAAG,AAAAAAAG	1622.28	PASS	AC=0,1,0,0,0;AF=0.347,0.181,0.083,0.014,0.014;AN=2;DP=3494;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:88:99:26,26,14,22
chr2	68407003	.	A	T	7073.56	PASS	AC=1;AF=0.5;AN=2;DP=603;FS=1.733;FractionInformativeReads=1;MQ=60;MQRankSum=0.039;QD=11.73;ReadPosRankSum=-0.355;SOR=0.805;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:312,291:603:99:7102,0,7977:157,155,137,154
chr2	68407267	.	G	A	5380.09	PASS	AC=1;AF=0.5;AN=2;DP=408;FS=1.106;FractionInformativeReads=1;MQ=60;MQRankSum=2.743;QD=13.19;ReadPosRankSum=-0.338;SOR=0.793;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:185,223:408:99:5408,0,4622:84,101,96,127
chr2	68407926	.	A	G	7655.39	PASS	AC=1;AF=0.607;AN=2;DP=7956;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant33-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,172:341:99:3772,0,3893:85,84,84,88
chr2	68415767	.	G	A	3767.93	PASS	AC=1;AF=0.661;AN=2;DP=3992;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,70:143:99:1731,0,1740:31,42,33,37
chr2	68444143	.	TAC	T	1399.39	PASS	AC=1;AF=0.556;AN=2;DP=910;set=variant7-variant8-variant11-variant14-variant15-variant16-variant21-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:808,0,831:14,8,20,11
chr2	68444171	.	C	G,CGCAG,CACGCAG,CACACGCAG	3275.22	PASS	AC=0,0,1,0;AF=0.317,0.083,0.317,0.017;AN=2;DP=1969;set=variant7-variant8-variant11-variant14-variant15-variant3-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant6-variant37-variant38-variant39-variant40-variant12-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:69:99:25,18,16,10
chr2	68479576	.	G	A	1375.2	PASS	AC=1;AF=0.661;AN=2;DP=2055;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,37:81:99:834,0,1060:26,18,23,14
chr2	68479671	.	A	G	924.42	PASS	AC=1;AF=0.782;AN=2;DP=2285;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:947,0,945:21,17,19,20
chr2	68479717	.	G	GGGCGGAGGCGGGGGCGCGCGCGGGCCGGC	567.21	PASS	AC=1;AF=0.789;AN=2;DP=1444;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:684,0,1503:12,15,8,10
chr2	68483396	.	A	T	834.7	PASS	AC=1;AF=0.661;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:424,0,463:4,11,5,11
chr2	68511506	.	GA	G,GAA	1874.76	PASS	AC=1,0;AF=0.634,0.159;AN=2;DP=2431;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:61:99:14,17,15,15
chr2	68546304	.	T	C	283.38	PASS	AC=2;AF=0.667;AN=2;DP=407;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:455,42,0:0,0,9,5
chr2	68546374	.	T	C	353.58	PASS	AC=2;AF=0.667;AN=2;DP=706;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1018,96,0:0,0,19,13
chr2	68546449	.	G	A	336.55	PASS	AC=2;AF=0.574;AN=2;DP=711;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1042,110,0:0,0,18,19
chr2	68592584	.	T	C	1364	PASS	AC=1;AF=0.838;AN=2;DP=3247;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,65:106:99:1638,0,940:20,21,25,40
chr2	68613710	.	G	A	5390.74	PASS	AC=1;AF=0.58;AN=2;DP=3369;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,82:160:99:2095,0,2025:43,35,41,41
chr2	68615395	.	C	T	1120.77	PASS	AC=1;AF=0.58;AN=2;DP=532;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:564,0,323:9,1,14,4
chr2	68615654	.	T	C	4257.05	PASS	AC=1;AF=0.58;AN=2;DP=2706;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,58:117:99:1582,0,1418:28,31,21,37
chr2	68620410	.	T	A	2751.47	PASS	AC=1;AF=0.58;AN=2;DP=1932;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:1003,0,1290:19,29,16,20
chr2	68621338	.	G	T	2382.57	PASS	AC=1;AF=0.621;AN=2;DP=1843;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,34:62:99:814,0,707:16,12,16,18
chr2	68621427	.	G	A	1475.99	PASS	AC=1;AF=0.58;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:360,0,513:4,12,3,9
chr2	68622658	.	C	T	736.22	PASS	AC=1;AF=0.672;AN=2;DP=634;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:416,0,252:7,0,11,0
chr2	68622914	.	G	A	4800.14	PASS	AC=1;AF=0.838;AN=2;DP=7006;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,120:231:99:3082,0,2712:54,57,52,68
chr2	68622952	.	G	C	4877.95	PASS	AC=1;AF=0.667;AN=2;DP=4553;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,94:181:99:2470,0,2159:38,49,36,58
chr2	68623270	.	C	T	1951.85	PASS	AC=1;AF=0.577;AN=2;DP=706;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:1051,0,2220:10,15,17,9
chr2	68623274	.	T	C	1951.77	PASS	AC=1;AF=0.667;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:1177,0,2323:11,13,17,9
chr2	68623279	.	TAA	TA,T	429.45	PASS	AC=0,1;AF=0.275,0.55;AN=2;DP=1189;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:55:99:13,13,17,12
chr2	68623302	.	A	G	1801.28	PASS	AC=1;AF=0.667;AN=2;DP=1003;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:1257,0,2038:10,11,19,13
chr2	68623652	.	T	C	978.6	PASS	AC=1;AF=0.838;AN=2;DP=1279;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:244,0,532:10,10,3,7
chr2	68623843	.	GA	G	799.17	PASS	AC=1;AF=0.667;AN=2;DP=928;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:301,0,364:11,5,9,5
chr2	68623915	.	T	C	1865.69	PASS	AC=1;AF=0.667;AN=2;DP=2062;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:781,0,786:18,15,19,13
chr2	68624260	.	G	A	8649.25	PASS	AC=1;AF=0.667;AN=2;DP=7555;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:151,125:276:99:2767,0,4044:73,78,64,61
chr2	68753240	.	T	A	597.16	PASS	AC=1;AF=0.607;AN=2;DP=704;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:473,0,930:22,14,13,8
chr2	68756151	.	A	G	2635.87	PASS	AC=1;AF=0.5;AN=2;DP=1492;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:96,93:189:99:2037,0,2396:53,43,46,47
chr2	68762501	.	G	A	1210.08	PASS	AC=1;AF=0.5;AN=2;DP=1150;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,82:172:99:1880,0,2137:37,53,36,46
chr2	68765205	.	C	T	1487.2	PASS	AC=1;AF=0.5;AN=2;DP=786;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1345,0,1392:32,27,29,24
chr2	68794528	.	G	T	647.13	PASS	AC=1;AF=0.607;AN=2;DP=865;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,46:74:99:1291,0,715:9,19,14,32
chr2	68805917	.	C	T	3533.59	PASS	AC=1;AF=0.5;AN=2;DP=2491;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:145,146:291:99:3955,0,3758:78,67,75,71
chr2	68806585	.	G	A	11871.7	PASS	AC=1;AF=0.556;AN=2;DP=3636;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:224,244:468:99:5715,0,5436:108,116,113,131
chr2	68806672	.	A	AT	5157.25	PASS	AC=1;AF=0.607;AN=2;DP=3463;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:120,133:253:99:4557,0,4009:37,83,49,84
chr2	68806690	.	TG	T	3348.58	PASS	AC=1;AF=0.607;AN=2;DP=2896;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:102,117:219:99:3502,0,2950:31,71,39,78
chr2	68807224	.	C	T	627.07	PASS	AC=1;AF=0.5;AN=2;DP=639;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1181,0,1350:15,32,19,28
chr2	68882468	.	T	C	7388.2	PASS	AC=1;AF=0.542;AN=2;DP=7247;MQ=60;set=variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant30-variant31-variant32-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:189,179:368:99:4730,0,4736:91,98,81,98
chr2	68882661	.	A	G	1185.03	PASS	AC=1;AF=0.5;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:64,45:109:99:1213,0,1672:23,41,13,32
chr2	68882783	.	A	C	120.59	PASS	AC=1;AF=0.5;AN=2;DP=28;FractionInformativeReads=1;MQ=60;set=variant15-variant34	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:149,0,235:0,7,3,2
chr2	68962259	.	T	C	1273.87	PASS	AC=1;AF=0.5;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant24-variant30-variant34-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:36,52:88:99:1302,0,915:24,12,32,20
chr2	68962570	.	G	A	623.8	PASS	AC=1;AF=0.5;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant24-variant30-variant34-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:652,0,526:5,14,10,16
chr2	69002760	.	C	T	1545.29	PASS	AC=1;AF=0.538;AN=2;DP=2552;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant12-variant15-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,55:117:99:1325,0,1555:36,26,33,22
chr2	69009304	.	C	T	286.64	PASS	AC=1;AF=0.581;AN=2;DP=605;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:175,0,319:8,4,5,1
chr2	69034249	.	T	C	237.16	PASS	AC=1;AF=0.607;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant12-variant15-variant16-variant17-variant19-variant20-variant24-variant29-variant30-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:769,0,591:7,3,15,3
chr2	69034258	.	G	A	750.65	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.633;QD=21.45;ReadPosRankSum=0.286;SOR=0.978;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:779,0,720:10,4,16,5
chr2	69040500	.	G	A	1419.13	PASS	AC=1;AF=0.6;AN=2;DP=1526;MQ=60;set=variant5-variant8-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant29-variant30-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1301,0,1389:26,30,23,31
chr2	69043264	.	CT	C	1151.17	PASS	AC=1;AF=0.636;AN=2;DP=1820;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,31:51:99:1158,0,899:11,9,18,13
chr2	69043266	.	T	A	578.21	PASS	AC=1;AF=0.636;AN=2;DP=1835;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:688,0,959:12,10,17,12
chr2	69043539	.	G	C	566.89	PASS	AC=1;AF=0.797;AN=2;DP=813;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:233,0,179:1,4,3,6
chr2	69044064	.	A	C	1359.9	PASS	AC=1;AF=0.6;AN=2;DP=2150;MQ=60;set=variant5-variant8-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant29-variant30-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:76,82:158:99:1988,0,1684:40,36,44,38
chr2	69049939	.	G	T	1561.61	PASS	AC=1;AF=0.6;AN=2;DP=1574;MQ=60;set=variant5-variant8-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant29-variant30-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:74,56:130:99:1357,0,2021:34,40,29,27
chr2	69093312	.	A	G	2140.22	PASS	AC=1;AF=0.5;AN=2;DP=1050;MQ=60;set=variant15-variant24-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,89:209:99:2168,0,3336:68,52,43,46
chr2	69173002	.	C	T	1400.47	PASS	AC=1;AF=0.5;AN=2;DP=937;MQ=60;set=variant2-variant7-variant13-variant15-variant20-variant32-variant34-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,57:127:99:1577,0,1864:47,23,39,18
chr2	69173570	.	C	T	818.32	PASS	AC=1;AF=0.536;AN=2;DP=1093;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant13-variant15-variant16-variant20-variant22-variant29-variant32-variant34-variant35-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1035,0,1124:13,29,15,26
chr2	69180161	.	T	A	1054	PASS	AC=1;AF=0.821;AN=2;DP=1270;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:507,0,737:5,18,4,14
chr2	69201501	.	G	A	332.98	PASS	AC=2;AF=0.744;AN=2;DP=1199;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1165,93,0:0,0,26,5
chr2	69204629	.	T	C	257.5	PASS	AC=2;AF=0.55;AN=2;DP=508;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant10-variant13-variant15-variant20-variant32-variant34-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,63:64:99:1866,146,0:1,0,37,26
chr2	69204671	.	A	T	496.37	PASS	AC=2;AF=0.536;AN=2;DP=1019;MQ=60;set=variant2-variant3-variant7-variant10-variant13-variant15-variant19-variant20-variant24-variant32-variant34-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,76:77:99:2260,184,0:1,0,40,36
chr2	69205023	.	TAC	T	325.59	PASS	AC=2;AF=0.545;AN=2;DP=109;MQ=60;set=variant2-variant3-variant7-variant13-variant15-variant19-variant20-variant24-variant32-variant34-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:531,36,0:0,0,0,12
chr2	69205942	.	C	T	971.01	PASS	AC=2;AF=0.536;AN=2;DP=1169;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant10-variant13-variant15-variant19-variant20-variant24-variant32-variant34-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3089,297,0:0,0,63,36
chr2	69240259	.	AACCCC	A,AC	155.81	PASS	AC=1,0;AF=0.357,0.143;AN=2;DP=78;MQ=60;set=variant2-variant7-variant15-variant18-variant24-variant32-variant44	GT:DP:GQ:SB	0/1:9:96:1,3,2,3
chr2	69297622	.	C	T	1848.69	PASS	AC=2;AF=0.886;AN=2;DP=2765;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2267,222,0:0,0,40,34
chr2	69298817	.	T	C	1158.56	PASS	AC=1;AF=0.638;AN=2;DP=2369;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,57:95:99:1310,0,1025:20,18,32,25
chr2	69300087	.	G	C	550.44	PASS	AC=1;AF=0.5;AN=2;DP=509;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant12-variant13-variant15-variant20-variant22-variant32-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:900,0,2479:14,8,15,8
chr2	69300088	.	GGAC	G	538.39	PASS	AC=1;AF=0.5;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant12-variant13-variant15-variant20-variant22-variant32-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:992,0,2549:14,9,15,8
chr2	69300093	.	G	A	547.43	PASS	AC=1;AF=0.5;AN=2;DP=542;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant12-variant13-variant15-variant20-variant22-variant32-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:992,0,2548:14,10,18,8
chr2	69300243	.	G	A	671.16	PASS	AC=1;AF=0.5;AN=2;DP=956;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant12-variant13-variant15-variant20-variant22-variant32-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,44:58:99:1148,0,243:5,9,19,25
chr2	69304719	.	T	C	839.38	PASS	AC=1;AF=0.5;AN=2;DP=1050;MQ=60;set=variant2-variant3-variant7-variant9-variant12-variant13-variant15-variant20-variant22-variant32-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:774,0,1062:14,26,11,21
chr2	69304779	.	C	T	257.31	PASS	AC=1;AF=0.5;AN=2;DP=425;MQ=60;set=variant2-variant3-variant7-variant9-variant12-variant13-variant15-variant20-variant22-variant32-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:339,0,588:6,15,3,10
chr2	69317925	.	G	A	6041.88	PASS	AC=2;AF=0.864;AN=2;DP=7209;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6206,615,0:0,0,92,113
chr2	69318129	.	T	G	1002.88	PASS	AC=2;AF=0.909;AN=2;DP=905;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:803,66,0:0,0,5,17
chr2	69330284	.	G	A	251.97	PASS	AC=2;AF=0.75;AN=2;DP=523;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:486,36,0:0,0,3,9
chr2	69350383	.	T	C	77.66	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.077;QD=5.97;ReadPosRankSum=1.774;SOR=0.804;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:106,0,288:1,8,0,4
chr2	69351621	.	T	A	427.8	PASS	AC=1;AF=0.553;AN=2;DP=410;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant31-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:493,0,431:12,0,14,2
chr2	69362161	.	C	T	1849.65	PASS	AC=1;AF=0.567;AN=2;DP=2772;MQ=60;set=variant4-variant7-variant9-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant29-variant30-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:135,87:222:99:1874,0,3296:76,59,52,35
chr2	69362262	.	C	G	2084.76	PASS	AC=1;AF=0.567;AN=2;DP=3609;MQ=60;set=variant4-variant7-variant9-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant29-variant30-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:163,156:319:99:3305,0,3703:75,88,78,78
chr2	69362407	.	C	A	541.5	PASS	AC=1;AF=0.567;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant9-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant29-variant30-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:453,0,452:0,12,1,12
chr2	69398263	.	G	A	959.91	PASS	AC=1;AF=0.677;AN=2;DP=1745;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:691,0,799:19,9,15,13
chr2	69409029	.	C	A	3545.06	PASS	AC=2;AF=0.7;AN=2;DP=4146;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3716,338,0:0,0,42,71
chr2	69420591	.	T	TCTCA,TCACA,TCTCACA,TCACACA	614.72	PASS	AC=0,1,1,0;AF=0.5,0.1,0.014,0.014;AN=2;DP=1592;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	2/3:47:99:1,1,15,30
chr2	69420596	.	T	C	110.04	PASS	AC=2;AF=0.706;AN=2;DP=1346;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant-variant39	GT:AD:DP:GQ:PL:SB	1/1:2,44:46:97:1872,97,0:1,1,13,31
chr2	69626342	.	CA	C	64.08	PASS	AC=1;AF=0.5;AN=2;DP=1146;set=filterInvariant-variant2-variant3-variant4-variant6-variant7-filterInvariant8-filterInvariant9-variant11-filterInvariant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant34-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,10:40:99:126,0,493:21,9,8,2
chr2	69688631	.	CA	CAA,C	1682.52	PASS	AC=0,1;AF=0.128,0.372;AN=2;DP=15010;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:365:99:138,131,52,44
chr2	69688727	.	AT	A,ATT	630.49	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=11383;set=variant-variant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:222:99:71,105,18,28
chr2	69693006	.	C	T	4386.24	PASS	AC=1;AF=0.625;AN=2;DP=4971;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant32-variant34-variant35-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,107:197:99:2649,0,2251:41,49,56,51
chr2	69709488	.	CA	C	57.57	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=134;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:36,9:45:87:87,0,789:27,9,6,3
chr2	69741609	.	C	T	1199.06	PASS	AC=1;AF=0.652;AN=2;DP=2947;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,69:119:99:1811,0,1145:29,21,36,33
chr2	69741753	.	CTGT	C	1452.29	PASS	AC=1;AF=0.652;AN=2;DP=3067;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,52:94:99:1938,0,1579:18,24,23,29
chr2	69741854	.	T	G	2356.42	PASS	AC=2;AF=1;AN=2;DP=4093;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.643;ReadPosRankSum=0.711;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2892,279,0:0,0,43,50
chr2	69747817	.	G	C	1028.19	PASS	AC=1;AF=0.618;AN=2;DP=1800;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:585,0,872:22,10,16,6
chr2	69759415	.	G	A	394.46	PASS	AC=1;AF=0.618;AN=2;DP=1070;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:447,0,250:4,8,9,11
chr2	69771484	.	C	T	1956.43	PASS	AC=1;AF=0.625;AN=2;DP=3896;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,75:139:99:1962,0,1639:43,21,47,28
chr2	69784255	.	C	T	519.1	PASS	AC=1;AF=0.593;AN=2;DP=621;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:577,0,452:2,12,3,14
chr2	69784278	.	T	C	425.29	PASS	AC=1;AF=0.632;AN=2;DP=535;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:351,0,176:0,5,0,9
chr2	70014986	.	T	C	468.99	PASS	AC=1;AF=0.536;AN=2;DP=453;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:362,0,780:18,8,11,3
chr2	70031797	.	C	G	305.14	PASS	AC=1;AF=0.633;AN=2;DP=1389;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:721,0,747:8,18,5,17
chr2	70033584	.	C	T	1905.61	PASS	AC=1;AF=0.536;AN=2;DP=2433;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,111:216:99:2699,0,2589:42,63,50,61
chr2	70033649	.	G	A	1045.93	PASS	AC=1;AF=0.533;AN=2;DP=1239;set=variant-variant4-variant5-variant10-variant13-variant15-variant16-variant20-variant28-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,47:91:99:1280,0,1275:13,31,11,36
chr2	70039677	.	A	C	493.71	PASS	AC=1;AF=0.633;AN=2;DP=1183;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:218,0,476:13,9,6,6
chr2	70053668	.	A	G	46.72	PASS	AC=2;AF=0.696;AN=2;DP=141;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant22-variant24-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:166,15,0:0,0,1,4
chr2	70057448	.	T	G	742.65	PASS	AC=1;AF=0.629;AN=2;DP=1697;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1096,0,766:11,21,17,26
chr2	70064927	.	C	A	568.94	PASS	AC=1;AF=0.536;AN=2;DP=1012;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,58:98:99:1412,0,956:13,27,23,35
chr2	70066571	.	C	CTT	252.87	PASS	AC=1;AF=0.536;AN=2;DP=479;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:570,0,983:22,8,13,7
chr2	70068057	.	G	A	523.43	PASS	AC=1;AF=0.536;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:393,0,590:15,5,11,2
chr2	70068258	.	CT	C	426.7	PASS	AC=1;AF=0.633;AN=2;DP=824;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:444,0,124:2,4,4,12
chr2	70076954	.	A	T	506.19	PASS	AC=1;AF=0.645;AN=2;DP=808;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:245,0,417:6,11,3,7
chr2	70098808	.	A	G	889.52	PASS	AC=1;AF=0.633;AN=2;DP=1175;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:886,0,671:17,10,21,8
chr2	70106832	.	T	C	2256.79	PASS	AC=1;AF=0.629;AN=2;DP=4928;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,74:192:99:1586,0,2936:58,60,38,36
chr2	70107409	.	A	G	2707.23	PASS	AC=1;AF=0.536;AN=2;DP=2738;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:147,119:266:99:2830,0,3543:65,82,55,64
chr2	70107979	.	CAAA	CA,CAA,C,CAAAA	439.63	PASS	AC=1,0,0,0;AF=0.274,0.145,0.081,0.048;AN=2;DP=1210;set=variant-variant2-variant4-variant6-variant7-variant8-filterInvariant9-variant11-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:37:99:7,6,20,4
chr2	70108256	.	T	A	888.56	PASS	AC=1;AF=0.629;AN=2;DP=1889;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,33:73:99:919,0,1179:21,19,17,16
chr2	70124269	.	G	GT	599.23	PASS	AC=1;AF=0.613;AN=2;DP=1463;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:705,0,467:17,5,25,6
chr2	70124316	.	T	A	1316.12	PASS	AC=1;AF=0.597;AN=2;DP=2698;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,54:103:99:1211,0,1197:31,18,29,25
chr2	70131584	.	G	A	486.41	PASS	AC=1;AF=0.538;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,16:56:99:453,0,1406:4,36,1,15
chr2	70162534	.	T	G	1263.38	PASS	AC=1;AF=0.6;AN=2;DP=2365;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,43:96:99:1129,0,1352:35,18,25,18
chr2	70164034	.	T	C	1222.1	PASS	AC=1;AF=0.617;AN=2;DP=3227;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,55:123:99:1357,0,1714:40,28,32,23
chr2	70164580	.	C	CAGGG	76.58	PASS	AC=1;AF=0.621;AN=2;DP=478;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,14:18:99:540,0,198:1,3,3,11
chr2	70165966	.	G	A	186.96	PASS	AC=1;AF=0.538;AN=2;DP=556;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:684,0,600:13,12,14,14
chr2	70167197	.	C	T	635.38	PASS	AC=1;AF=0.6;AN=2;DP=1307;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:707,0,796:19,5,16,8
chr2	70167279	.	AT	A	893.23	PASS	AC=1;AF=0.5;AN=2;DP=4870;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,66:115:99:814,0,665:30,19,44,22
chr2	70168995	.	T	C	2353.43	PASS	AC=1;AF=0.5;AN=2;DP=2929;set=variant-variant4-variant5-variant13-variant15-variant16-variant20-variant28-variant33-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:124,106:230:99:2199,0,3266:72,52,57,49
chr2	70189331	.	GACACACACACACAC	GACACACACAC,GACACACACACAC,GACACAC,GACACACAC,G	299.81	PASS	AC=0,2,0,0,0;AF=0.593,0.267,0.035,0.058,0.012;AN=2;DP=726;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:13:39:0,0,4,9
chr2	70351316	.	C	T	798.73	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=6.205;FractionInformativeReads=1;MQ=60;MQRankSum=-0.243;QD=12.29;ReadPosRankSum=-0.991;SOR=0.198;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:827,0,1004:27,5,23,10
chr2	70436551	.	C	T	1817.54	PASS	AC=1;AF=0.55;AN=2;DP=1252;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,64:145:99:1679,0,2101:54,27,47,17
chr2	70436818	.	C	T	4496.21	PASS	AC=1;AF=0.55;AN=2;DP=3878;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:238,204:442:99:5528,0,6199:112,126,95,109
chr2	70437241	.	TA	TAA,T	2388.29	PASS	AC=0,1;AF=0.143,0.393;AN=2;DP=2587;MQ=60;set=variant4-variant8-variant11-variant13-variant15-variant18-variant19-variant21-variant26-variant28-variant31-variant33-variant38-variant44	GT:DP:GQ:SB	0/2:200:99:45,53,47,55
chr2	70438552	.	G	GT	1186.92	PASS	AC=1;AF=0.55;AN=2;DP=1265;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,62:122:99:1333,0,1317:33,27,29,33
chr2	70439404	.	C	T	2832.9	PASS	AC=1;AF=0.55;AN=2;DP=2609;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,146:308:99:3446,0,4255:88,74,82,64
chr2	70455907	.	A	G	153.72	PASS	AC=1;AF=0.64;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:272,0,122:4,1,6,3
chr2	70457784	.	CA	CAAA,CAA,CAAAA,C	193.21	PASS	AC=0,1,0,0;AF=0.219,0.344,0.063,0.031;AN=2;DP=164;MQ=60;set=variant3-variant8-variant11-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant28-variant29-variant33-variant35-variant38-variant44	GT:DP:GQ:SB	0/2:15:99:7,0,6,2
chr2	70475827	.	T	G	392.46	PASS	AC=1;AF=0.55;AN=2;DP=435;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:708,0,826:11,19,12,15
chr2	70475933	.	T	G	305.87	PASS	AC=2;AF=0.782;AN=2;DP=599;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:558,54,0:0,0,7,11
chr2	70485320	.	C	T	1966.29	PASS	AC=1;AF=0.55;AN=2;DP=1566;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,89:172:99:2031,0,1937:41,42,44,45
chr2	70486407	.	T	C	270.63	PASS	AC=1;AF=0.556;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:156,0,392:11,2,5,2
chr2	70486475	.	G	GT	595.74	PASS	AC=1;AF=0.55;AN=2;DP=486;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,18:55:99:382,0,965:26,11,10,8
chr2	70488470	.	C	T	982.97	PASS	AC=1;AF=0.6;AN=2;DP=700;MQ=60;set=variant-variant3-variant6-variant9-variant14-variant15-variant22-variant30-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:34,35:69:99:933,0,904:13,21,11,24
chr2	70502811	.	T	TTCTG	703.89	PASS	AC=1;AF=0.55;AN=2;DP=725;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:1355,0,2222:10,28,10,25
chr2	70504926	.	A	G	543.45	PASS	AC=1;AF=0.716;AN=2;DP=1109;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:318,0,380:4,8,8,3
chr2	70504972	.	G	C	622.14	PASS	AC=2;AF=0.786;AN=2;DP=1568;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1240,108,0:0,0,25,11
chr2	70505908	.	G	A	1383.9	PASS	AC=1;AF=0.55;AN=2;DP=1332;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,57:143:99:1258,0,2137:44,42,32,25
chr2	70506331	.	ACTT	A	5798.08	PASS	AC=1;AF=0.716;AN=2;DP=10810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:172,184:356:99:7192,0,7851:100,72,103,81
chr2	70508041	.	C	CA	4388.05	PASS	AC=1;AF=0.55;AN=2;DP=4042;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:196,224:420:99:5565,0,4725:88,108,94,130
chr2	70508379	.	G	A	1142.04	PASS	AC=2;AF=0.786;AN=2;DP=2233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2392,172,0:0,0,1,56
chr2	70520498	.	A	G	1968.72	PASS	AC=1;AF=0.55;AN=2;DP=1550;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,103:200:99:2656,0,2446:51,46,53,50
chr2	70520846	.	C	T	1385.27	PASS	AC=1;AF=0.55;AN=2;DP=1084;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,75:143:99:2046,0,1994:32,36,22,53
chr2	70520875	.	C	T	1352.72	PASS	AC=1;AF=0.55;AN=2;DP=1096;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,70:137:99:1853,0,1789:32,35,24,46
chr2	70523141	.	G	A	1622.96	PASS	AC=1;AF=0.55;AN=2;DP=1272;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant19-variant21-variant26-variant28-variant31-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,64:157:99:1521,0,2283:53,40,38,26
chr2	70523321	.	G	C	94.42	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;set=variant15-filterInvariant25	GT:AD:DP:GQ:PL:SB	0/1:29,5:34:99:123,0,1729:3,26,3,2
chr2	70523322	.	G	A	94.42	PASS	AC=1;AF=0.5;AN=2;DP=59;FractionInformativeReads=1;set=variant15-filterInvariant25	GT:AD:DP:GQ:PL:SB	0/1:29,5:34:99:123,0,1729:3,26,3,2
chr2	70524427	.	T	C	148.32	PASS	AC=1;AF=0.5;AN=2;DP=1380;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant29-filterInvariant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:953,0,1232:24,7,18,6
chr2	70524433	.	T	G	181.26	PASS	AC=1;AF=0.5;AN=2;DP=1437;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:1115,0,1340:25,7,19,6
chr2	70524437	.	A	G	184.27	PASS	AC=1;AF=0.5;AN=2;DP=1525;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:1154,0,1379:27,7,22,6
chr2	70524444	.	C	G	178.25	PASS	AC=1;AF=0.5;AN=2;DP=1671;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-filterInvariant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:1436,0,1526:27,8,25,8
chr2	70524451	.	C	T	154.21	PASS	AC=1;AF=0.5;AN=2;DP=1911;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant29-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1448,0,1927:34,13,29,9
chr2	70524452	.	A	G	115.23	PASS	AC=1;AF=0.5;AN=2;DP=1935;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant29-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,38:87:99:1470,0,1924:36,13,29,9
chr2	70524477	.	G	C	370	PASS	AC=1;AF=0.5;AN=2;DP=1657;set=variant2-filterInvariant3-variant9-variant14-variant15-variant18-variant19-variant20-variant22-filterInvariant23-variant25-variant31-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:108,26:134:99:369,0,4202:72,36,16,10
chr2	70524478	.	G	A	370	PASS	AC=1;AF=0.5;AN=2;DP=2695;set=variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant29-variant31-variant33-variant34-variant35-variant38-variant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,48:134:99:1475,0,2417:56,30,32,16
chr2	70524508	.	A	ACAGC	405.64	PASS	AC=1;AF=0.5;AN=2;DP=3622;set=variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-filterInvariant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-variant29-filterInvariant31-variant33-variant34-variant35-variant38-filterInvariant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:135,49:184:99:1751,0,5596:79,56,34,15
chr2	70524511	.	ACTGT	A	384.57	PASS	AC=1;AF=0.5;AN=2;DP=3857;FractionInformativeReads=1;set=variant2-variant3-variant5-variant8-filterInvariant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant29-filterInvariant31-variant33-variant34-variant35-variant38-filterInvariant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:139,51:190:99:1723,0,5683:81,58,36,15
chr2	70524576	.	C	G	561.01	PASS	AC=1;AF=0.5;AN=2;DP=1778;set=variant3-variant5-variant14-filterInvariant15-filterInvariant20-filterInvariant23-filterInvariant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:207,46:253:99:451,0,5350:106,101,33,13
chr2	70528601	.	T	C	1661.24	PASS	AC=1;AF=0.55;AN=2;DP=1466;MQ=60;set=variant8-variant11-variant15-variant19-variant26-variant28-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,89:182:99:2141,0,2224:53,40,48,41
chr2	70529242	.	T	C	350.88	PASS	AC=1;AF=0.611;AN=2;DP=980;MQ=60;set=variant-variant3-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:223,0,381:9,8,6,7
chr2	70674582	.	A	T	1100.49	PASS	AC=1;AF=0.571;AN=2;DP=1137;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant12-variant14-variant15-variant17-variant18-variant25-variant29-variant30-variant32-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,53:125:99:1425,0,1837:34,38,23,30
chr2	70676098	.	G	A	3189.7	PASS	AC=1;AF=0.559;AN=2;DP=1406;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,52:108:99:1197,0,1549:32,24,26,26
chr2	70676318	.	T	TA	3060.63	PASS	AC=1;AF=0.556;AN=2;DP=1222;MQ=60;set=variant3-variant5-variant6-variant7-variant10-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,29:86:99:569,0,2307:27,30,15,14
chr2	70676328	.	TAAAG	T	723.04	PASS	AC=1;AF=0.571;AN=2;DP=978;MQ=60;set=variant-variant2-variant8-variant12-variant14-variant15-variant17-variant18-variant25-variant29-variant30-variant32-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,57:90:99:1361,0,1182:18,15,27,30
chr2	70676769	.	GA	G	10663.5	PASS	AC=1;AF=0.559;AN=2;DP=3752;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,130:272:99:3083,0,3325:90,52,88,42
chr2	70677463	.	G	A	4705.27	PASS	AC=1;AF=0.559;AN=2;DP=1950;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,62:123:99:1666,0,2303:28,33,24,38
chr2	70677468	.	C	T	1795.11	PASS	AC=1;AF=0.571;AN=2;DP=1412;MQ=60;set=variant-variant2-variant8-variant12-variant14-variant15-variant17-variant18-variant25-variant29-variant30-variant32-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,60:122:99:1501,0,2421:25,37,28,32
chr2	70677994	.	G	A	6005.18	PASS	AC=1;AF=0.559;AN=2;DP=2412;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,88:177:99:2041,0,2238:46,43,49,39
chr2	70678173	.	C	A	1801.13	PASS	AC=1;AF=0.583;AN=2;DP=668;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:807,0,1496:7,18,4,17
chr2	70678176	.	G	A	1765.47	PASS	AC=1;AF=0.559;AN=2;DP=590;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:810,0,1465:6,17,4,17
chr2	70678265	.	C	T	72.4	PASS	AC=1;AF=0.7;AN=2;DP=36;FS=0;MQ=60;set=variant15-variant19-variant23-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:101,0,166:1,4,2,3
chr2	70679067	.	G	A	3940.34	PASS	AC=1;AF=0.559;AN=2;DP=1579;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1644,0,1648:18,44,23,43
chr2	70680211	.	CT	C	2826.76	PASS	AC=1;AF=0.559;AN=2;DP=1275;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,43:81:99:1490,0,1288:25,13,31,12
chr2	70683753	.	T	C	682.07	PASS	AC=1;AF=0.579;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant16-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:333,0,215:4,6,3,9
chr2	70692557	.	C	T	675.03	PASS	AC=1;AF=0.559;AN=2;DP=304;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:286,0,483:13,5,8,4
chr2	70888203	.	C	A	426	PASS	AC=1;AF=0.533;AN=2;DP=658;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,43:68:99:1082,0,638:12,13,23,20
chr2	70900403	.	G	A	1793.18	PASS	AC=1;AF=0.536;AN=2;DP=1654;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,71:136:99:1703,0,1692:32,33,29,42
chr2	70901785	.	A	G	1374.87	PASS	AC=1;AF=0.536;AN=2;DP=919;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,24:74:99:854,0,2172:36,14,15,9
chr2	70901788	.	GGT	G	1393.61	PASS	AC=1;AF=0.536;AN=2;DP=972;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,24:76:99:848,0,2240:36,16,15,9
chr2	70902120	.	T	A	247.44	PASS	AC=1;AF=0.536;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:305,0,650:9,10,6,5
chr2	70902502	.	C	T	818.08	PASS	AC=1;AF=0.5;AN=2;DP=670;MQ=60;set=variant3-variant5-variant9-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:1117,0,1015:16,23,16,23
chr2	70902672	.	C	A	1342.82	PASS	AC=1;AF=0.5;AN=2;DP=671;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,24:69:99:560,0,1042:19,26,8,16
chr2	70902823	.	C	T	566.58	PASS	AC=1;AF=0.5;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:293,0,347:7,5,7,5
chr2	70903664	.	G	A	1679.54	PASS	AC=1;AF=0.5;AN=2;DP=1049;MQ=60;set=variant3-variant5-variant9-variant11-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,58:114:99:1411,0,1344:24,32,27,31
chr2	70905099	.	T	G	404.57	PASS	AC=2;AF=0.817;AN=2;DP=1569;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1623,134,0:0,0,7,38
chr2	70917812	.	C	T	2476.49	PASS	AC=2;AF=0.854;AN=2;DP=4391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:3670,427,0:0,0,91,52
chr2	70931400	.	A	C	90.68	PASS	AC=1;AF=0.5;AN=2;DP=440;set=variant2-filterInvariant4-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant25-variant27-filterInvariant30-variant31-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:211,0,792:2,13,7,0
chr2	70931405	.	A	C	77.7	PASS	AC=1;AF=0.5;AN=2;DP=410;set=variant2-variant4-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant31-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:198,0,916:2,13,6,0
chr2	70931409	.	T	C	77.7	PASS	AC=1;AF=0.5;AN=2;DP=432;set=variant2-variant4-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant31-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,6:23:99:195,0,982:3,14,6,0
chr2	70931414	.	T	C	52.58	PASS	AC=1;AF=0.5;AN=2;DP=481;set=variant2-variant4-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant31-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,5:25:99:189,0,1066:6,14,5,0
chr2	70931417	.	A	C	49.57	PASS	AC=1;AF=0.5;AN=2;DP=494;set=variant2-variant4-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant31-variant33-variant35-variant36-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,5:25:99:150,0,1069:6,14,5,0
chr2	70933659	.	T	A	991.7	PASS	AC=1;AF=0.63;AN=2;DP=1888;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant12-variant14-variant15-variant16-variant20-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,39:72:99:1041,0,924:7,26,12,27
chr2	70940481	.	A	G	210.86	PASS	AC=1;AF=0.6;AN=2;DP=155;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant20-variant21-variant26-variant27-variant36-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,166:1,4,0,2
chr2	70995129	.	G	A	1051.17	PASS	AC=1;AF=0.645;AN=2;DP=5451;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:110,76:186:99:1662,0,2752:51,59,40,36
chr2	70995217	.	A	T	636.71	PASS	AC=1;AF=0.645;AN=2;DP=4006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,52:123:99:1234,0,1845:29,42,19,33
chr2	71012604	.	G	A	869.59	PASS	AC=1;AF=0.695;AN=2;DP=3743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,59:131:99:1573,0,1799:36,36,36,23
chr2	71012734	.	C	G	714.46	PASS	AC=1;AF=0.684;AN=2;DP=2673;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,47:85:99:1291,0,1073:11,27,15,32
chr2	71036189	.	CA	C	2181.24	PASS	AC=1;AF=0.521;AN=2;DP=3382;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant19-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,80:160:99:2733,0,2736:45,35,46,34
chr2	71043461	.	C	T	1330.89	PASS	AC=1;AF=0.56;AN=2;DP=2590;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant23-variant25-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,55:114:99:1519,0,1691:27,32,30,25
chr2	71044211	.	C	T	1054.13	PASS	AC=1;AF=0.56;AN=2;DP=2236;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,60:111:99:1565,0,1131:20,31,21,39
chr2	71057892	.	A	G	1367.84	PASS	AC=2;AF=0.989;AN=2;DP=2317;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,74:75:99:2299,214,0:1,0,36,38
chr2	71058184	.	C	T	867.39	PASS	AC=1;AF=0.595;AN=2;DP=1425;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant21-variant22-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1040,0,986:23,17,21,17
chr2	71058835	.	A	G	1083.72	PASS	AC=1;AF=0.6;AN=2;DP=3618;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,50:126:99:1278,0,1941:47,29,32,18
chr2	71060936	.	G	C	2810.22	PASS	AC=1;AF=0.591;AN=2;DP=4398;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant17-variant21-variant22-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:117,111:228:99:2654,0,2932:52,65,56,55
chr2	71062648	.	G	A	1192.05	PASS	AC=2;AF=0.558;AN=2;DP=2381;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant32-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3859,350,0:0,0,78,39
chr2	71062833	.	G	GC	4573.48	PASS	AC=2;AF=1;AN=2;DP=6997;FS=0;MQ=60;MQRankSum=1.234;ReadPosRankSum=0.693;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:7156,578,0:0,0,86,106
chr2	71148045	.	C	T	782.27	PASS	AC=1;AF=0.803;AN=2;DP=936;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:467,0,510:14,3,12,3
chr2	71160421	.	G	C	885.97	PASS	AC=1;AF=0.55;AN=2;DP=1644;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1054,0,1316:21,30,18,26
chr2	71162996	.	A	G	1623.48	PASS	AC=1;AF=0.743;AN=2;DP=1994;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:952,0,908:23,11,21,16
chr2	71163173	.	C	T	1426.32	PASS	AC=1;AF=0.536;AN=2;DP=2082;MQ=60;set=variant8-variant9-variant10-variant12-variant15-variant19-variant21-variant24-variant25-variant27-variant31-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,98:183:99:2180,0,1970:34,51,45,53
chr2	71175645	.	G	A	787.35	PASS	AC=2;AF=0.595;AN=2;DP=1843;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant21-variant24-variant27-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,69:70:99:2102,200,0:1,0,23,46
chr2	71185391	.	A	C	5086.3	PASS	AC=2;AF=0.707;AN=2;DP=4808;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5177,479,0:0,0,91,69
chr2	71186382	.	G	A	2558.15	PASS	AC=2;AF=0.7;AN=2;DP=2986;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3519,329,0:0,0,42,68
chr2	71190384	.	C	T	7185.51	PASS	AC=2;AF=0.707;AN=2;DP=7285;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:7450,743,0:0,0,113,136
chr2	71190545	.	G	A	1376.75	PASS	AC=2;AF=0.707;AN=2;DP=1292;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2062,156,0:0,0,14,38
chr2	71191777	.	C	T	395.6	PASS	AC=2;AF=0.712;AN=2;DP=824;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1292,96,0:0,0,11,21
chr2	71297695	.	T	C	2521.26	PASS	AC=2;AF=0.553;AN=2;DP=4153;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant29-variant37-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,244:246:99:7329,688,0:1,1,123,121
chr2	71297982	.	C	T	622.91	PASS	AC=2;AF=0.65;AN=2;DP=4987;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:5843,576,0:0,0,89,104
chr2	71299214	.	G	T	281.38	PASS	AC=2;AF=0.556;AN=2;DP=285;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant29-variant37-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:295,24,0:0,0,2,6
chr2	71300454	.	A	C	35.46	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;set=variant-variant15-variant25-variant26-variant27-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:126,0,313:1,3,5,0
chr2	71300461	.	T	C	77.17	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;set=variant15-variant26-variant33-variant35	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:105,0,630:6,5,4,0
chr2	71304381	.	C	T	863.78	PASS	AC=2;AF=0.6;AN=2;DP=380;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant10-variant15-variant17-variant21-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1483,138,0:0,0,33,13
chr2	71305456	.	C	T	2898.53	PASS	AC=2;AF=0.826;AN=2;DP=6168;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4754,458,0:0,0,68,85
chr2	71357417	.	C	A	1651.76	PASS	AC=2;AF=0.769;AN=2;DP=7812;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:7052,735,0:0,0,106,143
chr2	71357634	.	C	T	2291.78	PASS	AC=2;AF=0.769;AN=2;DP=6485;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:6463,587,0:0,0,113,83
chr2	71357710	.	G	C	3427.17	PASS	AC=2;AF=0.614;AN=2;DP=5238;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,274:274:99:8577,821,0:0,0,140,134
chr2	71360144	.	A	C	1042.87	PASS	AC=2;AF=0.614;AN=2;DP=1437;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2333,234,0:0,0,48,30
chr2	71360625	.	G	T	413.38	PASS	AC=2;AF=0.614;AN=2;DP=1166;FractionInformativeReads=1;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1938,179,0:0,0,27,33
chr2	71360723	.	A	G	805.17	PASS	AC=2;AF=0.875;AN=2;DP=1592;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1969,135,0:0,0,18,27
chr2	71360735	.	T	TTCC	778.96	PASS	AC=2;AF=0.875;AN=2;DP=1471;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1879,126,0:0,0,16,26
chr2	71360973	.	A	C	81.17	PASS	AC=2;AF=0.632;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant27-variant28-variant33-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:367,33,0:0,0,6,5
chr2	71361332	.	T	G	1000.61	PASS	AC=2;AF=0.614;AN=2;DP=2865;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5983,540,0:0,0,54,126
chr2	71365509	.	C	T	49.73	PASS	AC=2;AF=0.786;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant28-variant35-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:171,12,0:0,0,4,0
chr2	71365676	.	G	A	907.14	PASS	AC=2;AF=0.614;AN=2;DP=1470;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2283,201,0:0,0,50,17
chr2	71375065	.	A	C	400.48	PASS	AC=2;AF=0.614;AN=2;DP=580;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1157,105,0:0,0,25,10
chr2	71376999	.	G	A	1211.91	PASS	AC=2;AF=0.614;AN=2;DP=2158;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant21-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3345,332,0:0,0,54,57
chr2	71415479	.	T	C	1921.46	PASS	AC=2;AF=0.898;AN=2;DP=3260;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3380,330,0:0,0,62,48
chr2	71417065	.	G	T	3060.16	PASS	AC=2;AF=0.898;AN=2;DP=4086;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2724,293,0:0,0,47,51
chr2	71429725	.	T	C	1054.15	PASS	AC=2;AF=0.611;AN=2;DP=938;set=variant7-variant10-variant15-variant17-variant24-variant27-variant33-variant34-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4005,368,0:0,0,35,88
chr2	71429750	.	A	T	699.74	PASS	AC=2;AF=0.611;AN=2;DP=655;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant15-variant17-variant24-variant27-variant33-variant34-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3096,261,0:0,0,20,67
chr2	71558782	.	G	GC	382.22	PASS	AC=2;AF=1;AN=2;DP=993;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1042,96,0:0,0,30,2
chr2	71558924	.	G	T	4055.11	PASS	AC=2;AF=0.92;AN=2;DP=8117;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,276:276:99:7621,818,0:0,0,149,127
chr2	71615571	.	C	T	706.36	PASS	AC=2;AF=0.898;AN=2;DP=1366;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1250,96,0:0,0,23,9
chr2	71620818	.	C	T	2340.56	PASS	AC=2;AF=0.898;AN=2;DP=4238;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3017,305,0:0,0,49,53
chr2	71626679	.	CT	C	2104.66	PASS	AC=2;AF=0.667;AN=2;DP=1886;MQ=60;set=variant5-variant7-variant10-variant11-variant13-variant15-variant17-variant18-variant23-variant24-variant27-variant32-variant33-variant39-variant40	GT:AD:DP:GQ:PL:SB	1/1:3,140:143:99:4730,330,0:2,1,78,62
chr2	71632976	.	AGTGCATATTAAGTGGTCTAATAG	A	307.96	PASS	AC=2;AF=0.6;AN=2;DP=164;MQ=60;set=variant5-variant7-variant10-variant15-variant17-variant18-variant24-variant27-variant33-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:58:817,58,0:0,0,8,11
chr2	71634588	.	G	A	5199.39	PASS	AC=2;AF=0.898;AN=2;DP=6338;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5707,551,0:0,0,72,113
chr2	71635931	.	G	T	2041.91	PASS	AC=2;AF=0.898;AN=2;DP=3164;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2714,236,0:0,0,23,56
chr2	71645628	.	G	GT,GTT,GTTT	296.7	PASS	AC=0,2,0;AF=0.184,0.447,0.053;AN=2;DP=418;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant24-variant27-variant29-variant32-variant33-variant37-variant38-variant40	GT:DP:GQ:SB	2/2:18:57:0,0,13,5
chr2	71645854	.	TGTA	T	847.59	PASS	AC=2;AF=0.643;AN=2;DP=610;MQ=60;set=variant5-variant7-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant24-variant27-variant32-variant33-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2314,157,0:0,0,13,39
chr2	71645890	.	G	C	675.3	PASS	AC=2;AF=0.795;AN=2;DP=743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1067,78,0:0,0,2,24
chr2	71651939	.	T	A	1290.99	PASS	AC=2;AF=0.717;AN=2;DP=2609;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2661,251,0:0,0,34,50
chr2	71661855	.	C	CA	504.24	PASS	AC=2;AF=0.614;AN=2;DP=883;MQ=60;set=variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant27-variant31-variant32-variant33-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1781,162,0:0,0,34,19
chr2	71708825	.	T	TATCCATCC,TATCC,TATCCATCCATCC,TATCCATCCATCCATCC,TCC	160.48	PASS	AC=0,2,0,0,0;AF=0.038,0.564,0.064,0.013,0.013;AN=2;DP=663;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:17:54:0,0,12,5
chr2	71747235	.	A	G	1168.21	PASS	AC=2;AF=0.92;AN=2;DP=4365;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4315,414,0:0,0,85,53
chr2	71747432	.	G	T	1152.6	PASS	AC=2;AF=0.854;AN=2;DP=2682;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2911,246,0:0,0,19,63
chr2	71747851	.	T	C	62.03	PASS	AC=2;AF=0.92;AN=2;DP=1421;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1184,114,0:0,0,25,13
chr2	71747899	.	G	A	123.21	PASS	AC=2;AF=0.689;AN=2;DP=2255;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1981,199,0:0,0,39,28
chr2	71755380	.	A	G	2858.37	PASS	AC=2;AF=0.955;AN=2;DP=4289;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3669,360,0:0,0,73,48
chr2	71762232	.	C	T	881.19	PASS	AC=2;AF=0.779;AN=2;DP=4261;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,112:113:99:3463,291,0:0,1,50,62
chr2	71762310	.	A	G	1502.96	PASS	AC=2;AF=0.826;AN=2;DP=2964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,78:79:99:2708,196,0:0,1,45,33
chr2	71766487	.	G	A	2930.21	PASS	AC=2;AF=0.793;AN=2;DP=4170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4395,404,0:0,0,49,86
chr2	71776345	.	C	T	953.03	PASS	AC=2;AF=0.768;AN=2;DP=1720;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2366,160,0:0,0,33,19
chr2	71776346	.	A	G	953.03	PASS	AC=2;AF=0.943;AN=2;DP=1924;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2366,160,0:0,0,34,19
chr2	71780215	.	T	C	1265.23	PASS	AC=2;AF=0.802;AN=2;DP=6190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:4948,507,0:0,0,80,89
chr2	71780821	.	T	C	49.87	PASS	AC=2;AF=0.886;AN=2;DP=189;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:254,21,0:0,0,5,2
chr2	71795152	.	A	T	566.22	PASS	AC=1;AF=0.75;AN=2;DP=5941;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,71:176:99:1644,0,2540:59,46,39,32
chr2	71796865	.	C	G	152.99	PASS	AC=1;AF=0.756;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:331,0,228:6,2,9,1
chr2	71797712	.	G	A	2706.51	PASS	AC=1;AF=0.6;AN=2;DP=1335;MQ=60;set=variant7-variant9-variant11-variant14-variant15-variant18-variant20-variant26-variant27-variant30-variant32-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,51:110:99:1313,0,1541:39,20,34,17
chr2	71817003	.	A	G	241.46	PASS	AC=1;AF=0.789;AN=2;DP=794;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:460,0,377:3,9,4,9
chr2	71817571	.	A	T	701.66	PASS	AC=1;AF=0.571;AN=2;DP=967;MQ=60;set=variant6-variant7-variant9-variant11-variant14-variant15-variant18-variant20-variant21-variant26-variant27-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:996,0,782:2,22,9,24
chr2	71825707	.	C	T	1965.21	PASS	AC=1;AF=0.5;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:63,75:138:99:1993,0,1564:37,26,47,28
chr2	71828423	.	A	T	952.2	PASS	AC=2;AF=0.977;AN=2;DP=1125;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1214,93,0:0,0,27,4
chr2	71829821	.	G	T	3490.52	PASS	AC=2;AF=0.977;AN=2;DP=5773;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5121,521,0:0,0,92,83
chr2	71838597	.	C	A	1397.38	PASS	AC=1;AF=0.636;AN=2;DP=3491;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,62:121:99:1723,0,1582:26,33,27,35
chr2	71847943	.	C	A	1206.75	PASS	AC=1;AF=0.802;AN=2;DP=1508;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:549,0,517:6,13,9,13
chr2	71848076	.	G	A	128.18	PASS	AC=1;AF=0.69;AN=2;DP=140;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant10-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:67:67,0,121:3,3,1,2
chr2	71871039	.	A	G	2265.88	PASS	AC=1;AF=0.895;AN=2;DP=3009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:903,0,1107:27,13,19,17
chr2	71871236	.	A	G	842.3	PASS	AC=1;AF=0.895;AN=2;DP=1372;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:464,0,745:6,19,7,12
chr2	71891361	.	C	T	2311.26	PASS	AC=1;AF=0.895;AN=2;DP=3742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,56:100:99:1306,0,972:26,18,35,21
chr2	71901286	.	C	T	755.18	PASS	AC=1;AF=0.86;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:541,0,449:11,3,14,5
chr2	71906171	.	T	C	1906.82	PASS	AC=1;AF=0.919;AN=2;DP=3405;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,54:94:99:1542,0,1063:29,11,39,15
chr2	71907930	.	G	T	812.75	PASS	AC=1;AF=0.881;AN=2;DP=746;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:322,0,217:5,1,8,1
chr2	72356264	.	C	G	256.62	PASS	AC=1;AF=0.55;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant15-variant21-variant25-variant26-variant28-variant30-variant33-variant38	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:104,0,163:3,2,2,1
chr2	72692272	.	A	AAG	5283.99	PASS	AC=2;AF=0.989;AN=2;DP=5701;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:7439,500,0:0,0,91,74
chr2	72707580	.	A	G	262.34	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:291,0,472:12,3,8,2
chr2	72727124	.	G	C	548.51	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:577,0,464:6,12,9,15
chr2	72742083	.	GACAC	GAC,G,GACACAC,GACACACAC	1455.95	PASS	AC=2,0,0,0;AF=0.693,0.17,0.011,0.011;AN=2;DP=2385;set=Intersection	GT:DP:GQ:SB	1/1:54:99:0,0,38,16
chr2	73114352	.	A	C	139.16	PASS	AC=2;AF=0.769;AN=2;DP=933;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:572,60,0:0,0,13,7
chr2	73151231	.	C	T	7557.27	PASS	AC=2;AF=0.955;AN=2;DP=9336;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,258:259:99:7486,757,0:1,0,156,102
chr2	73161551	.	A	G	592.95	PASS	AC=1;AF=0.593;AN=2;DP=928;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:676,0,753:15,13,10,12
chr2	73172091	.	C	T	1140.9	PASS	AC=1;AF=0.5;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant15-variant33	GT:AD:DP:GQ:PL:SB	0/1:66,82:148:99:2066,0,1731:36,30,43,39
chr2	73195493	.	T	C	219.28	PASS	AC=1;AF=0.5;AN=2;DP=77;MQ=60;set=variant15-variant26-variant40	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:248,0,363:5,9,6,4
chr2	73280303	.	G	A	258.87	PASS	AC=1;AF=0.537;AN=2;DP=766;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:395,0,336:9,3,10,5
chr2	73339430	.	T	G	1975.91	PASS	AC=1;AF=0.849;AN=2;DP=6444;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,83:158:99:2076,0,1709:48,27,46,37
chr2	73339708	.	G	A	2255.88	PASS	AC=1;AF=0.724;AN=2;DP=10900;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,191:362:99:4710,0,4135:83,88,102,89
chr2	73429742	.	T	G	1796.87	PASS	AC=1;AF=0.5;AN=2;DP=749;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant12-variant15-variant18-variant20-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,70:130:99:1885,0,1531:35,25,32,38
chr2	73430234	.	T	C	1149.12	PASS	AC=1;AF=0.742;AN=2;DP=1325;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:482,0,598:8,16,6,12
chr2	73438442	.	GA	GAA,G	243.52	PASS	AC=1,0;AF=0.71,0.048;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:23:99:7,6,7,3
chr2	73438954	.	T	C	345.76	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant18-variant20-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:522,0,557:10,12,10,12
chr2	73439272	.	A	C	447.24	PASS	AC=1;AF=0.5;AN=2;DP=89;MQ=60;set=variant15-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:475,0,153:4,3,5,12
chr2	73441385	.	C	G	5023.99	PASS	AC=1;AF=0.5;AN=2;DP=3686;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant18-variant20-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:244,261:505:99:6458,0,5875:133,111,141,120
chr2	73441513	.	C	T	2512.6	PASS	AC=1;AF=0.5;AN=2;DP=1420;MQ=60;set=variant7-variant12-variant15-variant18-variant20-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,106:207:99:3066,0,3139:21,80,22,84
chr2	73441597	.	G	A	532.66	PASS	AC=1;AF=0.674;AN=2;DP=1348;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:1012,0,1323:11,28,12,20
chr2	73447736	.	G	A	1315.13	PASS	AC=1;AF=0.674;AN=2;DP=2839;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,71:146:99:1711,0,1783:42,33,42,29
chr2	73447775	.	A	G	1415.21	PASS	AC=1;AF=0.679;AN=2;DP=3523;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,73:144:99:1712,0,1784:36,35,39,34
chr2	73450139	.	A	T	1987.3	PASS	AC=1;AF=0.674;AN=2;DP=3237;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,90:174:99:2408,0,1921:44,40,51,39
chr2	73452127	.	AG	A	779.1	PASS	AC=1;AF=0.5;AN=2;DP=345;MQ=60;set=variant7-variant12-variant15-variant18-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:922,0,1025:8,24,8,22
chr2	73455747	.	C	T	736.9	PASS	AC=1;AF=0.652;AN=2;DP=3305;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,85:163:99:1955,0,1875:40,38,40,45
chr2	73460293	.	AGGGCC	A	1751.3	PASS	AC=1;AF=0.726;AN=2;DP=1391;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:538,0,1417:9,15,6,9
chr2	73461483	.	C	A	2153.94	PASS	AC=1;AF=0.652;AN=2;DP=4185;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:112,102:214:99:2277,0,2748:57,55,51,51
chr2	73466592	.	G	A	669.9	PASS	AC=1;AF=0.652;AN=2;DP=790;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:590,0,628:15,5,16,2
chr2	73467676	.	GAA	G	1240.01	PASS	AC=1;AF=0.667;AN=2;DP=2743;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,64:129:99:2492,0,2435:27,38,25,39
chr2	73471193	.	GT	G,GTT	130.77	PASS	AC=1,0;AF=0.457,0.043;AN=2;DP=2427;set=filterInvariant-filterInvariant2-variant3-filterInvariant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-variant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-variant33-variant34-variant36-variant39-variant40-filterInvariant41-filterInvariant42-variant44	GT:DP:GQ:SB	0/1:51:99:6,28,5,12
chr2	73471653	.	T	G	290.59	PASS	AC=1;AF=0.674;AN=2;DP=1550;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,31:71:99:787,0,1136:26,14,18,13
chr2	73472012	.	G	A	1618.86	PASS	AC=1;AF=0.742;AN=2;DP=1460;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:585,0,825:8,20,8,14
chr2	73474706	.	TA	AA,TAA,T	318.84	PASS	AC=1,1,0;AF=0.5,0.063,0.063;AN=2;DP=448;MQ=60;set=variant15-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant10-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:22:99:2,1,16,3
chr2	73477351	.	T	C	1475.46	PASS	AC=1;AF=0.674;AN=2;DP=2434;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1558,0,1277:29,21,38,24
chr2	73478461	.	A	T	906.89	PASS	AC=1;AF=0.674;AN=2;DP=2950;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,80:159:99:1790,0,1764:34,45,34,46
chr2	73478593	.	T	G	43.16	PASS	AC=1;AF=0.5;AN=2;DP=23;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:9,2:11:71:71,0,332:7,2,0,2
chr2	73478601	.	T	G	95.35	PASS	AC=1;AF=0.5;AN=2;DP=33;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:77:77,0,294:7,0,0,4
chr2	73482673	.	G	A	536.74	PASS	AC=1;AF=0.5;AN=2;DP=566;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant18-variant20-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:829,0,791:17,14,13,19
chr2	73483057	.	T	C	1224.76	PASS	AC=1;AF=0.742;AN=2;DP=1533;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:702,0,772:16,16,15,13
chr2	73483769	.	G	A	1097.15	PASS	AC=1;AF=0.682;AN=2;DP=2430;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,66:117:99:1783,0,1378:21,30,27,39
chr2	73490125	.	A	G	332.45	PASS	AC=1;AF=0.708;AN=2;DP=438;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:58:208,0,58:2,0,5,3
chr2	73490412	.	A	G	847.65	PASS	AC=1;AF=0.719;AN=2;DP=1760;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,39:76:99:949,0,867:15,22,20,19
chr2	73491514	.	C	T	3286.58	PASS	AC=1;AF=0.5;AN=2;DP=2159;MQ=60;set=variant7-variant15-variant18-variant20-variant26-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:174,175:349:99:4168,0,4301:70,104,79,96
chr2	73491683	.	G	A	1214.74	PASS	AC=1;AF=0.568;AN=2;DP=914;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant11-variant14-variant15-variant19-variant22-variant23-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:486,0,923:11,20,9,12
chr2	73497845	.	A	G	590.31	PASS	AC=1;AF=0.5;AN=2;DP=226;MQ=60;set=variant15-variant26-variant36-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:619,0,457:15,2,16,5
chr2	73613031	.	TGGAGGAGGA	TGGA,TGGAGGAGGAGGA,TGGAGGA,TGGAGGAGGAGGAGGA,T	601.68	PASS	AC=1,0,0,0,0;AF=0.318,0.42,0.045,0.034,0.011;AN=2;DP=2483;set=Intersection	GT:DP:GQ:SB	0/1:59:99:21,7,25,6
chr2	73613341	.	G	A	718.31	PASS	AC=1;AF=0.568;AN=2;DP=1427;MQ=60;set=variant-variant2-variant6-variant7-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant31-variant35-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,41:77:99:1155,0,983:9,27,10,31
chr2	73649928	.	G	A	849.68	PASS	AC=1;AF=0.565;AN=2;DP=1410;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:632,0,889:23,6,16,11
chr2	73650122	.	T	A	811.79	PASS	AC=1;AF=0.716;AN=2;DP=2295;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:1043,0,861:12,23,6,30
chr2	73651967	.	C	T	1053.98	PASS	AC=1;AF=0.563;AN=2;DP=2388;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,70:142:99:1765,0,1685:33,39,28,42
chr2	73675019	.	CT	C	150.8	PASS	AC=1;AF=0.783;AN=2;DP=258;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant20-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:182,0,119:3,2,5,2
chr2	73675227	.	T	TCTC	2725.07	PASS	AC=1;AF=0.737;AN=2;DP=5569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,75:191:99:2826,0,5742:66,50,36,39
chr2	73675669	.	T	G	1353.97	PASS	AC=2;AF=0.919;AN=2;DP=5417;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4681,423,0:0,0,72,69
chr2	73675844	.	C	T	1611.65	PASS	AC=1;AF=0.716;AN=2;DP=7457;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,111:229:99:2867,0,3200:60,58,65,46
chr2	73677548	.	A	G	5108.37	PASS	AC=1;AF=0.5;AN=2;DP=1920;set=variant6-variant15-variant16-variant22-variant37	GT:AD:DP:GQ:PL:SB	0/1:214,167:381:99:3906,0,5313:107,107,86,81
chr2	73677833	.	A	G	3888.18	PASS	AC=1;AF=0.565;AN=2;DP=7753;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,243:419:99:6077,0,4218:96,80,121,122
chr2	73677898	.	G	C	3933.08	PASS	AC=1;AF=0.563;AN=2;DP=8111;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,230:424:99:5760,0,4801:100,94,121,109
chr2	73679280	.	A	G	1640.65	PASS	AC=1;AF=0.563;AN=2;DP=3771;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,104:182:99:2866,0,2256:35,43,51,53
chr2	73679990	.	T	A	1063.82	PASS	AC=1;AF=0.563;AN=2;DP=2586;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,56:124:99:1419,0,1579:36,32,28,28
chr2	73680508	.	G	C	1400.65	PASS	AC=1;AF=0.563;AN=2;DP=2219;FractionInformativeReads=1;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,62:127:99:1519,0,1603:33,32,29,33
chr2	73717567	.	G	T	1104.89	PASS	AC=1;AF=0.563;AN=2;DP=2034;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,67:132:99:1856,0,1515:32,33,32,35
chr2	73717656	.	A	G	1131.43	PASS	AC=1;AF=0.563;AN=2;DP=2410;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,60:140:99:1605,0,1998:37,43,32,28
chr2	73746923	.	C	T	684.32	PASS	AC=1;AF=0.548;AN=2;DP=866;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant35-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:411,0,527:13,6,11,6
chr2	73761881	.	G	A	308.02	PASS	AC=1;AF=0.563;AN=2;DP=738;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:508,0,616:16,5,14,2
chr2	73762236	.	A	G	333.28	PASS	AC=1;AF=0.548;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant35-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,23:29:99:839,0,128:2,4,3,20
chr2	73828310	.	T	C	1387.08	PASS	AC=1;AF=0.724;AN=2;DP=5499;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,97:174:99:2671,0,2188:61,16,69,28
chr2	73828538	.	G	A	2577.55	PASS	AC=1;AF=0.737;AN=2;DP=8418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,119:249:99:3027,0,3556:45,85,42,77
chr2	73829372	.	C	T	1433.23	PASS	AC=1;AF=0.543;AN=2;DP=3463;set=variant2-variant6-variant7-variant10-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,75:162:99:1663,0,2055:48,39,41,34
chr2	73830581	.	GA	GAA,G	194.69	PASS	AC=1,0;AF=0.478,0.043;AN=2;DP=705;set=variant2-filterInvariant5-variant6-filterInvariant7-filterInvariant8-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant35-variant36-variant37-variant39-variant43-variant44	GT:DP:GQ:SB	0/1:15:77:3,3,2,7
chr2	73867862	.	G	C	144.18	PASS	AC=1;AF=0.523;AN=2;DP=355;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant35-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,13:16:46:488,0,46:2,1,12,1
chr2	73867897	.	A	G	270.12	PASS	AC=2;AF=0.919;AN=2;DP=1099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:896,75,0:0,0,20,5
chr2	73868328	.	A	G	2765.46	PASS	AC=1;AF=0.545;AN=2;DP=4756;set=variant2-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant35-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,121:252:99:2755,0,3393:76,55,71,50
chr2	73898118	.	C	T	396.83	PASS	AC=1;AF=0.73;AN=2;DP=1149;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,12:38:99:371,0,783:20,6,11,1
chr2	73898359	.	G	A	686.91	PASS	AC=1;AF=0.73;AN=2;DP=2040;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,36:60:99:1025,0,737:4,20,11,25
chr2	73898420	.	A	G	323.76	PASS	AC=1;AF=0.73;AN=2;DP=694;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:202,0,251:1,7,1,6
chr2	73899955	.	G	T	3007.29	PASS	AC=2;AF=0.93;AN=2;DP=13210;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,400:400:99:11900,1196,0:0,0,251,149
chr2	73900210	.	A	G	938.26	PASS	AC=2;AF=0.919;AN=2;DP=3273;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3607,282,0:0,0,12,82
chr2	73900900	.	T	C	200.61	PASS	AC=1;AF=0.568;AN=2;DP=526;set=variant2-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant35-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:385,0,685:18,2,11,3
chr2	73900918	.	CTT	CT,C	42.93	PASS	AC=1,1;AF=0.523,0.151;AN=2;DP=1727;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:50:99:1,1,32,16
chr2	73927931	.	A	G	1248.66	PASS	AC=2;AF=0.789;AN=2;DP=4756;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5664,521,0:0,0,101,73
chr2	73928098	.	C	G	1476.79	PASS	AC=1;AF=0.716;AN=2;DP=11028;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:173,168:341:99:4129,0,4512:92,81,77,91
chr2	73928366	.	G	C	2446.4	PASS	AC=1;AF=0.708;AN=2;DP=9527;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:184,152:336:99:3599,0,4402:89,95,73,79
chr2	73956940	.	CTT	CT,C	247.98	PASS	AC=1,0;AF=0.588,0.013;AN=2;DP=1286;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:39:99:10,7,16,6
chr2	73957124	.	A	G	1396.92	PASS	AC=1;AF=0.716;AN=2;DP=4382;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,75:143:99:1993,0,1617:31,37,33,42
chr2	73957227	.	T	A	460.72	PASS	AC=1;AF=0.716;AN=2;DP=1241;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:669,0,637:5,17,4,16
chr2	73959834	.	CA	CAA,C	234.42	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=55;MQ=60;set=variant15-variant19-filterInvariant33	GT:DP:GQ:SB	0/1:17:50:1,3,7,6
chr2	73959935	.	T	A	504.77	PASS	AC=1;AF=0.743;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:231,0,235:3,4,2,4
chr2	73959960	.	G	T	471.79	PASS	AC=1;AF=0.743;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:201,0,130:1,2,2,3
chr2	73964631	.	C	T	46.15	PASS	AC=1;AF=0.689;AN=2;DP=537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:240,0,148:1,4,2,6
chr2	73993436	.	CAA	CA,C	119.83	PASS	AC=1,0;AF=0.786,0.024;AN=2;DP=144;set=variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant24-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:DP:GQ:SB	0/1:6:34:2,0,4,0
chr2	73994074	.	G	A	2540.04	PASS	AC=2;AF=0.943;AN=2;DP=2506;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2591,230,0:0,0,22,55
chr2	74000701	.	C	T	113.67	PASS	AC=1;AF=0.773;AN=2;DP=286;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,109:2,1,1,1
chr2	74007136	.	T	C	492.02	PASS	AC=1;AF=0.73;AN=2;DP=3198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,56:109:99:1372,0,1294:25,28,25,31
chr2	74007345	.	A	G	591.17	PASS	AC=1;AF=0.724;AN=2;DP=1867;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:852,0,487:5,11,15,17
chr2	74035880	.	A	G	218.73	PASS	AC=2;AF=0.989;AN=2;DP=461;FS=0;MQRankSum=-1.221;ReadPosRankSum=-0.322;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:285,30,0:0,0,4,6
chr2	74056313	.	G	C	1227.49	PASS	AC=1;AF=0.5;AN=2;DP=692;MQ=60;set=variant-variant6-variant10-variant15-variant17-variant22-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:1120,0,1347:18,29,16,25
chr2	74056520	.	C	G	636.48	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant22-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:687,0,830:12,20,11,16
chr2	74056564	.	A	G	705.86	PASS	AC=1;AF=0.635;AN=2;DP=1255;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:622,0,700:12,17,12,14
chr2	74077755	.	C	G	502.47	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:37,16:53:99:484,0,1071:10,27,1,15
chr2	74086550	.	T	G	1124.14	PASS	AC=1;AF=0.5;AN=2;DP=402;MQ=60;set=variant6-variant15-variant22-variant39	GT:AD:DP:GQ:PL:SB	0/1:53,67:120:99:1787,0,1405:14,39,21,46
chr2	74087329	.	A	G	992.76	PASS	AC=1;AF=0.5;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant22-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:711,0,906:7,23,12,19
chr2	74087405	.	C	G	100.43	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.273;QD=6.28;ReadPosRankSum=-1.395;SOR=1.051;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:129,0,389:2,10,0,4
chr2	74089266	.	GA	G	59.18	PASS	AC=1;AF=0.5;AN=2;DP=228;MQ=60;set=filterInvariant2-variant6-variant15-variant22-variant39	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:624,0,506:20,6,21,10
chr2	74090063	.	TA	T	3444.3	PASS	AC=1;AF=0.587;AN=2;DP=5607;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:163,166:329:99:4056,0,3952:91,72,86,80
chr2	74091097	.	T	C	4470.46	PASS	AC=1;AF=0.5;AN=2;DP=2574;MQ=60;set=variant-variant6-variant15-variant17-variant22-variant23-variant36-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:159,163:322:99:3965,0,3706:73,86,74,89
chr2	74091327	.	T	C	808.6	PASS	AC=1;AF=0.648;AN=2;DP=1557;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,41:87:99:1105,0,1156:19,27,20,21
chr2	74091674	.	T	G	368.4	PASS	AC=1;AF=0.5;AN=2;DP=218;MQ=60;set=variant6-variant15-variant22-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:999,0,790:15,15,19,20
chr2	74091725	.	A	G	523.27	PASS	AC=1;AF=0.5;AN=2;DP=248;MQ=60;set=variant6-variant15-variant22-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:1148,0,810:15,17,23,16
chr2	74091805	.	C	T	682.57	PASS	AC=1;AF=0.587;AN=2;DP=1608;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,41:77:99:1013,0,838:18,18,22,19
chr2	74092119	.	C	T	569.63	PASS	AC=1;AF=0.5;AN=2;DP=435;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant15-variant17-variant22-variant23-variant36-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,28:67:99:604,0,993:24,15,17,11
chr2	74092176	.	T	G	680.79	PASS	AC=1;AF=0.5;AN=2;DP=201;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant22	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:821,0,1150:23,26,20,19
chr2	74092844	.	C	G	2865.83	PASS	AC=1;AF=0.5;AN=2;DP=1159;MQ=60;set=variant6-variant15-variant22-variant39	GT:AD:DP:GQ:PL:SB	0/1:170,172:342:99:4219,0,4113:75,95,78,94
chr2	74092927	.	G	GC	1421.6	PASS	AC=1;AF=0.5;AN=2;DP=605;MQ=60;set=variant6-variant15-variant22-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,61:131:99:1654,0,2017:21,49,21,40
chr2	74093652	.	T	C	1180.11	PASS	AC=1;AF=0.58;AN=2;DP=2833;MQ=60;set=variant-variant2-variant6-variant7-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1637,0,1570:31,33,26,37
chr2	74093682	.	T	A	1210.94	PASS	AC=1;AF=0.58;AN=2;DP=2445;MQ=60;set=variant-variant2-variant6-variant7-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,55:118:99:1507,0,1684:26,37,23,32
chr2	74093833	.	G	T	783.52	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant22-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:824,0,969:18,16,12,19
chr2	74119927	.	G	T	136.15	PASS	AC=1;AF=0.75;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:164,0,111:2,2,4,2
chr2	74120181	.	A	G	976.83	PASS	AC=1;AF=0.62;AN=2;DP=1403;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:697,0,562:7,15,15,14
chr2	74123827	.	C	T	131.98	PASS	AC=2;AF=0.798;AN=2;DP=717;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:892,78,0:0,0,16,10
chr2	74124142	.	C	T	649.63	PASS	AC=2;AF=0.791;AN=2;DP=3040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2269,231,0:0,0,36,41
chr2	74124171	.	G	A	507.99	PASS	AC=2;AF=0.798;AN=2;DP=2694;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1961,199,0:0,0,32,35
chr2	74124342	.	A	G	311.36	PASS	AC=2;AF=0.791;AN=2;DP=1644;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1467,138,0:0,0,21,25
chr2	74124528	.	T	C	93.19	PASS	AC=2;AF=0.868;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:236,21,0:0,0,1,6
chr2	74128361	.	T	G	2934.22	PASS	AC=1;AF=0.656;AN=2;DP=2826;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,59:113:99:2336,0,2088:41,13,44,15
chr2	74128369	.	G	A	3220.66	PASS	AC=1;AF=0.656;AN=2;DP=3240;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,64:121:99:2436,0,2192:43,14,47,17
chr2	74128391	.	G	C	1069.2	PASS	AC=2;AF=0.814;AN=2;DP=5720;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4762,462,0:0,0,98,56
chr2	74128433	.	C	T	1772.68	PASS	AC=2;AF=0.814;AN=2;DP=8509;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,236:236:99:7059,707,0:0,0,133,103
chr2	74129664	.	A	G	4704.79	PASS	AC=2;AF=0.662;AN=2;DP=7374;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,297:298:99:9400,853,0:1,0,159,138
chr2	74129712	.	C	G	5052.08	PASS	AC=2;AF=0.662;AN=2;DP=7689;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,281:281:99:8885,842,0:0,0,138,143
chr2	74129895	.	G	A	4704.72	PASS	AC=2;AF=0.662;AN=2;DP=5758;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6213,600,0:0,0,80,121
chr2	74130024	.	C	A	1882.87	PASS	AC=2;AF=0.672;AN=2;DP=2107;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2419,216,0:0,0,33,39
chr2	74130240	.	G	A	2619.46	PASS	AC=2;AF=0.672;AN=2;DP=2728;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2424,228,0:0,0,31,45
chr2	74135380	.	G	A	3172.35	PASS	AC=2;AF=0.672;AN=2;DP=3577;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3573,333,0:0,0,73,38
chr2	74135797	.	T	C	1602.26	PASS	AC=2;AF=0.692;AN=2;DP=2750;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2499,228,0:0,0,50,26
chr2	74135898	.	A	G	4935.28	PASS	AC=2;AF=0.697;AN=2;DP=6365;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5753,584,0:0,0,107,88
chr2	74140581	.	A	T	1163.01	PASS	AC=2;AF=0.692;AN=2;DP=1986;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2318,213,0:0,0,53,18
chr2	74140789	.	T	C	3409.53	PASS	AC=2;AF=0.692;AN=2;DP=5725;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,173:175:99:5245,475,0:1,1,73,100
chr2	74140888	.	A	C	953.72	PASS	AC=2;AF=0.672;AN=2;DP=1416;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,61:62:99:2074,146,0:1,0,16,45
chr2	74142164	.	GA	G	242.62	PASS	AC=2;AF=0.662;AN=2;DP=674;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:523,48,0:0,0,3,13
chr2	74146869	.	G	A	305.44	PASS	AC=2;AF=0.744;AN=2;DP=1431;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1413,144,0:0,0,18,30
chr2	74153905	.	C	T	3881.89	PASS	AC=2;AF=1;AN=2;DP=8005;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6019,580,0:0,0,116,78
chr2	74174145	.	A	G	43.74	PASS	AC=2;AF=0.763;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:375,36,0:0,0,5,7
chr2	74185876	.	A	T	1410.22	PASS	AC=2;AF=0.708;AN=2;DP=5241;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4687,455,0:0,0,80,72
chr2	74273383	.	T	TC	1149.23	PASS	AC=1;AF=0.586;AN=2;DP=2733;MQ=60;set=variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,51:108:99:1263,0,1403:34,23,29,22
chr2	74300717	.	T	C	1210.73	PASS	AC=1;AF=0.583;AN=2;DP=2958;MQ=60;set=variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,59:144:99:1426,0,2008:42,43,32,27
chr2	74320262	.	C	G	217.59	PASS	AC=1;AF=0.583;AN=2;DP=1015;MQ=60;set=variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:578,0,652:8,17,6,16
chr2	74326902	.	C	T	77.95	PASS	AC=1;AF=0.677;AN=2;DP=522;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant31-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:391,0,157:1,5,4,10
chr2	74327453	.	C	T	256.38	PASS	AC=1;AF=0.556;AN=2;DP=395;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant31-variant33-variant34-variant36-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:234,0,398:10,4,6,2
chr2	74330930	.	G	A	441.76	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.83;QD=7.89;ReadPosRankSum=0.814;SOR=0.588;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:470,0,937:16,18,11,11
chr2	74332825	.	AAAGC	A	1312.85	PASS	AC=2;AF=0.977;AN=2;DP=2182;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1991,136,0:0,0,22,23
chr2	74333220	.	C	CT	6402.99	PASS	AC=2;AF=0.977;AN=2;DP=12538;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:8,278:286:99:7519,665,0:3,5,118,160
chr2	74334462	.	G	A	1112.29	PASS	AC=1;AF=0.625;AN=2;DP=3140;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,58:123:99:1518,0,1862:36,29,29,29
chr2	74361641	.	T	C	230.31	PASS	AC=1;AF=0.645;AN=2;DP=289;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:281,0,311:8,1,8,0
chr2	74362090	.	A	G	623.04	PASS	AC=1;AF=0.955;AN=2;DP=943;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:445,0,199:0,6,1,11
chr2	74382116	.	CTAAG	C	1821.44	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=3.283;FractionInformativeReads=1;MQ=60;MQRankSum=-0.892;QD=18.4;ReadPosRankSum=1.718;SOR=1.188;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:50,49:99:99:1859,0,2826:37,13,40,9
chr2	74425947	.	G	T	1234.17	PASS	AC=1;AF=0.538;AN=2;DP=1579;MQ=60;set=variant2-variant4-variant5-variant7-variant15-variant16-variant18-variant19-variant20-variant24-variant30-variant31-variant35	GT:AD:DP:GQ:PL:SB	0/1:68,65:133:99:1552,0,1563:28,40,20,45
chr2	74442550	.	AT	A,ATT	36.39	PASS	AC=0,1;AF=0.357,0.143;AN=2;DP=598;set=filterInvariant2-filterInvariant3-filterInvariant5-variant6-filterInvariant15-variant21-variant25-variant31-filterInvariant32-filterInvariant33-variant35-filterInvariant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:32:99:3,17,4,8
chr2	74450058	.	C	T	2630.62	PASS	AC=1;AF=0.5;AN=2;DP=711;MQ=60;set=variant15-variant19-variant31-variant35	GT:AD:DP:GQ:PL:SB	0/1:72,105:177:99:2659,0,1648:27,45,44,61
chr2	74466594	.	G	A	2080.68	PASS	AC=1;AF=0.58;AN=2;DP=1769;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:880,0,895:16,23,18,22
chr2	74482892	.	T	C	727.61	PASS	AC=1;AF=0.543;AN=2;DP=1549;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,48:99:99:1245,0,1339:30,21,33,15
chr2	74486869	.	C	A	1976.64	PASS	AC=1;AF=0.5;AN=2;DP=1067;MQ=60;set=variant7-variant9-variant14-variant15-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:125,85:210:99:2089,0,3186:61,64,39,46
chr2	74489318	.	G	A	1958.81	PASS	AC=1;AF=0.5;AN=2;DP=1033;MQ=60;set=variant7-variant9-variant14-variant15-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:106,100:206:99:2380,0,2366:59,47,62,38
chr2	74489490	.	CTTT	CTT,CT,CTTTTT,C	168.93	PASS	AC=1,0,0,0;AF=0.426,0.074,0.037,0.019;AN=2;DP=854;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant13-filterInvariant15-variant16-filterInvariant19-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:20:86:3,10,2,5
chr2	74570654	.	A	G	33.95	PASS	AC=1;AF=0.528;AN=2;DP=189;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:163,0,28:0,1,1,4
chr2	74588605	.	G	A	1334.13	PASS	AC=1;AF=0.5;AN=2;DP=855;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant12-variant15-variant19-variant24-variant35	GT:AD:DP:GQ:PL:SB	0/1:67,57:124:99:1384,0,1897:38,29,27,30
chr2	74589019	.	A	G	500.96	PASS	AC=1;AF=0.528;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:374,0,757:8,20,4,10
chr2	74595014	.	G	A	2919.98	PASS	AC=1;AF=0.528;AN=2;DP=3596;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,129:221:99:3105,0,2285:46,46,59,70
chr2	74595483	.	G	A	235.68	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant14-variant15-variant28	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:180,0,178:1,5,0,5
chr2	74596168	.	G	GA	532.43	PASS	AC=1;AF=0.579;AN=2;DP=383;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:142,0,288:7,2,4,1
chr2	74597527	.	G	A	2006.4	PASS	AC=1;AF=0.528;AN=2;DP=3402;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:135,104:239:99:2437,0,3471:72,63,51,53
chr2	74598999	.	AAAG	A	816.2	PASS	AC=1;AF=0.571;AN=2;DP=635;MQ=60;set=variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant26-variant28-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:612,0,922:7,13,7,9
chr2	74601377	.	A	C	514.25	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1125;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:68,22:90:99:253,0,2955:18,50,22,0
chr2	74601383	.	A	C	233.47	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3101;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:70,30:100:99:522,0,1381:17,53,30,0
chr2	74604673	.	C	T	575.41	PASS	AC=1;AF=0.588;AN=2;DP=829;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,33:56:99:898,0,690:12,11,19,14
chr2	74604895	.	T	C	657.84	PASS	AC=1;AF=0.531;AN=2;DP=1255;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,53:89:99:1340,0,930:14,22,20,33
chr2	74641624	.	G	C	3135.96	PASS	AC=1;AF=0.575;AN=2;DP=4399;MQ=60;set=variant3-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:134,100:234:99:2381,0,3190:69,65,47,53
chr2	74649920	.	C	CA	214.57	PASS	AC=1;AF=0.5;AN=2;DP=337;set=variant7-filterInvariant9-variant15-filterInvariant24-filterInvariant28	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:406,0,895:29,14,19,16
chr2	74649921	.	C	A	773.95	PASS	AC=1;AF=0.5;AN=2;DP=2512;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,64:81:99:1553,0,178:11,6,37,27
chr2	74682512	.	C	T	2123.93	PASS	AC=1;AF=0.575;AN=2;DP=2133;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,75:131:99:1913,0,1471:27,29,41,34
chr2	74687258	.	A	ACACATTT	8084.6	PASS	AC=1;AF=0.553;AN=2;DP=7200;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,163:339:99:6361,0,9896:69,107,59,104
chr2	74687550	.	T	C	1909.38	PASS	AC=1;AF=0.553;AN=2;DP=2962;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,81:170:99:2062,0,2017:55,34,46,35
chr2	74690039	.	G	A	1847.92	PASS	AC=1;AF=0.575;AN=2;DP=2843;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,85:170:99:2047,0,1972:42,43,39,46
chr2	74690378	.	C	T	1780.45	PASS	AC=1;AF=0.553;AN=2;DP=2200;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,62:144:99:1509,0,2086:49,33,44,18
chr2	74692647	.	T	C	601.64	PASS	AC=1;AF=0.575;AN=2;DP=912;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,27:72:99:669,0,1231:13,32,9,18
chr2	74699778	.	C	A	1552.43	PASS	AC=1;AF=0.553;AN=2;DP=2118;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1412,0,1672:21,40,19,33
chr2	74710491	.	C	T	2236.63	PASS	AC=1;AF=0.575;AN=2;DP=2612;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,95:166:99:2455,0,1718:39,32,47,48
chr2	74719910	.	G	T	933.24	PASS	AC=1;AF=0.556;AN=2;DP=1219;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,30:76:99:787,0,1125:27,19,15,15
chr2	74720002	.	C	G	1754.44	PASS	AC=2;AF=0.977;AN=2;DP=3163;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2647,246,0:0,0,41,41
chr2	74721055	.	A	G	526.51	PASS	AC=1;AF=0.575;AN=2;DP=924;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:771,0,921:17,19,13,18
chr2	74725144	.	T	C	7133.06	PASS	AC=2;AF=0.907;AN=2;DP=9194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:8377,783,0:0,0,154,108
chr2	74725178	.	G	A	3376.4	PASS	AC=1;AF=0.559;AN=2;DP=4147;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,164:299:99:4050,0,3187:73,62,93,71
chr2	74726760	.	C	T	521.28	PASS	AC=1;AF=0.559;AN=2;DP=798;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:874,0,617:9,16,11,21
chr2	74732415	.	T	G	1120.68	PASS	AC=1;AF=0.553;AN=2;DP=1191;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:913,0,797:14,17,15,17
chr2	74735614	.	T	C	944.28	PASS	AC=1;AF=0.571;AN=2;DP=859;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:537,0,693:14,16,9,12
chr2	74745173	.	T	C	43.74	PASS	AC=1;AF=0.75;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant21-variant28	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:88,0,34:1,0,2,1
chr2	74746080	.	C	T	245.88	PASS	AC=1;AF=0.563;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant21-variant24-variant26-variant32-variant34-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:179,0,238:6,0,5,0
chr2	74746322	.	A	T	1805.69	PASS	AC=1;AF=0.575;AN=2;DP=2385;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,75:151:99:1629,0,1707:39,37,36,39
chr2	74751022	.	G	GT	1134.81	PASS	AC=1;AF=0.5;AN=2;DP=927;MQ=60;set=variant9-variant14-variant15-variant21-variant24-variant27-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:77,54:131:99:1176,0,1920:38,39,26,28
chr2	74755778	.	A	C	861.08	PASS	AC=1;AF=0.548;AN=2;DP=888;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,12:43:99:226,0,873:19,12,8,4
chr2	74756111	.	G	GA	1320.83	PASS	AC=1;AF=0.548;AN=2;DP=1841;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1066,0,1239:39,16,36,13
chr2	74756176	.	G	C	2946.62	PASS	AC=1;AF=0.548;AN=2;DP=3829;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,137:237:99:3695,0,2597:67,33,91,46
chr2	74757554	.	G	T	2037.55	PASS	AC=1;AF=0.5;AN=2;DP=579;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:118,110:228:99:2544,0,3039:52,66,46,64
chr2	74758934	.	G	A	577.98	PASS	AC=1;AF=0.5;AN=2;DP=380;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant21-variant24-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:823,0,1072:24,11,19,9
chr2	74761422	.	T	C	5705.38	PASS	AC=1;AF=0.55;AN=2;DP=8288;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:248,254:502:99:6427,0,6234:126,122,124,130
chr2	74781070	.	CAA	CA,CAAA,C	57.65	PASS	AC=1,0,0;AF=0.4,0.05,0.05;AN=2;DP=191;MQ=60;set=filterInvariant2-variant5-filterInvariant12-variant15-variant19-variant20-variant28-variant30-variant39-variant42	GT:DP:GQ:SB	0/1:22:99:8,7,4,3
chr2	74781577	.	T	C	3325.75	PASS	AC=1;AF=0.531;AN=2;DP=1548;MQ=60;set=variant9-variant10-variant13-variant14-variant15-variant18-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,44:125:99:993,0,1947:44,37,25,19
chr2	74789700	.	A	T	198.41	PASS	AC=1;AF=0.556;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:341,0,270:1,7,2,8
chr2	74900588	.	G	T	244.48	PASS	AC=1;AF=0.5;AN=2;DP=262;MQ=60;set=variant9-variant14-variant15-variant21-variant24-variant28-variant34	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:442,0,496:13,6,11,4
chr2	74901602	.	C	T	719.99	PASS	AC=1;AF=0.529;AN=2;DP=1507;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant26-variant28-variant32-variant34-variant37-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,51:117:99:1276,0,1536:34,32,27,24
chr2	74902872	.	A	G	1963.64	PASS	AC=1;AF=0.55;AN=2;DP=2850;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,107:188:99:3069,0,1864:37,44,45,62
chr2	74907964	.	A	G	557.3	PASS	AC=1;AF=0.55;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:505,0,835:16,14,10,11
chr2	74908299	.	C	T	921.21	PASS	AC=1;AF=0.529;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant13-variant14-variant15-variant18-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:213,0,355:6,7,3,5
chr2	75061873	.	C	G	6865	PASS	AC=2;AF=0.841;AN=2;DP=7268;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:6048,555,0:0,0,63,122
chr2	75095103	.	G	GTA	1087.07	PASS	AC=2;AF=0.729;AN=2;DP=664;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant34-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1564,105,0:0,0,7,28
chr2	75099477	.	A	T	1525.24	PASS	AC=1;AF=0.525;AN=2;DP=1855;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,69:117:99:1689,0,1059:28,20,41,28
chr2	75101454	.	T	C	1939.5	PASS	AC=1;AF=0.545;AN=2;DP=3479;set=variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,95:180:99:2308,0,1967:56,29,53,42
chr2	75104570	.	A	G	656.09	PASS	AC=1;AF=0.528;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant31-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:570,0,1274:8,16,2,14
chr2	75104575	.	G	A	631.41	PASS	AC=1;AF=0.528;AN=2;DP=501;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant31-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:522,0,1237:6,15,1,13
chr2	75105798	.	A	G	1862.74	PASS	AC=2;AF=1;AN=2;DP=5195;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4452,444,0:0,0,75,73
chr2	75107367	.	T	G	3640.08	PASS	AC=1;AF=0.5;AN=2;DP=4593;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant21-variant23-variant26-variant28-variant31-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:167,137:304:99:3269,0,4260:89,78,74,63
chr2	75113572	.	G	A	762.98	PASS	AC=1;AF=0.659;AN=2;DP=5510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,68:160:99:1483,0,2259:47,45,34,34
chr2	75113789	.	C	G	981.05	PASS	AC=1;AF=0.655;AN=2;DP=6602;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,85:189:99:1913,0,2553:53,51,44,41
chr2	75113903	.	A	G	877.2	PASS	AC=1;AF=0.528;AN=2;DP=1251;set=variant11-variant12-variant14-variant15-variant16-variant18-variant21-variant23-variant26-variant28-variant30-variant31-variant34-variant35-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,40:83:99:1002,0,1224:11,32,15,25
chr2	75115108	.	A	G	1335.27	PASS	AC=2;AF=0.725;AN=2;DP=2172;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2021,189,0:0,0,36,27
chr2	75116627	.	C	T	169.32	PASS	AC=1;AF=0.695;AN=2;DP=2680;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,29:80:99:686,0,1387:17,34,10,19
chr2	75118330	.	T	G	4410.86	PASS	AC=1;AF=0.674;AN=2;DP=14783;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:173,215:388:99:5383,0,4104:78,95,90,125
chr2	75118737	.	C	T	621.58	PASS	AC=1;AF=0.659;AN=2;DP=2740;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:999,0,941:18,20,22,19
chr2	75118856	.	T	C	476.77	PASS	AC=1;AF=0.667;AN=2;DP=1429;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,17:65:99:459,0,1171:23,25,6,11
chr2	75118884	.	G	GA	246.54	PASS	AC=1;AF=0.684;AN=2;DP=1347;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:52,20:72:99:516,0,1730:26,26,8,12
chr2	75118913	.	TAATG	T	451.45	PASS	AC=1;AF=0.684;AN=2;DP=1326;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-filterInvariant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,17:68:99:560,0,2774:23,28,5,12
chr2	75120159	.	CT	CTTT,CTT,C	1372.33	PASS	AC=1,0,0;AF=0.4,0.113,0.075;AN=2;DP=7515;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-filterInvariant37-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:160:99:53,34,48,25
chr2	75185667	.	C	G	1998.59	PASS	AC=2;AF=0.849;AN=2;DP=3014;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2386,243,0:0,0,41,40
chr2	75185856	.	G	T	1571.93	PASS	AC=2;AF=0.618;AN=2;DP=6365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:4,191:195:99:5582,535,0:4,0,119,72
chr2	75187573	.	G	A	2690.39	PASS	AC=2;AF=0.849;AN=2;DP=2738;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2882,278,0:0,0,57,36
chr2	75187793	.	A	T	848.09	PASS	AC=2;AF=0.845;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:865,69,0:0,0,2,21
chr2	75187869	.	T	C	82.47	PASS	AC=2;AF=0.768;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr2	75281054	.	G	T	467.6	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant4-variant13-variant15-variant20-variant21-variant25-variant26-variant33-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:281,0,499:2,13,6,8
chr2	75719537	.	T	TAA,TA,TTA,TTAA,TAAA	548.19	PASS	AC=1,1,0,0,0;AF=0.261,0.193,0.205,0.011,0.011;AN=2;DP=4196;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	2/1:70:99:5,6,21,38
chr2	75744918	.	T	C	593.42	PASS	AC=1;AF=0.645;AN=2;DP=2902;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,47:87:99:1186,0,858:23,17,26,21
chr2	75745081	.	T	C	445.98	PASS	AC=1;AF=0.574;AN=2;DP=2531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,34:85:99:894,0,1356:26,25,17,17
chr2	75753308	.	G	C	244.4	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.212;QD=15.28;ReadPosRankSum=-0.423;SOR=0.569;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:273,0,188:2,5,3,6
chr2	75753399	.	A	G	94.73	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=23.68;ReadPosRankSum=0.727;SOR=1.609;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:29:123,0,29:0,1,0,3
chr2	75787767	.	GC	G	485.66	PASS	AC=2;AF=1;AN=2;DP=997;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1028,96,0:0,0,22,10
chr2	75787972	.	G	C	447.81	PASS	AC=1;AF=0.617;AN=2;DP=1412;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:868,0,846:13,22,14,20
chr2	75788396	.	C	A	308.62	PASS	AC=1;AF=0.5;AN=2;DP=254;MQ=60;set=variant9-variant14-variant15-variant31-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:453,0,457:7,10,11,9
chr2	75873733	.	T	C	560.53	PASS	AC=2;AF=0.725;AN=2;DP=1146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1516,110,0:0,0,35,2
chr2	75874015	.	C	G,A	1541.98	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=524;MQ=60;set=variant13-variant15-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:117:99:23,39,20,35
chr2	75874090	.	T	C	1960.8	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0.759;FractionInformativeReads=1;MQ=60;MQRankSum=-0.936;QD=20.01;ReadPosRankSum=1.192;SOR=0.853;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:46,52:98:99:1989,0,1970:23,23,28,24
chr2	75874091	.	G	T	1349.57	PASS	AC=1;AF=0.5;AN=2;DP=327;MQ=60;set=variant13-variant15-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,52:100:99:1989,0,1970:24,24,28,24
chr2	75879441	.	T	C	557.84	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;FractionInformativeReads=0.977;MQ=60;MQRankSum=0.038;QD=12.97;ReadPosRankSum=1.171;SOR=0.646;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:586,0,500:7,13,8,14
chr2	75879452	.	G	C	422.44	PASS	AC=1;AF=0.54;AN=2;DP=933;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:523,0,594:9,14,9,12
chr2	75881828	.	T	C	1284.44	PASS	AC=1;AF=0.6;AN=2;DP=3986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,72:147:99:1624,0,1680:39,36,43,29
chr2	75882156	.	CTTT	CTT,CT,C	60.7	PASS	AC=1,0,0;AF=0.404,0.115,0.019;AN=2;DP=584;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant25-variant31-variant33-variant34-variant36-variant37-variant39-variant40	GT:DP:GQ:SB	0/1:18:70:4,2,7,5
chr2	75882399	.	G	A	901.92	PASS	AC=1;AF=0.54;AN=2;DP=1622;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,38:93:99:1028,0,1352:23,32,16,22
chr2	75882576	.	T	C	805.96	PASS	AC=1;AF=0.6;AN=2;DP=1792;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:1048,0,842:21,11,20,17
chr2	75882855	.	A	G	2481.52	PASS	AC=1;AF=0.54;AN=2;DP=5033;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:137,129:266:99:3062,0,3277:76,61,62,67
chr2	75883007	.	G	GAA,GA	1127.33	PASS	AC=1,0;AF=0.483,0.117;AN=2;DP=3098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:85:99:16,30,14,25
chr2	75883276	.	C	T	1915.39	PASS	AC=1;AF=0.54;AN=2;DP=3549;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,79:176:99:1948,0,2457:52,45,48,31
chr2	75883390	.	G	T	2012.81	PASS	AC=1;AF=0.6;AN=2;DP=4091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,77:171:99:1935,0,2396:43,51,31,46
chr2	75883878	.	T	C	6942.97	PASS	AC=1;AF=0.586;AN=2;DP=13081;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:273,278:551:99:7075,0,7116:131,142,130,148
chr2	75884988	.	CT	C	759.16	PASS	AC=1;AF=0.6;AN=2;DP=2024;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,48:81:99:1092,0,683:5,28,9,39
chr2	75889728	.	A	ATT	49.42	PASS	AC=1;AF=0.611;AN=2;DP=107;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant13-variant15-variant25-variant28-variant33-variant34-variant35-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:126,0,361:7,2,4,0
chr2	75890030	.	TA	TAA,T,TAAA	666.61	PASS	AC=0,1,0;AF=0.143,0.339,0.018;AN=2;DP=2912;set=variant3-filterInvariant4-filterInvariant5-filterInvariant7-variant9-variant10-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant17-variant19-filterInvariant21-variant22-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant29-filterInvariant30-variant31-filterInvariant32-filterInvariant33-variant37-variant38-filterInvariant39-variant40-filterInvariant42-variant43	GT:DP:GQ:SB	0/2:97:99:50,31,10,6
chr2	75890408	.	A	G	671.21	PASS	AC=1;AF=0.6;AN=2;DP=2231;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,55:113:99:1404,0,1401:25,33,19,36
chr2	75890540	.	T	C	679.01	PASS	AC=1;AF=0.6;AN=2;DP=1793;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,40:77:99:995,0,956:19,18,23,17
chr2	75892111	.	T	C	281.46	PASS	AC=1;AF=0.54;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:481,0,631:4,17,4,13
chr2	75897939	.	A	C	71.28	PASS	AC=2;AF=0.75;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant13-variant15-variant24-variant35-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,0,2
chr2	75899167	.	A	G	811.74	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=7.227;FractionInformativeReads=1;MQ=60;MQRankSum=1.493;QD=12.88;ReadPosRankSum=-0.874;SOR=1.609;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:840,0,787:13,20,7,23
chr2	75900700	.	C	CA	140.32	PASS	AC=1;AF=0.54;AN=2;DP=669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-filterInvariant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:167,0,485:7,13,1,8
chr2	75906972	.	G	A	884.95	PASS	AC=1;AF=0.54;AN=2;DP=1811;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1060,0,994:17,24,15,26
chr2	75915035	.	C	T	1533.76	PASS	AC=1;AF=0.6;AN=2;DP=3715;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,62:153:99:1428,0,2095:44,47,25,37
chr2	75918986	.	T	TAA	40.38	PASS	AC=1;AF=0.639;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant35-variant38	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:103,0,240:5,1,3,0
chr2	75919272	.	AATATAT	AAT,AATAT,A	979.76	PASS	AC=2,0,0;AF=0.774,0.065,0.016;AN=2;DP=874;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:19:58:0,0,4,15
chr2	75919292	.	T	C	986.65	PASS	AC=2;AF=0.86;AN=2;DP=474;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:855,57,0:0,0,4,15
chr2	75919294	.	T	C	986.54	PASS	AC=2;AF=0.897;AN=2;DP=487;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:855,57,0:0,0,4,15
chr2	75919296	.	T	C	961.77	PASS	AC=2;AF=0.9;AN=2;DP=468;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:57:855,57,0:0,0,4,13
chr2	75923413	.	T	C	2827.01	PASS	AC=2;AF=0.622;AN=2;DP=3219;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2900,288,0:0,0,56,40
chr2	75928233	.	G	A	303.38	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.53;QD=16.85;ReadPosRankSum=-1.06;SOR=1.781;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:332,0,262:8,1,9,0
chr2	75928300	.	G	T	1018.84	PASS	AC=1;AF=0.6;AN=2;DP=1517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:1154,0,918:23,11,29,9
chr2	75929130	.	C	A	4449.34	PASS	AC=1;AF=0.571;AN=2;DP=7247;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:151,131:282:99:2972,0,3471:68,83,56,75
chr2	75929238	.	C	A	1107.09	PASS	AC=1;AF=0.6;AN=2;DP=2879;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,38:96:99:1109,0,1868:18,40,10,28
chr2	75933830	.	T	A	378.69	PASS	AC=1;AF=0.6;AN=2;DP=998;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:744,0,638:4,18,9,18
chr2	76975383	.	A	G	607.17	PASS	AC=1;AF=0.628;AN=2;DP=2277;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:1112,0,1069:16,28,17,23
chr2	77744334	.	C	T	3770.89	PASS	AC=1;AF=0.5;AN=2;DP=297;FS=2.724;FractionInformativeReads=1;MQ=60;MQRankSum=2.91;QD=12.7;ReadPosRankSum=1.544;SOR=0.528;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:150,147:297:99:3799,0,4128:45,105,50,97
chr2	77744821	.	CA	CAA,C,CAAA	530.12	PASS	AC=0,1,0;AF=0.238,0.429,0.024;AN=2;DP=2517;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:52:99:9,17,8,18
chr2	77745255	.	TAA	TA,T,TAAA	641.91	PASS	AC=0,1,0;AF=0.15,0.363,0.025;AN=2;DP=9981;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/2:240:99:67,77,44,52
chr2	79252950	.	A	G	144.28	PASS	AC=2;AF=0.786;AN=2;DP=1329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1263,99,0:0,0,18,15
chr2	79253146	.	T	C	3058.99	PASS	AC=1;AF=0.5;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:146,118:264:99:3087,0,3659:83,63,68,50
chr2	79254261	.	T	C	270.18	PASS	AC=2;AF=0.786;AN=2;DP=4728;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4214,396,0:0,0,43,89
chr2	79255325	.	G	C	1210.51	PASS	AC=2;AF=0.609;AN=2;DP=3078;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3312,312,0:0,0,57,47
chr2	79255426	.	G	C	963.91	PASS	AC=2;AF=0.786;AN=2;DP=4495;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4396,404,0:0,0,73,62
chr2	79255629	.	G	T	619.67	PASS	AC=2;AF=0.786;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2641,258,0:0,0,32,54
chr2	79312414	.	G	A	3141.16	PASS	AC=1;AF=0.789;AN=2;DP=3641;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,51:125:99:1157,0,1834:35,39,26,25
chr2	79313815	.	G	T	3395.65	PASS	AC=1;AF=0.788;AN=2;DP=4983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,80:145:99:1906,0,1658:35,30,45,35
chr2	79314094	.	G	T	1098.52	PASS	AC=1;AF=0.788;AN=2;DP=2002;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,29:43:99:923,0,306:3,11,7,22
chr2	79314876	.	C	A	1572.08	PASS	AC=1;AF=0.795;AN=2;DP=2321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:1156,0,1286:20,28,16,26
chr2	79347487	.	G	A	266.39	PASS	AC=2;AF=1;AN=2;DP=1031;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:988,102,0:0,0,22,12
chr2	79347603	.	T	C	92.13	PASS	AC=1;AF=0.596;AN=2;DP=1057;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:763,0,750:16,16,13,15
chr2	79347745	.	T	G	234.38	PASS	AC=1;AF=0.697;AN=2;DP=896;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:401,0,513:6,13,6,9
chr2	79348129	.	GAA	G,GA	1813.01	PASS	AC=0,2;AF=0.068,0.92;AN=2;DP=4834;set=Intersection	GT:DP:GQ:SB	2/2:99:99:3,6,31,59
chr2	79349372	.	C	G	984.28	PASS	AC=1;AF=0.641;AN=2;DP=2119;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:1088,0,1089:17,27,18,26
chr2	79350186	.	G	A	1572.11	PASS	AC=1;AF=0.593;AN=2;DP=3656;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,73:142:99:1645,0,1918:24,45,36,37
chr2	79350347	.	A	G	3490.96	PASS	AC=2;AF=1;AN=2;DP=5169;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.629;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4803,471,0:0,0,84,73
chr2	79350505	.	C	T	758.98	PASS	AC=1;AF=0.593;AN=2;DP=1703;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1185,0,816:10,23,14,29
chr2	79412540	.	G	GA	129.18	PASS	AC=1;AF=0.605;AN=2;DP=395;MQ=60;set=variant-variant2-variant8-variant9-variant11-variant15-variant16-variant18-variant25-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:264,0,266:4,8,5,7
chr2	79422965	.	C	G	1453.13	PASS	AC=1;AF=0.661;AN=2;DP=2073;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,36:92:99:779,0,1356:30,26,19,17
chr2	79539988	.	G	C	893.85	PASS	AC=1;AF=0.529;AN=2;DP=980;MQ=60;set=variant5-variant8-variant15-variant18-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant34-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,38:63:99:973,0,551:9,16,13,25
chr2	79540011	.	T	C	457.41	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.263;QD=10.16;ReadPosRankSum=0.683;SOR=0.836;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:486,0,745:7,20,4,14
chr2	79600914	.	C	T	238.54	PASS	AC=2;AF=0.843;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:543,54,0:0,0,12,6
chr2	79600948	.	A	C	63.56	PASS	AC=2;AF=0.846;AN=2;DP=476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:640,69,0:0,0,14,9
chr2	79601000	.	G	C	75.16	PASS	AC=2;AF=0.825;AN=2;DP=732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:918,96,0:0,0,20,12
chr2	79601273	.	A	T	51.23	PASS	AC=2;AF=0.829;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:866,78,0:0,0,11,15
chr2	79750543	.	C	T	235.31	PASS	AC=1;AF=0.878;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:97:199,0,97:0,3,1,5
chr2	79914570	.	C	CT,CTT	369.89	PASS	AC=2,0;AF=0.646,0.037;AN=2;DP=2049;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:49:17:4,1,34,10
chr2	80772972	.	G	A	3566.5	PASS	AC=1;AF=0.62;AN=2;DP=3342;set=variant2-variant3-variant4-variant8-variant9-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,122:208:99:3011,0,2014:47,39,64,58
chr2	80801346	.	T	C	3038.46	PASS	AC=1;AF=0.625;AN=2;DP=3393;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,59:110:99:1361,0,1355:28,23,32,27
chr2	80809027	.	C	G	203.53	PASS	AC=1;AF=0.611;AN=2;DP=568;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,7:27:99:214,0,665:3,17,0,7
chr2	80831481	.	G	A	876.51	PASS	AC=1;AF=0.586;AN=2;DP=1368;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:641,0,713:6,15,8,16
chr2	80846147	.	C	CT	67.41	PASS	AC=1;AF=0.6;AN=2;DP=918;set=filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:324,0,230:10,5,13,5
chr2	80875611	.	C	A	6044.82	PASS	AC=1;AF=0.589;AN=2;DP=12380;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:307,252:559:99:5900,0,7779:136,171,112,140
chr2	80875726	.	C	CT	1575.98	PASS	AC=1;AF=0.589;AN=2;DP=3962;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,69:152:99:1712,0,2171:22,61,19,50
chr2	83083845	.	C	T	804.7	PASS	AC=1;AF=0.534;AN=2;DP=1163;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:854,0,583:17,5,22,6
chr2	84650707	.	A	G	6583.48	PASS	AC=2;AF=0.907;AN=2;DP=9380;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,239:240:99:7421,679,0:1,0,116,123
chr2	84676163	.	C	A	920.05	PASS	AC=2;AF=0.907;AN=2;DP=1936;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1238,120,0:0,0,16,24
chr2	84676886	.	TAAAAAAA	TAAAA,TAAA,TAAAAA,TAAAAAA,TA,TAA,T	235.32	PASS	AC=0,2,0,0,0,0,0;AF=0.292,0.361,0.042,0.028,0.014,0.042,0.014;AN=2;DP=853;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:22:47:2,0,8,12
chr2	84686610	.	A	G	1169.68	PASS	AC=1;AF=0.5;AN=2;DP=799;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant18-variant19-variant21-variant22-variant35-variant36	GT:AD:DP:GQ:PL:SB	0/1:27,41:68:99:1170,0,778:6,21,16,25
chr2	84755996	.	A	AT,ATT,ATTT	1688.6	PASS	AC=2,0,0;AF=0.709,0.163,0.047;AN=2;DP=2582;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:97:99:0,0,61,36
chr2	84756049	.	G	A	3190.51	PASS	AC=2;AF=0.919;AN=2;DP=4512;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4026,391,0:0,0,60,71
chr2	84756341	.	T	G	310.27	PASS	AC=2;AF=0.94;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:262,21,0:0,0,1,6
chr2	84771480	.	G	A	1821.59	PASS	AC=2;AF=0.919;AN=2;DP=2807;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1457,152,0:0,0,23,28
chr2	84771567	.	C	T	1220.31	PASS	AC=2;AF=0.907;AN=2;DP=1815;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1020,90,0:0,0,7,23
chr2	84775673	.	A	T	211.45	PASS	AC=1;AF=0.583;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:289,0,215:1,6,4,6
chr2	84800605	.	C	A	2659.02	PASS	AC=2;AF=0.919;AN=2;DP=2446;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2171,219,0:0,0,37,36
chr2	84806553	.	G	A	724.62	PASS	AC=2;AF=0.93;AN=2;DP=538;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:664,51,0:0,0,14,3
chr2	84822715	.	C	T	950.41	PASS	AC=2;AF=0.919;AN=2;DP=1291;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1534,128,0:0,0,36,7
chr2	84831767	.	G	A	233.51	PASS	AC=2;AF=0.921;AN=2;DP=194;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:223,18,0:0,0,1,5
chr2	84834063	.	T	C	3698.27	PASS	AC=2;AF=0.93;AN=2;DP=5262;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4792,468,0:0,0,95,61
chr2	84834237	.	T	C	2248.83	PASS	AC=2;AF=0.895;AN=2;DP=2793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2757,237,0:0,0,18,61
chr2	84880445	.	G	C	450.92	PASS	AC=1;AF=0.545;AN=2;DP=723;MQ=60;set=variant2-variant4-variant7-variant8-variant14-variant15-variant24-variant25-variant27-variant29-variant30	GT:AD:DP:GQ:PL:SB	0/1:52,51:103:99:1164,0,1240:30,22,30,21
chr2	84897361	.	T	A	369.76	PASS	AC=1;AF=0.872;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,208:5,0,2,0
chr2	84897517	.	A	G	1905	PASS	AC=2;AF=0.93;AN=2;DP=2575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2193,225,0:0,0,38,37
chr2	84899360	.	G	A	1090.12	PASS	AC=1;AF=0.86;AN=2;DP=1510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:261,0,635:13,7,7,3
chr2	84899638	.	G	A	920.51	PASS	AC=1;AF=0.5;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant25-variant30	GT:AD:DP:GQ:PL:SB	0/1:50,28:78:99:789,0,1352:16,34,5,23
chr2	84915469	.	A	T	570.57	PASS	AC=1;AF=0.591;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant15-variant17-variant20-variant25-variant30-variant32-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:171,0,500:13,7,6,2
chr2	84924823	.	T	C	6119.94	PASS	AC=1;AF=0.591;AN=2;DP=2214;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant15-variant17-variant20-variant25-variant30-variant32-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:137,122:259:99:3037,0,3113:73,64,62,60
chr2	84940477	.	T	C	713.54	PASS	AC=1;AF=0.607;AN=2;DP=290;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant15-variant17-variant20-variant25-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:120,0,177:1,4,0,4
chr2	84950006	.	T	C	214.99	PASS	AC=1;AF=0.6;AN=2;DP=321;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:94:286,0,94:1,2,4,6
chr2	84955129	.	T	G	271.63	PASS	AC=1;AF=0.545;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant15-variant20-variant25-variant30-variant32-variant33-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:162,0,516:1,14,0,5
chr2	85014641	.	C	CA	107.5	PASS	AC=1;AF=0.556;AN=2;DP=213;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant36-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:197,0,268:1,8,2,5
chr2	85023554	.	A	G	500.71	PASS	AC=1;AF=0.526;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,43:84:99:959,0,951:22,19,21,22
chr2	85023653	.	G	C	284.29	PASS	AC=1;AF=0.526;AN=2;DP=739;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,19:51:99:517,0,731:14,18,6,13
chr2	85024731	.	C	T	2175.69	PASS	AC=1;AF=0.533;AN=2;DP=2113;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant27-variant29-variant30-variant32-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:70,77:147:99:1831,0,1813:34,36,36,41
chr2	85040393	.	G	C	696.57	PASS	AC=1;AF=0.575;AN=2;DP=751;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:614,0,689:3,18,5,15
chr2	85040405	.	A	G	448.05	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:476,0,480:2,13,2,13
chr2	85040418	.	A	G	499.35	PASS	AC=1;AF=0.529;AN=2;DP=392;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:180,0,365:2,9,2,5
chr2	85041295	.	T	C	77.47	PASS	AC=1;AF=0.533;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant27-variant29-variant30-variant32-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:397,0,480:4,13,4,10
chr2	85041316	.	T	C	49.73	PASS	AC=1;AF=0.579;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:264,0,310:3,9,4,7
chr2	85051122	.	G	A	1674.06	PASS	AC=1;AF=0.529;AN=2;DP=1773;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,58:133:99:1422,0,1891:45,30,36,22
chr2	85059063	.	G	A	189.61	PASS	AC=1;AF=0.575;AN=2;DP=416;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant21-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:528,0,229:6,2,13,6
chr2	85066245	.	G	A	540.42	PASS	AC=1;AF=0.531;AN=2;DP=843;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant14-variant15-variant20-variant21-variant27-variant29-variant30-variant32-variant33-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:650,0,381:10,8,16,14
chr2	85097590	.	C	T	2178.74	PASS	AC=1;AF=0.5;AN=2;DP=925;MQ=60;set=variant14-variant15-variant24-variant29	GT:AD:DP:GQ:PL:SB	0/1:153,125:278:99:3037,0,3816:79,74,64,61
chr2	85108252	.	G	GC	1448.48	PASS	AC=2;AF=1;AN=2;DP=1595;FS=0;MQ=60;MQRankSum=1.238;ReadPosRankSum=1.65;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,41:42:99:1522,116,0:0,1,13,28
chr2	85108309	.	T	C	107.69	PASS	AC=1;AF=0.556;AN=2;DP=320;MQ=60;set=variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant20-variant24-variant27-variant29-variant33-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:215,0,276:2,8,2,8
chr2	85273149	.	C	T	183.35	PASS	AC=1;AF=0.556;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant12-variant15-variant22-variant23-variant28-variant32-variant39	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:436,0,540:13,6,11,4
chr2	85276866	.	T	C	113.43	PASS	AC=1;AF=0.6;AN=2;DP=37;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant23-variant28-variant32	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:64:280,0,64:0,2,0,7
chr2	85360828	.	GGGC	G	926.79	PASS	AC=1;AF=0.667;AN=2;DP=1559;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,43:80:99:1635,0,1421:26,11,33,10
chr2	85532205	.	C	G	320.14	PASS	AC=2;AF=0.779;AN=2;DP=1834;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1828,174,0:0,0,33,25
chr2	85533227	.	G	A	274.57	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant15-variant22-variant29	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:328,0,473:12,5,9,1
chr2	85537312	.	G	A	2167.39	PASS	AC=1;AF=0.703;AN=2;DP=8491;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:117,131:248:99:3281,0,2721:63,54,74,57
chr2	85545949	.	CCT	C	1400.27	PASS	AC=1;AF=0.529;AN=2;DP=1197;MQ=60;set=variant3-variant6-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant22-variant29-variant32-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:1266,0,1083:12,14,11,21
chr2	85546052	.	A	G	257.37	PASS	AC=1;AF=0.716;AN=2;DP=928;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:369,0,289:6,7,3,11
chr2	85546192	.	C	T	192.67	PASS	AC=1;AF=0.743;AN=2;DP=843;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:291,0,265:6,7,7,6
chr2	85546615	.	C	T	199.36	PASS	AC=1;AF=0.731;AN=2;DP=759;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:177,0,277:6,4,4,4
chr2	85546932	.	A	C	444.94	PASS	AC=1;AF=0.731;AN=2;DP=2314;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,31:80:99:683,0,1192:27,22,15,16
chr2	85547429	.	G	T	325.48	PASS	AC=1;AF=0.75;AN=2;DP=870;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:207,0,440:7,8,5,5
chr2	85547963	.	C	T	314.9	PASS	AC=1;AF=0.744;AN=2;DP=1973;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:594,0,816:14,17,12,15
chr2	85548068	.	TA	T	358.05	PASS	AC=1;AF=0.731;AN=2;DP=1210;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:522,0,698:12,13,10,9
chr2	85548639	.	A	G	2749.58	PASS	AC=1;AF=0.738;AN=2;DP=6110;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,74:176:99:1868,0,2775:64,38,48,26
chr2	85549527	.	T	C	795.81	PASS	AC=1;AF=0.716;AN=2;DP=2068;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:730,0,695:13,15,13,13
chr2	85549547	.	C	T	702.63	PASS	AC=1;AF=0.716;AN=2;DP=1920;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:603,0,678:14,12,12,10
chr2	85549868	.	A	G	997.74	PASS	AC=1;AF=0.738;AN=2;DP=3295;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1268,0,1360:22,34,24,30
chr2	85551696	.	T	G	56.56	PASS	AC=1;AF=0.716;AN=2;DP=709;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:271,0,509:11,8,8,2
chr2	85551752	.	GAA	GA,G,GAAA	321.26	PASS	AC=1,0,0;AF=0.357,0.071,0.071;AN=2;DP=241;MQ=60;set=variant-variant5-filterInvariant15-filterInvariant28-filterInvariant36-variant40-variant44	GT:DP:GQ:SB	0/1:41:99:16,14,6,5
chr2	85551779	.	G	A	456.03	PASS	AC=1;AF=0.716;AN=2;DP=1519;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,19:57:99:494,0,1027:20,18,13,6
chr2	85552186	.	C	A	831.48	PASS	AC=1;AF=0.744;AN=2;DP=2603;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,40:91:99:967,0,1355:23,28,21,19
chr2	85553784	.	C	T	3077.57	PASS	AC=1;AF=0.731;AN=2;DP=8130;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,139:277:99:3573,0,3531:77,61,70,69
chr2	85554080	.	G	A	3068.47	PASS	AC=1;AF=0.722;AN=2;DP=10489;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:207,182:389:99:4953,0,5424:114,93,100,82
chr2	85555262	.	T	G	2114.62	PASS	AC=1;AF=0.763;AN=2;DP=8467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,123:239:99:4637,0,6436:67,49,66,57
chr2	85555277	.	G	A	2464.08	PASS	AC=1;AF=0.756;AN=2;DP=9184;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,126:265:99:4677,0,6776:74,65,67,59
chr2	85555478	.	C	T	1603.56	PASS	AC=1;AF=0.744;AN=2;DP=4872;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,73:151:99:1963,0,2012:34,44,30,43
chr2	85569379	.	C	T	4556.81	PASS	AC=1;AF=0.5;AN=2;DP=1676;MQ=60;set=variant15-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:190,193:383:99:4585,0,5012:80,110,84,109
chr2	85570186	.	G	A	66.86	PASS	AC=1;AF=0.5;AN=2;DP=1303;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-filterInvariant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,9:48:99:174,0,1096:26,13,7,2
chr2	85570273	.	G	A	1221.01	PASS	AC=1;AF=0.5;AN=2;DP=573;FractionInformativeReads=1;set=variant15-variant29-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:77,54:131:99:1249,0,1932:44,33,32,22
chr2	85570942	.	G	C	609.64	PASS	AC=2;AF=0.667;AN=2;DP=2569;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,84:86:99:2869,208,0:1,1,24,60
chr2	85571710	.	A	G	1275.37	PASS	AC=2;AF=0.849;AN=2;DP=4406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3887,347,0:0,0,85,31
chr2	85573033	.	G	A	2141.17	PASS	AC=1;AF=0.788;AN=2;DP=7891;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,127:285:99:3018,0,3875:68,90,55,72
chr2	85573403	.	C	A	75	PASS	AC=1;AF=0.788;AN=2;DP=398;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,12:13:7:356,0,7:0,1,4,8
chr2	85576451	.	GTC	G	568.61	PASS	AC=1;AF=0.575;AN=2;DP=489;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant19-variant21-variant22-variant30-variant32-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:624,0,635:15,1,11,5
chr2	85596739	.	A	G	668.21	PASS	AC=1;AF=0.5;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant15-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:696,0,765:15,13,18,7
chr2	85598056	.	T	C	506.47	PASS	AC=1;AF=0.5;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant15-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:535,0,682:18,2,14,2
chr2	85604838	.	T	C	269.46	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant15-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:298,0,432:5,11,4,8
chr2	85616758	.	T	C	1132.92	PASS	AC=1;AF=0.5;AN=2;DP=1017;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant14-variant15-variant21-variant22-variant26-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1186,0,1416:27,21,31,9
chr2	85617310	.	G	A	2697.68	PASS	AC=1;AF=0.5;AN=2;DP=242;FS=0.465;FractionInformativeReads=1;MQ=60;MQRankSum=-1.637;QD=11.15;ReadPosRankSum=1.311;SOR=0.728;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:126,116:242:99:2726,0,3091:63,63,59,57
chr2	85622059	.	T	C	2793	PASS	AC=2;AF=0.797;AN=2;DP=4680;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5213,533,0:0,0,80,98
chr2	85625222	.	T	G	1277.14	PASS	AC=1;AF=0.5;AN=2;DP=2016;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant14-variant15-variant21-variant22-variant23-variant26-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,56:124:99:1287,0,1525:30,38,23,33
chr2	85626479	.	G	C	1217.98	PASS	AC=1;AF=0.5;AN=2;DP=2642;MQ=60;set=variant-variant2-variant3-variant14-variant15-variant21-variant22-variant23-variant26-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,82:178:99:2049,0,2633:30,66,28,54
chr2	85646417	.	G	A	2433.53	PASS	AC=1;AF=0.595;AN=2;DP=1132;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant29-variant31-variant33-variant34-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:676,0,538:8,13,10,19
chr2	85649492	.	C	G	1604.32	PASS	AC=1;AF=0.5;AN=2;DP=599;MQ=60;set=variant15-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:63,62:125:99:1633,0,1729:42,21,37,25
chr2	85656788	.	C	A	821.06	PASS	AC=1;AF=0.605;AN=2;DP=868;MQ=60;set=variant-variant2-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant29-variant31-variant33-variant34-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:554,0,775:11,20,9,16
chr2	85658232	.	A	G	331.77	PASS	AC=1;AF=0.6;AN=2;DP=613;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:425,0,305:8,5,9,8
chr2	85658257	.	C	G	200.48	PASS	AC=2;AF=0.673;AN=2;DP=787;MQ=60;set=variant2-variant3-variant4-variant6-filterInvariant7-variant9-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1375,99,0:0,0,17,16
chr2	85660126	.	A	G	1589.81	PASS	AC=1;AF=0.703;AN=2;DP=1992;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:815,0,826:20,13,21,15
chr2	85662017	.	G	A	1897.14	PASS	AC=1;AF=0.703;AN=2;DP=2038;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:691,0,873:13,22,18,19
chr2	85662625	.	C	T	1636.11	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.03;QD=12.49;ReadPosRankSum=-2.545;SOR=0.754;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:1664,0,1887:28,40,25,38
chr2	85662650	.	A	G	2562.35	PASS	AC=2;AF=0.75;AN=2;DP=3121;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3963,316,0:0,0,53,52
chr2	85663520	.	A	C	1217.3	PASS	AC=1;AF=0.5;AN=2;DP=476;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant20-variant25-variant37-variant39	GT:AD:DP:GQ:PL:SB	0/1:54,48:102:99:1246,0,1339:31,23,26,22
chr2	85766545	.	C	T	5241.07	PASS	AC=1;AF=0.529;AN=2;DP=2920;MQ=60;set=variant-variant3-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,98:209:99:2524,0,3162:35,76,33,65
chr2	85766840	.	C	G	1010.43	PASS	AC=1;AF=0.5;AN=2;DP=226;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:61,64:125:99:1533,0,1573:32,29,33,31
chr2	85769246	.	G	A	6428.72	PASS	AC=2;AF=1;AN=2;DP=8187;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,228:229:99:6787,676,0:0,1,115,113
chr2	85769711	.	C	G	1396.12	PASS	AC=2;AF=0.629;AN=2;DP=1792;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2135,213,0:0,0,40,31
chr2	85769975	.	A	G	2209.73	PASS	AC=1;AF=0.529;AN=2;DP=848;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:775,0,751:19,13,18,12
chr2	85776276	.	T	G	1920.5	PASS	AC=1;AF=0.5;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:107,105:212:99:2467,0,2688:46,61,46,59
chr2	85776490	.	C	CTTTA	322.35	PASS	AC=2;AF=0.638;AN=2;DP=522;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:755,51,0:0,0,3,14
chr2	85777270	.	G	A	1398.11	PASS	AC=1;AF=0.529;AN=2;DP=1018;MQ=60;set=variant-variant3-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:1141,0,738:13,19,15,27
chr2	85778263	.	C	G	810.66	PASS	AC=1;AF=0.5;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:71,47:118:99:1099,0,1829:28,43,21,26
chr2	85778400	.	T	C	93.21	PASS	AC=1;AF=0.5;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:742,0,543:6,11,11,13
chr2	85779965	.	A	C	537.29	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:40,41:81:99:1002,0,1038:23,17,25,16
chr2	85780131	.	G	A	2651.06	PASS	AC=1;AF=0.529;AN=2;DP=2597;MQ=60;set=variant-variant3-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,87:194:99:1890,0,2745:57,50,49,38
chr2	85780536	.	C	T	1243.64	PASS	AC=1;AF=0.591;AN=2;DP=1723;MQ=60;set=variant-variant3-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant33-variant35-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,47:88:99:1183,0,1172:15,26,21,26
chr2	85781318	.	T	G	1817.45	PASS	AC=2;AF=1;AN=2;DP=4199;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2224,215,0:0,0,37,35
chr2	85783205	.	A	C	306.52	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:304,0,382:9,1,8,1
chr2	85786074	.	G	A	924.3	PASS	AC=1;AF=0.5;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:74,58:132:99:1358,0,1934:35,39,28,30
chr2	85788175	.	T	A	1350.44	PASS	AC=2;AF=0.621;AN=2;DP=1320;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1584,150,0:0,0,17,33
chr2	85788401	.	GAC	GC,G	177.38	PASS	AC=1,0;AF=0.531,0.031;AN=2;DP=255;MQ=60;set=variant-variant4-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant27-variant30-variant43	GT:DP:GQ:SB	0/1:13:99:4,0,5,4
chr2	85788738	.	C	A	1875.72	PASS	AC=1;AF=0.536;AN=2;DP=831;MQ=60;set=variant-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant33-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,33:81:99:717,0,1085:21,27,16,17
chr2	85804540	.	A	G	994.18	PASS	AC=2;AF=1;AN=2;DP=1490;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1428,129,0:0,0,29,14
chr2	85806068	.	T	C	2912.96	PASS	AC=2;AF=0.593;AN=2;DP=2407;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3129,297,0:0,0,59,40
chr2	85806266	.	C	T	2371.05	PASS	AC=1;AF=0.529;AN=2;DP=1732;MQ=60;set=variant-variant3-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant33-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:1352,0,1571:29,37,20,34
chr2	85806332	.	G	C	506.28	PASS	AC=1;AF=0.5;AN=2;DP=105;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:898,0,812:10,20,10,23
chr2	85807081	.	AT	A	36.81	PASS	AC=1;AF=0.5;AN=2;DP=145;MQ=60;set=filterInvariant8-variant15-filterInvariant17-filterInvariant29-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:186,0,124:0,7,0,9
chr2	85807082	.	T	A	200.94	PASS	AC=1;AF=0.567;AN=2;DP=644;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:124,0,186:0,9,0,7
chr2	85807083	.	T	A	157.97	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=0.552;MQ=60;MQRankSum=0.529;QD=5.45;ReadPosRankSum=0.529;SOR=0.941;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:186,0,124:0,7,0,9
chr2	85808594	.	CA	C	454.43	PASS	AC=1;AF=0.56;AN=2;DP=371;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant25-variant28-variant29-variant30-variant33-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:57:153,0,57:4,1,7,1
chr2	85808737	.	A	G	5043.82	PASS	AC=2;AF=0.596;AN=2;DP=3745;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant33-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4384,416,0:0,0,84,55
chr2	85808871	.	C	T	4074.96	PASS	AC=2;AF=0.596;AN=2;DP=2672;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant33-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,139:140:99:4068,373,0:0,1,56,83
chr2	85808982	.	T	C	1681.18	PASS	AC=2;AF=0.596;AN=2;DP=1736;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant33-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2242,206,0:0,0,34,35
chr2	85809216	.	T	C	174.13	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant15	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:53:366,0,53:0,2,1,10
chr2	85818797	.	G	A	135.53	PASS	AC=1;AF=0.5;AN=2;DP=655;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant29-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:691,0,652:19,6,16,7
chr2	85818886	.	C	T	324.85	PASS	AC=1;AF=0.5;AN=2;DP=1955;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant29-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,62:152:99:1503,0,2226:52,38,35,27
chr2	85820027	.	A	G	91.72	PASS	AC=1;AF=0.5;AN=2;DP=279;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant19-variant21-variant28-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:222,0,227:6,1,6,0
chr2	85820301	.	A	T	772.38	PASS	AC=1;AF=0.5;AN=2;DP=579;MQ=60;set=variant-variant12-variant15-variant19-variant21-variant33	GT:AD:DP:GQ:PL:SB	0/1:58,45:103:99:1190,0,1399:31,27,27,18
chr2	85823167	.	TG	T	204.54	PASS	AC=1;AF=0.58;AN=2;DP=808;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:506,0,558:7,13,4,14
chr2	85824039	.	G	A	1109.37	PASS	AC=1;AF=0.5;AN=2;DP=1016;set=variant-variant12-variant15-variant19-variant21-variant29-variant33	GT:AD:DP:GQ:PL:SB	0/1:98,73:171:99:1647,0,2566:46,52,37,36
chr2	85824084	.	G	C	1082.27	PASS	AC=1;AF=0.62;AN=2;DP=3203;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,77:166:99:1797,0,2371:40,49,37,40
chr2	85826132	.	G	A	629.86	PASS	AC=1;AF=0.62;AN=2;DP=1504;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,31:77:99:815,0,1384:34,12,19,12
chr2	85826721	.	G	A	1668.27	PASS	AC=1;AF=0.5;AN=2;DP=2828;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,98:187:99:2378,0,2041:43,46,47,51
chr2	85828014	.	T	G	832.87	PASS	AC=1;AF=0.62;AN=2;DP=1738;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:850,0,829:21,14,21,10
chr2	85833906	.	CT	C,CTT	102.32	PASS	AC=1,0;AF=0.45,0.05;AN=2;DP=10567;set=filterInvariant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:202:99:57,108,12,25
chr2	85834641	.	T	G	416.23	PASS	AC=1;AF=0.5;AN=2;DP=993;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:765,0,879:18,18,17,14
chr2	85848747	.	CT	C	679.49	PASS	AC=2;AF=0.732;AN=2;DP=1578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,40:44:34:871,34,0:1,3,12,28
chr2	85866577	.	CT	C,CTT	33.07	PASS	AC=1,0;AF=0.393,0.107;AN=2;DP=428;set=variant-variant3-variant4-variant14-filterInvariant15-filterInvariant18-filterInvariant20-variant23-variant29-filterInvariant31-filterInvariant33-variant38-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:28:99:5,15,2,6
chr2	85876224	.	CT	C	979.56	PASS	AC=1;AF=0.62;AN=2;DP=1497;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,21:54:99:624,0,1067:13,20,11,10
chr2	85886667	.	G	C	725.17	PASS	AC=1;AF=0.62;AN=2;DP=1739;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1041,0,1167:25,24,22,23
chr2	85890758	.	T	C	1029.97	PASS	AC=1;AF=0.5;AN=2;DP=2036;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,64:128:99:1487,0,1526:37,27,35,29
chr2	85890771	.	T	G	3719.85	PASS	AC=2;AF=0.943;AN=2;DP=5064;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:5015,408,0:0,0,74,62
chr2	85893616	.	CTGTG	CTG,CTGTGTG,C	341.26	PASS	AC=0,1,0;AF=0.446,0.203,0.041;AN=2;DP=1086;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:37:99:20,6,10,1
chr2	85893741	.	G	A	4955.47	PASS	AC=1;AF=0.657;AN=2;DP=6524;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,94:182:99:2309,0,2148:46,42,48,46
chr2	85894308	.	G	T	505.25	PASS	AC=2;AF=0.7;AN=2;DP=1977;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2878,280,0:0,0,38,56
chr2	85895338	.	T	G	1205.1	PASS	AC=1;AF=0.654;AN=2;DP=2345;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,55:101:99:1476,0,1079:23,23,24,31
chr2	85895704	.	C	T	316.63	PASS	AC=1;AF=0.533;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant10-variant11-variant14-variant15-variant16-variant28-variant30-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:220,0,189:5,3,5,5
chr2	85921992	.	T	C	1938.38	PASS	AC=1;AF=0.718;AN=2;DP=3428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1249,0,1032:25,20,26,22
chr2	85981289	.	CCT	C	296.03	PASS	AC=1;AF=0.5;AN=2;DP=967;MQ=60;set=variant10-variant13-filterInvariant15-variant18-filterInvariant23-variant26-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:116,11:127:92:92,0,5233:75,41,0,11
chr2	86010678	.	T	C	80.74	PASS	AC=1;AF=0.7;AN=2;DP=241;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant19-variant21-variant23-variant24-variant27-variant28-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:19:123,0,19:1,0,3,2
chr2	86010847	.	G	T	327.3	PASS	AC=1;AF=0.658;AN=2;DP=289;MQ=60;set=variant3-variant4-variant6-variant11-variant12-variant14-variant15-variant22-variant24-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,19:26:99:453,0,158:5,2,10,9
chr2	86014345	.	G	A	3474.55	PASS	AC=1;AF=0.591;AN=2;DP=5334;MQ=60;set=variant3-variant4-variant6-variant7-variant11-variant13-variant14-variant15-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,121:269:99:2994,0,3683:69,79,57,64
chr2	86014780	.	A	G	413.93	PASS	AC=1;AF=0.595;AN=2;DP=1240;MQ=60;set=variant3-variant4-variant6-variant7-variant11-variant13-variant14-variant15-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,28:79:99:650,0,1283:25,26,13,15
chr2	86015096	.	G	A	938.94	PASS	AC=1;AF=0.63;AN=2;DP=1308;MQ=60;set=variant3-variant4-variant6-variant7-variant11-variant13-variant14-variant15-variant18-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,49:79:99:1186,0,792:10,20,24,25
chr2	86071393	.	G	C	322.27	PASS	AC=1;AF=0.583;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant25-variant27-variant29-variant32-variant34-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:417,0,161:5,2,11,6
chr2	86075582	.	C	T	685.41	PASS	AC=1;AF=0.524;AN=2;DP=1482;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant11-variant12-variant14-variant15-variant21-variant22-variant23-variant25-variant27-variant29-variant32-variant35-variant36-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:899,0,1121:14,28,16,24
chr2	86078478	.	C	T	540.28	PASS	AC=1;AF=0.5;AN=2;DP=820;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant12-variant14-variant15-variant21-variant22-variant27-variant32-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:720,0,920:22,14,16,16
chr2	86088311	.	T	C	842.89	PASS	AC=1;AF=0.5;AN=2;DP=964;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant12-variant14-variant15-variant21-variant22-variant27-variant32-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,37:77:99:960,0,1124:28,12,24,13
chr2	86094686	.	C	T	1224.82	PASS	AC=1;AF=0.5;AN=2;DP=1426;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant12-variant14-variant15-variant21-variant22-variant27-variant32-variant35-variant36-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,60:117:99:1572,0,1326:34,23,40,20
chr2	86247670	.	CAAA	CAA,CA,CAAAA,CAAAAA,C	174.41	PASS	AC=1,0,0,0,0;AF=0.205,0.136,0.114,0.023,0.023;AN=2;DP=1240;set=variant3-variant4-variant10-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant22-variant23-variant25-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42	GT:DP:GQ:SB	0/1:39:99:12,6,18,3
chr2	86248309	.	T	C	824.71	PASS	AC=2;AF=0.788;AN=2;DP=3041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2805,255,0:0,0,37,48
chr2	86253451	.	T	C	2252.52	PASS	AC=1;AF=0.5;AN=2;DP=260;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:73,87:160:99:2281,0,1739:43,30,58,29
chr2	86253581	.	T	C	2392.18	PASS	AC=2;AF=0.788;AN=2;DP=8986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,286:286:99:8605,856,0:0,0,138,148
chr2	86254268	.	G	A	649.64	PASS	AC=2;AF=0.697;AN=2;DP=2549;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2682,239,0:0,0,28,52
chr2	86255615	.	T	TGACTCGGTGCTGGACC	751.88	PASS	AC=1;AF=0.5;AN=2;DP=129;MQ=60;set=variant12-variant15	GT:AD:DP:GQ:PL:SB	0/1:48,28:76:99:1488,0,6524:35,13,26,2
chr2	86258784	.	T	G	634.94	PASS	AC=2;AF=0.697;AN=2;DP=2479;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2665,249,0:0,0,27,56
chr2	86259443	.	C	T	710.99	PASS	AC=2;AF=0.737;AN=2;DP=4647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:3875,428,0:0,0,72,72
chr2	86272191	.	G	A	103.64	PASS	AC=2;AF=0.697;AN=2;DP=558;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:818,72,0:0,0,18,6
chr2	86272643	.	A	G	778.18	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:806,0,715:17,11,17,12
chr2	86275985	.	A	G	1583.6	PASS	AC=2;AF=0.697;AN=2;DP=3604;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4312,411,0:0,0,88,49
chr2	86292656	.	C	T	1225.83	PASS	AC=2;AF=0.872;AN=2;DP=4099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2214,207,0:0,0,33,36
chr2	86302103	.	A	G	516.52	PASS	AC=2;AF=0.895;AN=2;DP=1647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1292,120,0:0,0,23,17
chr2	86304932	.	GCGCACACACACACACACA	GCACACACACACACA,GCA,GCACACA,GCACACACA,GCACA,GCACACACACACA,G	479.58	PASS	AC=0,0,1,0,1,0,0;AF=0.033,0.25,0.483,0.067,0.033,0.033,0.017;AN=2;DP=312;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:DP:GQ:SB	5/3:20:81:0,0,16,4
chr2	86305123	.	T	C	922.23	PASS	AC=2;AF=0.965;AN=2;DP=2829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3003,267,0:0,0,55,34
chr2	86310110	.	C	T	496.99	PASS	AC=2;AF=0.837;AN=2;DP=2446;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2119,206,0:0,0,42,27
chr2	86315741	.	C	T	458.88	PASS	AC=2;AF=0.837;AN=2;DP=1721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1352,131,0:0,0,28,16
chr2	86317037	.	G	C	974.38	PASS	AC=2;AF=0.884;AN=2;DP=3841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2773,266,0:0,0,51,38
chr2	86332809	.	G	A	588.15	PASS	AC=2;AF=0.837;AN=2;DP=4656;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4435,409,0:0,0,97,40
chr2	86334199	.	G	A	626.29	PASS	AC=2;AF=0.849;AN=2;DP=2089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2236,204,0:0,0,47,21
chr2	86335249	.	TAA	TA,T,TAAA	90.17	PASS	AC=1,0,0;AF=0.46,0.02,0.02;AN=2;DP=493;set=variant2-filterInvariant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-filterInvariant17-variant18-variant20-variant24-variant26-variant30-variant31-variant32-filterInvariant34-variant37-variant38-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:19:99:8,1,10,0
chr2	86343476	.	C	A	274.3	PASS	AC=2;AF=0.837;AN=2;DP=685;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:628,57,0:0,0,13,6
chr2	86343494	.	G	A	356.85	PASS	AC=2;AF=0.849;AN=2;DP=915;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,22:23:27:689,27,0:1,0,14,8
chr2	86344367	.	T	C	398.09	PASS	AC=2;AF=0.965;AN=2;DP=1151;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1041,96,0:0,0,9,23
chr2	86346308	.	G	A	408.76	PASS	AC=2;AF=0.93;AN=2;DP=1021;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1329,105,0:0,0,7,28
chr2	86352010	.	G	T	489.51	PASS	AC=2;AF=0.895;AN=2;DP=1237;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1450,117,0:0,0,28,11
chr2	86352785	.	G	A	1441.57	PASS	AC=2;AF=0.837;AN=2;DP=2521;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2034,193,0:0,0,36,29
chr2	86352825	.	C	T	1750.48	PASS	AC=2;AF=0.837;AN=2;DP=3323;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2903,291,0:0,0,54,43
chr2	86359405	.	G	T	1497.29	PASS	AC=2;AF=0.837;AN=2;DP=5091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3778,379,0:0,0,83,44
chr2	86359745	.	GTTTT	GTT,GT,GTTT,G	255.36	PASS	AC=0,1,0,0;AF=0.25,0.092,0.289,0.026;AN=2;DP=1230;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant38-filterInvariant39-filterInvariant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:31:78:3,8,1,19
chr2	86362204	.	C	T	615.79	PASS	AC=2;AF=0.849;AN=2;DP=1866;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1554,137,0:0,0,10,36
chr2	86363074	.	A	G	2005.87	PASS	AC=2;AF=0.837;AN=2;DP=6233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:5781,575,0:0,0,103,89
chr2	86363855	.	G	C	274.38	PASS	AC=2;AF=0.942;AN=2;DP=851;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1003,87,0:0,0,8,21
chr2	86364706	.	TG	T	1767.65	PASS	AC=2;AF=0.965;AN=2;DP=4271;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3853,325,0:0,0,64,44
chr2	86365607	.	T	C	1263.95	PASS	AC=2;AF=0.694;AN=2;DP=3478;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,116:118:99:3640,305,0:1,1,48,68
chr2	86365713	.	G	A	1085.27	PASS	AC=2;AF=0.826;AN=2;DP=3949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2616,225,0:0,0,43,32
chr2	86365799	.	C	CA	280.64	PASS	AC=1;AF=0.512;AN=2;DP=4968;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,94:113:99:1987,0,116:11,8,53,41
chr2	86365884	.	G	A	1750.1	PASS	AC=2;AF=0.826;AN=2;DP=5236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4116,385,0:0,0,64,65
chr2	86367350	.	CAAA	CA,CAA,C	2350.58	PASS	AC=0,1,0;AF=0.337,0.244,0.058;AN=2;DP=7722;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:176:99:37,41,59,39
chr2	86367741	.	C	G	5086.53	PASS	AC=2;AF=0.895;AN=2;DP=16070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,454:454:99:14062,1359,0:0,0,195,259
chr2	86368027	.	C	A	52.8	PASS	AC=1;AF=0.5;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.804;QD=26.4;ReadPosRankSum=0.804;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:1,1:2:10:81,0,10:0,1,0,1
chr2	86368042	.	A	C,AAAC,AAAAC,AAC	511.6	PASS	AC=0,2,0,0;AF=0.36,0.56,0.02,0.06;AN=2;DP=211;FS=0;set=variant11-variant5-variant13-variant7-variant14-variant15-variant16-variant20-variant25-variant26-variant8-variant29-variant31-variant34-variant35-variant36-variant38-variant22-variant9-variant39-variant40-variant4-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:7:5:0,1,4,2
chr2	86369180	.	AG	A	1582.07	PASS	AC=2;AF=0.895;AN=2;DP=4744;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4056,388,0:0,0,66,63
chr2	86371012	.	T	C	2389.48	PASS	AC=2;AF=0.694;AN=2;DP=5344;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5617,515,0:0,0,116,56
chr2	86371883	.	T	C	967.36	PASS	AC=2;AF=0.694;AN=2;DP=2795;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3161,308,0:0,0,40,63
chr2	86373498	.	A	AT	86.6	PASS	AC=2;AF=0.9;AN=2;DP=37;FS=0;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=variant15-variant16-variant22-variant25-variant27	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:124,15,0:0,0,1,4
chr2	86385668	.	T	C	409.57	PASS	AC=2;AF=0.694;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:90:1337,90,0:0,0,22,6
chr2	86385682	.	TC	T	522.46	PASS	AC=2;AF=0.694;AN=2;DP=755;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1560,108,0:0,0,29,7
chr2	86385886	.	A	G	1061.49	PASS	AC=2;AF=0.977;AN=2;DP=3581;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3666,351,0:0,0,45,72
chr2	86398074	.	A	G	348.94	PASS	AC=2;AF=0.694;AN=2;DP=1199;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1761,180,0:0,0,25,35
chr2	86398291	.	G	A	123.37	PASS	AC=2;AF=0.732;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:364,27,0:0,0,7,2
chr2	86406438	.	A	G	1428.52	PASS	AC=2;AF=0.694;AN=2;DP=2491;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:4119,332,0:0,0,96,15
chr2	86406889	.	G	A	400.08	PASS	AC=2;AF=0.694;AN=2;DP=1179;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1373,120,0:0,0,10,30
chr2	86408385	.	A	G	905.59	PASS	AC=2;AF=0.694;AN=2;DP=2364;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2836,285,0:0,0,54,41
chr2	86419932	.	C	G	453.78	PASS	AC=2;AF=0.694;AN=2;DP=1266;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1730,138,0:0,0,38,8
chr2	86420255	.	G	A	168.97	PASS	AC=2;AF=0.7;AN=2;DP=426;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:574,45,0:0,0,3,12
chr2	86422073	.	G	C	1613.39	PASS	AC=2;AF=0.694;AN=2;DP=4262;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:4915,515,0:0,0,85,87
chr2	86422416	.	T	C	2001.89	PASS	AC=2;AF=0.706;AN=2;DP=5503;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:7246,488,0:0,0,95,67
chr2	86422421	.	T	G	2182.72	PASS	AC=2;AF=0.694;AN=2;DP=5027;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:7284,494,0:0,0,95,68
chr2	86422660	.	C	T	1522.71	PASS	AC=2;AF=0.694;AN=2;DP=4211;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:5017,494,0:0,0,79,87
chr2	86422793	.	G	C	2035.22	PASS	AC=2;AF=0.706;AN=2;DP=3191;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3936,268,0:0,0,38,51
chr2	86422796	.	A	AGCT	2068.17	PASS	AC=2;AF=0.706;AN=2;DP=3112;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3931,268,0:0,0,37,49
chr2	86422816	.	T	G	976.12	PASS	AC=2;AF=0.706;AN=2;DP=2719;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2477,228,0:0,0,29,47
chr2	86422945	.	G	A	73.78	PASS	AC=2;AF=0.707;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:717,54,0:0,0,3,15
chr2	86433240	.	C	T	631.29	PASS	AC=2;AF=0.7;AN=2;DP=1101;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1405,114,0:0,0,34,4
chr2	86437551	.	T	G	340.07	PASS	AC=2;AF=0.953;AN=2;DP=1205;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:813,78,0:0,0,18,8
chr2	86437898	.	C	T	2257.66	PASS	AC=2;AF=0.953;AN=2;DP=5077;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5229,477,0:0,0,104,55
chr2	86438146	.	A	G	1415.67	PASS	AC=2;AF=0.732;AN=2;DP=5188;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4948,458,0:0,0,62,91
chr2	86440963	.	G	A	1555.11	PASS	AC=2;AF=0.953;AN=2;DP=3693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:4257,359,0:0,0,36,84
chr2	86442146	.	CTTTT	CTTT,CT,C,CTT,CTTTTTTTTTTTTTTTTTT,CTTTTTTT	752.75	PASS	AC=0,1,0,0,0,0;AF=0.097,0.226,0.032,0.177,0.016,0.016;AN=2;DP=3419;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/2:79:99:21,21,4,33
chr2	86683642	.	A	G	280.08	PASS	AC=1;AF=0.756;AN=2;DP=1521;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:487,0,504:13,11,8,12
chr2	86691250	.	G	A	1304.11	PASS	AC=1;AF=0.756;AN=2;DP=4256;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,52:118:99:1195,0,1502:31,35,22,30
chr2	86705565	.	T	C	563.97	PASS	AC=1;AF=0.648;AN=2;DP=920;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:838,0,753:12,13,14,12
chr2	86707504	.	T	C	437.79	PASS	AC=1;AF=0.768;AN=2;DP=3368;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,53:98:99:1349,0,979:20,25,19,34
chr2	86732524	.	C	T	754	PASS	AC=1;AF=0.648;AN=2;DP=1796;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,43:80:99:1153,0,964:16,21,22,21
chr2	86732576	.	A	G	1058.38	PASS	AC=1;AF=0.648;AN=2;DP=2230;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,53:93:99:1566,0,1077:24,16,33,20
chr2	86737649	.	G	A	1039.24	PASS	AC=1;AF=0.653;AN=2;DP=3774;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,94:155:99:2412,0,1455:22,39,41,53
chr2	86756209	.	C	G	658.38	PASS	AC=1;AF=0.756;AN=2;DP=2039;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1054,0,1090:29,11,29,9
chr2	86756280	.	G	A	1300.95	PASS	AC=1;AF=0.648;AN=2;DP=3546;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,85:172:99:2101,0,2196:55,32,54,31
chr2	86830514	.	T	C	1643.38	PASS	AC=1;AF=0.654;AN=2;DP=2933;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,63:120:99:1686,0,1445:33,24,44,19
chr2	86850022	.	T	C	808.4	PASS	AC=2;AF=0.764;AN=2;DP=4875;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,128:129:99:3909,344,0:0,1,58,70
chr2	86947783	.	C	T	4365.68	PASS	AC=2;AF=0.793;AN=2;DP=6719;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:5781,608,0:0,0,127,77
chr2	86978895	.	G	T	196.77	PASS	AC=2;AF=0.771;AN=2;DP=232;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,5,0
chr2	86979093	.	G	A	1488.09	PASS	AC=2;AF=0.75;AN=2;DP=2422;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2021,209,0:0,0,34,36
chr2	86992337	.	T	TAA	3273.38	PASS	AC=2;AF=0.744;AN=2;DP=2772;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3854,264,0:0,0,31,56
chr2	86998659	.	CTT	CT,CTTT,C	758.29	PASS	AC=2,0,0;AF=0.488,0.024,0.012;AN=2;DP=2027;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:52:10:4,3,30,15
chr2	87002229	.	C	T	1665.54	PASS	AC=2;AF=0.744;AN=2;DP=3339;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3103,302,0:0,0,43,58
chr2	87002706	.	G	A	529.46	PASS	AC=2;AF=0.75;AN=2;DP=1151;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1174,114,0:0,0,16,22
chr2	87003028	.	C	T	1890.7	PASS	AC=2;AF=0.744;AN=2;DP=2549;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2641,222,0:0,0,44,30
chr2	87003197	.	C	G	13854.3	PASS	AC=2;AF=0.744;AN=2;DP=15131;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,398:398:99:12075,1192,0:0,0,224,174
chr2	87015633	.	T	TGA	1265.36	PASS	AC=2;AF=0.81;AN=2;DP=2230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2490,171,0:0,0,38,17
chr2	87018452	.	A	G	1124.19	PASS	AC=2;AF=0.756;AN=2;DP=2503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2606,216,0:0,0,34,38
chr2	87048702	.	T	G	526.1	PASS	AC=2;AF=0.932;AN=2;DP=1550;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1472,135,0:0,0,30,15
chr2	87069379	.	G	A	567.37	PASS	AC=2;AF=0.716;AN=2;DP=898;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:989,101,0:0,0,13,21
chr2	87069431	.	C	T	481.22	PASS	AC=2;AF=0.716;AN=2;DP=978;set=filterInvariant-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant10-variant11-filterInvariant12-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant21-filterInvariant22-variant23-filterInvariant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-filterInvariant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:758,78,0:0,0,12,14
chr2	87073743	.	A	G	140.45	PASS	AC=2;AF=0.716;AN=2;DP=1246;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:959,93,0:0,0,21,10
chr2	87074048	.	GTATT	GTT,G	160.29	PASS	AC=2,0;AF=0.5,0.5;AN=2;DP=17;FS=0;set=variant6-variant15-variant17-variant41	GT:DP:GQ:SB	1/1:4:12:0,0,1,3
chr2	87074052	.	T	C	169.25	PASS	AC=2;AF=1;AN=2;DP=9;FS=0;FractionInformativeReads=1;set=variant6-variant15	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:151,12,0:0,0,1,3
chr2	87085598	.	T	C	135.83	PASS	AC=1;AF=0.675;AN=2;DP=659;set=variant-filterInvariant7-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant25-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,13:53:99:328,0,1326:8,32,0,13
chr2	87092865	.	C	T	33	PASS	AC=1;AF=0.714;AN=2;DP=105;FractionInformativeReads=1;set=variant-variant7-variant8-variant10-variant12-variant15-variant16-filterInvariant17-filterInvariant28-variant29-variant30-filterInvariant31-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:115,0,112:2,3,3,3
chr2	87169316	.	T	G	323.36	PASS	AC=1;AF=0.571;AN=2;DP=829;FractionInformativeReads=1;set=variant-filterInvariant5-variant7-variant8-variant10-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant23-variant27-variant29-variant35-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:720,0,828:20,9,17,11
chr2	87169471	.	C	G	627.15	PASS	AC=1;AF=0.536;AN=2;DP=987;set=variant-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant27-variant29-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,31:97:99:1014,0,2757:27,39,10,21
chr2	87169493	.	C	G	610.37	PASS	AC=1;AF=0.5;AN=2;DP=825;set=variant-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant19-variant23-variant27-variant29-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,25:71:99:960,0,2269:16,30,8,17
chr2	87276811	.	T	C	153.73	DRAGENHardSNP	AC=1;AF=0.556;AN=2;DP=759;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:500,0,420:12,9,13,11
chr2	87279964	.	G	A	79.15	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=17;FS=5.653;FractionInformativeReads=1;MQ=25.85;MQRankSum=-0.955;QD=4.66;ReadPosRankSum=-0.352;SOR=0.088;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:107,0,278:10,1,4,2
chr2	87303060	.	C	G	1356.13	PASS	AC=1;AF=0.556;AN=2;DP=4094;set=variant-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant29-variant31-variant35-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,92:185:99:2069,0,2239:53,40,53,39
chr2	87345696	.	A	C	88.9	PASS	AC=1;AF=0.522;AN=2;DP=482;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:439,0,145:2,4,5,11
chr2	87355912	.	C	T	40.02	PASS	AC=1;AF=0.5;AN=2;DP=2086;set=filterInvariant-filterInvariant7-variant9-filterInvariant11-filterInvariant13-filterInvariant15-filterInvariant18-variant19-variant22-variant27-variant28-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-filterInvariant37-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:115,21:136:99:132,0,3024:61,54,12,9
chr2	87356024	.	C	A	57.33	PASS	AC=1;AF=0.5;AN=2;DP=1995;FractionInformativeReads=1;set=filterInvariant-variant2-filterInvariant3-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant13-variant14-filterInvariant15-variant16-variant18-variant19-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,12:72:99:127,0,1665:21,39,4,8
chr2	87359129	.	G	A	43.27	PASS	AC=1;AF=0.8;AN=2;DP=49;FS=0;FractionInformativeReads=1;set=variant-filterInvariant5-variant8-filterInvariant11-variant13-variant15-variant17-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:123,0,194:5,1,5,0
chr2	87371260	.	T	C	455.82	PASS	AC=1;AF=0.545;AN=2;DP=1510;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:284,0,539:9,13,4,9
chr2	87371339	.	C	T	153.94	PASS	AC=1;AF=0.58;AN=2;DP=253;FS=0;FractionInformativeReads=1;set=variant-variant2-filterInvariant5-variant7-variant8-variant13-variant14-filterInvariant15-variant17-filterInvariant18-filterInvariant19-variant21-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:63:63,0,201:0,7,0,3
chr2	87376944	.	G	A	358.27	PASS	AC=1;AF=0.569;AN=2;DP=1558;set=variant-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:786,0,773:19,17,18,17
chr2	87616737	.	T	C	57.73	DRAGENHardSNP	AC=1;AF=0.767;AN=2;DP=473;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:42:331,0,42:2,2,5,10
chr2	88272919	.	C	A	1240.27	PASS	AC=1;AF=0.5;AN=2;DP=375;FractionInformativeReads=1;set=variant14-variant15-variant38	GT:AD:DP:GQ:PL:SB	0/1:121,68:189:99:1311,0,2793:54,67,30,38
chr2	88289368	.	G	A	423.77	PASS	AC=1;AF=0.932;AN=2;DP=771;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:145,0,201:3,5,2,3
chr2	88328208	.	G	A	109.41	PASS	AC=1;AF=0.756;AN=2;DP=589;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:350,0,413:0,11,0,10
chr2	88384084	.	C	T	427.15	PASS	AC=1;AF=0.563;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant8-variant9-variant13-variant15-variant17-variant26-variant27-variant29-variant30-variant33-variant37-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:943,0,981:16,20,18,21
chr2	88387557	.	A	C	817.84	PASS	AC=1;AF=0.6;AN=2;DP=1340;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant12-variant15-variant16-variant18-variant29-variant37-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,92:172:99:2232,0,1858:36,44,44,48
chr2	88395989	.	G	C	1175.33	PASS	AC=1;AF=0.545;AN=2;DP=990;MQ=60;set=variant-variant5-variant9-variant12-variant15-variant16-variant18-variant29-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,46:106:99:1116,0,1618:31,29,27,19
chr2	88396080	.	A	C	1123.95	PASS	AC=2;AF=0.667;AN=2;DP=2992;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4205,386,0:0,0,61,68
chr2	88396120	.	G	A	1620.26	PASS	AC=2;AF=0.667;AN=2;DP=2978;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:5778,400,0:0,0,61,67
chr2	88396123	.	C	G	1617.25	PASS	AC=2;AF=0.667;AN=2;DP=2990;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:5778,400,0:0,0,63,69
chr2	88396174	.	T	C	1281.55	PASS	AC=2;AF=0.667;AN=2;DP=2909;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3609,368,0:0,0,57,66
chr2	88402511	.	C	A	393.09	PASS	AC=1;AF=0.545;AN=2;DP=313;MQ=60;set=variant-variant5-variant9-variant12-variant15-variant16-variant18-variant29-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:472,0,685:18,4,12,8
chr2	88402560	.	G	A	798.35	PASS	AC=1;AF=0.545;AN=2;DP=580;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant12-variant15-variant16-variant18-variant29-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:658,0,1052:25,14,15,10
chr2	88406057	.	C	T	2735.86	PASS	AC=1;AF=0.5;AN=2;DP=405;FractionInformativeReads=1;MQ=60;set=variant15-variant31	GT:AD:DP:GQ:PL:SB	0/1:79,113:192:99:2764,0,1946:31,48,56,57
chr2	88406108	.	C	T	1430.7	PASS	AC=1;AF=0.545;AN=2;DP=1343;MQ=60;set=variant-variant5-variant12-variant15-variant16-variant18-variant19-variant29-variant37-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,62:152:99:1432,0,2357:37,53,23,39
chr2	88406257	.	A	G	75.05	PASS	AC=1;AF=0.594;AN=2;DP=264;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:325,0,256:0,7,4,9
chr2	88407959	.	T	C	985	PASS	AC=1;AF=0.563;AN=2;DP=1798;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,65:134:99:1544,0,1599:31,38,28,37
chr2	88408172	.	A	G	265.56	PASS	AC=2;AF=0.756;AN=2;DP=1158;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1149,120,0:0,0,16,24
chr2	88409717	.	T	TGA	766	PASS	AC=1;AF=0.5;AN=2;DP=270;set=variant5-variant15-variant19-variant29-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:405,0,695:11,6,9,4
chr2	88409719	.	A	AGAGT,AGTGT,AGAGTGTGTGT,AGAGTGTGTGTGT,AGAGTGTGT,AGT,AGTGTGT,AGAGTGTGTGTGTGT	887.92	PASS	AC=0,0,0,0,1,0,0,0;AF=0.131,0.214,0.298,0.095,0.071,0.012,0.024,0.012;AN=2;DP=1293;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:35:99:10,6,12,7
chr2	88410102	.	C	G	560.39	PASS	AC=2;AF=0.756;AN=2;DP=2456;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2237,207,0:0,0,28,41
chr2	88410168	.	A	G	726.61	PASS	AC=2;AF=0.756;AN=2;DP=1905;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1816,168,0:0,0,23,33
chr2	88410731	.	A	G	2004.28	PASS	AC=2;AF=0.756;AN=2;DP=4981;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3817,348,0:0,0,67,49
chr2	88410994	.	A	G	893.33	PASS	AC=1;AF=0.559;AN=2;DP=1048;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:1143,0,861:15,21,10,24
chr2	88411305	.	C	T	630.09	PASS	AC=1;AF=0.652;AN=2;DP=1621;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:596,0,755:13,12,13,7
chr2	88411605	.	A	T	744.8	PASS	AC=1;AF=0.559;AN=2;DP=1428;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,56:110:99:1404,0,1301:27,27,30,26
chr2	88411793	.	C	A	1098.72	PASS	AC=2;AF=0.756;AN=2;DP=2625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2760,249,0:0,0,32,51
chr2	88411904	.	C	T	876.96	PASS	AC=1;AF=0.559;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,35:85:99:965,0,1393:29,21,23,12
chr2	88412039	.	G	A	1727.39	PASS	AC=1;AF=0.559;AN=2;DP=2672;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,94:169:99:2370,0,1890:40,35,49,45
chr2	88412339	.	G	A	722.75	PASS	AC=1;AF=0.559;AN=2;DP=1152;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:883,0,867:14,21,16,19
chr2	88422412	.	G	A	1114.26	PASS	AC=1;AF=0.553;AN=2;DP=1929;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant29-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,44:110:99:994,0,1882:41,25,26,18
chr2	88422758	.	G	A	2887.45	PASS	AC=1;AF=0.553;AN=2;DP=4132;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant29-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:153,136:289:99:3229,0,3930:71,82,66,70
chr2	88423374	.	T	C	998.06	PASS	AC=2;AF=1;AN=2;DP=1575;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1445,132,0:0,0,27,17
chr2	88423621	.	C	T	1188.92	PASS	AC=2;AF=0.989;AN=2;DP=2123;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1838,170,0:0,0,30,27
chr2	88423816	.	A	G	1114.12	PASS	AC=1;AF=0.548;AN=2;DP=2001;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant28-variant29-variant34-variant36-variant37-variant38-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,72:125:99:1954,0,1349:28,25,37,35
chr2	88469770	.	G	C	807.73	PASS	AC=2;AF=0.854;AN=2;DP=2589;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1907,183,0:0,0,28,33
chr2	88469863	.	G	C	2362.3	PASS	AC=2;AF=0.849;AN=2;DP=4174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3590,286,0:0,0,39,56
chr2	88469891	.	G	T	492.82	PASS	AC=1;AF=0.542;AN=2;DP=889;MQ=60;set=variant5-variant10-variant13-variant15-variant21-variant23-variant26-variant31-variant35-variant36-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,38:91:99:884,0,1299:25,28,14,24
chr2	88469933	.	TCGCGCCCCGCGCCC	T,TCGCGCCCCGCGCCCCGCGCCCCGCGCCCCGCGCCC,TCGCGCCCCGCGCCCCGCGCCC,TCGCGCCC	738.45	PASS	AC=1,0,1,0;AF=0.571,0.012,0.214,0.024;AN=2;DP=3109;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:41:99:0,0,14,27
chr2	88471894	.	G	T	437.53	PASS	AC=1;AF=0.583;AN=2;DP=756;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant21-variant23-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:641,0,847:12,16,10,17
chr2	88472141	.	G	A	399.71	PASS	AC=1;AF=0.588;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant21-variant23-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:365,0,377:7,9,8,4
chr2	88472249	.	G	C	447.71	PASS	AC=1;AF=0.625;AN=2;DP=1206;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:645,0,796:17,12,10,13
chr2	88472280	.	C	T	1217.1	PASS	AC=2;AF=0.943;AN=2;DP=1918;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1745,159,0:0,0,33,20
chr2	88472791	.	G	A	1459.83	PASS	AC=2;AF=0.943;AN=2;DP=2222;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1747,158,0:0,0,29,24
chr2	88472925	.	A	G	752.09	PASS	AC=1;AF=0.583;AN=2;DP=1456;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant21-variant23-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:968,0,1284:25,31,18,24
chr2	88474370	.	A	G	3157.66	PASS	AC=2;AF=0.943;AN=2;DP=4675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4163,393,0:0,0,54,77
chr2	88485392	.	G	C	4455.81	PASS	AC=2;AF=0.943;AN=2;DP=4697;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4864,413,0:0,0,48,90
chr2	88485968	.	A	AC	1166.76	PASS	AC=2;AF=0.807;AN=2;DP=2364;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1891,177,0:0,0,28,30
chr2	88748390	.	A	T	2826.13	PASS	AC=2;AF=0.636;AN=2;DP=3748;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4177,431,0:0,0,65,79
chr2	88751751	.	A	AG	893.91	PASS	AC=2;AF=1;AN=2;DP=1353;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1230,99,0:0,0,8,25
chr2	88870632	.	A	T	649.19	PASS	AC=2;AF=0.756;AN=2;DP=904;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1430,123,0:0,0,12,29
chr2	88874891	.	C	A	3492.08	PASS	AC=2;AF=0.75;AN=2;DP=5412;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4067,391,0:0,0,58,73
chr2	88882942	.	T	A	1247.28	PASS	AC=2;AF=0.583;AN=2;DP=2208;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3253,320,0:0,0,66,41
chr2	88895123	.	T	C	3091.6	PASS	AC=2;AF=0.756;AN=2;DP=4515;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3633,366,0:0,0,57,65
chr2	88895351	.	T	C	2065.26	PASS	AC=2;AF=0.75;AN=2;DP=2779;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2203,213,0:0,0,36,35
chr2	89050126	.	T	G	912.3	PASS	AC=2;AF=0.589;AN=2;DP=1802;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3399,268,0:0,0,68,21
chr2	89082471	.	T	C	220.23	PASS	AC=1;AF=0.5;AN=2;DP=4845;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,44:143:99:1509,0,14593:43,56,21,23
chr2	89082495	.	T	G,A	256.23	PASS	AC=1,0;AF=0.444,0.056;AN=2;DP=3623;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-filterInvariant19-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:120:99:33,46,19,22
chr2	89082503	.	C	T	271.26	PASS	AC=1;AF=0.5;AN=2;DP=3937;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,39:114:99:1490,0,14977:32,43,17,22
chr2	89082520	.	G	A	295.34	PASS	AC=1;AF=0.5;AN=2;DP=2367;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,30:90:99:1151,0,14431:23,37,12,18
chr2	89082536	.	T	G	154.47	PASS	AC=1;AF=0.5;AN=2;DP=1672;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,15:61:99:611,0,12522:17,29,5,10
chr2	89082549	.	G	C	163.5	PASS	AC=1;AF=0.5;AN=2;DP=1299;FractionInformativeReads=1;set=variant-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-filterInvariant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,12:54:99:416,0,11649:14,28,3,9
chr2	89082552	.	C	T	118.5	PASS	AC=1;AF=0.5;AN=2;DP=1223;FractionInformativeReads=1;set=variant-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,6:45:99:380,0,11078:12,27,1,5
chr2	89082554	.	C	T	121.51	PASS	AC=1;AF=0.5;AN=2;DP=1163;FractionInformativeReads=1;set=variant-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-filterInvariant34-variant35-variant36-variant39-filterInvariant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,4:42:99:132,0,10886:12,26,0,4
chr2	89084327	.	G	C	1472.47	PASS	AC=2;AF=0.784;AN=2;DP=1612;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1626,144,0:0,0,24,24
chr2	89100619	.	C	T	136.89	PASS	AC=1;AF=0.5;AN=2;DP=4656;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,32:147:99:681,0,3088:64,51,31,1
chr2	89100657	.	G	A	547.36	PASS	AC=1;AF=0.5;AN=2;DP=6848;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:121,65:186:99:1606,0,3023:63,58,51,14
chr2	89100697	.	C	G	1539.39	PASS	AC=1;AF=0.5;AN=2;DP=7393;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:98,101:199:99:4108,0,3811:46,52,60,41
chr2	89100701	.	A	G	1539.39	PASS	AC=1;AF=0.5;AN=2;DP=7409;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:97,105:202:99:4136,0,3765:44,53,61,44
chr2	89100725	.	G	A	1701.57	PASS	AC=1;AF=0.5;AN=2;DP=7008;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,109:186:99:4180,0,2887:33,44,56,53
chr2	89100759	.	A	C	1610.33	PASS	AC=1;AF=0.5;AN=2;DP=5631;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,98:150:99:3879,0,1797:15,37,40,58
chr2	89100764	.	A	G	1545.53	PASS	AC=1;AF=0.5;AN=2;DP=5229;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:46,97:143:99:3863,0,1772:13,33,37,60
chr2	89100805	.	A	G	735.26	PASS	AC=1;AF=0.5;AN=2;DP=2839;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,61:87:99:2441,0,887:4,22,12,49
chr2	89100806	.	A	G	148.21	PASS	AC=1;AF=0.5;AN=2;DP=2024;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-filterInvariant11-variant12-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant23-filterInvariant25-variant26-variant28-filterInvariant29-filterInvariant30-filterInvariant32-variant33-variant34-variant35-variant38-variant39-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,17:85:99:328,0,2288:13,55,3,14
chr2	89100808	.	C	A	735.26	PASS	AC=1;AF=0.5;AN=2;DP=2673;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,58:82:99:2413,0,863:4,20,11,47
chr2	89100816	.	A	G	544.42	PASS	AC=1;AF=0.5;AN=2;DP=2302;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,49:71:99:2071,0,812:3,19,8,41
chr2	89100865	.	T	C	103.93	PASS	AC=1;AF=0.5;AN=2;DP=725;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:311,0,184:1,5,1,9
chr2	89103705	.	A	G	486.15	PASS	AC=1;AF=0.528;AN=2;DP=230;set=variant-variant5-variant7-variant13-variant15-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant32-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:103,0,117:3,0,3,0
chr2	89103755	.	C	A	1504.99	PASS	AC=1;AF=0.5;AN=2;DP=1562;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:546,0,546:9,5,7,5
chr2	89103761	.	C	G	1697.62	PASS	AC=1;AF=0.5;AN=2;DP=1694;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:551,0,777:10,8,8,6
chr2	89103765	.	A	C	869.7	PASS	AC=1;AF=0.5;AN=2;DP=1811;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:595,0,771:12,9,10,7
chr2	89103806	.	AT	A	278.08	PASS	AC=1;AF=0.5;AN=2;DP=1832;set=variant2-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant19-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-filterInvariant36-variant37-variant38-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,8:58:97:97,0,1494:26,24,4,4
chr2	89103862	.	T	C	811.44	PASS	AC=1;AF=0.5;AN=2;DP=2599;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:741,0,894:18,16,10,18
chr2	89103894	.	C	T	408.29	PASS	AC=1;AF=0.5;AN=2;DP=2179;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,21:68:99:718,0,1760:27,20,8,13
chr2	89103904	.	C	T	637.52	PASS	AC=1;AF=0.557;AN=2;DP=1961;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,16:63:99:528,0,1855:28,19,5,11
chr2	89104252	.	A	ATT	405.78	PASS	AC=1;AF=0.5;AN=2;DP=1403;set=variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant32-variant33-variant36-variant38-variant39-variant40-variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:43,8:51:99:195,0,1779:28,15,8,0
chr2	89104259	.	A	C	910.14	PASS	AC=1;AF=0.5;AN=2;DP=2465;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,18:63:99:591,0,1796:29,16,16,2
chr2	89104266	.	G	A	1021.56	PASS	AC=1;AF=0.5;AN=2;DP=2793;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,14:68:99:288,0,2193:36,18,13,1
chr2	89104333	.	C	T	1050.5	PASS	AC=1;AF=0.5;AN=2;DP=4724;set=variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-filterInvariant11-variant15-variant16-variant17-variant19-filterInvariant20-variant21-filterInvariant23-variant25-variant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,35:140:99:511,0,3845:52,53,22,13
chr2	89104334	.	T	G,A	2489.17	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=5893;set=Intersection	GT:DP:GQ:SB	0/1:123:99:24,27,38,34
chr2	89104347	.	G	T	657.97	PASS	AC=1;AF=0.5;AN=2;DP=4810;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant9-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant30-variant32-variant33-variant36-filterInvariant37-variant39-variant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:114,17:131:99:215,0,4228:54,60,8,9
chr2	89104362	.	C	T	1042.42	PASS	AC=1;AF=0.5;AN=2;DP=4380;set=variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-filterInvariant11-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant25-variant26-variant27-variant28-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,39:143:99:557,0,3555:47,57,21,18
chr2	89104364	.	A	G	2873.31	PASS	AC=1;AF=0.5;AN=2;DP=5824;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:46,97:143:99:3150,0,843:21,25,46,51
chr2	89105008	.	T	C	895.02	PASS	AC=1;AF=0.5;AN=2;DP=4304;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,34:94:99:1183,0,2329:20,40,14,20
chr2	89105019	.	A	C	901.79	PASS	AC=1;AF=0.5;AN=2;DP=3857;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,33:83:99:1186,0,2112:16,34,14,19
chr2	89105025	.	A	G	290.68	PASS	AC=1;AF=0.5;AN=2;DP=490;set=variant2-variant15-filterInvariant27-filterInvariant28-filterInvariant34-filterInvariant37	GT:AD:DP:GQ:PL:SB	0/1:60,15:75:99:182,0,2461:18,42,8,7
chr2	89105045	.	C	T	437.45	PASS	AC=1;AF=0.5;AN=2;DP=1063;set=variant2-variant4-variant5-variant8-variant9-variant15-variant17-variant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant34-variant35-filterInvariant37-variant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:34,16:50:99:497,0,1180:7,27,6,10
chr2	89157129	.	G	A	97485.2	PASS	AC=2;AF=0.966;AN=2;DP=129362;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:173,3639:3812:99:112241,6093,0:76,97,2057,1582
chr2	89157195	.	T	TCGTTTGATCTCCA,TAGTTTGATCTCCA,TTGATCTCCA,TTGATCTCCACCTTGGTA	1589.87	PASS	AC=0,1,0,0;AF=0.1,0.1,0.1,0.2;AN=2;DP=8563;set=filterInvariant11-variant15-filterInvariant21-variant23-variant41	GT:DP:GQ:SB	0/2:1456:99:875,319,16,246
chr2	89157198	.	T	TCCACCTTGGTACCAGG,TCTCCACCTTGGTACCAGGGCC,TTGGTACCA	19763.3	PASS	AC=0,0,1;AF=0.083,0.333,0.083;AN=2;DP=2710;set=variant4-variant7-variant13-filterInvariant15-filterInvariant22-variant32	GT:DP:GQ:SB	0/3:341:99:91,105,0,145
chr2	89185449	.	G	C	84395.1	PASS	AC=2;AF=0.92;AN=2;DP=108047;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:156,2489:2645:99:75583,1395,0:93,63,1323,1166
chr2	89185477	.	C	G	150662	PASS	AC=1;AF=0.784;AN=2;DP=137390;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:176,3290:3466:99:137827,0,785:102,74,1769,1521
chr2	89185492	.	C	T	160266	PASS	AC=2;AF=0.83;AN=2;DP=153774;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:189,3747:3936:64:148760,64,0:105,84,1992,1755
chr2	89185519	.	G	C	128388	PASS	AC=2;AF=0.966;AN=2;DP=173121;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:192,4324:4516:99:124721,6028,0:98,94,2257,2067
chr2	89185552	.	C	T	121320	PASS	AC=2;AF=0.966;AN=2;DP=173346;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:189,4410:4599:99:125596,6159,0:101,88,2207,2203
chr2	89196621	.	A	T	276.35	PASS	AC=1;AF=0.5;AN=2;DP=122;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant19-variant20-variant21-variant26-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:366,0,296:7,1,10,0
chr2	89309689	.	G	T	5530.36	PASS	AC=1;AF=0.5;AN=2;DP=469;FS=0;FractionInformativeReads=1;MQ=59.78;MQRankSum=-1.932;QD=11.79;ReadPosRankSum=-0.242;SOR=0.67;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:243,226:469:99:5559,0,6352:124,119,114,112
chr2	89384859	.	T	C	517.15	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=32;FS=1.67;FractionInformativeReads=1;MQ=28.22;MQRankSum=0.833;QD=16.16;ReadPosRankSum=0.264;SOR=1.179;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:10,22:32:99:545,0,184:3,7,5,17
chr2	89512775	.	T	G	150.37	PASS	AC=2;AF=0.775;AN=2;DP=1584;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2014,171,0:0,0,45,12
chr2	89513365	.	A	G	480.81	PASS	AC=1;AF=0.5;AN=2;DP=416;FractionInformativeReads=1;set=variant2-variant3-variant15-variant29-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,27:72:99:656,0,1157:14,31,8,19
chr2	89999076	.	T	C	470.82	PASS	AC=2;AF=0.955;AN=2;DP=1611;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1388,129,0:0,0,6,37
chr2	90007670	.	G	A	1144.47	PASS	AC=2;AF=0.77;AN=2;DP=1614;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1457,141,0:0,0,30,17
chr2	90008208	.	T	G	2296.05	PASS	AC=1;AF=0.769;AN=2;DP=5131;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,80:174:99:2031,0,2364:33,61,27,53
chr2	90008287	.	A	C	319.66	PASS	AC=2;AF=0.729;AN=2;DP=1279;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1712,150,0:0,0,11,39
chr2	90108416	.	G	A	921.29	PASS	AC=2;AF=0.932;AN=2;DP=3946;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2847,272,0:0,0,51,40
chr2	90108778	.	G	T	1912.82	PASS	AC=2;AF=0.854;AN=2;DP=4841;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,135:136:99:4206,398,0:0,1,88,47
chr2	90121675	.	T	C	1146.02	PASS	AC=2;AF=0.898;AN=2;DP=2780;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2329,186,0:0,0,53,9
chr2	90458538	.	T	C	1200.33	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12807;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:193,170:363:99:3689,0,4271:134,59,121,49
chr2	90458594	.	T	C	4017.35	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=28619;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:426,337:763:99:6481,0,8625:246,180,196,141
chr2	90458606	.	C	T	826.64	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=19841;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:741,102:843:99:107,0,16393:417,324,55,47
chr2	90458745	.	T	C	1030.78	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=7326;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:124,78:202:99:1662,0,3113:20,104,17,61
chr2	91678903	.	A	G	691.11	PASS	AC=1;AF=0.5;AN=2;DP=10717;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:238,46:284:99:609,0,5559:157,81,23,23
chr2	91679044	.	A	G	4264.55	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=30008;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:469,400:869:99:7365,0,9199:216,253,188,212
chr2	91766685	.	G	T	1005.02	PASS	AC=1;AF=0.5;AN=2;DP=7478;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,57:197:99:1833,0,5786:52,88,19,38
chr2	91766686	.	A	G	1005.02	PASS	AC=1;AF=0.5;AN=2;DP=7372;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,54:191:99:1833,0,5786:52,85,17,37
chr2	91766729	.	C	CAG	2478.6	PASS	AC=1;AF=0.5;AN=2;DP=4330;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,71:101:99:2849,0,1076:11,19,29,42
chr2	91767199	.	A	C	296.47	PASS	AC=1;AF=0.5;AN=2;DP=1317;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:364,0,865:21,3,11,0
chr2	91767507	.	T	A	906.27	PASS	AC=1;AF=0.5;AN=2;DP=7675;set=variant-filterInvariant3-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-variant21-variant22-variant23-variant25-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:238,35:273:99:287,0,6807:88,150,13,22
chr2	91809227	.	A	G	612.8	PASS	AC=1;AF=0.5;AN=2;DP=8401;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:156,67:223:99:1427,0,4168:92,64,38,29
chr2	91809324	.	C	T	1120.08	PASS	AC=1;AF=0.5;AN=2;DP=11677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:184,136:320:99:3097,0,4737:85,99,58,78
chr2	91809385	.	C	G	827.56	PASS	AC=1;AF=0.5;AN=2;DP=9198;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:152,103:255:99:3371,0,5736:66,86,47,56
chr2	91809404	.	G	C	723.9	PASS	AC=1;AF=0.5;AN=2;DP=7729;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:130,76:206:99:2816,0,5130:53,77,28,48
chr2	91809456	.	T	G	74.82	PASS	AC=1;AF=0.5;AN=2;DP=3669;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,31:121:99:932,0,3328:31,59,14,17
chr2	91809468	.	C	CTAA	190.02	PASS	AC=1;AF=0.5;AN=2;DP=3248;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,36:96:99:1310,0,2585:15,45,14,22
chr2	91809470	.	G	A	199.23	PASS	AC=1;AF=0.5;AN=2;DP=3125;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,34:94:99:1331,0,2411:15,45,13,21
chr2	91809472	.	G	GTGACTAACAA	277.27	PASS	AC=1;AF=0.5;AN=2;DP=3017;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,33:89:99:1373,0,2408:15,41,12,21
chr2	91893801	.	A	C	162.68	PASS	AC=1;AF=0.534;AN=2;DP=310;set=filterInvariant-filterInvariant4-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:159,0,165:6,1,6,1
chr2	91924782	.	C	A	147.31	PASS	AC=1;AF=0.512;AN=2;DP=685;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,16:20:81:516,0,81:3,1,13,3
chr2	91924804	.	T	C	170.86	PASS	AC=1;AF=0.5;AN=2;DP=1065;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,24:31:99:756,0,176:6,1,19,5
chr2	91925022	.	C	A	1690.56	PASS	AC=1;AF=0.5;AN=2;DP=10048;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:87,167:254:99:4107,0,1970:52,35,90,77
chr2	91925139	.	C	G	737.32	PASS	AC=1;AF=0.5;AN=2;DP=10046;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:114,106:220:99:2737,0,2825:48,66,31,75
chr2	91925151	.	C	T	2717.45	PASS	AC=1;AF=0.5;AN=2;DP=9169;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,116:193:99:3107,0,1782:32,45,35,81
chr2	91926926	.	C	T	101.87	PASS	AC=1;AF=0.5;AN=2;DP=562;FractionInformativeReads=1;set=variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:205,0,319:8,2,6,2
chr2	91927088	.	G	A	337.99	PASS	AC=1;AF=0.5;AN=2;DP=4763;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,34:100:99:762,0,1759:39,27,19,15
chr2	91927130	.	C	G	676.27	PASS	AC=1;AF=0.5;AN=2;DP=6507;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,43:136:99:1515,0,3773:54,39,25,18
chr2	91927131	.	C	G	676.27	PASS	AC=1;AF=0.5;AN=2;DP=6507;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,41:134:99:1515,0,3773:54,39,23,18
chr2	91927133	.	GT	G	667.24	PASS	AC=1;AF=0.5;AN=2;DP=6573;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,40:131:99:1472,0,3779:52,39,21,19
chr2	91927214	.	T	C	349.26	PASS	AC=1;AF=0.5;AN=2;DP=7559;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,31:190:99:373,0,4404:86,73,11,20
chr2	91927230	.	C	T	472.03	PASS	AC=1;AF=0.5;AN=2;DP=7250;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,25:194:99:530,0,6991:91,78,8,17
chr2	91927231	.	A	G	472.03	PASS	AC=1;AF=0.5;AN=2;DP=7206;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,25:194:99:530,0,6991:91,78,8,17
chr2	91927348	.	G	A	1040.88	PASS	AC=1;AF=0.5;AN=2;DP=630;set=variant2-variant3-variant15-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,68:142:99:1634,0,2065:29,45,33,35
chr2	91933207	.	T	C	44.51	PASS	AC=1;AF=0.5;AN=2;DP=6764;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-filterInvariant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant36-variant37-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,27:173:99:306,0,3897:56,90,7,20
chr2	91935981	.	C	T	117.79	PASS	AC=1;AF=0.5;AN=2;DP=3416;set=variant-filterInvariant3-variant4-variant5-variant8-filterInvariant9-filterInvariant11-filterInvariant12-variant13-filterInvariant15-variant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant23-variant24-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,10:110:75:75,0,2842:72,28,9,1
chr2	91936054	.	T	C	629.64	PASS	AC=1;AF=0.5;AN=2;DP=10104;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:231,30:261:99:455,0,6479:145,86,30,0
chr2	91936121	.	A	G	1923.88	PASS	AC=1;AF=0.5;AN=2;DP=18647;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:319,109:428:99:2012,0,7846:165,154,65,44
chr2	91936138	.	G	A	3734.32	PASS	AC=1;AF=0.5;AN=2;DP=19839;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:317,128:445:99:4404,0,12704:158,159,70,58
chr2	91936147	.	G	A	3792.82	PASS	AC=1;AF=0.5;AN=2;DP=20368;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:322,144:466:99:4806,0,12783:159,163,78,66
chr2	91937559	.	A	C	39.08	PASS	AC=1;AF=0.5;AN=2;DP=702;FractionInformativeReads=1;set=filterInvariant-variant8-filterInvariant9-variant15-variant16-variant17-filterInvariant28-variant33-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,7:48:99:141,0,2014:30,11,5,2
chr2	91937662	.	A	G	757.2	PASS	AC=1;AF=0.5;AN=2;DP=5106;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,27:115:99:390,0,2148:45,43,15,12
chr2	91937699	.	C	T	790.65	PASS	AC=1;AF=0.5;AN=2;DP=4742;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,25:108:99:363,0,2191:34,49,13,12
chr2	91937761	.	C	T	483.13	PASS	AC=1;AF=0.5;AN=2;DP=2361;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,14:62:99:224,0,1270:16,32,6,8
chr2	91937775	.	G	A	395.34	PASS	AC=1;AF=0.5;AN=2;DP=1891;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,10:47:99:157,0,1074:11,26,4,6
chr2	91940297	.	C	T	225.41	PASS	AC=1;AF=0.5;AN=2;DP=13062;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant8-filterInvariant9-filterInvariant10-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-variant24-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:356,30:386:98:98,0,15139:172,184,25,5
chr2	91940306	.	G	A	336.2	PASS	AC=1;AF=0.5;AN=2;DP=13486;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:343,29:372:99:135,0,14949:166,177,24,5
chr2	91944151	.	C	T	78.82	PASS	AC=1;AF=0.5;AN=2;DP=3365;set=variant-variant3-variant4-filterInvariant5-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant23-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant32-variant34-filterInvariant35-filterInvariant36-variant37-variant39-filterInvariant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,10:115:99:157,0,5661:40,65,8,2
chr2	91944161	.	G	A	103.55	PASS	AC=1;AF=0.5;AN=2;DP=3159;FractionInformativeReads=1;set=variant-variant3-variant4-filterInvariant5-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant23-filterInvariant25-variant26-filterInvariant27-variant28-variant29-variant30-variant32-variant34-filterInvariant35-filterInvariant36-variant37-variant39-filterInvariant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,13:107:99:206,0,5385:35,59,9,4
chr2	91955313	.	G	A	2265.41	PASS	AC=1;AF=0.5;AN=2;DP=15384;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:242,100:342:99:1803,0,6361:111,131,44,56
chr2	91955375	.	G	A	473.19	PASS	AC=1;AF=0.5;AN=2;DP=4673;set=filterInvariant4-variant8-variant11-variant13-filterInvariant14-variant15-variant16-variant18-variant21-variant24-filterInvariant26-variant27-variant28-variant30-filterInvariant33-variant34-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:153,42:195:99:865,0,4358:54,99,9,33
chr2	91955404	.	T	C	852.14	PASS	AC=1;AF=0.5;AN=2;DP=6036;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,20:131:99:460,0,3239:32,79,0,20
chr2	91960776	.	AG	A	307.04	PASS	AC=1;AF=0.5;AN=2;DP=376;set=variant4-variant10-variant12-variant13-variant15-variant30-variant31-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:306,0,329:9,7,8,6
chr2	92047432	.	G	C	172.69	PASS	AC=1;AF=0.5;AN=2;DP=574;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,5:23:99:156,0,1469:10,8,3,2
chr2	92047438	.	T	C	172.69	PASS	AC=1;AF=0.5;AN=2;DP=606;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:99:159,0,1447:9,8,3,2
chr2	92047442	.	C	T	172.69	PASS	AC=1;AF=0.5;AN=2;DP=610;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:177,0,1466:9,9,3,3
chr2	92075572	.	T	C	96.87	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1235;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:104,12:116:99:188,0,4380:51,53,6,6
chr2	92075584	.	G	A	141.84	PASS	AC=1;AF=0.5;AN=2;DP=1227;FractionInformativeReads=1;set=filterInvariant-filterInvariant11-filterInvariant15-filterInvariant17-filterInvariant21-filterInvariant22-variant24-filterInvariant25-filterInvariant30-filterInvariant35-filterInvariant36-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:106,12:118:99:185,0,4576:48,58,6,6
chr2	92075603	.	C	G	177.94	PASS	AC=1;AF=0.5;AN=2;DP=1472;FractionInformativeReads=1;set=variant-filterInvariant4-filterInvariant9-variant11-filterInvariant15-filterInvariant17-variant21-filterInvariant22-variant24-filterInvariant25-filterInvariant30-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,12:113:99:197,0,4408:45,56,6,6
chr2	92075610	.	G	T	594.56	PASS	AC=1;AF=0.5;AN=2;DP=1820;set=variant3-filterInvariant4-variant9-variant12-variant13-filterInvariant15-variant16-filterInvariant18-variant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant29-variant32-variant35-variant42	GT:AD:DP:GQ:PL:SB	0/1:98,10:108:99:125,0,4154:43,55,5,5
chr2	92075615	.	A	G	551.33	PASS	AC=1;AF=0.5;AN=2;DP=3785;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:86,20:106:99:581,0,3686:37,49,10,10
chr2	92075618	.	T	C	551.33	PASS	AC=1;AF=0.5;AN=2;DP=3699;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:85,20:105:99:581,0,3686:36,49,10,10
chr2	92075628	.	A	G	238.15	PASS	AC=1;AF=0.5;AN=2;DP=1590;FractionInformativeReads=1;set=variant-filterInvariant3-filterInvariant4-filterInvariant9-variant11-filterInvariant15-variant17-variant21-filterInvariant22-variant24-filterInvariant25-filterInvariant27-filterInvariant30-filterInvariant31-variant35-variant36-filterInvariant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,12:102:99:230,0,3926:37,53,6,6
chr2	92075629	.	C	A	80.8	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=565;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:92,8:100:99:99,0,4030:38,54,4,4
chr2	92075709	.	A	G	247.64	PASS	AC=1;AF=0.5;AN=2;DP=617;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:123,0,428:1,9,0,4
chr2	92129194	.	C	T	210.75	PASS	AC=1;AF=0.5;AN=2;DP=1102;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant13-filterInvariant14-variant15-variant16-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant27-filterInvariant30-variant31-variant32-filterInvariant33-variant34-variant35-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:99:134,0,509:10,9,1,5
chr2	95513817	.	G	T	31.1	PASS	AC=1;AF=0.5;AN=2;DP=3081;set=filterInvariant-filterInvariant2-variant3-filterInvariant4-variant5-variant7-variant8-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant27-variant29-variant30-variant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:70,11:81:99:215,0,3019:41,29,7,4
chr2	95513852	.	C	T	88.77	PASS	AC=1;AF=0.5;AN=2;DP=2951;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-variant8-filterInvariant11-variant12-variant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant27-variant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:81,8:89:90:90,0,2058:40,41,4,4
chr2	95513877	.	A	G	82.09	PASS	AC=1;AF=0.5;AN=2;DP=3077;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:76,8:84:98:98,0,3241:34,42,3,5
chr2	95513880	.	C	T	82.09	PASS	AC=1;AF=0.5;AN=2;DP=3052;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:76,8:84:99:101,0,3224:32,44,3,5
chr2	95513893	.	A	G	118.84	PASS	AC=1;AF=0.5;AN=2;DP=2817;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:68,8:76:99:164,0,2954:27,41,2,6
chr2	95537871	.	GC	GCC,GCCC,G	278.28	PASS	AC=0,0,1;AF=0.37,0.148,0.093;AN=2;DP=999;MQ=60;set=variant-variant4-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant22-variant23-filterInvariant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:30:99:3,9,2,16
chr2	95542346	.	A	G	803.98	PASS	AC=1;AF=0.5;AN=2;DP=16144;FractionInformativeReads=1;set=filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-variant11-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant37-variant39-variant40-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:462,33:495:99:133,0,21038:262,200,21,12
chr2	95542363	.	C	G	2409.55	PASS	AC=1;AF=0.5;AN=2;DP=19127;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:479,60:539:99:1074,0,21889:275,204,36,24
chr2	95542376	.	G	T	122.25	PASS	AC=1;AF=0.5;AN=2;DP=22357;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:524,83:607:99:1962,0,23266:292,232,47,36
chr2	95542377	.	C	T	125.26	PASS	AC=1;AF=0.5;AN=2;DP=22551;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:525,87:612:99:1968,0,23182:291,234,49,38
chr2	95542416	.	A	G	542.23	PASS	AC=1;AF=0.5;AN=2;DP=25128;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:571,103:674:99:2517,0,24323:309,262,51,52
chr2	95542419	.	G	A	539.23	PASS	AC=1;AF=0.5;AN=2;DP=25245;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:583,103:686:99:2505,0,24455:312,271,51,52
chr2	95542476	.	C	T	207.37	PASS	AC=1;AF=0.5;AN=2;DP=24395;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:571,76:647:99:917,0,15437:264,307,34,42
chr2	95542485	.	A	C	63.21	PASS	AC=1;AF=0.5;AN=2;DP=10307;set=filterInvariant-filterInvariant2-filterInvariant3-variant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant15-variant20-variant21-filterInvariant22-filterInvariant26-filterInvariant30-variant31-filterInvariant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:587,46:633:64:64,0,25494:270,317,20,26
chr2	95787810	.	T	G	911.64	PASS	AC=2;AF=1;AN=2;DP=1155;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1617,150,0:0,0,18,32
chr2	95830737	.	C	CA	2069.45	PASS	AC=2;AF=0.885;AN=2;DP=2398;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2520,243,0:0,0,50,29
chr2	95846158	.	T	C	288.47	PASS	AC=2;AF=0.885;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:657,51,0:0,0,3,14
chr2	95847040	.	TGCG	T	3818.12	PASS	AC=2;AF=0.989;AN=2;DP=5863;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6903,464,0:0,0,77,77
chr2	95848018	.	T	C	458.45	PASS	AC=2;AF=0.885;AN=2;DP=959;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:944,81,0:0,0,13,14
chr2	95848354	.	G	A	1783.06	PASS	AC=2;AF=0.885;AN=2;DP=2045;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1906,168,0:0,0,34,22
chr2	95849653	.	T	C	548.1	PASS	AC=2;AF=0.885;AN=2;DP=766;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1055,99,0:0,0,23,10
chr2	95942203	.	G	T	1966.87	PASS	AC=1;AF=0.5;AN=2;DP=358;MQ=60;set=variant2-variant15	GT:AD:DP:GQ:PL:SB	0/1:105,97:202:99:2527,0,2715:40,65,33,64
chr2	95944902	.	A	AC	806.43	PASS	AC=2;AF=1;AN=2;DP=1442;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1261,111,0:0,0,16,21
chr2	95945568	.	G	A	1280.23	PASS	AC=2;AF=0.875;AN=2;DP=2620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1884,188,0:0,0,39,24
chr2	95945830	.	G	T	1563.51	PASS	AC=2;AF=0.875;AN=2;DP=2480;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1968,195,0:0,0,30,35
chr2	95947085	.	A	G	5268.92	PASS	AC=2;AF=0.885;AN=2;DP=7995;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6417,635,0:0,0,91,121
chr2	95952177	.	C	G	1978.49	PASS	AC=2;AF=0.966;AN=2;DP=2944;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2067,215,0:0,0,36,36
chr2	95952641	.	A	G	1715.89	PASS	AC=1;AF=0.5;AN=2;DP=4612;set=variant-variant3-variant8-variant11-variant15-variant19-variant20-variant22-variant25-variant28-variant30-variant31-variant32-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:168,156:324:99:3867,0,4133:71,97,60,96
chr2	95955680	.	G	T	895.29	PASS	AC=1;AF=0.71;AN=2;DP=3713;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,80:175:99:1901,0,2410:41,54,33,47
chr2	95962959	.	G	C	181.56	PASS	AC=1;AF=0.783;AN=2;DP=400;set=variant2-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant26-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:4,16:20:99:625,0,109:3,1,15,1
chr2	95963242	.	C	G	1130.95	PASS	AC=2;AF=0.872;AN=2;DP=2414;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2276,219,0:0,0,68,5
chr2	95976299	.	T	G	33.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=287;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:97,38:135:62:62,0,1767:82,15,2,36
chr2	96012907	.	C	G	4012.71	PASS	AC=2;AF=0.859;AN=2;DP=7832;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,263:263:99:7852,787,0:0,0,103,160
chr2	96048862	.	C	T	41.28	PASS	AC=2;AF=0.683;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:650,60,0:0,0,12,8
chr2	96049917	.	TACAC	TAC,TACACACAC,TACACAC,TACACACACAC,TACACACACACACAC,TACACACACACAC,T	411.61	PASS	AC=0,0,1,0,0,0,0;AF=0.05,0.1,0.275,0.125,0.063,0.075,0.013;AN=2;DP=1366;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-filterInvariant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:31:99:9,11,6,5
chr2	96076409	.	C	T	183.53	PASS	AC=2;AF=0.989;AN=2;DP=699;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:512,39,0:0,0,5,8
chr2	96517471	.	A	G	223.1	PASS	AC=1;AF=0.5;AN=2;DP=2991;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,26:116:99:818,0,3731:54,36,19,7
chr2	96517474	.	G	A	223.1	PASS	AC=1;AF=0.5;AN=2;DP=3101;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,27:118:99:899,0,3767:55,36,20,7
chr2	96517484	.	T	G	369.98	PASS	AC=1;AF=0.5;AN=2;DP=3461;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,37:135:99:1334,0,4115:56,42,26,11
chr2	96517502	.	A	C	489.21	PASS	AC=1;AF=0.5;AN=2;DP=4201;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,52:155:99:1972,0,4282:53,50,33,19
chr2	96517518	.	A	G	531.08	PASS	AC=1;AF=0.5;AN=2;DP=4830;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,75:177:99:2465,0,3970:52,50,46,29
chr2	96517636	.	G	A	149.54	PASS	AC=1;AF=0.5;AN=2;DP=469;set=filterInvariant12-filterInvariant15-filterInvariant20-filterInvariant22-filterInvariant24-variant30	GT:AD:DP:GQ:PL:SB	0/1:81,9:90:84:84,0,3431:26,55,2,7
chr2	96517640	.	T	A	586.29	PASS	AC=1;AF=0.5;AN=2;DP=1974;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-filterInvariant15-variant18-variant19-variant20-variant22-filterInvariant23-filterInvariant24-variant25-variant27-variant30-filterInvariant32-filterInvariant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,7:87:87:87,0,3450:26,54,1,6
chr2	96517641	.	C	T	1110.84	PASS	AC=1;AF=0.5;AN=2;DP=3146;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1326,0,1467:8,30,17,32
chr2	96517642	.	A	G	398.93	PASS	AC=1;AF=0.5;AN=2;DP=3143;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,51:87:99:2061,0,1308:8,28,18,33
chr2	96517646	.	A	G	595.29	PASS	AC=1;AF=0.5;AN=2;DP=1807;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-filterInvariant15-variant18-variant19-variant20-variant22-filterInvariant23-filterInvariant24-variant25-variant27-variant30-filterInvariant32-filterInvariant36-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,7:82:59:59,0,3254:24,51,1,6
chr2	96517785	.	A	T	143.12	PASS	AC=1;AF=0.5;AN=2;DP=1335;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:602,0,406:9,5,14,7
chr2	96517822	.	TC	T	47.25	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=45.55;MQRankSum=-2.869;QD=0.91;ReadPosRankSum=2.627;SOR=0.619;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:45,7:52:85:85,0,1561:26,19,4,3
chr2	96517824	.	C	T	1756.23	PASS	AC=1;AF=0.5;AN=2;DP=2883;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:444,0,847:19,13,11,9
chr2	96517882	.	G	A	1029.45	PASS	AC=1;AF=0.5;AN=2;DP=5192;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-filterInvariant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant36-filterInvariant37-filterInvariant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,21:113:99:221,0,3085:45,47,10,11
chr2	96517885	.	G	A	1893.62	PASS	AC=1;AF=0.5;AN=2;DP=5733;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:46,64:110:99:2109,0,1069:24,22,29,35
chr2	96517893	.	T	C	995.89	PASS	AC=1;AF=0.5;AN=2;DP=5682;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,43:113:99:1420,0,2565:35,35,18,25
chr2	96517905	.	A	T	1043.23	PASS	AC=1;AF=0.5;AN=2;DP=5520;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,40:115:99:809,0,2096:36,39,16,24
chr2	96517957	.	ATT	A	859.2	PASS	AC=1;AF=0.5;AN=2;DP=3797;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,29:87:99:580,0,1976:23,35,13,16
chr2	96517960	.	T	A	2495.45	PASS	AC=1;AF=0.5;AN=2;DP=4421;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,28:87:99:626,0,1930:26,33,10,18
chr2	96517961	.	T	A,TAAA	2412.03	PASS	AC=1,0;AF=0.468,0.048;AN=2;DP=2995;set=variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:89:99:13,17,24,35
chr2	96518022	.	G	A	259.94	PASS	AC=1;AF=0.585;AN=2;DP=1099;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,7:30:99:155,0,627:7,16,0,7
chr2	96519558	.	ATCGT	A	745.36	PASS	AC=1;AF=0.5;AN=2;DP=2882;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,7:82:68:68,0,3432:38,37,3,4
chr2	96519587	.	T	C	759.93	PASS	AC=1;AF=0.5;AN=2;DP=2740;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,7:76:86:86,0,2988:31,38,3,4
chr2	96519588	.	G	A	759.93	PASS	AC=1;AF=0.5;AN=2;DP=2728;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,7:73:86:86,0,2988:30,36,3,4
chr2	96521138	.	T	C	3992.6	PASS	AC=1;AF=0.5;AN=2;DP=9226;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:115,101:216:99:2694,0,2908:66,49,70,31
chr2	96521220	.	G	A	971.32	PASS	AC=1;AF=0.5;AN=2;DP=19581;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:271,198:469:99:3861,0,6717:149,122,124,74
chr2	96521244	.	GTTTT	G	1994.87	PASS	AC=1;AF=0.5;AN=2;DP=17999;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-variant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant22-variant23-variant24-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant36-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:483,56:539:99:660,0,19910:260,223,34,22
chr2	96521297	.	T	C	8779.58	PASS	AC=1;AF=0.5;AN=2;DP=20274;set=variant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:175,329:504:99:8451,0,3759:88,87,148,181
chr2	96521324	.	A	G	10694.2	PASS	AC=1;AF=0.5;AN=2;DP=17852;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:175,276:451:99:10656,0,6483:84,91,121,155
chr2	96521334	.	T	C	1965.1	PASS	AC=1;AF=0.5;AN=2;DP=15910;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant14-variant15-variant16-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:324,128:452:99:2253,0,11491:152,172,60,68
chr2	96521336	.	T	C	10288.7	PASS	AC=1;AF=0.5;AN=2;DP=17180;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:190,264:454:99:10406,0,6787:88,102,125,139
chr2	96521406	.	C	T	4495.78	PASS	AC=1;AF=0.5;AN=2;DP=14488;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:194,214:408:99:5721,0,5072:107,87,122,92
chr2	96521438	.	A	G	4788.23	PASS	AC=1;AF=0.5;AN=2;DP=14884;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:190,199:389:99:7663,0,7100:110,80,124,75
chr2	96521455	.	A	G	5263.9	PASS	AC=1;AF=0.5;AN=2;DP=16664;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:200,234:434:99:9096,0,8102:123,77,139,95
chr2	96521477	.	A	AG	3187.63	PASS	AC=1;AF=0.5;AN=2;DP=19223;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:259,252:511:99:9638,0,10395:161,98,139,113
chr2	96521479	.	A	AAT,AT	4351.96	PASS	AC=0,1;AF=0.057,0.443;AN=2;DP=19680;set=Intersection	GT:DP:GQ:SB	0/2:482:99:145,81,141,115
chr2	96521482	.	ATGAG	AAG,A	4540.29	PASS	AC=1,0;AF=0.477,0.023;AN=2;DP=20603;set=Intersection	GT:DP:GQ:SB	0/1:520:99:155,87,152,126
chr2	96521486	.	G	A	3753.22	PASS	AC=1;AF=0.5;AN=2;DP=20360;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:266,270:536:99:10341,0,10361:169,97,147,123
chr2	96521512	.	A	C	8609.47	PASS	AC=1;AF=0.5;AN=2;DP=23974;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:270,331:601:99:7751,0,7373:174,96,153,178
chr2	96521548	.	G	A	10644.3	PASS	AC=1;AF=0.5;AN=2;DP=24943;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:353,256:609:99:9543,0,14227:193,160,110,146
chr2	96521556	.	T	C	10201.5	PASS	AC=1;AF=0.5;AN=2;DP=24673;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:366,242:608:99:9169,0,14765:196,170,105,137
chr2	96521563	.	G	A	5279.32	PASS	AC=1;AF=0.5;AN=2;DP=24321;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:378,230:608:99:8766,0,15044:203,175,97,133
chr2	96521607	.	G	C	5230.99	PASS	AC=1;AF=0.5;AN=2;DP=23105;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:469,126:595:99:3549,0,19649:235,234,43,83
chr2	96521608	.	G	A	5230.99	PASS	AC=1;AF=0.5;AN=2;DP=22920;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:473,120:593:99:3552,0,19611:237,236,38,82
chr2	96521609	.	T	C	5230.99	PASS	AC=1;AF=0.5;AN=2;DP=22870;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:470,115:585:99:3555,0,19569:232,238,35,80
chr2	96523006	.	A	C	40.7	PASS	AC=1;AF=0.767;AN=2;DP=763;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:438,0,379:5,3,7,4
chr2	96523009	.	A	C	40.7	PASS	AC=1;AF=0.767;AN=2;DP=777;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:438,0,379:5,3,7,4
chr2	96523047	.	A	G	73.02	PASS	AC=1;AF=0.75;AN=2;DP=1227;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:261,0,309:10,4,7,6
chr2	96523096	.	T	C	97.42	PASS	AC=1;AF=0.698;AN=2;DP=1601;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:306,0,598:17,11,8,9
chr2	96592982	.	T	C	205.03	PASS	AC=1;AF=0.5;AN=2;DP=3139;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-filterInvariant15-filterInvariant16-variant18-filterInvariant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant28-variant29-variant30-variant32-filterInvariant34-variant35-filterInvariant36-filterInvariant37-variant39-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:98,9:107:80:80,0,4287:51,47,9,0
chr2	96593000	.	A	G	549.98	PASS	AC=1;AF=0.5;AN=2;DP=4366;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:104,12:116:99:239,0,4563:49,55,9,3
chr2	96593016	.	C	A	601.02	PASS	AC=1;AF=0.5;AN=2;DP=4516;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,17:127:99:271,0,4716:52,58,10,7
chr2	96593025	.	C	T	601.05	PASS	AC=1;AF=0.5;AN=2;DP=4498;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,19:124:99:443,0,2623:48,57,11,8
chr2	96593048	.	G	GA	625.13	PASS	AC=1;AF=0.5;AN=2;DP=4227;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,18:113:99:467,0,4027:38,57,10,8
chr2	96593057	.	TAATC	T	619.06	PASS	AC=1;AF=0.5;AN=2;DP=4200;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,18:115:99:458,0,4165:39,58,10,8
chr2	96593100	.	G	A	500.11	PASS	AC=1;AF=0.5;AN=2;DP=1325;set=variant-variant5-variant6-variant8-filterInvariant10-filterInvariant12-variant15-filterInvariant25-filterInvariant28-variant29-filterInvariant30-filterInvariant32-filterInvariant34-variant38-filterInvariant39-variant40-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:79,12:91:99:222,0,3386:28,51,4,8
chr2	96593108	.	T	G	506.09	PASS	AC=1;AF=0.5;AN=2;DP=3082;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:76,13:89:99:298,0,2174:27,49,5,8
chr2	96593118	.	T	A	295.35	PASS	AC=1;AF=0.5;AN=2;DP=2774;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:71,10:81:99:189,0,3057:27,44,3,7
chr2	96594697	.	G	C	154.85	PASS	AC=1;AF=0.5;AN=2;DP=1833;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:625,0,610:16,7,16,9
chr2	96594723	.	A	G	213.54	PASS	AC=1;AF=0.5;AN=2;DP=2131;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:804,0,1275:22,10,13,9
chr2	96594735	.	C	T	130.8	PASS	AC=1;AF=0.5;AN=2;DP=2247;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:764,0,1554:24,14,12,9
chr2	96594742	.	C	T	115.79	PASS	AC=1;AF=0.5;AN=2;DP=2377;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,20:58:99:722,0,1577:25,13,11,9
chr2	96594759	.	G	A	104.11	PASS	AC=1;AF=0.5;AN=2;DP=2690;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,17:64:99:611,0,1961:28,19,10,7
chr2	96594767	.	A	C,T	73.35	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=2089;set=filterInvariant-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-variant10-filterInvariant11-variant13-variant15-filterInvariant17-filterInvariant19-filterInvariant20-variant21-filterInvariant23-variant26-variant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant42-variant43	GT:DP:GQ:SB	0/1:64:99:29,22,8,5
chr2	96594777	.	C	T	70.37	PASS	AC=1;AF=0.5;AN=2;DP=2659;FractionInformativeReads=1;set=filterInvariant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:55,11:66:99:296,0,2276:32,23,6,5
chr2	96594791	.	A	G	345.6	PASS	AC=1;AF=0.5;AN=2;DP=2148;FractionInformativeReads=1;set=variant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-variant13-filterInvariant14-filterInvariant15-variant18-filterInvariant19-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant31-variant32-filterInvariant33-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:66,9:75:99:173,0,2797:38,28,5,4
chr2	96594802	.	A	T	73.55	PASS	AC=1;AF=0.5;AN=2;DP=1433;FractionInformativeReads=1;set=filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant11-variant13-filterInvariant15-filterInvariant19-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant29-filterInvariant32-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:74,7:81:71:71,0,2987:43,31,3,4
chr2	96594874	.	C	A	166.21	PASS	AC=1;AF=0.5;AN=2;DP=2133;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-variant5-filterInvariant6-variant8-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-variant33-filterInvariant34-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:78,9:87:99:137,0,3332:32,46,4,5
chr2	96594878	.	G	C	166.21	PASS	AC=1;AF=0.5;AN=2;DP=2187;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-variant5-variant6-variant8-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-variant33-filterInvariant34-filterInvariant37-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:76,9:85:99:146,0,3206:32,44,4,5
chr2	96594881	.	G	A	192.95	PASS	AC=1;AF=0.5;AN=2;DP=2242;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-variant5-variant6-variant8-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-variant33-filterInvariant34-filterInvariant37-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:74,10:84:99:189,0,3168:32,42,4,6
chr2	96594883	.	C	T	198.97	PASS	AC=1;AF=0.5;AN=2;DP=2226;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-variant5-variant6-variant8-variant11-variant12-filterInvariant13-variant15-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-variant33-filterInvariant34-filterInvariant37-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:73,10:83:99:195,0,3084:30,43,4,6
chr2	96594906	.	G	GA	223.45	PASS	AC=1;AF=0.5;AN=2;DP=2692;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant8-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:62,11:73:99:275,0,2538:26,36,5,6
chr2	96594915	.	TAATC	T	223.25	PASS	AC=1;AF=0.5;AN=2;DP=2676;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant17-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:62,11:73:99:272,0,2580:26,36,5,6
chr2	96594924	.	T	C	241.31	PASS	AC=1;AF=0.5;AN=2;DP=2544;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-filterInvariant17-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,11:66:99:281,0,2486:22,33,5,6
chr2	96594958	.	G	A	98.48	PASS	AC=1;AF=0.5;AN=2;DP=1355;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant13-variant15-variant18-variant19-filterInvariant20-filterInvariant22-filterInvariant25-variant26-variant28-variant31-variant32-variant33-filterInvariant34-filterInvariant36-variant37-variant38-filterInvariant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,17:56:99:300,0,1425:14,25,7,10
chr2	96594966	.	T	G	310.9	PASS	AC=1;AF=0.5;AN=2;DP=2222;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,29:59:99:935,0,751:10,20,16,13
chr2	96595032	.	A	T	244.3	PASS	AC=1;AF=0.5;AN=2;DP=1652;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:840,0,423:9,13,17,18
chr2	96601240	.	G	A	969.49	PASS	AC=1;AF=0.5;AN=2;DP=2675;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:41,31:72:99:640,0,913:23,18,22,9
chr2	96601296	.	A	ATGATTAAT	2297.79	PASS	AC=1;AF=0.5;AN=2;DP=4730;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:2704,0,2512:33,27,36,29
chr2	96601312	.	G	A	893.4	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5297;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:89,65:154:99:1135,0,1830:48,41,33,32
chr2	96601345	.	T	C,G	968.37	PASS	AC=1,0;AF=0.477,0.045;AN=2;DP=4777;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:125:99:28,28,34,35
chr2	96601364	.	C	T	556.89	PASS	AC=1;AF=0.5;AN=2;DP=4212;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:53,70:123:99:1426,0,1062:26,27,32,38
chr2	96604516	.	C	T,A	4590.81	PASS	AC=1,0;AF=0.5,0.011;AN=2;DP=9502;set=Intersection	GT:DP:GQ:SB	0/1:236:99:32,17,133,54
chr2	96604591	.	A	G	7666.28	PASS	AC=1;AF=0.5;AN=2;DP=19381;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:122,384:506:99:9364,0,2159:63,59,184,200
chr2	96604632	.	A	T	6850.98	PASS	AC=1;AF=0.5;AN=2;DP=16994;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:122,304:426:99:7841,0,2225:59,63,114,190
chr2	96604679	.	C	T	3878.31	PASS	AC=1;AF=0.5;AN=2;DP=9345;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:92,146:238:99:4032,0,1948:36,56,39,107
chr2	96604730	.	T	C	714.98	PASS	AC=1;AF=0.5;AN=2;DP=2410;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,25:63:99:733,0,1102:8,30,0,25
chr2	96604747	.	C	T	153.91	PASS	AC=1;AF=0.5;AN=2;DP=476;set=variant4-filterInvariant5-variant6-variant9-variant12-variant15-variant21-variant26-variant28-variant29-filterInvariant31-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:35,7:42:99:142,0,1495:3,32,0,7
chr2	96604765	.	T	G	93.89	PASS	AC=1;AF=0.5;AN=2;DP=299;FS=0;FractionInformativeReads=1;set=variant4-variant6-filterInvariant8-variant9-filterInvariant11-variant12-variant13-variant15-variant21-variant22-variant26-variant28-variant39	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:99:105,0,870:0,20,0,4
chr2	96604767	.	C	A	112.64	PASS	AC=1;AF=0.5;AN=2;DP=739;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:212,0,626:0,16,0,7
chr2	96605568	.	C	T	33.47	PASS	AC=1;AF=0.5;AN=2;DP=69;FractionInformativeReads=1;set=variant6-variant10-variant15-variant17-variant37-variant38-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:59:59,0,197:5,1,2,0
chr2	96606944	.	C	T	82.55	PASS	AC=1;AF=0.5;AN=2;DP=708;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:212,0,359:8,5,6,5
chr2	96606985	.	T	C	226.57	PASS	AC=1;AF=0.5;AN=2;DP=673;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:244,0,861:7,9,2,5
chr2	96606998	.	C	T	226.57	PASS	AC=1;AF=0.5;AN=2;DP=592;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:238,0,945:7,11,2,5
chr2	96607003	.	G	A	226.56	PASS	AC=1;AF=0.5;AN=2;DP=557;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:238,0,945:7,11,2,5
chr2	96607028	.	T	C	145.59	PASS	AC=1;AF=0.5;AN=2;DP=381;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant7-variant10-variant13-variant15-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:165,0,801:4,10,1,4
chr2	96607048	.	G	A	151.61	PASS	AC=1;AF=0.5;AN=2;DP=248;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant7-variant10-variant13-variant15-variant21-variant22-variant23-variant28-variant29-variant31-variant33-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,3:16:87:87,0,673:3,10,0,3
chr2	96610329	.	G	C	261.73	PASS	AC=1;AF=0.5;AN=2;DP=3626;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,24:91:99:370,0,1781:43,24,15,9
chr2	96610395	.	C	CA	873.71	PASS	AC=1;AF=0.5;AN=2;DP=5264;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:98,45:143:99:1586,0,4050:52,46,23,22
chr2	96610399	.	C	A	879.76	PASS	AC=1;AF=0.5;AN=2;DP=5267;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:101,45:146:99:1586,0,4050:53,48,23,22
chr2	96610410	.	T	A	885.77	PASS	AC=1;AF=0.5;AN=2;DP=5253;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:101,45:146:99:1586,0,4002:52,49,23,22
chr2	96610413	.	C	T	888.79	PASS	AC=1;AF=0.5;AN=2;DP=5235;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,45:140:99:1583,0,4044:50,45,23,22
chr2	96610420	.	G	T	903.83	PASS	AC=1;AF=0.5;AN=2;DP=5227;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,45:140:99:1601,0,3830:49,46,23,22
chr2	96610479	.	A	G	45.44	PASS	AC=1;AF=0.5;AN=2;DP=1302;set=filterInvariant-variant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant12-filterInvariant15-variant18-variant23-filterInvariant26-variant27-variant30-variant31-filterInvariant36-filterInvariant37	GT:AD:DP:GQ:PL:SB	0/1:89,17:106:99:195,0,2500:40,49,6,11
chr2	96610759	.	T	A	150.28	PASS	AC=1;AF=0.5;AN=2;DP=683;FractionInformativeReads=1;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,3:17:99:180,0,626:11,3,3,0
chr2	96610768	.	T	G	273.65	PASS	AC=1;AF=0.5;AN=2;DP=933;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:322,0,656:12,4,10,0
chr2	96610787	.	C	CA	1405.28	PASS	AC=1;AF=0.5;AN=2;DP=2312;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:1622,0,1269:24,7,26,3
chr2	96610805	.	AAGAAAG	A	133.79	PASS	AC=1;AF=0.5;AN=2;DP=4591;set=filterInvariant-variant2-variant3-variant5-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant27-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,26:140:99:260,0,4135:87,27,24,2
chr2	96610806	.	AGAAAG	A,AAAAG	243.13	PASS	AC=1,0;AF=0.476,0.024;AN=2;DP=2706;set=filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant10-variant15-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant26-filterInvariant28-filterInvariant29-filterInvariant33-variant35-filterInvariant36-variant37-variant39-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:140:99:85,20,26,9
chr2	96610809	.	AAG	A	433.93	PASS	AC=1;AF=0.5;AN=2;DP=3178;set=variant-filterInvariant3-filterInvariant4-variant6-variant8-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-filterInvariant21-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant30-variant32-filterInvariant33-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:113,28:141:99:793,0,4706:87,26,26,2
chr2	96610836	.	T	C	6020.84	PASS	AC=1;AF=0.5;AN=2;DP=10747;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:82,232:314:99:7714,0,2372:54,28,165,67
chr2	96610899	.	T	C	13827.2	PASS	AC=1;AF=0.5;AN=2;DP=20014;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:125,448:573:99:18029,0,4054:69,56,262,186
chr2	96610921	.	T	G	14826.9	PASS	AC=1;AF=0.5;AN=2;DP=21280;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:144,483:627:99:19068,0,4474:75,69,268,215
chr2	96610952	.	T	C	9921.75	PASS	AC=1;AF=0.5;AN=2;DP=19242;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:129,436:565:99:12015,0,2082:60,69,209,227
chr2	96610958	.	G	T	1091.75	PASS	AC=1;AF=0.5;AN=2;DP=9958;set=variant-filterInvariant2-variant3-variant5-variant7-filterInvariant8-filterInvariant10-filterInvariant15-variant21-variant22-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant36-variant37-variant40-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:462,82:544:99:754,0,15962:217,245,36,46
chr2	96611018	.	G	A	5017.04	PASS	AC=1;AF=0.5;AN=2;DP=8528;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,183:251:99:5637,0,1408:23,45,47,136
chr2	96611078	.	T	G	2043.99	PASS	AC=1;AF=0.5;AN=2;DP=2927;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,70:89:99:2786,0,555:3,16,3,67
chr2	96611088	.	G	A	1792.3	PASS	AC=1;AF=0.5;AN=2;DP=2478;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,54:71:99:2268,0,525:2,15,3,51
chr2	96614366	.	A	C	320.93	PASS	AC=1;AF=0.5;AN=2;DP=1496;set=variant2-filterInvariant3-variant4-filterInvariant5-filterInvariant8-variant12-variant13-filterInvariant15-variant21-filterInvariant22-filterInvariant27-filterInvariant29-variant31-variant38-filterInvariant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,14:93:98:98,0,1795:41,38,9,5
chr2	96614383	.	A	G	468.55	PASS	AC=1;AF=0.5;AN=2;DP=2681;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant8-filterInvariant9-filterInvariant10-variant12-variant13-filterInvariant15-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant28-variant29-variant31-filterInvariant32-filterInvariant35-filterInvariant36-variant38-variant39-filterInvariant40-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,17:94:99:146,0,1847:37,40,10,7
chr2	96614407	.	G	A	496.39	PASS	AC=1;AF=0.5;AN=2;DP=2672;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant12-variant13-variant15-filterInvariant18-variant20-variant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-variant29-variant31-filterInvariant32-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,19:89:99:221,0,1684:32,38,11,8
chr2	96614424	.	G	T	528.2	PASS	AC=1;AF=0.5;AN=2;DP=2637;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant12-variant13-variant15-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant22-variant24-variant25-filterInvariant27-variant28-variant29-variant31-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,18:76:99:220,0,1509:23,35,10,8
chr2	96614434	.	A	AC	250.04	PASS	AC=1;AF=0.5;AN=2;DP=3018;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,18:64:99:617,0,1877:18,28,10,8
chr2	96614438	.	C	A	259.1	PASS	AC=1;AF=0.5;AN=2;DP=2990;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,18:64:99:617,0,1877:18,28,10,8
chr2	96616348	.	C	G	871.33	PASS	AC=1;AF=0.5;AN=2;DP=2197;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,34:55:99:1442,0,1135:16,5,28,6
chr2	96616353	.	GT	G	223.14	PASS	AC=1;AF=0.5;AN=2;DP=2394;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,24:62:99:862,0,1880:29,9,20,4
chr2	96616354	.	T	C	433.13	PASS	AC=1;AF=0.5;AN=2;DP=2396;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,14:62:99:445,0,2220:37,11,12,2
chr2	96616355	.	T	C	232.18	PASS	AC=1;AF=0.5;AN=2;DP=2455;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:862,0,1880:30,10,22,5
chr2	96616361	.	A	C	166.19	PASS	AC=1;AF=0.5;AN=2;DP=1567;FractionInformativeReads=1;set=variant2-filterInvariant3-variant5-filterInvariant7-variant9-filterInvariant11-variant12-filterInvariant15-variant16-filterInvariant17-filterInvariant19-variant22-filterInvariant23-filterInvariant26-variant27-filterInvariant29-variant30-filterInvariant34-filterInvariant36-filterInvariant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,7:76:83:83,0,3215:53,16,5,2
chr2	96616362	.	A	T	166.17	PASS	AC=1;AF=0.5;AN=2;DP=1595;set=variant2-filterInvariant3-variant5-filterInvariant7-variant9-filterInvariant11-variant12-filterInvariant15-variant16-filterInvariant17-filterInvariant19-variant22-filterInvariant23-filterInvariant26-variant27-filterInvariant29-variant30-filterInvariant34-filterInvariant36-filterInvariant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,7:76:86:86,0,3181:53,16,5,2
chr2	96616378	.	C	T	1420.08	PASS	AC=1;AF=0.5;AN=2;DP=3987;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,60:93:99:2059,0,1339:23,10,43,17
chr2	96616442	.	C	A	2224.37	PASS	AC=1;AF=0.5;AN=2;DP=6541;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,103:164:99:4078,0,2249:34,27,51,52
chr2	96616448	.	G	T	2224.37	PASS	AC=1;AF=0.5;AN=2;DP=6535;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:63,104:167:99:4068,0,2271:34,29,50,54
chr2	96616485	.	C	G	1892.5	PASS	AC=1;AF=0.5;AN=2;DP=6060;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,85:143:99:3163,0,2088:28,30,33,52
chr2	96616501	.	C	CAA	1836.5	PASS	AC=1;AF=0.5;AN=2;DP=5439;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,74:130:99:2942,0,2123:26,30,23,51
chr2	96616505	.	AGC	A	1671.82	PASS	AC=1;AF=0.5;AN=2;DP=5086;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,69:125:99:2810,0,2180:26,30,19,50
chr2	96616532	.	T	G	1021.08	PASS	AC=1;AF=0.5;AN=2;DP=3677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1934,0,2041:21,33,9,41
chr2	96616571	.	C	A	208.25	PASS	AC=1;AF=0.5;AN=2;DP=1713;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,15:56:99:454,0,1606:15,26,0,15
chr2	96616576	.	T	C	178.4	PASS	AC=1;AF=0.5;AN=2;DP=1554;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,10:48:99:334,0,1584:14,24,0,10
chr2	96616580	.	A	G	181.41	PASS	AC=1;AF=0.5;AN=2;DP=1422;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,8:45:99:267,0,1527:13,24,0,8
chr2	96616597	.	A	G	85.54	PASS	AC=1;AF=0.5;AN=2;DP=1064;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,6:33:99:207,0,1197:9,18,1,5
chr2	96616599	.	G	A	85.54	PASS	AC=1;AF=0.5;AN=2;DP=1050;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,7:33:99:213,0,1113:9,17,1,6
chr2	96616607	.	G	T	85.54	PASS	AC=1;AF=0.5;AN=2;DP=841;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,7:30:99:222,0,987:8,15,1,6
chr2	96616622	.	C	T	106.61	PASS	AC=1;AF=0.5;AN=2;DP=573;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,4:26:99:102,0,891:7,15,1,3
chr2	96616654	.	C	A	124.68	PASS	AC=1;AF=0.5;AN=2;DP=385;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,3:17:81:81,0,567:4,10,1,2
chr2	96616667	.	A	C	127.69	PASS	AC=1;AF=0.5;AN=2;DP=351;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:93:93,0,453:4,7,1,2
chr2	96616892	.	A	G	85.7	PASS	AC=1;AF=0.5;AN=2;DP=192;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant31-variant32-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,159:2,2,3,0
chr2	96616894	.	G	A	82.69	PASS	AC=1;AF=0.5;AN=2;DP=190;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant31-variant32-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,159:2,2,3,0
chr2	96616904	.	C	T	33.17	PASS	AC=1;AF=0.5;AN=2;DP=76;FractionInformativeReads=1;set=variant5-variant15-variant27-variant31-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,159:2,2,3,0
chr2	96616911	.	C	G	79.68	PASS	AC=1;AF=0.5;AN=2;DP=220;FractionInformativeReads=1;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant31-variant32-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,159:2,2,3,0
chr2	96616913	.	C	T	79.68	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant31-variant32-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,159:2,2,3,0
chr2	96616947	.	G	A	269.1	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant34-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,150:4,0,6,0
chr2	96616951	.	A	G	289.63	PASS	AC=1;AF=0.5;AN=2;DP=343;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,150:4,0,6,0
chr2	96616957	.	A	G	115.65	PASS	AC=1;AF=0.5;AN=2;DP=383;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:324,0,144:4,0,8,0
chr2	96616967	.	G	C	115.65	PASS	AC=1;AF=0.5;AN=2;DP=432;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:408,0,138:4,0,10,0
chr2	96616976	.	A	G	154.63	PASS	AC=1;AF=0.5;AN=2;DP=505;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:90:495,0,90:3,0,11,1
chr2	96616979	.	G	C	154.63	PASS	AC=1;AF=0.5;AN=2;DP=535;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,13:16:84:579,0,84:3,0,12,1
chr2	96616997	.	T	G	184.36	PASS	AC=1;AF=0.5;AN=2;DP=819;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:619,0,194:6,0,14,2
chr2	96617023	.	C	A	772.3	PASS	AC=1;AF=0.5;AN=2;DP=1905;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,37:51:99:1564,0,459:11,3,23,14
chr2	96617025	.	C	A	769.29	PASS	AC=1;AF=0.5;AN=2;DP=2072;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,39:54:99:1640,0,550:12,3,24,15
chr2	96617039	.	A	AC	1339.89	PASS	AC=1;AF=0.5;AN=2;DP=844;set=variant3-variant9-variant10-variant15-variant18-variant19-variant21-variant25-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,46:76:99:1320,0,810:20,10,31,15
chr2	96617069	.	A	G	1943.37	PASS	AC=1;AF=0.5;AN=2;DP=4560;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,70:126:99:2961,0,2364:38,18,48,22
chr2	96617090	.	A	G	2301.37	PASS	AC=1;AF=0.5;AN=2;DP=5770;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,78:149:99:3055,0,2820:45,26,54,24
chr2	96617106	.	A	C	2451.26	PASS	AC=1;AF=0.5;AN=2;DP=6278;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:82,82:164:99:3268,0,3358:53,29,55,27
chr2	96617111	.	G	A	2445.24	PASS	AC=1;AF=0.5;AN=2;DP=6470;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:86,85:171:99:3352,0,3352:54,32,53,32
chr2	96617113	.	G	A	2484.22	PASS	AC=1;AF=0.5;AN=2;DP=6524;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:86,84:170:99:3382,0,3517:54,32,52,32
chr2	96617125	.	T	C	2505.14	PASS	AC=1;AF=0.5;AN=2;DP=6851;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:99,89:188:99:3478,0,3928:59,40,51,38
chr2	96617132	.	T	C	2571.07	PASS	AC=1;AF=0.5;AN=2;DP=6999;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:105,87:192:99:3373,0,4188:62,43,49,38
chr2	96617155	.	A	G	2383.85	PASS	AC=1;AF=0.5;AN=2;DP=7215;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:117,86:203:99:3204,0,4409:65,52,46,40
chr2	96617194	.	A	G	1819.3	PASS	AC=1;AF=0.5;AN=2;DP=6574;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:102,67:169:99:2352,0,4043:54,48,25,42
chr2	96617209	.	G	T	1631.36	PASS	AC=1;AF=0.5;AN=2;DP=5894;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:96,53:149:99:1988,0,4240:47,49,18,35
chr2	96617228	.	T	A	256.11	PASS	AC=1;AF=0.5;AN=2;DP=5083;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,31:129:99:659,0,4603:40,58,3,28
chr2	96617231	.	G	A	1156.27	PASS	AC=1;AF=0.5;AN=2;DP=4895;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,34:124:99:1184,0,4286:39,51,1,33
chr2	96617256	.	A	G	991.36	PASS	AC=1;AF=0.5;AN=2;DP=4015;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,30:109:99:1022,0,3706:29,50,0,30
chr2	96617262	.	A	G	894.66	PASS	AC=1;AF=0.5;AN=2;DP=3727;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,24:96:99:917,0,3421:26,46,0,24
chr2	96617277	.	A	T	575.18	PASS	AC=1;AF=0.5;AN=2;DP=132;FractionInformativeReads=1;set=variant15-variant39	GT:AD:DP:GQ:PL:SB	0/1:49,26:75:99:603,0,1613:12,37,8,18
chr2	96617304	.	A	T	442.43	PASS	AC=1;AF=0.5;AN=2;DP=1687;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-filterInvariant14-variant15-variant16-filterInvariant18-filterInvariant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-variant37-variant38-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,11:51:99:309,0,1962:14,26,0,11
chr2	96617323	.	G	C	310.41	PASS	AC=1;AF=0.5;AN=2;DP=848;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,7:38:99:198,0,1757:10,21,0,7
chr2	96617324	.	G	A	271.41	PASS	AC=1;AF=0.5;AN=2;DP=832;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant21-filterInvariant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,7:38:99:198,0,1757:10,21,0,7
chr2	96619641	.	A	C	322.58	PASS	AC=1;AF=0.5;AN=2;DP=1088;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:531,0,756:17,2,14,0
chr2	96619642	.	A	T	322.58	PASS	AC=1;AF=0.5;AN=2;DP=1115;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:531,0,756:17,2,14,0
chr2	96619688	.	T	G	1326.56	PASS	AC=1;AF=0.5;AN=2;DP=4300;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,51:110:99:1234,0,1667:45,14,43,8
chr2	96619734	.	C	T	2545.12	PASS	AC=1;AF=0.5;AN=2;DP=9351;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:120,104:224:99:2560,0,3155:78,42,70,34
chr2	96619774	.	G	A	3994.44	PASS	AC=1;AF=0.5;AN=2;DP=13083;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:171,148:319:99:5450,0,6711:99,72,85,63
chr2	96619799	.	A	C	4041.73	PASS	AC=1;AF=0.5;AN=2;DP=14181;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:196,157:353:99:5522,0,7133:99,97,81,76
chr2	96619831	.	T	C	2442.43	PASS	AC=1;AF=0.5;AN=2;DP=13007;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:221,102:323:99:2366,0,8379:100,121,44,58
chr2	96619832	.	A	G,T	2151.94	PASS	AC=1,0;AF=0.419,0.081;AN=2;DP=12510;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:295:99:85,94,48,68
chr2	96619837	.	C	G	4169.79	PASS	AC=1;AF=0.5;AN=2;DP=12243;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:175,136:311:99:5203,0,6956:82,93,55,81
chr2	96619838	.	A	C	4088.82	PASS	AC=1;AF=0.5;AN=2;DP=12153;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:174,135:309:99:5237,0,6932:81,93,55,80
chr2	96619853	.	T	C	1451.23	PASS	AC=1;AF=0.5;AN=2;DP=10256;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:186,81:267:99:2902,0,7688:74,112,31,50
chr2	96619873	.	C	A	907.77	PASS	AC=1;AF=0.5;AN=2;DP=8150;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,61:224:99:2118,0,6720:60,103,22,39
chr2	96626292	.	C	T	452.58	PASS	AC=1;AF=0.955;AN=2;DP=1013;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,12:44:99:259,0,900:10,22,3,9
chr2	96684876	.	A	G	607.65	PASS	AC=1;AF=0.955;AN=2;DP=2819;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:850,0,666:19,15,20,18
chr2	96687426	.	CT	C	286.61	PASS	AC=1;AF=0.779;AN=2;DP=1647;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,13:46:99:447,0,2319:12,21,2,11
chr2	96687428	.	GC	G	286.64	PASS	AC=1;AF=0.779;AN=2;DP=1593;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,13:46:99:447,0,2319:12,21,2,11
chr2	96688929	.	G	A	32.34	PASS	AC=1;AF=0.5;AN=2;DP=491;set=filterInvariant-filterInvariant3-filterInvariant7-filterInvariant14-variant15-filterInvariant20-filterInvariant22-filterInvariant28	GT:AD:DP:GQ:PL:SB	0/1:51,24:75:99:368,0,1642:34,17,12,12
chr2	96690445	.	G	A	2289.07	PASS	AC=1;AF=0.5;AN=2;DP=189;FS=0.536;FractionInformativeReads=1;MQ=60;MQRankSum=-0.821;QD=12.11;ReadPosRankSum=3.722;SOR=0.627;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:93,96:189:99:2317,0,2264:41,52,44,52
chr2	96698185	.	G	A	372.78	PASS	AC=1;AF=0.813;AN=2;DP=666;FractionInformativeReads=1;set=variant2-variant3-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant24-variant27-filterInvariant28-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:463,0,500:9,14,8,14
chr2	96778665	.	T	TA,TAA	653.12	PASS	AC=2,0;AF=0.6,0.025;AN=2;DP=1756;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:49:19:4,2,29,14
chr2	96780716	.	T	G	7471.45	PASS	AC=2;AF=0.825;AN=2;DP=13670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,403:403:99:11910,1206,0:0,0,222,181
chr2	96780986	.	C	CTCCTCCTCT	8025.12	PASS	AC=2;AF=0.825;AN=2;DP=10009;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:11542,806,0:0,0,132,118
chr2	96781257	.	C	G	3424.88	PASS	AC=1;AF=0.5;AN=2;DP=1318;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:174,250:424:99:6481,0,4363:100,74,141,109
chr2	96781986	.	G	C	1639.51	PASS	AC=2;AF=0.825;AN=2;DP=1830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1890,165,0:0,0,17,38
chr2	96795857	.	T	C	2568.51	PASS	AC=1;AF=0.817;AN=2;DP=4096;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,61:105:99:1714,0,985:19,25,25,36
chr2	96851119	.	C	A	1811.1	PASS	AC=1;AF=0.78;AN=2;DP=9437;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:203,131:334:99:3177,0,5104:100,103,71,60
chr2	96934504	.	T	C	327.73	PASS	AC=1;AF=0.655;AN=2;DP=814;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:557,0,573:7,14,6,15
chr2	96937296	.	G	C	1555.93	PASS	AC=1;AF=0.655;AN=2;DP=3496;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,86:178:99:2254,0,2471:46,46,41,45
chr2	96943473	.	T	C	530.56	PASS	AC=1;AF=0.655;AN=2;DP=2086;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:950,0,936:18,15,14,19
chr2	96950487	.	CT	CTT,C	227.03	PASS	AC=1,0;AF=0.607,0.018;AN=2;DP=909;MQ=60;set=variant-filterInvariant3-variant5-variant8-filterInvariant9-variant10-filterInvariant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:99:2,7,4,13
chr2	96952833	.	A	G	1773.27	PASS	AC=1;AF=0.635;AN=2;DP=4858;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,107:244:99:2363,0,3238:62,75,50,57
chr2	96955480	.	T	C	1650.53	PASS	AC=1;AF=0.655;AN=2;DP=3066;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,80:157:99:1986,0,1803:49,28,48,32
chr2	96956315	.	T	G	2070.12	PASS	AC=2;AF=0.989;AN=2;DP=3297;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3303,290,0:0,0,42,55
chr2	96962859	.	A	G	268.82	PASS	AC=1;AF=0.655;AN=2;DP=974;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,22:36:99:579,0,334:4,10,8,14
chr2	96966661	.	G	C	743.28	PASS	AC=1;AF=0.655;AN=2;DP=1123;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:505,0,594:14,9,13,9
chr2	96970946	.	C	T	307.61	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.707;QD=13.98;ReadPosRankSum=-2.233;SOR=0.693;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:336,0,378:9,2,9,2
chr2	96971355	.	T	C	184.81	PASS	AC=1;AF=0.655;AN=2;DP=1011;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,24:56:99:613,0,930:8,24,9,15
chr2	97203224	.	T	C	3968.43	PASS	AC=2;AF=0.953;AN=2;DP=3899;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3813,360,0:0,0,56,64
chr2	97284917	.	G	A	781.77	PASS	AC=2;AF=0.611;AN=2;DP=1815;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2010,180,0:0,0,41,19
chr2	97315570	.	C	T	589.98	PASS	AC=1;AF=0.607;AN=2;DP=640;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:364,0,534:4,13,2,11
chr2	97319534	.	G	C	76.7	PASS	AC=1;AF=0.607;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:25:195,0,25:0,1,1,5
chr2	97463070	.	C	T	189.45	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant15	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:528,0,623:6,13,8,9
chr2	97529360	.	T	A	726.91	PASS	AC=1;AF=0.548;AN=2;DP=1691;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant15-variant18-variant20-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1227,0,1471:32,23,32,17
chr2	97543936	.	T	C	185.85	PASS	AC=1;AF=0.545;AN=2;DP=440;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant13-variant15-variant18-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:412,0,475:8,9,6,8
chr2	97544089	.	G	C	773.96	PASS	AC=1;AF=0.525;AN=2;DP=1503;MQ=60;set=variant2-variant3-variant7-variant9-variant13-variant15-variant18-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:984,0,1202:30,18,25,16
chr2	97559759	.	G	A	1260.75	PASS	AC=1;AF=0.5;AN=2;DP=1785;MQ=60;set=variant2-variant15-variant18-variant21-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,89:186:99:1978,0,2372:51,46,47,42
chr2	97560629	.	C	T	45.19	PASS	AC=1;AF=0.571;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant21-variant24-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,106:3,1,2,1
chr2	97560913	.	C	T	773.17	PASS	AC=1;AF=0.5;AN=2;DP=1120;MQ=60;set=variant2-variant15-variant18-variant21-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,53:133:99:1254,0,2058:34,46,23,30
chr2	97587049	.	T	C	1880.1	PASS	AC=2;AF=0.818;AN=2;DP=2904;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3233,295,0:0,0,35,64
chr2	97595109	.	T	C	631.58	PASS	AC=2;AF=0.852;AN=2;DP=1987;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2034,192,0:0,0,26,38
chr2	97613616	.	T	C	799.72	PASS	AC=2;AF=0.864;AN=2;DP=1772;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:937,90,0:0,0,18,12
chr2	97613748	.	C	A	567.65	PASS	AC=2;AF=0.852;AN=2;DP=1052;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:752,72,0:0,0,10,14
chr2	97617140	.	T	C	6736.53	PASS	AC=2;AF=0.864;AN=2;DP=10243;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,263:263:99:8119,786,0:0,0,151,112
chr2	97617227	.	A	G	5472.07	PASS	AC=2;AF=0.864;AN=2;DP=8303;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,241:241:99:7289,721,0:0,0,114,127
chr2	97633013	.	A	G	154.82	PASS	AC=2;AF=0.95;AN=2;DP=238;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,3,0
chr2	97633151	.	A	G	581.6	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.345;FractionInformativeReads=1;MQ=60;MQRankSum=0.483;QD=14.19;ReadPosRankSum=-1.082;SOR=0.402;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:610,0,580:15,5,14,7
chr2	97637516	.	T	C	763.98	PASS	AC=2;AF=0.92;AN=2;DP=1575;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1367,114,0:0,0,31,7
chr2	97637905	.	T	C	7470.91	PASS	AC=2;AF=0.92;AN=2;DP=9469;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7517,740,0:0,0,124,123
chr2	97638038	.	A	G	3403.48	PASS	AC=2;AF=0.92;AN=2;DP=3721;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,85:87:99:2913,185,0:2,0,29,56
chr2	97643576	.	T	C	3354.48	PASS	AC=2;AF=0.795;AN=2;DP=6004;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5551,546,0:0,0,80,102
chr2	97693966	.	A	G	1990.46	PASS	AC=2;AF=0.788;AN=2;DP=3278;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2927,296,0:0,0,45,54
chr2	97747894	.	T	C	340.68	PASS	AC=2;AF=0.932;AN=2;DP=1841;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1622,176,0:0,0,26,33
chr2	97747978	.	C	T	472.79	PASS	AC=2;AF=0.75;AN=2;DP=873;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:912,69,0:0,0,10,13
chr2	97751782	.	T	C	61.77	PASS	AC=2;AF=0.859;AN=2;DP=381;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:488,33,0:0,0,5,6
chr2	97751783	.	G	A	61.77	PASS	AC=2;AF=0.859;AN=2;DP=376;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:488,33,0:0,0,5,6
chr2	97751786	.	G	A	61.77	PASS	AC=2;AF=0.859;AN=2;DP=364;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:30:450,30,0:0,0,5,4
chr2	97751832	.	C	A	95.37	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;set=variant5-variant10-variant15-variant17-variant18-variant23-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:126,0,199:4,4,4,1
chr2	97757067	.	C	T	65.04	PASS	AC=2;AF=0.972;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQRankSum=-1.881;ReadPosRankSum=1.159;set=filterInvariant6-filterInvariant8-variant10-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant28-filterInvariant31-filterInvariant33-variant36-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:99,9,0:0,0,3,0
chr2	97757509	.	C	T	2851.35	PASS	AC=2;AF=0.795;AN=2;DP=5613;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:4724,492,0:0,0,67,98
chr2	97784295	.	C	A	1010.22	PASS	AC=2;AF=0.788;AN=2;DP=1001;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1225,104,0:0,0,0,35
chr2	97814956	.	G	A	4544.24	PASS	AC=2;AF=0.857;AN=2;DP=5095;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4197,441,0:0,0,70,77
chr2	97817393	.	A	T	682.83	PASS	AC=1;AF=0.5;AN=2;DP=1592;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:915,0,933:23,1,21,2
chr2	97817394	.	T	G	682.83	PASS	AC=1;AF=0.5;AN=2;DP=1645;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:915,0,933:23,2,23,2
chr2	97817420	.	G	A	2314.15	PASS	AC=1;AF=0.5;AN=2;DP=3471;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,52:93:99:2144,0,1559:30,11,39,13
chr2	97817429	.	A	C	2560.07	PASS	AC=1;AF=0.5;AN=2;DP=3917;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,59:107:99:2363,0,2028:32,16,41,18
chr2	97817449	.	C	T	2841.67	PASS	AC=1;AF=0.5;AN=2;DP=4603;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:55,69:124:99:2729,0,2169:34,21,43,26
chr2	97817450	.	C	G	2841.67	PASS	AC=1;AF=0.5;AN=2;DP=4627;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,69:125:99:2729,0,2169:35,21,43,26
chr2	97817469	.	T	A	2883.63	PASS	AC=1;AF=0.5;AN=2;DP=4996;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,72:131:99:2705,0,2224:36,23,40,32
chr2	97817511	.	T	C	1701.54	PASS	AC=1;AF=0.5;AN=2;DP=5447;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:63,80:143:99:1736,0,1469:35,28,35,45
chr2	97817545	.	A	T	420.28	PASS	AC=1;AF=0.5;AN=2;DP=4798;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,49:121:99:1270,0,2618:35,37,14,35
chr2	97817563	.	C	CA	1122.57	PASS	AC=1;AF=0.5;AN=2;DP=3477;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,38:88:99:1425,0,1871:26,24,5,33
chr2	97817564	.	C	CT,T	3001.82	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=3275;FS=0;set=Intersection	GT:DP:GQ:SB	2/1:84:99:1,0,29,54
chr2	97817578	.	T	C	493.2	PASS	AC=1;AF=0.5;AN=2;DP=3041;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:61,27:88:99:947,0,2143:28,33,1,26
chr2	97817617	.	T	C	151.69	PASS	AC=1;AF=0.5;AN=2;DP=2235;set=variant2-variant3-variant4-variant6-variant8-filterInvariant11-filterInvariant12-variant13-variant15-variant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant32-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,14:87:99:284,0,2976:32,41,1,13
chr2	97817799	.	G	A	142.59	PASS	AC=1;AF=0.5;AN=2;DP=53;FractionInformativeReads=1;set=variant3-filterInvariant15-variant35	GT:AD:DP:GQ:PL:SB	0/1:19,3:22:69:69,0,1144:2,17,1,2
chr2	97817801	.	C	G	142.59	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;set=variant3-variant12-filterInvariant15-variant19-variant20-variant27-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:19,3:22:69:69,0,1144:2,17,1,2
chr2	97817811	.	T	C	145.59	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;set=variant3-variant12-variant15-filterInvariant16-variant19-variant20-variant27-variant30-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:17,3:20:75:75,0,1044:1,16,1,2
chr2	97817817	.	T	C	148.6	PASS	AC=1;AF=0.5;AN=2;DP=147;FractionInformativeReads=1;set=variant3-variant12-variant15-filterInvariant16-variant19-variant20-variant27-variant30-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:16,3:19:78:78,0,976:0,16,1,2
chr2	97817821	.	C	T	31.66	PASS	AC=1;AF=0.5;AN=2;DP=150;FractionInformativeReads=1;set=variant2-variant3-variant12-variant15-filterInvariant16-variant19-variant20-variant27-variant30-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:16,3:19:78:78,0,976:0,16,1,2
chr2	97818146	.	G	A	304.52	PASS	AC=1;AF=0.5;AN=2;DP=921;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:495,0,674:11,5,8,5
chr2	97818161	.	C	A	328.45	PASS	AC=1;AF=0.5;AN=2;DP=1203;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:507,0,1091:15,8,8,6
chr2	97818169	.	C	T	325.44	PASS	AC=1;AF=0.5;AN=2;DP=1385;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:504,0,1133:16,10,8,6
chr2	97818188	.	T	C	319.42	PASS	AC=1;AF=0.5;AN=2;DP=1776;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:675,0,1104:17,10,8,10
chr2	97818192	.	A	G	322.43	PASS	AC=1;AF=0.5;AN=2;DP=1865;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:669,0,1214:19,10,8,10
chr2	97818197	.	G	T	319.43	PASS	AC=1;AF=0.5;AN=2;DP=1950;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:705,0,1274:21,10,9,11
chr2	97818236	.	A	C	263.04	PASS	AC=1;AF=0.5;AN=2;DP=2600;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,24:68:99:762,0,2027:28,16,11,13
chr2	97818260	.	GGC	G	217.22	PASS	AC=1;AF=0.5;AN=2;DP=2920;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,20:81:99:652,0,2718:36,25,9,11
chr2	97818264	.	G	GTT	208.22	PASS	AC=1;AF=0.5;AN=2;DP=2925;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,19:82:99:602,0,2788:37,26,8,11
chr2	97818283	.	G	C	34.35	PASS	AC=1;AF=0.5;AN=2;DP=3023;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,14:86:99:368,0,2892:38,34,5,9
chr2	97818348	.	A	G	1424.36	PASS	AC=2;AF=0.803;AN=2;DP=2272;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2364,237,0:0,0,34,45
chr2	97823971	.	T	C	684.08	PASS	AC=2;AF=0.788;AN=2;DP=1521;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:6,56:62:99:1702,151,0:3,3,19,37
chr2	97827700	.	A	G,T	49.69	PASS	AC=1,0;AF=0.45,0.1;AN=2;DP=62;set=variant2-variant3-variant5-variant8-variant10-variant15-variant19-variant21-variant26-variant31	GT:DP:GQ:SB	0/1:6:86:1,2,3,0
chr2	97827737	.	C	T	448.77	PASS	AC=1;AF=0.5;AN=2;DP=528;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:292,0,202:4,3,8,2
chr2	97827757	.	A	G	571.7	PASS	AC=1;AF=0.5;AN=2;DP=734;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:209,0,536:11,5,6,4
chr2	97827787	.	G	A	985.39	PASS	AC=1;AF=0.5;AN=2;DP=1045;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:832,0,453:7,6,12,9
chr2	97827800	.	A	G	1028.85	PASS	AC=1;AF=0.5;AN=2;DP=1066;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,22:33:99:845,0,385:7,4,12,10
chr2	97827818	.	C	CT	252.21	PASS	AC=1;AF=0.566;AN=2;DP=968;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:259,0,593:9,9,8,6
chr2	97827830	.	T	A	210.29	PASS	AC=1;AF=0.5;AN=2;DP=520;set=variant2-variant3-variant5-variant7-variant9-filterInvariant15-variant17-variant23-variant24-variant26-variant28-filterInvariant29-filterInvariant30-variant31-variant35-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,9:35:70:70,0,1007:15,11,4,5
chr2	97827839	.	G	A	768.59	PASS	AC=1;AF=0.5;AN=2;DP=1005;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:692,0,472:7,7,9,9
chr2	97827852	.	C	T	181.51	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.527;FractionInformativeReads=0.941;MQ=44.43;MQRankSum=1.284;QD=5.34;ReadPosRankSum=-0.718;SOR=0.43;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:24,8:32:99:210,0,911:10,14,4,4
chr2	97827881	.	G	T	49.43	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0;FractionInformativeReads=1;set=variant14-variant15-variant19-variant21	GT:AD:DP:GQ:PL:SB	0/1:21,6:27:95:95,0,512:7,14,2,4
chr2	97828929	.	A	G	431.68	PASS	AC=1;AF=0.733;AN=2;DP=672;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,23:26:57:683,0,57:3,0,18,5
chr2	97828982	.	C	T	587.92	PASS	AC=1;AF=0.534;AN=2;DP=1200;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,26:40:99:587,0,327:10,4,15,11
chr2	97829003	.	CAAAAATAA	C	809.79	PASS	AC=1;AF=0.5;AN=2;DP=1461;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:942,0,817:13,9,12,12
chr2	97829029	.	G	A	722.49	PASS	AC=1;AF=0.5;AN=2;DP=1596;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:888,0,919:13,11,9,14
chr2	97829030	.	T	G	722.49	PASS	AC=1;AF=0.5;AN=2;DP=1604;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:888,0,919:13,11,9,14
chr2	97829119	.	ATG	A	325.28	PASS	AC=1;AF=0.5;AN=2;DP=853;set=variant-variant2-variant4-variant5-variant6-variant8-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant20-variant22-filterInvariant23-variant25-variant28-variant31-variant32-variant34-variant35-variant37-filterInvariant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,7:38:99:105,0,1252:11,20,1,6
chr2	97829144	.	T	G	90.7	PASS	AC=1;AF=0.5;AN=2;DP=331;set=variant-filterInvariant8-variant11-variant14-variant15-filterInvariant22-variant25-filterInvariant26-variant32-variant34-variant35-variant37	GT:AD:DP:GQ:PL:SB	0/1:24,8:32:99:191,0,654:9,15,1,7
chr2	97830036	.	G	A	50.44	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;set=filterInvariant15-variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:22,8:30:79:79,0,659:18,4,4,4
chr2	97830053	.	A	G	75.77	PASS	AC=1;AF=0.5;AN=2;DP=1896;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant11-filterInvariant12-variant13-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,12:44:99:165,0,948:25,7,6,6
chr2	97833159	.	T	A	105.87	PASS	AC=1;AF=0.5;AN=2;DP=723;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:560,0,412:8,0,15,1
chr2	97833193	.	G	A	423.98	PASS	AC=1;AF=0.5;AN=2;DP=1938;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:13,34:47:99:920,0,261:10,3,25,9
chr2	97833215	.	T	C	1435.66	PASS	AC=1;AF=0.5;AN=2;DP=3179;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:15,56:71:99:2308,0,496:10,5,35,21
chr2	97833217	.	C	T	1435.66	PASS	AC=1;AF=0.5;AN=2;DP=3306;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:15,58:73:99:2308,0,496:10,5,36,22
chr2	97833342	.	G	A	546.62	PASS	AC=1;AF=0.5;AN=2;DP=3997;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:987,0,1135:25,26,14,33
chr2	97833361	.	A	G,C	84.78	PASS	AC=1,0;AF=0.488,0.012;AN=2;DP=2981;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:86:99:29,29,8,20
chr2	97833466	.	C	T	88.35	PASS	AC=1;AF=0.5;AN=2;DP=1233;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-filterInvariant7-variant8-filterInvariant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,11:41:99:305,0,724:10,20,10,1
chr2	97833553	.	C	T	218.8	PASS	AC=1;AF=0.511;AN=2;DP=722;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:2,15:17:15:340,0,15:0,2,7,8
chr2	97833567	.	A	G	214.68	PASS	AC=1;AF=0.512;AN=2;DP=674;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:195,0,228:1,5,2,5
chr2	97833569	.	C	T	214.68	PASS	AC=1;AF=0.523;AN=2;DP=694;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:26:412,0,26:0,2,3,8
chr2	97833583	.	C	T	223.72	PASS	AC=1;AF=0.523;AN=2;DP=668;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:29:357,0,29:0,2,1,9
chr2	97847606	.	A	G	653.01	PASS	AC=2;AF=0.795;AN=2;DP=905;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-filterInvariant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:679,63,0:0,0,10,11
chr2	97849219	.	T	C	816.64	PASS	AC=2;AF=0.788;AN=2;DP=1572;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1568,156,0:0,0,26,26
chr2	97851069	.	A	G	2389.73	PASS	AC=1;AF=0.7;AN=2;DP=3896;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,125:136:88:3235,0,88:6,5,72,53
chr2	97860487	.	T	C	2506.47	PASS	AC=1;AF=0.5;AN=2;DP=7120;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,138:187:99:3534,0,950:29,20,83,55
chr2	97862260	.	T	A	3299.91	PASS	AC=2;AF=0.932;AN=2;DP=3896;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3457,344,0:0,0,68,47
chr2	97862396	.	G	A	2047.84	PASS	AC=1;AF=0.5;AN=2;DP=6302;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,99:178:99:2538,0,1903:34,45,44,55
chr2	97864288	.	T	C	2756.12	PASS	AC=2;AF=0.788;AN=2;DP=4295;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3908,381,0:0,0,59,68
chr2	97864333	.	C	A	2716.77	PASS	AC=2;AF=0.788;AN=2;DP=3195;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3753,253,0:0,0,34,50
chr2	97864334	.	C	T	2716.77	PASS	AC=2;AF=0.788;AN=2;DP=3168;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3753,253,0:0,0,34,50
chr2	97864374	.	G	T	1382.59	PASS	AC=2;AF=0.788;AN=2;DP=2117;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1997,195,0:0,0,22,43
chr2	97866299	.	C	A	404.51	PASS	AC=1;AF=0.5;AN=2;DP=1385;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:313,0,700:2,18,2,8
chr2	97867870	.	G	C	2367.85	PASS	AC=2;AF=0.78;AN=2;DP=3470;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3253,291,0:0,0,67,30
chr2	97870051	.	G	A	308.41	PASS	AC=1;AF=0.5;AN=2;DP=1690;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,37:50:99:1016,0,383:4,9,15,22
chr2	97873515	.	C	T	843.92	PASS	AC=2;AF=0.788;AN=2;DP=1385;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1009,105,0:0,0,18,17
chr2	97873630	.	A	T	851.47	PASS	AC=2;AF=0.795;AN=2;DP=1245;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1128,114,0:0,0,19,19
chr2	97877292	.	C	A	2242.22	PASS	AC=2;AF=0.932;AN=2;DP=2890;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,85:86:99:2566,247,0:0,1,49,36
chr2	97877399	.	T	C	5181.84	PASS	AC=2;AF=0.932;AN=2;DP=6451;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4506,475,0:0,0,85,74
chr2	97877440	.	T	C	1817.69	PASS	AC=1;AF=0.526;AN=2;DP=6791;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,112:171:99:2658,0,1122:26,33,54,58
chr2	97877478	.	G	A	2345.21	PASS	AC=1;AF=0.5;AN=2;DP=5176;set=variant-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant36-variant38-filterInvariant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,49:155:99:923,0,2461:47,59,20,29
chr2	97909718	.	C	T	109.49	PASS	AC=1;AF=0.5;AN=2;DP=1058;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:99:150,0,240:3,3,2,0
chr2	97909719	.	A	G	106.48	PASS	AC=1;AF=0.5;AN=2;DP=1065;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:234,0,234:3,3,3,0
chr2	97909726	.	C	T	106.48	PASS	AC=1;AF=0.5;AN=2;DP=1132;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:234,0,234:3,3,5,1
chr2	97909727	.	A	G	106.48	PASS	AC=1;AF=0.5;AN=2;DP=1146;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:234,0,234:3,3,5,1
chr2	97909739	.	G	A	180	PASS	AC=1;AF=0.5;AN=2;DP=799;set=filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant10-filterInvariant11-variant15-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant25-filterInvariant26-variant27-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:225,0,184:4,4,7,3
chr2	97909803	.	CTT	C	202.48	PASS	AC=2;AF=0.511;AN=2;DP=1145;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:9:720,9,0:1,0,12,5
chr2	97909813	.	T	C	41.47	PASS	AC=1;AF=0.5;AN=2;DP=122;set=filterInvariant15-filterInvariant22-variant34-filterInvariant36-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:70:70,0,288:10,3,3,2
chr2	97909820	.	T	C	211.53	PASS	AC=1;AF=0.5;AN=2;DP=1165;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:1,17:18:22:708,0,22:1,0,12,5
chr2	97909822	.	C	A	211.53	PASS	AC=1;AF=0.5;AN=2;DP=1164;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:2,17:19:22:708,0,22:1,1,12,5
chr2	97909823	.	C	T	211.53	PASS	AC=1;AF=0.5;AN=2;DP=1164;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:2,17:19:22:708,0,22:1,1,12,5
chr2	97909839	.	C	T	569.36	PASS	AC=2;AF=0.512;AN=2;DP=1121;set=filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:2,17:19:7:371,7,0:1,1,12,5
chr2	97909853	.	G	A	212.34	PASS	AC=2;AF=0.511;AN=2;DP=943;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:9:720,9,0:0,1,12,5
chr2	97909857	.	G	A	212.34	PASS	AC=2;AF=0.511;AN=2;DP=872;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:9:720,9,0:0,1,12,5
chr2	97909862	.	A	G	154.63	PASS	AC=2;AF=0.512;AN=2;DP=749;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,16:17:6:675,6,0:0,1,11,5
chr2	98128135	.	G	A	2671.77	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=5507;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:107,97:204:99:4011,0,4213:66,41,77,20
chr2	98128143	.	T	C	3200.56	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=6729;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:114,127:241:99:5107,0,4268:68,46,89,38
chr2	98128150	.	G	A	1734.46	DRAGENHardSNP	AC=1;AF=0.568;AN=2;DP=8022;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:137,140:277:99:3729,0,4898:83,54,92,48
chr2	98128172	.	C	A	6271.77	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=11877;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:147,235:382:99:5763,0,2573:78,69,132,103
chr2	98128194	.	G	C	6766.77	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=13568;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:165,282:447:99:11344,0,6078:82,83,142,140
chr2	98128195	.	G	A	6766.77	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=13560;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:165,282:447:99:11344,0,6078:82,83,142,140
chr2	98128196	.	T	C	6766.77	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=13552;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:165,282:447:99:11344,0,6078:82,83,142,140
chr2	98128256	.	C	T	5956.77	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=11393;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:90,255:345:99:10293,0,2948:32,58,117,138
chr2	98128258	.	G	C	5911.77	DRAGENHardSNP	AC=1;AF=0.807;AN=2;DP=11097;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:87,249:336:99:10293,0,2948:30,57,111,138
chr2	98128300	.	A	G	834.32	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4463;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:122,34:156:99:487,0,3212:35,87,7,27
chr2	98128313	.	G	A	510.55	PASS	AC=1;AF=0.557;AN=2;DP=2487;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:35,53:88:99:1295,0,792:6,29,8,45
chr2	98128515	.	C	T	124.68	DRAGENHardSNP	AC=1;AF=0.536;AN=2;DP=581;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:219,0,477:7,4,3,3
chr2	98128520	.	G	A	124.68	DRAGENHardSNP	AC=1;AF=0.536;AN=2;DP=591;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:219,0,477:7,4,3,3
chr2	98128531	.	C	A	43.71	DRAGENHardSNP	AC=1;AF=0.539;AN=2;DP=537;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:118,0,238:7,4,3,3
chr2	98128574	.	C	T	40.72	DRAGENHardSNP	AC=1;AF=0.539;AN=2;DP=556;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:91:91,0,267:7,6,3,3
chr2	98129682	.	T	C	121.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1353;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:51,13:64:99:389,0,2276:28,23,8,5
chr2	98129683	.	G	A	121.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1358;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:52,13:65:99:389,0,2276:28,24,8,5
chr2	98129690	.	T	C	166.67	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1434;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:47,13:60:99:426,0,2161:25,22,8,5
chr2	98129691	.	G	A	166.67	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1436;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:47,14:61:99:432,0,2080:25,22,9,5
chr2	98129707	.	G	T	334.63	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1607;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:50,21:71:99:731,0,2110:26,24,12,9
chr2	98129716	.	A	G	370.59	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1647;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:48,22:70:99:792,0,2149:23,25,12,10
chr2	98129717	.	C	T	370.59	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1649;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:49,23:72:99:798,0,2106:23,26,12,11
chr2	98129731	.	C	T	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1717;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:51,23:74:99:812,0,2220:22,29,12,11
chr2	98129733	.	A	C	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1723;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:51,23:74:99:812,0,2220:22,29,12,11
chr2	98129734	.	T	C	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1730;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:51,23:74:99:812,0,2220:22,29,12,11
chr2	98129744	.	C	T	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1782;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:52,23:75:99:809,0,2242:22,30,12,11
chr2	98129817	.	T	C	31.68	DRAGENHardSNP	AC=1;AF=0.514;AN=2;DP=810;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:30,10:40:99:137,0,727:7,23,4,6
chr2	98164020	.	C	T	771.01	PASS	AC=1;AF=0.743;AN=2;DP=701;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:288,0,683:8,8,5,3
chr2	98164021	.	T	C	771.01	PASS	AC=1;AF=0.743;AN=2;DP=700;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:288,0,683:8,8,5,3
chr2	98164084	.	T	A	395.14	PASS	AC=1;AF=0.743;AN=2;DP=1081;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:397,0,399:7,9,9,9
chr2	98164184	.	C	G	1055.85	PASS	AC=1;AF=0.736;AN=2;DP=2030;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:851,0,602:16,13,19,19
chr2	98169583	.	G	T	239.21	PASS	AC=1;AF=0.75;AN=2;DP=795;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:309,0,308:7,4,8,4
chr2	98169742	.	A	C	942.28	PASS	AC=1;AF=0.736;AN=2;DP=1157;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:454,0,593:10,10,10,9
chr2	98173368	.	C	T	1740.66	PASS	AC=1;AF=0.743;AN=2;DP=1317;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:688,0,1176:13,11,11,8
chr2	98173369	.	A	G	1740.66	PASS	AC=1;AF=0.743;AN=2;DP=1329;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:688,0,1176:14,11,11,8
chr2	98177124	.	T	G	1948.72	PASS	AC=1;AF=0.736;AN=2;DP=2718;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,37:77:99:954,0,1020:26,14,20,17
chr2	98177305	.	C	G	232.58	PASS	AC=1;AF=0.833;AN=2;DP=263;FractionInformativeReads=1;set=variant-variant3-filterInvariant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:190,0,486:3,12,0,6
chr2	98196849	.	G	A	1276.77	PASS	AC=1;AF=0.736;AN=2;DP=1080;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:1139,0,1140:15,4,23,4
chr2	98196859	.	T	G	1338.26	PASS	AC=1;AF=0.736;AN=2;DP=1279;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:1307,0,1221:17,5,28,7
chr2	98205924	.	C	G	737.08	PASS	AC=1;AF=0.743;AN=2;DP=784;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:266,0,556:14,3,8,0
chr2	98206188	.	C	G	3652.09	PASS	AC=1;AF=0.743;AN=2;DP=5000;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,90:180:99:2331,0,2467:23,67,27,63
chr2	98264857	.	C	T	1439.99	PASS	AC=1;AF=0.736;AN=2;DP=1480;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:610,0,716:9,18,12,13
chr2	98272734	.	A	G	2417.07	PASS	AC=1;AF=0.825;AN=2;DP=3101;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1390,0,1216:27,18,27,23
chr2	98273290	.	C	T	3745.97	PASS	AC=1;AF=0.736;AN=2;DP=4601;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,82:151:99:2073,0,1703:40,29,41,41
chr2	98273661	.	A	G	738.33	PASS	AC=1;AF=0.813;AN=2;DP=1193;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:371,0,422:6,9,6,9
chr2	98274527	.	G	C	4909.86	PASS	AC=1;AF=0.813;AN=2;DP=8370;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,129:269:99:3194,0,3434:68,72,73,56
chr2	98276014	.	CCCTCACCTGCCCTGACCAGAA	C	1436.95	PASS	AC=1;AF=0.736;AN=2;DP=2826;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,31:73:99:1181,0,7599:5,37,3,28
chr2	98277128	.	T	A	2321.85	PASS	AC=1;AF=0.5;AN=2;DP=199;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.274;QD=11.67;ReadPosRankSum=1.365;SOR=0.679;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:102,97:199:99:2350,0,2292:48,54,46,51
chr2	98317685	.	G	A	1963.29	PASS	AC=1;AF=0.722;AN=2;DP=3654;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,65:129:99:1615,0,1599:31,33,25,40
chr2	98317771	.	C	A	739.7	PASS	AC=1;AF=0.825;AN=2;DP=1868;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:487,0,896:16,20,7,14
chr2	98330218	.	A	G	147.77	PASS	AC=1;AF=0.855;AN=2;DP=626;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:546,0,321:6,4,6,11
chr2	98340364	.	A	C	1174.51	PASS	AC=2;AF=0.878;AN=2;DP=2248;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1599,159,0:0,0,33,20
chr2	98341195	.	C	T	1120.14	PASS	AC=1;AF=0.5;AN=2;DP=1496;MQ=60;set=variant5-variant10-variant13-variant15-variant17-variant18-variant25-variant30-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:58,84:142:99:1783,0,1553:31,27,46,38
chr2	98341728	.	C	G	1109.97	PASS	AC=1;AF=0.5;AN=2;DP=1221;MQ=60;set=variant5-variant10-variant13-variant15-variant17-variant18-variant25-variant30-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:72,61:133:99:1506,0,1822:25,47,20,41
chr2	98356250	.	G	C	600.37	PASS	AC=2;AF=0.6;AN=2;DP=584;MQ=60;set=variant5-variant10-variant13-variant15-variant17-variant18-variant25-variant30-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2009,209,0:0,0,32,38
chr2	98373865	.	C	T	724.13	PASS	AC=2;AF=0.7;AN=2;DP=93;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant25-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:747,72,0:0,0,9,15
chr2	98376989	.	TA	T	224.27	PASS	AC=2;AF=0.863;AN=2;DP=494;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:425,39,0:0,0,13,0
chr2	98418812	.	CA	C	330.69	PASS	AC=2;AF=0.632;AN=2;DP=746;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:997,84,0:0,0,22,6
chr2	98449796	.	C	T	523.11	PASS	AC=2;AF=1;AN=2;DP=750;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.542;ReadPosRankSum=0.385;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:636,54,0:0,0,14,4
chr2	98453527	.	G	C	2827.09	PASS	AC=2;AF=0.7;AN=2;DP=537;MQ=60;set=variant13-variant15-variant25-variant37-variant38	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3534,320,0:1,0,69,52
chr2	98460441	.	TAG	T	217.55	PASS	AC=2;AF=0.685;AN=2;DP=234;MQ=60;set=variant4-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:330,24,0:0,0,5,3
chr2	98460742	.	G	A	193.94	PASS	AC=2;AF=0.648;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:600,51,0:0,0,5,12
chr2	98475979	.	C	T	225.93	PASS	AC=2;AF=0.645;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:731,60,0:0,0,4,16
chr2	98525107	.	T	C	2335.59	PASS	AC=2;AF=0.866;AN=2;DP=3185;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2390,246,0:0,0,35,47
chr2	98544058	.	T	C	134.92	PASS	AC=2;AF=0.667;AN=2;DP=366;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:949,84,0:0,0,7,21
chr2	98611833	.	T	C	501.44	PASS	AC=2;AF=0.875;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:318,33,0:0,0,7,4
chr2	98611994	.	G	T	1341.73	PASS	AC=2;AF=0.866;AN=2;DP=3016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2327,264,0:0,0,44,45
chr2	98612266	.	A	G	3462.48	PASS	AC=2;AF=0.866;AN=2;DP=5309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,158:159:99:4562,436,0:1,0,88,70
chr2	98703659	.	G	T	76.34	PASS	AC=1;AF=0.574;AN=2;DP=1372;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant2-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:897,0,607:17,11,20,15
chr2	98736225	.	C	T	1334.49	PASS	AC=1;AF=0.5;AN=2;DP=753;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant25-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,55:129:99:1363,0,1922:27,47,18,37
chr2	98795873	.	T	TG	6131.85	PASS	AC=1;AF=0.854;AN=2;DP=5943;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,107:204:99:3165,0,2831:44,53,45,62
chr2	98797744	.	C	T	1148.55	PASS	AC=1;AF=0.767;AN=2;DP=1653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:858,0,908:6,23,8,24
chr2	98804314	.	G	A	855.91	PASS	AC=1;AF=0.872;AN=2;DP=963;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:216,0,365:9,3,6,2
chr2	98811075	.	A	G	1340.37	PASS	AC=1;AF=0.86;AN=2;DP=1716;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,28:68:99:746,0,941:18,22,11,17
chr2	98833449	.	G	C,A	331.63	PASS	AC=1,0;AF=0.786,0.095;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant-variant20-variant21-variant29-variant23-variant42-variant24-variant43	GT:DP:GQ:SB	0/1:22:99:1,13,1,7
chr2	98844575	.	A	G	243.51	PASS	AC=1;AF=0.707;AN=2;DP=1050;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:278,0,551:14,3,8,2
chr2	98844674	.	C	G	1379.61	PASS	AC=1;AF=0.702;AN=2;DP=5520;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,70:152:99:1736,0,2071:48,34,45,25
chr2	98853173	.	G	A	1736.35	PASS	AC=1;AF=0.671;AN=2;DP=3704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1202,0,1398:23,31,16,31
chr2	98862097	.	A	G	852.69	PASS	AC=1;AF=0.802;AN=2;DP=2080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:652,0,794:8,21,7,17
chr2	98872662	.	C	CT,CTT	545.65	PASS	AC=1,0;AF=0.698,0.035;AN=2;DP=1751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:36:99:3,14,9,10
chr2	98887116	.	G	C	978.99	PASS	AC=1;AF=0.55;AN=2;DP=2069;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:866,0,862:24,8,21,13
chr2	98928494	.	G	A	2477.28	PASS	AC=2;AF=0.966;AN=2;DP=3758;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2946,257,0:0,0,48,38
chr2	98928929	.	A	G	1443.33	PASS	AC=1;AF=0.603;AN=2;DP=4342;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,118:193:99:2889,0,1759:33,42,56,62
chr2	98929209	.	A	T	3706.83	PASS	AC=1;AF=0.603;AN=2;DP=7985;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:152,169:321:99:4438,0,3782:91,61,102,67
chr2	98948224	.	C	A	1062.69	PASS	AC=1;AF=0.569;AN=2;DP=2999;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,75:140:99:1991,0,1777:21,44,25,50
chr2	98950659	.	T	C	163.47	PASS	AC=1;AF=0.571;AN=2;DP=594;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:408,0,531:9,9,11,3
chr2	98950731	.	CAAA	CAA,C,CAAAA	32.95	PASS	AC=1,0,0;AF=0.417,0.042,0.083;AN=2;DP=141;MQ=60;set=variant4-variant5-variant9-variant13-variant15-variant16-variant17-variant19-variant24-variant25-variant31-variant37	GT:DP:GQ:SB	0/1:11:38:2,1,4,4
chr2	98986510	.	T	C	1896.78	PASS	AC=1;AF=0.531;AN=2;DP=3071;MQ=60;set=variant2-variant4-variant9-variant14-variant15-variant16-variant17-variant20-variant22-variant25-variant26-variant28-variant31-variant35-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:118,97:215:99:2351,0,2780:60,58,54,43
chr2	98993635	.	A	G	46.75	PASS	AC=1;AF=0.682;AN=2;DP=323;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,162:4,1,2,0
chr2	98994309	.	T	G	485.78	PASS	AC=1;AF=0.5;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant15-variant26-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:514,0,534:11,6,5,11
chr2	98994414	.	T	C	1043.23	PASS	AC=1;AF=0.714;AN=2;DP=3117;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1330,0,1073:20,22,31,14
chr2	99135627	.	C	T	234.5	PASS	AC=2;AF=0.833;AN=2;DP=63;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant16-variant17-variant24-variant25-variant28-variant30-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:234,21,0:0,0,2,5
chr2	99136266	.	T	C	524.06	PASS	AC=2;AF=0.64;AN=2;DP=596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1030,81,0:0,0,24,3
chr2	99149946	.	G	A	1217.07	PASS	AC=2;AF=0.6;AN=2;DP=3508;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,158:159:99:4876,466,0:1,0,63,95
chr2	99154229	.	C	T	1228.51	PASS	AC=2;AF=0.62;AN=2;DP=2267;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3251,311,0:0,0,69,35
chr2	99160508	.	GCA	G	223.78	PASS	AC=2;AF=0.659;AN=2;DP=663;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1082,93,0:0,0,7,24
chr2	99163261	.	T	A	579.8	PASS	AC=2;AF=0.62;AN=2;DP=1614;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2249,213,0:0,0,25,46
chr2	99168953	.	T	C	234.68	PASS	AC=2;AF=0.976;AN=2;DP=266;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:211,18,0:0,0,6,0
chr2	99172244	.	A	G	171.9	PASS	AC=2;AF=0.62;AN=2;DP=2067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,100:101:99:3132,263,0:1,0,42,58
chr2	99181315	.	AT	A	2163.71	PASS	AC=2;AF=0.62;AN=2;DP=3681;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:6206,466,0:0,0,71,84
chr2	99193496	.	C	T	268.73	PASS	AC=2;AF=0.62;AN=2;DP=2010;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,86:87:99:2642,249,0:1,0,34,52
chr2	99204428	.	C	T	4153.96	PASS	AC=2;AF=0.6;AN=2;DP=5938;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,260:260:99:8858,778,0:0,0,105,155
chr2	99205962	.	T	C	4898.5	PASS	AC=2;AF=0.6;AN=2;DP=7848;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,356:356:99:10706,1065,0:0,0,193,163
chr2	99216531	.	A	G	721.65	PASS	AC=2;AF=0.6;AN=2;DP=1341;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2033,183,0:0,0,31,30
chr2	99216593	.	T	A	832.8	PASS	AC=2;AF=0.6;AN=2;DP=1504;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2813,234,0:0,0,48,30
chr2	99219071	.	T	C	80.46	PASS	AC=2;AF=0.595;AN=2;DP=208;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant20-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:570,42,0:0,0,12,2
chr2	99219206	.	T	A	284.5	PASS	AC=2;AF=0.6;AN=2;DP=1112;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,44:46:88:1253,88,0:1,1,19,25
chr2	99220707	.	T	C	345.25	PASS	AC=2;AF=0.6;AN=2;DP=705;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1211,114,0:0,0,12,26
chr2	99224998	.	C	G	2120.75	PASS	AC=2;AF=0.6;AN=2;DP=4822;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,259:259:99:8161,776,0:0,0,100,159
chr2	99225168	.	C	T	1635.7	PASS	AC=2;AF=0.6;AN=2;DP=3721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5100,510,0:0,0,87,84
chr2	99225645	.	T	C	577.56	PASS	AC=2;AF=0.6;AN=2;DP=1821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2531,261,0:0,0,42,45
chr2	99225766	.	TGATG	T	1102.53	PASS	AC=2;AF=0.6;AN=2;DP=1727;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3590,241,0:0,0,36,44
chr2	99226021	.	C	T	528.44	PASS	AC=2;AF=0.6;AN=2;DP=1218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1897,180,0:0,0,27,33
chr2	99226173	.	T	A	849.42	PASS	AC=2;AF=0.6;AN=2;DP=1905;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2874,269,0:0,0,55,35
chr2	99234586	.	A	AT	234.77	PASS	AC=1;AF=0.622;AN=2;DP=2188;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,47:54:10:986,0,10:6,1,35,12
chr2	99235055	.	A	G	106.77	PASS	AC=2;AF=0.778;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant9-variant15-variant16-variant29-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:128,9,0:0,0,0,3
chr2	99237439	.	A	G	2788.18	PASS	AC=2;AF=0.6;AN=2;DP=6175;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,317:317:99:9721,949,0:0,0,162,155
chr2	99237792	.	C	T	573.14	PASS	AC=2;AF=0.604;AN=2;DP=1514;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2877,243,0:0,0,43,38
chr2	99239164	.	T	C	557.63	PASS	AC=2;AF=0.611;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1569,153,0:0,0,20,31
chr2	99239269	.	C	T	518.72	PASS	AC=2;AF=0.611;AN=2;DP=529;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1058,107,0:0,0,13,23
chr2	99239497	.	G	A	72.4	PASS	AC=2;AF=0.643;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant14-variant15-variant16-variant17-variant20-variant25-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:385,30,0:0,0,8,2
chr2	99239931	.	C	T	687.32	PASS	AC=2;AF=0.611;AN=2;DP=1608;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3199,309,0:0,0,57,46
chr2	99240243	.	A	T	1453.16	PASS	AC=2;AF=0.611;AN=2;DP=3367;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5080,494,0:0,0,75,90
chr2	99272802	.	G	A	825.1	PASS	AC=2;AF=0.658;AN=2;DP=1418;MQ=60;set=variant2-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant28-variant30-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3010,298,0:0,0,60,40
chr2	99291196	.	A	T	289.62	PASS	AC=2;AF=0.64;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:748,60,0:0,0,17,3
chr2	99443369	.	T	TG	77.04	PASS	AC=2;AF=0.806;AN=2;DP=102;FS=0;MQ=60;set=variant2-variant3-variant13-variant14-variant15-variant18-variant22-variant25-variant29-variant30-variant31-variant33-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:96,12,0:0,0,4,0
chr2	99449174	.	C	T	181.05	PASS	AC=2;AF=0.682;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1600,120,0:0,0,26,14
chr2	99613924	.	C	T	6533.12	PASS	AC=2;AF=0.586;AN=2;DP=7055;MQ=60;set=variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,305:305:99:9101,911,0:0,0,120,185
chr2	99614396	.	G	T	10339.2	PASS	AC=2;AF=0.613;AN=2;DP=11319;MQ=60;set=variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,414:414:99:13244,1239,0:0,0,206,208
chr2	99651963	.	T	C	240.87	PASS	AC=1;AF=0.5;AN=2;DP=45;MQ=60;set=variant15-variant29-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:269,0,204:0,6,2,7
chr2	99695097	.	A	G	2807.27	PASS	AC=2;AF=0.6;AN=2;DP=2091;MQ=60;set=variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2977,284,0:0,0,61,34
chr2	99726043	.	A	G	4060.38	PASS	AC=2;AF=1;AN=2;DP=5295;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4610,467,0:0,0,59,97
chr2	99771681	.	G	C	873.65	PASS	AC=2;AF=0.588;AN=2;DP=564;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant13-variant14-variant15-variant16-variant19-variant21-variant23-variant25-variant28-variant31-variant32-variant33-variant35-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1154,102,0:0,0,16,18
chr2	99804642	.	T	C	2103.25	PASS	AC=2;AF=0.93;AN=2;DP=2491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2217,210,0:0,0,40,30
chr2	99859863	.	G	A	1504.02	PASS	AC=2;AF=0.575;AN=2;DP=1383;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant38	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2614,255,0:0,0,39,46
chr2	99859954	.	CAGATAGATAGATAGAT	CAGATAGATAGAT,CAGATAGATAGATAGATAGATAGAT,CAGATAGATAGATAGATAGAT,CAGATAGAT,C	212.98	PASS	AC=1,0,1,0,0;AF=0.286,0.143,0.4,0.014,0.014;AN=2;DP=885;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:12:99:0,0,1,11
chr2	99871370	.	G	A	54.21	PASS	AC=2;AF=0.821;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant15-variant20-variant22-variant23-variant25-variant31-variant35-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,6,3
chr2	99918077	.	A	G	106.77	PASS	AC=2;AF=0.959;AN=2;DP=295;set=variant-variant2-variant3-variant5-variant6-filterInvariant7-variant9-variant11-variant13-variant14-variant15-variant16-filterInvariant17-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant32-variant33-variant35-filterInvariant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:53:535,53,0:0,0,15,3
chr2	99923088	.	T	C	1145.68	PASS	AC=2;AF=0.919;AN=2;DP=1521;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1920,183,0:0,0,40,21
chr2	99938942	.	A	G	690.78	PASS	AC=2;AF=0.629;AN=2;DP=873;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1335,111,0:0,0,29,8
chr2	99939031	.	A	G	1240.93	PASS	AC=2;AF=0.629;AN=2;DP=3276;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:3911,409,0:0,0,81,56
chr2	99954608	.	A	G	805.63	PASS	AC=2;AF=0.609;AN=2;DP=1321;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2771,255,0:0,0,57,28
chr2	99954636	.	GT	G	1582.95	PASS	AC=2;AF=0.93;AN=2;DP=3443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3074,310,0:0,0,68,35
chr2	99988453	.	CA	C	161.26	PASS	AC=2;AF=0.708;AN=2;DP=442;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:342,30,0:0,0,1,9
chr2	99992822	.	A	C	388.73	PASS	AC=2;AF=0.697;AN=2;DP=835;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1197,99,0:0,0,26,7
chr2	99993019	.	A	G	595.75	PASS	AC=1;AF=0.5;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant17	GT:AD:DP:GQ:PL:SB	0/1:50,63:113:99:1442,0,1218:25,25,29,34
chr2	99995458	.	AT	A,ATT	50.99	PASS	AC=2,0;AF=0.594,0.016;AN=2;DP=456;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant44	GT:DP:GQ:SB	1/1:9:2:1,0,4,4
chr2	99995517	.	C	T	819.88	PASS	AC=2;AF=0.614;AN=2;DP=785;MQ=60;set=variant2-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1021,96,0:0,0,20,12
chr2	99995804	.	T	C	1453.33	PASS	AC=2;AF=0.692;AN=2;DP=6367;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5217,527,0:0,0,88,88
chr2	99998561	.	C	T	356.54	PASS	AC=2;AF=0.684;AN=2;DP=1004;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1089,96,0:0,0,24,8
chr2	100006620	.	G	T	794.64	PASS	AC=2;AF=0.679;AN=2;DP=1494;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1746,147,0:0,0,41,8
chr2	100006890	.	GT	GTT,G	276.2	PASS	AC=1,0;AF=0.473,0.027;AN=2;DP=3452;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:95:99:12,12,28,43
chr2	100016548	.	C	T	1794.8	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=0.772;FractionInformativeReads=1;MQ=60;MQRankSum=0.242;QD=14.24;ReadPosRankSum=0.568;SOR=0.823;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:62,64:126:99:1823,0,1802:16,46,15,49
chr2	100016713	.	G	C	301.15	PASS	AC=2;AF=0.629;AN=2;DP=985;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1171,108,0:0,0,19,17
chr2	100019496	.	A	G	1470.76	PASS	AC=2;AF=0.679;AN=2;DP=3017;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3057,309,0:0,0,45,58
chr2	100019612	.	TG	T	617.48	PASS	AC=2;AF=0.629;AN=2;DP=1106;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1307,105,0:0,0,10,25
chr2	100021184	.	A	G	1393.87	PASS	AC=2;AF=0.629;AN=2;DP=3196;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3056,288,0:0,0,37,59
chr2	100022270	.	G	A	93.2	PASS	AC=2;AF=0.661;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:359,33,0:0,0,8,3
chr2	100022772	.	T	C	1129.84	PASS	AC=2;AF=0.629;AN=2;DP=3073;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3534,336,0:0,0,70,42
chr2	100055506	.	A	G	868.59	PASS	AC=2;AF=0.679;AN=2;DP=2415;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2885,264,0:0,0,42,46
chr2	100058714	.	CAAA	CAAAAA,CAAAAAA,CAAAAAAA,CAAAA,CAA,C	42.4	PASS	AC=1,0,0,0,0,0;AF=0.214,0.095,0.024,0.119,0.048,0.024;AN=2;DP=411;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant13-variant15-variant19-variant22-variant24-variant25-variant26-variant29-variant33-variant35-variant37-variant38-variant42-variant43	GT:DP:GQ:SB	0/1:16:7:2,0,8,6
chr2	100058870	.	C	T	1052.61	PASS	AC=2;AF=0.609;AN=2;DP=2281;MQ=60;set=variant-variant2-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant38-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3454,353,0:0,0,59,59
chr2	100068069	.	T	C	143.08	PASS	AC=2;AF=0.647;AN=2;DP=828;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:864,72,0:0,0,5,19
chr2	100081323	.	C	T	538.4	PASS	AC=2;AF=0.679;AN=2;DP=2536;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2115,216,0:0,0,45,27
chr2	100081561	.	A	AAAGTC	524.02	PASS	AC=2;AF=0.719;AN=2;DP=318;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,0,11
chr2	100106547	.	C	CCGGCCCCGCCCACGCCCCCTCCG,CCGGCCCCGCCCAGGCCCCCTCCG	184.98	PASS	AC=2,0;AF=0.712,0.038;AN=2;DP=227;MQ=60;set=variant2-variant3-variant5-variant8-variant11-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:10:36:0,0,3,7
chr2	100167615	.	GGTGT	G,GGTGTGT,GGT	121.6	PASS	AC=2,0,0;AF=0.52,0.08,0.12;AN=2;DP=254;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant19-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant43	GT:DP:GQ:SB	1/1:17:51:0,0,10,7
chr2	100343557	.	C	T	3142.78	PASS	AC=2;AF=1;AN=2;DP=4881;FS=0;MQ=60;MQRankSum=-0.917;ReadPosRankSum=1.703;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3830,375,0:0,0,58,67
chr2	100454072	.	C	CT	2365.07	PASS	AC=2;AF=0.825;AN=2;DP=3134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:4139,315,0:0,0,43,62
chr2	100721050	.	A	G	231.69	PASS	AC=1;AF=0.685;AN=2;DP=296;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:68:192,0,68:0,4,1,5
chr2	100891976	.	C	T	839.2	PASS	AC=1;AF=0.86;AN=2;DP=1930;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:529,0,864:17,13,12,10
chr2	100892018	.	G	A	1053.24	PASS	AC=1;AF=0.667;AN=2;DP=1376;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,24:65:99:497,0,1091:25,16,13,11
chr2	100892516	.	C	T	1930.17	PASS	AC=1;AF=0.721;AN=2;DP=2937;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,53:100:99:1401,0,1307:15,32,21,32
chr2	100892874	.	G	A	1173.12	PASS	AC=1;AF=0.5;AN=2;DP=1361;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant15-variant16-variant22-variant25-variant29-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,66:139:99:1732,0,1817:31,42,30,36
chr2	100893113	.	C	A	4496.03	PASS	AC=1;AF=0.721;AN=2;DP=7617;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,88:210:99:1628,0,3019:53,69,35,53
chr2	100894114	.	C	G	1774.15	PASS	AC=1;AF=0.707;AN=2;DP=2645;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:1548,0,1501:15,15,18,22
chr2	100894115	.	T	C	1774.15	PASS	AC=1;AF=0.707;AN=2;DP=2661;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:1548,0,1501:16,15,18,20
chr2	100894491	.	C	A	1983.98	PASS	AC=1;AF=0.667;AN=2;DP=1828;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:981,0,1142:21,20,19,20
chr2	100894802	.	C	G	3136.03	PASS	AC=1;AF=0.709;AN=2;DP=4063;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1654,0,1208:23,27,25,37
chr2	100894887	.	C	T	1658.4	PASS	AC=1;AF=0.707;AN=2;DP=2238;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:781,0,721:10,15,10,19
chr2	100895081	.	G	A	1553.35	PASS	AC=1;AF=0.675;AN=2;DP=2450;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,48:81:99:1221,0,745:16,17,24,24
chr2	100895784	.	ACC	AC,A	1255.44	PASS	AC=1,0;AF=0.726,0.012;AN=2;DP=3418;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:83:99:13,11,31,28
chr2	100895872	.	G	A	2318.19	PASS	AC=1;AF=0.725;AN=2;DP=3810;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,60:116:99:1801,0,1505:27,29,27,33
chr2	100896110	.	T	C	3216.09	PASS	AC=1;AF=0.725;AN=2;DP=2807;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:1636,0,2185:19,21,15,27
chr2	100896112	.	C	T	3216.09	PASS	AC=1;AF=0.725;AN=2;DP=2780;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,41:81:99:1636,0,2234:19,21,14,27
chr2	100896242	.	A	G	1612.02	PASS	AC=1;AF=0.725;AN=2;DP=2691;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,18:58:99:384,0,1073:18,22,9,9
chr2	100896311	.	G	T	1891.03	PASS	AC=1;AF=0.725;AN=2;DP=2983;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:962,0,947:20,17,16,16
chr2	100896376	.	G	C	1550.22	PASS	AC=1;AF=0.725;AN=2;DP=2457;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:628,0,767:14,19,14,14
chr2	100896415	.	C	T	1837.96	PASS	AC=1;AF=0.725;AN=2;DP=2255;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:815,0,854:13,20,16,18
chr2	100896512	.	G	A	1501.15	PASS	AC=1;AF=0.725;AN=2;DP=2041;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:745,0,581:15,9,15,15
chr2	100896964	.	A	G	331.77	PASS	AC=1;AF=0.738;AN=2;DP=533;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,246:2,4,2,3
chr2	100896966	.	G	A	331.77	PASS	AC=1;AF=0.725;AN=2;DP=498;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,246:2,4,2,3
chr2	100897008	.	C	T	112.51	PASS	AC=1;AF=0.742;AN=2;DP=232;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:63:63,0,121:1,2,1,1
chr2	100897214	.	G	A	2117.35	PASS	AC=1;AF=0.725;AN=2;DP=2072;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,22:57:99:561,0,1123:28,7,15,7
chr2	100897351	.	T	A	8594.84	PASS	AC=1;AF=0.725;AN=2;DP=11946;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:196,146:342:99:3348,0,4856:101,95,87,59
chr2	100897573	.	G	A	8689	PASS	AC=1;AF=0.725;AN=2;DP=12602;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,172:362:99:4304,0,4796:83,107,74,98
chr2	100897674	.	T	A	5188.8	PASS	AC=1;AF=0.744;AN=2;DP=6311;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,85:176:99:2280,0,2496:42,49,36,49
chr2	100897739	.	GTTTT	G	5160.92	PASS	AC=1;AF=0.725;AN=2;DP=5034;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,70:157:99:2589,0,3353:46,41,37,33
chr2	100898634	.	G	T	1281.89	PASS	AC=1;AF=0.725;AN=2;DP=2012;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:1024,0,1013:14,23,17,17
chr2	100899258	.	GAAAACTAAAAGAAAAATTAATAATATTATAA	G	447.44	PASS	AC=1;AF=0.75;AN=2;DP=4370;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,14:75:99:377,0,2873:14,47,3,11
chr2	100899292	.	TCTTTATCTACTGAAACTAC	T	453.26	PASS	AC=1;AF=0.744;AN=2;DP=3750;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,14:60:99:456,0,2306:12,34,3,11
chr2	100899328	.	T	TA	393.96	PASS	AC=1;AF=0.744;AN=2;DP=2653;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,15:52:99:456,0,1612:10,27,3,12
chr2	100899665	.	G	A	7126.25	PASS	AC=1;AF=0.725;AN=2;DP=8954;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,128:235:99:3287,0,2790:65,42,74,54
chr2	100899676	.	T	C	8273.52	PASS	AC=1;AF=0.725;AN=2;DP=10125;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,139:257:99:3558,0,2974:73,45,82,57
chr2	100900038	.	AAT	AATAT,A	2418.99	PASS	AC=1,0;AF=0.488,0.012;AN=2;DP=6076;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:124:99:37,64,10,13
chr2	100900304	.	T	C	1813.59	PASS	AC=1;AF=0.738;AN=2;DP=2595;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,52:93:99:1303,0,1060:20,21,23,29
chr2	100900406	.	G	A	1564.56	PASS	AC=1;AF=0.744;AN=2;DP=3246;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1118,0,1227:22,28,22,23
chr2	100915629	.	T	C	1913.99	PASS	AC=1;AF=0.726;AN=2;DP=2774;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,45:78:99:1159,0,999:26,7,28,17
chr2	100915772	.	A	G	2008.14	PASS	AC=1;AF=0.726;AN=2;DP=2794;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:925,0,1182:15,29,11,25
chr2	100916306	.	A	G	1103.52	PASS	AC=1;AF=0.726;AN=2;DP=1913;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,33:69:99:1246,0,1699:14,22,14,19
chr2	100916315	.	A	G	1065.74	PASS	AC=1;AF=0.645;AN=2;DP=1231;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:1265,0,1718:14,21,13,20
chr2	100917109	.	C	T	4540.88	PASS	AC=1;AF=0.683;AN=2;DP=3923;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,83:180:99:1852,0,2602:52,45,42,41
chr2	100925803	.	A	G	156.17	PASS	AC=1;AF=0.759;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:35:85,0,35:1,1,2,1
chr2	100925934	.	C	A	169.59	PASS	AC=1;AF=0.717;AN=2;DP=689;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:210,0,302:7,5,6,5
chr2	100938226	.	G	C	336.35	PASS	AC=1;AF=0.731;AN=2;DP=366;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:137,0,261:1,7,0,4
chr2	100938481	.	C	G	880.07	PASS	AC=1;AF=0.7;AN=2;DP=1419;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1029,0,793:18,17,27,16
chr2	100938917	.	G	C	4295.11	PASS	AC=1;AF=0.683;AN=2;DP=5991;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,99:230:99:2361,0,3356:60,71,53,46
chr2	100938952	.	T	C	4531.6	PASS	AC=1;AF=0.7;AN=2;DP=5951;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,100:219:99:2230,0,2979:51,68,54,46
chr2	100939117	.	A	G	2831.26	PASS	AC=1;AF=0.719;AN=2;DP=3479;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,60:118:99:1587,0,1304:26,32,29,31
chr2	100986964	.	A	C	1780.38	PASS	AC=1;AF=0.762;AN=2;DP=1855;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:554,0,616:7,16,3,15
chr2	101009326	.	T	C	1246.71	PASS	AC=1;AF=0.727;AN=2;DP=1761;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:822,0,540:9,13,14,17
chr2	101009600	.	G	A	1830.36	PASS	AC=1;AF=0.717;AN=2;DP=2134;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,59:110:99:1417,0,1332:25,26,32,27
chr2	101010082	.	G	C	6128.22	PASS	AC=1;AF=0.727;AN=2;DP=6206;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,111:225:99:2807,0,2590:49,65,49,62
chr2	101011724	.	C	T	740.29	PASS	AC=1;AF=0.721;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:282,0,482:12,7,8,4
chr2	101011877	.	T	C	3378.2	PASS	AC=1;AF=0.717;AN=2;DP=2822;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,71:113:99:1867,0,1136:29,13,43,28
chr2	101014247	.	C	A	503.73	PASS	AC=1;AF=0.734;AN=2;DP=711;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:279,0,560:14,4,8,2
chr2	101014363	.	C	T	2856.79	PASS	AC=1;AF=0.707;AN=2;DP=2909;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1402,0,1375:28,26,36,15
chr2	101022886	.	C	T	946.53	PASS	AC=1;AF=0.717;AN=2;DP=660;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:490,0,196:5,3,13,2
chr2	101031499	.	G	A	875.46	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=1.975;FractionInformativeReads=1;MQ=60;MQRankSum=-2.262;QD=12.33;ReadPosRankSum=-0.294;SOR=0.448;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:904,0,828:14,20,18,19
chr2	101031561	.	G	T	1301.64	PASS	AC=1;AF=0.707;AN=2;DP=1366;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:475,0,592:9,13,10,11
chr2	101033697	.	G	A	328.13	PASS	AC=1;AF=0.714;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:199,0,147:1,3,3,3
chr2	101033756	.	C	T	306.41	PASS	AC=1;AF=0.907;AN=2;DP=736;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:368,0,257:6,4,8,6
chr2	101086894	.	G	A	1316.68	PASS	AC=1;AF=0.542;AN=2;DP=1780;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:94,93:187:99:2251,0,2463:66,28,58,35
chr2	101086966	.	C	T	3305.83	PASS	AC=1;AF=0.542;AN=2;DP=3605;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:170,182:352:99:4243,0,4017:99,71,96,86
chr2	101087104	.	C	T	2467.02	PASS	AC=1;AF=0.542;AN=2;DP=2025;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:78,86:164:99:2423,0,2343:21,57,26,60
chr2	101087191	.	G	C	970.63	PASS	AC=1;AF=0.542;AN=2;DP=760;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:927,0,840:14,19,13,22
chr2	101087295	.	T	C	220.35	PASS	AC=1;AF=0.542;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:335,0,489:4,4,3,7
chr2	101087303	.	A	G	201.62	PASS	AC=1;AF=0.542;AN=2;DP=189;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:183,0,526:4,5,2,3
chr2	101093556	.	T	C	135.15	PASS	AC=1;AF=0.542;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:282,0,145:4,1,6,3
chr2	101095733	.	A	G	665.94	PASS	AC=1;AF=0.536;AN=2;DP=1066;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:997,0,999:24,15,23,16
chr2	101096802	.	A	G	886.78	PASS	AC=1;AF=0.536;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,27:83:99:597,0,1360:27,29,16,11
chr2	101096834	.	C	A	755.13	PASS	AC=1;AF=0.542;AN=2;DP=1229;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:920,0,1484:27,29,22,19
chr2	101096860	.	T	C	1076.58	PASS	AC=1;AF=0.536;AN=2;DP=1583;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:1297,0,1567:31,35,29,25
chr2	101096903	.	T	C	811.2	PASS	AC=1;AF=0.542;AN=2;DP=1382;MQ=60;set=variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,59:123:99:1474,0,1504:30,34,31,28
chr2	101096960	.	C	T	2216.69	PASS	AC=1;AF=0.71;AN=2;DP=2445;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1127,0,984:20,23,20,29
chr2	101126124	.	T	A	7735.36	PASS	AC=1;AF=0.898;AN=2;DP=11299;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:140,146:286:99:3655,0,3444:59,81,58,88
chr2	101179122	.	T	G	288.06	PASS	AC=1;AF=0.615;AN=2;DP=1003;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,13:47:99:347,0,1058:24,10,11,2
chr2	101179341	.	A	G	8513.93	PASS	AC=1;AF=0.672;AN=2;DP=7874;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,152:283:99:5915,0,7080:71,60,82,70
chr2	101179342	.	G	A	8513.93	PASS	AC=1;AF=0.648;AN=2;DP=6679;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:132,153:285:99:5915,0,7080:71,61,82,71
chr2	101185189	.	T	G	7415.14	PASS	AC=1;AF=0.656;AN=2;DP=6275;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,143:279:99:4034,0,4001:104,32,103,40
chr2	101186088	.	C	T	4347.28	PASS	AC=1;AF=0.643;AN=2;DP=2766;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,64:145:99:1767,0,2470:39,42,29,35
chr2	101188373	.	C	CCTGTGTATGAGTGA	8869.76	PASS	AC=1;AF=0.643;AN=2;DP=5388;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,110:237:99:4147,0,6166:59,68,55,55
chr2	101193133	.	CT	C	47.33	PASS	AC=1;AF=0.911;AN=2;DP=200;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:51:193,0,51:1,2,4,4
chr2	101437561	.	G	A	1086.07	PASS	AC=2;AF=0.577;AN=2;DP=1296;MQ=60;set=variant8-variant10-variant15-variant18-variant20-variant26-variant29-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3319,321,0:0,0,52,55
chr2	101437601	.	C	G	1213.12	PASS	AC=2;AF=0.577;AN=2;DP=1377;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant15-variant18-variant20-variant26-variant29-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3075,317,0:0,0,50,56
chr2	101437762	.	A	G	525.04	PASS	AC=2;AF=0.577;AN=2;DP=489;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant15-variant18-variant20-variant26-variant29-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1381,129,0:0,0,19,24
chr2	101520972	.	A	AT	432.93	PASS	AC=2;AF=0.907;AN=2;DP=675;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:603,45,0:0,0,12,3
chr2	101521173	.	ATTT	AT,ATT,A,ATTTT	665.56	PASS	AC=1,0,0,0;AF=0.337,0.302,0.012,0.012;AN=2;DP=2101;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:37:99:5,6,9,17
chr2	101541798	.	C	T	1986.79	PASS	AC=2;AF=0.932;AN=2;DP=3552;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2496,245,0:0,0,33,49
chr2	101541872	.	C	T	403.2	PASS	AC=1;AF=0.5;AN=2;DP=561;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant23-variant24-variant26-variant27-variant30-variant31-variant33	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:634,0,433:3,12,3,17
chr2	101564628	.	A	G,C	1270.53	PASS	AC=1,0;AF=0.646,0.049;AN=2;DP=3877;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:98:99:30,19,29,20
chr2	101566070	.	C	T	670.34	PASS	AC=1;AF=0.689;AN=2;DP=1749;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,35:69:99:1009,0,901:11,23,10,25
chr2	101580575	.	G	A	851.55	PASS	AC=1;AF=0.5;AN=2;DP=1279;MQ=60;set=variant2-variant3-variant9-variant10-variant15-variant16-variant18-variant24-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1182,0,1137:24,21,26,22
chr2	101581246	.	C	T	2324.75	PASS	AC=2;AF=0.898;AN=2;DP=3276;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2714,266,0:0,0,52,37
chr2	101581934	.	CA	C	263.05	PASS	AC=1;AF=0.75;AN=2;DP=1072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:498,0,362:13,4,15,8
chr2	101581976	.	A	G	722.4	PASS	AC=2;AF=0.786;AN=2;DP=1912;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2624,237,0:0,0,51,28
chr2	101591304	.	A	G	885.05	PASS	AC=1;AF=0.75;AN=2;DP=4365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,68:135:99:1641,0,1518:31,36,31,37
chr2	101594191	.	C	T	2547.36	PASS	AC=1;AF=0.5;AN=2;DP=3601;MQ=60;set=variant2-variant3-variant9-variant10-variant15-variant16-variant18-variant24-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:146,125:271:99:3114,0,3595:65,81,65,60
chr2	101598677	.	C	T	1924.07	PASS	AC=1;AF=0.553;AN=2;DP=2861;MQ=60;set=variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,89:177:99:2150,0,2123:50,38,52,37
chr2	101609827	.	C	T	1588.85	PASS	AC=1;AF=0.62;AN=2;DP=5287;MQ=60;set=variant-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:125,116:241:99:2486,0,3004:64,61,60,56
chr2	101612051	.	G	A	1397.2	PASS	AC=1;AF=0.595;AN=2;DP=1639;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1365,0,1214:14,26,20,23
chr2	101612568	.	C	T	1872.74	PASS	AC=1;AF=0.64;AN=2;DP=2981;MQ=60;set=variant-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,53:140:99:1946,0,3454:47,40,31,22
chr2	101612584	.	T	A	1847.47	PASS	AC=1;AF=0.655;AN=2;DP=3650;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,60:149:99:2112,0,3479:47,42,34,26
chr2	101612615	.	T	C	3364.14	PASS	AC=2;AF=0.788;AN=2;DP=5210;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:3987,419,0:0,0,76,64
chr2	101613409	.	A	T	49.76	PASS	AC=1;AF=0.673;AN=2;DP=204;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:105,0,110:0,3,2,3
chr2	101618219	.	A	G	1033.54	PASS	AC=1;AF=0.596;AN=2;DP=2511;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,31:89:99:680,0,1396:31,27,17,14
chr2	101619283	.	C	G	6194.7	PASS	AC=2;AF=0.893;AN=2;DP=9830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,289:289:99:8331,865,0:0,0,155,134
chr2	101619321	.	T	C	6491.53	PASS	AC=2;AF=0.813;AN=2;DP=9996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,313:313:99:9142,937,0:0,0,155,158
chr2	101620856	.	TAA	TA,T	1129.58	PASS	AC=1,0;AF=0.571,0.024;AN=2;DP=2222;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:100:99:21,29,22,28
chr2	101621569	.	C	T	437.25	PASS	AC=1;AF=0.595;AN=2;DP=908;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:577,0,713:14,14,11,9
chr2	101622696	.	T	TG	4611.88	PASS	AC=1;AF=0.595;AN=2;DP=7336;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,232:389:99:6607,0,4181:82,75,121,111
chr2	101622728	.	C	T	3913.11	PASS	AC=1;AF=0.64;AN=2;DP=8701;MQ=60;set=variant-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:254,165:419:99:3706,0,6216:123,131,84,81
chr2	101623611	.	A	C	1438.12	PASS	AC=1;AF=0.556;AN=2;DP=1180;MQ=60;set=variant10-variant13-variant15-variant16-variant24-variant26-variant27-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,68:159:99:1746,0,2208:47,44,39,29
chr2	101623745	.	T	A	911.42	PASS	AC=1;AF=0.64;AN=2;DP=1799;MQ=60;set=variant-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:1069,0,1123:13,30,14,27
chr2	101624471	.	T	C	3944.6	PASS	AC=2;AF=0.788;AN=2;DP=8071;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8559,846,0:0,0,142,140
chr2	101627343	.	CA	C,CAA	475.37	PASS	AC=1,0;AF=0.52,0.02;AN=2;DP=984;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-filterInvariant21-variant24-variant25-variant26-variant27-variant28-filterInvariant32-variant36-variant37-variant39-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/1:45:99:18,11,10,6
chr2	101627852	.	C	T	192.16	PASS	AC=1;AF=0.595;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:533,0,250:7,3,13,4
chr2	101634793	.	GTTCA	G	1279.27	PASS	AC=1;AF=0.64;AN=2;DP=1485;MQ=60;set=variant-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:1280,0,1322:2,22,5,28
chr2	101635538	.	C	T	707.23	PASS	AC=1;AF=0.64;AN=2;DP=1769;set=variant-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,48:81:99:1247,0,834:14,19,29,19
chr2	101638888	.	A	G	2440.5	PASS	AC=2;AF=0.825;AN=2;DP=4364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3773,380,0:0,0,68,59
chr2	101644855	.	G	A	1456.57	PASS	AC=1;AF=0.64;AN=2;DP=3808;set=variant-variant2-variant4-variant5-variant8-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,76:158:99:1829,0,2016:45,37,43,33
chr2	101646144	.	G	A	1631.89	PASS	AC=1;AF=0.6;AN=2;DP=3454;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,85:191:99:1900,0,2581:50,56,35,50
chr2	101646359	.	G	C	38.97	PASS	AC=1;AF=0.64;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:437,0,176:2,5,2,11
chr2	101652732	.	C	T	710.33	PASS	AC=1;AF=0.654;AN=2;DP=1241;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:959,0,1137:6,30,5,25
chr2	101656726	.	T	C	1386.51	PASS	AC=2;AF=0.788;AN=2;DP=4498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:3920,403,0:0,0,59,76
chr2	101675808	.	A	G	625.78	PASS	AC=1;AF=0.643;AN=2;DP=1100;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:486,0,816:18,12,13,7
chr2	101869226	.	C	T	672.01	PASS	AC=1;AF=0.55;AN=2;DP=461;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant15-variant19-variant20-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:646,0,835:16,11,13,12
chr2	101869588	.	G	T	1618.39	PASS	AC=1;AF=0.7;AN=2;DP=3894;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant24-variant27-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,97:204:99:2109,0,2596:66,41,54,43
chr2	101870073	.	T	C	395.69	PASS	AC=1;AF=0.533;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant11-variant12-variant15-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:429,0,601:2,16,5,10
chr2	101874442	.	C	T	1053.03	PASS	AC=1;AF=0.7;AN=2;DP=2708;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant24-variant27-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,63:156:99:1405,0,2224:42,51,26,37
chr2	101878882	.	C	T	145.63	PASS	AC=1;AF=0.5;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant15-variant20-variant36-variant37-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:397,0,360:9,1,11,1
chr2	101881549	.	A	T	443.57	PASS	AC=1;AF=0.674;AN=2;DP=482;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant20-variant21-variant24-variant27-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:258,0,179:2,5,3,9
chr2	101883027	.	T	C	247.6	PASS	AC=1;AF=0.563;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:438,0,523:7,1,8,2
chr2	101883046	.	A	G	347.03	PASS	AC=1;AF=0.672;AN=2;DP=605;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:452,0,641:9,1,9,4
chr2	101889306	.	A	G	508.4	PASS	AC=1;AF=0.7;AN=2;DP=866;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant24-variant27-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:710,0,437:10,5,17,7
chr2	101898412	.	G	C	2408.65	PASS	AC=2;AF=0.864;AN=2;DP=3273;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2109,218,0:0,0,41,32
chr2	101911385	.	A	G	594.99	PASS	AC=1;AF=0.7;AN=2;DP=1428;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant24-variant27-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,38:76:99:989,0,1066:27,11,27,11
chr2	101925026	.	T	C	4044.61	PASS	AC=1;AF=0.672;AN=2;DP=10006;MQ=60;set=variant2-variant3-variant5-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:194,142:336:99:3506,0,5363:77,117,56,86
chr2	101965113	.	T	C	1528.86	PASS	AC=2;AF=0.738;AN=2;DP=1584;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1649,147,0:0,0,38,11
chr2	101965145	.	T	A	4320.57	PASS	AC=2;AF=0.72;AN=2;DP=3232;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3852,271,0:0,0,68,21
chr2	101965146	.	T	A	4320.15	PASS	AC=2;AF=0.762;AN=2;DP=3373;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3852,271,0:0,0,69,21
chr2	101965367	.	G	A	9391	PASS	AC=2;AF=0.909;AN=2;DP=9558;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,222:222:99:7719,666,0:0,0,101,121
chr2	101965448	.	A	T	7760.65	PASS	AC=2;AF=0.738;AN=2;DP=7368;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:6890,669,0:0,0,104,120
chr2	101965864	.	C	T	4487.28	PASS	AC=2;AF=0.738;AN=2;DP=5296;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5446,495,0:0,0,103,62
chr2	101966038	.	C	A	3631.37	PASS	AC=1;AF=0.577;AN=2;DP=8525;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant15-variant16-variant19-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:225,162:387:99:3907,0,5745:109,116,74,88
chr2	101967058	.	TC	T	7898.16	PASS	AC=2;AF=0.738;AN=2;DP=13040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:12,314:326:99:8347,640,0:8,4,147,167
chr2	101967346	.	C	T	4429.85	PASS	AC=2;AF=0.738;AN=2;DP=4374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3952,341,0:0,0,59,55
chr2	101971618	.	T	C	333.34	PASS	AC=1;AF=0.593;AN=2;DP=477;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:259,0,108:2,2,7,0
chr2	102000210	.	G	A	727.75	PASS	AC=1;AF=0.577;AN=2;DP=1118;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant15-variant16-variant19-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:486,0,453:6,12,6,12
chr2	102003962	.	T	C	1046.36	PASS	AC=1;AF=0.583;AN=2;DP=1109;MQ=60;set=variant3-variant5-variant6-variant9-variant11-variant12-variant15-variant16-variant19-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:921,0,786:6,20,10,21
chr2	102018908	.	A	G	4004.91	PASS	AC=2;AF=0.681;AN=2;DP=4891;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5517,526,0:0,0,85,91
chr2	102031176	.	A	G	1275.61	PASS	AC=2;AF=0.989;AN=2;DP=1445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1405,116,0:0,0,33,6
chr2	102031489	.	C	G	2040.65	PASS	AC=2;AF=0.821;AN=2;DP=2442;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2806,264,0:0,0,29,59
chr2	102035192	.	C	T	1761.03	PASS	AC=2;AF=0.821;AN=2;DP=2417;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1442,137,0:0,0,22,24
chr2	102038849	.	T	A	5254.03	PASS	AC=2;AF=0.989;AN=2;DP=7316;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:6739,694,0:0,0,107,125
chr2	102045328	.	C	T	1654.14	PASS	AC=1;AF=0.742;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:625,0,587:16,5,16,5
chr2	102066878	.	A	T	141.1	PASS	AC=1;AF=0.866;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:19:166,0,19:1,0,3,2
chr2	102066927	.	C	T	410.97	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.091;QD=29.36;ReadPosRankSum=-1.369;SOR=0.307;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:2,12:14:45:439,0,45:2,0,8,4
chr2	102066981	.	C	T	529.28	PASS	AC=1;AF=0.563;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant12-variant14-variant15-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:445,0,587:14,7,12,5
chr2	102067083	.	T	C	1790.74	PASS	AC=1;AF=0.857;AN=2;DP=2931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1057,0,1042:24,24,21,23
chr2	102083183	.	T	C	2159.24	PASS	AC=1;AF=0.73;AN=2;DP=1966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:848,0,786:21,10,23,13
chr2	102090985	.	C	G	768.54	PASS	AC=1;AF=0.563;AN=2;DP=351;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant8-variant11-variant12-variant14-variant15-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:606,0,599:15,4,15,5
chr2	102091075	.	G	A	1340.18	PASS	AC=1;AF=0.716;AN=2;DP=3741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,82:143:99:1909,0,1360:31,30,43,39
chr2	102314391	.	C	CCCG	1387.15	PASS	AC=1;AF=0.646;AN=2;DP=1176;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant33-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:1049,0,906:19,5,20,6
chr2	102314437	.	T	C	1986.88	PASS	AC=2;AF=0.782;AN=2;DP=5584;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4879,445,0:0,0,102,47
chr2	102314633	.	G	GGGCAGCC	1190.75	PASS	AC=1;AF=0.559;AN=2;DP=1981;MQ=60;set=variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant15-variant26-variant29-variant30-variant35-variant36-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:1100,0,1945:6,28,5,24
chr2	102315057	.	A	G	285.44	PASS	AC=1;AF=0.553;AN=2;DP=534;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant15-variant26-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:468,0,466:6,12,8,13
chr2	102440723	.	G	A	211.36	PASS	AC=2;AF=0.888;AN=2;DP=394;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:26:250,26,0:0,0,4,5
chr2	102459268	.	A	G	748.21	PASS	AC=1;AF=0.5;AN=2;DP=683;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant11-variant15-variant26-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:779,0,757:8,19,8,20
chr2	102477453	.	C	T	726.41	PASS	AC=1;AF=0.5;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant26-variant29	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:936,0,629:8,16,6,25
chr2	102483883	.	T	G	370.36	PASS	AC=1;AF=0.528;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant9-variant10-variant11-variant13-variant15-variant26-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:377,0,265:3,6,3,9
chr2	102488195	.	C	T	389.78	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.664;FractionInformativeReads=1;MQ=60;MQRankSum=1.68;QD=13.44;ReadPosRankSum=0.502;SOR=1.302;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:418,0,469:5,10,3,11
chr2	102501891	.	A	G	469.48	PASS	AC=1;AF=0.528;AN=2;DP=611;MQ=60;set=variant3-variant4-variant9-variant10-variant11-variant13-variant15-variant26-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:413,0,517:3,15,3,11
chr2	102508146	.	G	A	1369.39	PASS	AC=1;AF=0.662;AN=2;DP=3709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,65:141:99:1792,0,1978:47,29,36,29
chr2	102508449	.	TAAAAA	TA,T,TAAA,TAA,TAAAA	161.32	PASS	AC=0,1,0,0,0;AF=0.077,0.154,0.192,0.038,0.115;AN=2;DP=253;set=variant13-variant15-variant16-variant17-variant24-variant25-variant27-variant29-variant33-variant36-variant37-variant39-variant40	GT:DP:GQ:SB	0/2:19:99:4,4,10,1
chr2	102509363	.	A	T	5950.25	PASS	AC=1;AF=0.625;AN=2;DP=858;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant19-variant21	GT:AD:DP:GQ:PL:SB	0/1:120,103:223:99:2623,0,2977:58,62,44,59
chr2	102615571	.	CT	C	552.44	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.402;FractionInformativeReads=0.969;MQ=60;MQRankSum=-0.02;QD=17.26;ReadPosRankSum=-0.853;SOR=1.022;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:590,0,470:6,8,6,11
chr2	102632582	.	T	A	422.79	PASS	AC=2;AF=0.649;AN=2;DP=915;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1428,108,0:0,0,6,30
chr2	102641201	.	A	G	718.68	PASS	AC=1;AF=0.5;AN=2;DP=1218;MQ=60;set=variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:1051,0,1274:16,28,14,27
chr2	102642558	.	G	GT	393.76	PASS	AC=1;AF=0.5;AN=2;DP=496;MQ=60;set=variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,25:69:99:529,0,1136:33,11,20,5
chr2	102721116	.	G	A	716.55	PASS	AC=1;AF=0.5;AN=2;DP=1098;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant32-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,52:91:99:1226,0,923:19,20,24,28
chr2	102721308	.	G	T	115.87	PASS	AC=1;AF=0.5;AN=2;DP=374;MQ=60;set=variant2-variant4-variant8-variant11-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant32-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:378,0,379:5,9,5,11
chr2	102759293	.	A	C	44.34	PASS	AC=2;AF=0.825;AN=2;DP=562;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:535,42,0:0,0,13,1
chr2	102759381	.	A	T	1010.01	PASS	AC=1;AF=0.641;AN=2;DP=1984;MQ=60;set=variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,29:79:99:568,0,1194:31,19,17,12
chr2	102774054	.	G	A	635.91	PASS	AC=1;AF=0.579;AN=2;DP=1047;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant15-variant19-variant20-variant24-variant28-variant31-variant33-variant34-variant35-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,17:50:99:430,0,941:18,15,12,5
chr2	102781649	.	C	G	970.09	PASS	AC=1;AF=0.5;AN=2;DP=818;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant19-variant22-variant24-variant27-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:59,59:118:99:1430,0,1442:27,32,29,30
chr2	102785158	.	GT	G,TT	570.74	PASS	AC=1,1;AF=0.5,0.167;AN=2;DP=294;MQ=60;set=variant15-variant19-variant24-variant27-variant36-variant37	GT:DP:GQ:SB	1/2:36:99:0,3,12,21
chr2	102788409	.	G	A	3296.81	PASS	AC=2;AF=0.989;AN=2;DP=4160;MQ=60;MQRankSum=0.189;ReadPosRankSum=-0.456;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3932,371,0:0,0,43,81
chr2	102788491	.	CTTTTT	CTT,CT,CTTT,CTTTTTTTT,CTTTTTTT,C,CTTTTTT	54.11	PASS	AC=0,1,0,0,0,0,0;AF=0.206,0.059,0.118,0.029,0.059,0.059,0.029;AN=2;DP=359;set=variant-variant2-variant6-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant29-filterInvariant31-variant34-variant36-variant38-variant41	GT:DP:GQ:SB	0/2:13:57:0,5,0,8
chr2	102792760	.	A	G	1815.58	PASS	AC=1;AF=0.575;AN=2;DP=3271;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,74:171:99:1758,0,2292:56,41,37,37
chr2	102794073	.	C	T	558.41	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.35;SOR=0.586;set=variant15-variant19	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:587,0,873:16,13,12,11
chr2	102794603	.	A	G	977.31	PASS	AC=1;AF=0.5;AN=2;DP=532;MQ=60;set=variant-variant7-variant8-variant15-variant20-variant34	GT:AD:DP:GQ:PL:SB	0/1:39,69:108:99:1874,0,979:13,26,29,40
chr2	102795863	.	G	T	1161.16	PASS	AC=1;AF=0.5;AN=2;DP=1318;MQ=60;set=variant12-variant15-variant19-variant22-variant24-variant27-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:88,89:177:99:2268,0,2137:51,37,54,35
chr2	102796425	.	G	T	811.99	PASS	AC=1;AF=0.5;AN=2;DP=514;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant15-variant19-variant22-variant24-variant27-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:33,44:77:99:1766,0,1616:8,25,9,35
chr2	102796426	.	A	T	811.99	PASS	AC=1;AF=0.5;AN=2;DP=508;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant15-variant19-variant22-variant24-variant27-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:33,45:78:99:1766,0,1616:8,25,9,36
chr2	102804538	.	A	AACC	631.17	PASS	AC=1;AF=0.667;AN=2;DP=1468;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:978,0,1586:2,32,3,23
chr2	102835706	.	T	C	382.95	PASS	AC=1;AF=0.55;AN=2;DP=259;MQ=60;set=variant-variant7-variant8-variant15-variant17-variant20-variant28-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:582,0,349:2,10,4,15
chr2	102842467	.	T	C	1372.76	PASS	AC=1;AF=0.55;AN=2;DP=1181;MQ=60;set=variant-variant7-variant8-variant15-variant17-variant20-variant28-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,70:151:99:1404,0,1767:42,39,34,36
chr2	102851243	.	C	T	208.39	PASS	AC=2;AF=0.595;AN=2;DP=324;FractionInformativeReads=1;set=variant-variant4-variant6-variant8-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:559,48,0:0,0,12,4
chr2	102851708	.	T	C	429.51	PASS	AC=1;AF=0.531;AN=2;DP=936;MQ=60;set=variant-variant4-variant6-variant8-variant12-variant13-variant15-variant17-variant20-variant24-variant28-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,38:64:99:958,0,732:7,19,16,22
chr2	102957628	.	CT	CTT,C	69.62	PASS	AC=1,1;AF=0.474,0.079;AN=2;DP=581;set=variant2-variant3-variant4-variant6-variant7-variant9-variant14-variant15-variant18-variant19-filterInvariant20-filterInvariant23-variant26-variant28-variant31-variant34-variant35-variant42-variant43	GT:DP:GQ:SB	2/1:33:99:0,0,23,10
chr2	102959646	.	A	G	1844.9	PASS	AC=1;AF=0.5;AN=2;DP=1064;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant15-variant22-variant25-variant27-variant33-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,61:128:99:1765,0,1929:37,30,34,27
chr2	102960824	.	A	G	460.77	PASS	AC=1;AF=0.556;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant9-variant10-variant12-variant15-variant19-variant22-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:601,0,689:15,12,15,10
chr2	102962341	.	C	T	1240.77	PASS	AC=1;AF=0.5;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant15-variant22-variant25-variant27-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:42,27:69:99:1051,0,2417:23,19,16,11
chr2	102962346	.	C	G	1268.17	PASS	AC=1;AF=0.5;AN=2;DP=528;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant15-variant22-variant25-variant27-variant33-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:1084,0,2397:22,18,17,13
chr2	102967928	.	A	G	412.18	PASS	AC=2;AF=0.574;AN=2;DP=1360;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2732,213,0:0,0,58,13
chr2	102968007	.	G	A	1875.88	PASS	AC=2;AF=0.574;AN=2;DP=4876;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:7071,692,0:0,0,142,89
chr2	102968075	.	T	C	3179.6	PASS	AC=2;AF=0.574;AN=2;DP=7488;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,292:292:99:9052,876,0:0,0,142,150
chr2	102968211	.	C	A	2280.02	PASS	AC=2;AF=0.574;AN=2;DP=3749;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:6147,421,0:0,0,50,90
chr2	102968212	.	A	G	2280.02	PASS	AC=2;AF=0.574;AN=2;DP=3715;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:6147,421,0:0,0,47,89
chr2	102968285	.	T	C	738.69	PASS	AC=2;AF=0.574;AN=2;DP=2166;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2360,206,0:0,0,24,45
chr2	102968356	.	C	T	1291.73	PASS	AC=2;AF=0.574;AN=2;DP=1631;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2141,147,0:0,0,20,29
chr2	102968362	.	T	C	1354.47	PASS	AC=2;AF=0.574;AN=2;DP=1635;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2139,147,0:0,0,20,27
chr2	102972499	.	GGAGCGCCCCAGACTGA	G	1225.03	PASS	AC=1;AF=0.5;AN=2;DP=701;MQ=60;set=variant2-variant4-variant6-variant7-variant15-variant18-variant23-variant26-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:1206,0,8380:23,23,17,16
chr2	102972534	.	C	T	1235.25	PASS	AC=1;AF=0.5;AN=2;DP=603;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant18-variant23-variant26-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,37:89:99:1306,0,8470:27,25,17,20
chr2	102972667	.	CT	CTT,C,CTTT	347.2	PASS	AC=1,0,0;AF=0.47,0.045,0.015;AN=2;DP=1248;set=variant-variant3-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant21-variant22-variant24-filterInvariant26-variant29-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:24:99:7,6,4,7
chr2	102972799	.	G	C	825.4	PASS	AC=2;AF=0.574;AN=2;DP=2097;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2394,186,0:0,0,31,31
chr2	102972807	.	G	A	2232.56	PASS	AC=1;AF=0.5;AN=2;DP=744;MQ=60;set=variant5-variant12-variant15-variant22-variant25-variant27-variant33-variant34-variant36-variant37	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:809,0,712:12,15,19,14
chr2	102984624	.	C	G	99.52	PASS	AC=2;AF=0.574;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:491,36,0:0,0,1,11
chr2	102998279	.	A	G	190.6	PASS	AC=2;AF=0.688;AN=2;DP=640;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:743,60,0:0,0,4,16
chr2	103006448	.	C	T	838.05	PASS	AC=2;AF=0.671;AN=2;DP=2184;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1931,200,0:0,0,39,28
chr2	103010912	.	C	T	678.2	PASS	AC=2;AF=0.671;AN=2;DP=2194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:1990,203,0:0,0,42,26
chr2	103014696	.	C	T	907.78	PASS	AC=2;AF=0.802;AN=2;DP=1567;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1250,102,0:0,0,19,15
chr2	103035044	.	A	G	982.81	PASS	AC=2;AF=0.802;AN=2;DP=803;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1428,105,0:0,0,32,3
chr2	103035119	.	T	C	1136.58	PASS	AC=2;AF=0.671;AN=2;DP=3175;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4012,372,0:0,0,83,41
chr2	103035455	.	G	A	627.11	PASS	AC=1;AF=0.5;AN=2;DP=691;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant15-variant23-variant26-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,50:87:99:1250,0,944:16,21,19,31
chr2	103036335	.	A	G	91.72	PASS	AC=2;AF=0.75;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant34-variant36-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:231,21,0:0,0,2,5
chr2	103039584	.	A	T	934.12	PASS	AC=2;AF=0.802;AN=2;DP=1625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1449,125,0:0,0,35,7
chr2	103039686	.	C	A	1251.34	PASS	AC=1;AF=0.556;AN=2;DP=1232;MQ=60;set=variant12-variant15-variant21-variant22-variant25-variant27-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:79,86:165:99:1994,0,1843:44,35,39,47
chr2	103040247	.	T	TG	895.2	PASS	AC=2;AF=0.802;AN=2;DP=1071;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:84:1215,84,0:0,0,20,6
chr2	103040249	.	C	T	904.24	PASS	AC=2;AF=0.802;AN=2;DP=1119;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1215,84,0:0,0,22,6
chr2	103048735	.	G	A	427.57	PASS	AC=1;AF=0.556;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant21-variant22-variant25-variant27-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:561,0,656:17,5,16,3
chr2	103048738	.	G	A	545.31	PASS	AC=2;AF=0.554;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant33-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1805,141,0:0,0,38,9
chr2	103048780	.	C	T	876.16	PASS	AC=1;AF=0.556;AN=2;DP=708;MQ=60;set=variant12-variant15-variant21-variant22-variant25-variant27-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:62,36:98:99:935,0,1649:41,21,25,11
chr2	103057668	.	G	A	592.21	PASS	AC=2;AF=0.554;AN=2;DP=1774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant33-variant35-variant36-variant37-variant38-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1951,192,0:0,0,40,24
chr2	103059613	.	A	G	3767.96	PASS	AC=2;AF=1;AN=2;DP=4390;FS=0;MQ=60;MQRankSum=0.874;ReadPosRankSum=0.379;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3663,333,0:0,0,63,48
chr2	103063369	.	G	A	926.41	PASS	AC=2;AF=0.802;AN=2;DP=1369;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:965,93,0:0,0,19,12
chr2	103063489	.	C	T	856.29	PASS	AC=1;AF=0.556;AN=2;DP=640;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant21-variant22-variant25-variant27-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:33,39:72:99:1030,0,842:21,12,24,15
chr2	103068156	.	C	T	82.08	PASS	AC=1;AF=0.563;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant15-variant21-variant22-variant25-variant27-variant36-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:28,5:33:99:110,0,810:21,7,5,0
chr2	103068787	.	G	A	1827.82	PASS	AC=2;AF=0.802;AN=2;DP=3741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3811,358,0:0,0,80,40
chr2	103068834	.	T	A	2485.08	PASS	AC=2;AF=0.802;AN=2;DP=5482;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5179,510,0:0,0,95,75
chr2	103090041	.	T	C	415.64	PASS	AC=2;AF=0.556;AN=2;DP=1129;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant21-variant22-variant25-variant26-variant27-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1588,150,0:0,0,23,27
chr2	103095404	.	G	A	883.53	PASS	AC=1;AF=0.603;AN=2;DP=4959;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,83:177:99:1893,0,2349:49,45,46,37
chr2	103120179	.	C	T	1349.14	PASS	AC=1;AF=0.55;AN=2;DP=1246;MQ=60;set=variant3-variant4-variant6-variant7-variant15-variant29-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,71:152:99:1748,0,2009:31,50,25,46
chr2	103120232	.	G	A	2821.58	PASS	AC=2;AF=0.788;AN=2;DP=3321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2947,260,0:0,0,24,63
chr2	103120311	.	G	A	1160.03	PASS	AC=2;AF=0.8;AN=2;DP=1038;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:751,57,0:0,0,2,17
chr2	103120356	.	C	T	412.43	PASS	AC=2;AF=0.816;AN=2;DP=386;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:392,27,0:0,0,0,9
chr2	103121533	.	TAGGG	T	515.38	PASS	AC=1;AF=0.563;AN=2;DP=122;MQ=60;set=variant3-variant4-variant6-variant7-variant15-variant29-variant35-variant39	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:570,0,210:3,3,11,3
chr2	103121536	.	G	A	154.82	PASS	AC=1;AF=0.742;AN=2;DP=422;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:125,0,570:11,3,3,3
chr2	103125182	.	C	T	148.54	PASS	AC=2;AF=0.855;AN=2;DP=168;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:82,6,0:0,0,2,0
chr2	103125457	.	A	G	2991.22	PASS	AC=2;AF=0.8;AN=2;DP=1736;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1834,123,0:0,0,18,23
chr2	103125466	.	T	C	2921.46	PASS	AC=2;AF=0.8;AN=2;DP=1656;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1859,126,0:0,0,18,24
chr2	103128866	.	T	C	1254.92	PASS	AC=2;AF=0.813;AN=2;DP=2029;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1961,189,0:0,0,25,38
chr2	103136309	.	T	C	2787	PASS	AC=2;AF=0.813;AN=2;DP=5209;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5165,504,0:0,0,82,86
chr2	103136446	.	T	G	1408.49	PASS	AC=2;AF=0.8;AN=2;DP=1951;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2168,189,0:0,0,20,43
chr2	103141447	.	A	G	662.4	PASS	AC=1;AF=0.716;AN=2;DP=3008;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,57:87:99:1519,0,686:14,16,33,24
chr2	103141651	.	G	C	658.03	PASS	AC=2;AF=0.825;AN=2;DP=972;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:932,72,0:0,0,4,20
chr2	103142994	.	G	A	127.62	PASS	AC=1;AF=0.55;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant15-variant29-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:441,0,581:3,14,1,12
chr2	103149100	.	G	A	780.66	PASS	AC=1;AF=0.716;AN=2;DP=2973;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,35:91:99:867,0,1671:27,29,16,19
chr2	103149162	.	A	G	1092.38	PASS	AC=1;AF=0.716;AN=2;DP=2732;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,37:85:99:968,0,1400:24,24,22,15
chr2	103149182	.	A	G	1130.59	PASS	AC=1;AF=0.716;AN=2;DP=2700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:908,0,1439:26,22,20,16
chr2	103149210	.	G	A	1697	PASS	AC=1;AF=0.556;AN=2;DP=795;MQ=60;set=variant3-variant4-variant6-variant7-variant15-variant29-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1490,0,1065:26,17,26,23
chr2	103149520	.	A	T	1605.11	PASS	AC=1;AF=0.545;AN=2;DP=1195;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant15-variant29-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,47:109:99:1357,0,1754:28,34,18,29
chr2	103149698	.	A	C	272.24	PASS	AC=1;AF=0.703;AN=2;DP=1498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,35:53:99:960,0,496:7,11,12,23
chr2	103281960	.	A	G	490.23	PASS	AC=2;AF=0.988;AN=2;DP=497;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:479,33,0:0,0,0,11
chr2	103300506	.	A	G	1152.38	PASS	AC=1;AF=0.731;AN=2;DP=3614;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,53:103:99:1236,0,1338:32,18,31,22
chr2	103324575	.	T	C	599.69	PASS	AC=2;AF=0.591;AN=2;DP=764;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1231,113,0:0,0,27,11
chr2	103326908	.	TAA	T	2779.47	PASS	AC=2;AF=0.591;AN=2;DP=2694;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:5532,379,0:0,0,67,59
chr2	103327241	.	G	C	1660.18	PASS	AC=2;AF=0.568;AN=2;DP=2988;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,174:176:99:5748,478,0:1,1,96,78
chr2	103327476	.	A	G	5756.43	PASS	AC=2;AF=0.798;AN=2;DP=16188;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,511:515:99:15554,1421,0:3,1,256,255
chr2	103333230	.	A	G	2402.65	PASS	AC=2;AF=0.568;AN=2;DP=3848;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:6446,656,0:0,0,112,107
chr2	103333544	.	A	T	89.18	PASS	AC=2;AF=0.676;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant10-variant12-variant13-variant15-variant21-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:313,24,0:0,0,2,6
chr2	103333705	.	A	G	127.62	PASS	AC=2;AF=0.821;AN=2;DP=450;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:809,63,0:0,0,15,6
chr2	103343234	.	G	C	194.35	PASS	AC=2;AF=0.798;AN=2;DP=757;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1009,75,0:0,0,21,4
chr2	103343275	.	GAA	GA,GAAA,G	202.4	PASS	AC=0,1,0;AF=0.143,0.357,0.029;AN=2;DP=1394;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-filterInvariant23-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43	GT:DP:GQ:SB	0/2:47:99:16,12,12,7
chr2	104995800	.	C	T	1239.65	PASS	AC=2;AF=0.528;AN=2;DP=2296;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant27-variant30-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4747,440,0:0,0,71,76
chr2	105472055	.	T	C	399.59	PASS	AC=1;AF=0.744;AN=2;DP=576;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:87:224,0,87:1,4,2,6
chr2	105473698	.	G	T	563.64	PASS	AC=1;AF=0.697;AN=2;DP=1705;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,39:86:99:902,0,1247:23,24,20,19
chr2	105475259	.	C	T	4590.64	PASS	AC=1;AF=0.756;AN=2;DP=7778;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,115:231:99:3007,0,2951:62,54,46,69
chr2	105475330	.	A	G	3980.46	PASS	AC=1;AF=0.756;AN=2;DP=6118;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,82:192:99:2260,0,2813:51,59,26,56
chr2	105475594	.	G	GT	3664.32	PASS	AC=1;AF=0.768;AN=2;DP=4673;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,75:132:99:1926,0,1340:37,20,44,31
chr2	105476225	.	A	G	3876.25	PASS	AC=1;AF=0.756;AN=2;DP=4191;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,96:148:99:2405,0,1039:24,28,48,48
chr2	105654446	.	A	G	891.84	PASS	AC=2;AF=0.613;AN=2;DP=3159;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3361,321,0:0,0,59,48
chr2	105654716	.	C	T	935.02	PASS	AC=2;AF=0.613;AN=2;DP=3986;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,162:164:99:4682,440,0:1,1,69,93
chr2	105654830	.	G	T	220.9	PASS	AC=2;AF=0.613;AN=2;DP=748;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,31:32:84:1018,84,0:0,1,5,26
chr2	105696591	.	C	T	230.44	PASS	AC=1;AF=0.625;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant15-variant17-variant21-variant23-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:351,0,310:2,9,3,10
chr2	105709023	.	T	C	2141.59	PASS	AC=2;AF=0.966;AN=2;DP=3513;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3028,290,0:0,0,33,64
chr2	105882601	.	C	T	760.24	PASS	AC=1;AF=0.5;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,56:110:99:1324,0,1233:30,24,28,28
chr2	105882683	.	C	T	894.25	PASS	AC=1;AF=0.5;AN=2;DP=1370;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,70:146:99:1564,0,1866:35,41,34,36
chr2	105882761	.	G	A	892.62	PASS	AC=1;AF=0.542;AN=2;DP=1510;MQ=60;set=variant-variant2-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:918,0,895:14,19,16,20
chr2	105883624	.	TTTCCATGTACATTCATAGAGCCTGGTCA	T	2297.15	PASS	AC=2;AF=0.81;AN=2;DP=3267;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:3248,224,0:0,0,36,37
chr2	105885961	.	T	C	696.16	PASS	AC=1;AF=0.692;AN=2;DP=4577;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,88:180:99:2203,0,2236:44,48,53,35
chr2	105886219	.	C	A	324.35	PASS	AC=1;AF=0.5;AN=2;DP=424;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:496,0,315:3,9,2,13
chr2	105889804	.	C	A	363.86	PASS	AC=1;AF=0.5;AN=2;DP=377;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:437,0,462:12,1,11,5
chr2	105897261	.	C	T	445.48	PASS	AC=2;AF=0.955;AN=2;DP=1418;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1069,107,0:0,0,12,24
chr2	105915128	.	G	A	1040.89	PASS	AC=1;AF=0.536;AN=2;DP=1320;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,61:101:99:1615,0,950:13,27,20,41
chr2	105923991	.	G	A	224.29	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant28	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:253,0,481:11,6,6,6
chr2	105924510	.	A	G	661.85	PASS	AC=2;AF=0.677;AN=2;DP=3389;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4851,399,0:0,0,75,58
chr2	105953938	.	G	GC	4643.38	PASS	AC=2;AF=0.774;AN=2;DP=5759;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:7182,536,0:0,0,97,81
chr2	105959592	.	G	A	1924.37	PASS	AC=1;AF=0.5;AN=2;DP=421;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant28	GT:AD:DP:GQ:PL:SB	0/1:81,75:156:99:1953,0,2140:34,47,31,44
chr2	105959752	.	A	G	178.39	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant28	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:207,0,479:2,12,0,6
chr2	105961703	.	G	A	359.31	PASS	AC=2;AF=0.677;AN=2;DP=1296;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1630,138,0:0,0,34,12
chr2	105962162	.	A	G	1514.47	PASS	AC=1;AF=0.5;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant28	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1543,0,1248:5,34,6,40
chr2	105963306	.	G	A	5012.14	PASS	AC=1;AF=0.5;AN=2;DP=1060;MQ=60;set=variant15-variant19-variant28	GT:AD:DP:GQ:PL:SB	0/1:246,201:447:99:5040,0,6433:116,130,93,108
chr2	105963601	.	CTG	C	8452.08	PASS	AC=1;AF=0.536;AN=2;DP=6228;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:254,256:510:99:9918,0,9967:134,120,127,129
chr2	105964462	.	T	TTTC	5288.45	PASS	AC=2;AF=0.774;AN=2;DP=6015;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:7418,507,0:0,0,47,121
chr2	105964684	.	A	G	299.18	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant28	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:327,0,808:12,15,8,8
chr2	105974162	.	CT	C	960.69	PASS	AC=1;AF=0.556;AN=2;DP=1098;MQ=60;set=variant-variant5-variant6-filterInvariant7-variant9-variant12-variant15-variant16-variant18-variant23-variant24-variant25-variant28-variant31-variant34-variant37-variant38-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:727,0,671:24,10,28,11
chr2	105974978	.	A	G	797.55	PASS	AC=1;AF=0.629;AN=2;DP=2885;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,65:116:99:1582,0,1192:21,30,30,35
chr2	105975463	.	G	A	542.23	PASS	AC=1;AF=0.563;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant15-variant16-variant18-variant19-variant23-variant25-variant28-variant31-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:56,25:81:99:626,0,1456:29,27,13,12
chr2	105975550	.	G	A	938.45	PASS	AC=1;AF=0.563;AN=2;DP=1422;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant15-variant16-variant18-variant19-variant23-variant25-variant28-variant31-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:70,42:112:99:1061,0,1864:33,37,26,16
chr2	105975656	.	CT	C	3214.26	PASS	AC=1;AF=0.563;AN=2;DP=3168;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant15-variant16-variant18-variant19-variant23-variant25-variant28-variant31-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:135,118:253:99:3825,0,4598:79,56,62,56
chr2	105976344	.	A	G	1024.08	PASS	AC=2;AF=0.762;AN=2;DP=1774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1831,171,0:0,0,23,34
chr2	105977761	.	G	A	1317.13	PASS	AC=1;AF=0.563;AN=2;DP=2071;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant15-variant16-variant18-variant19-variant23-variant25-variant28-variant31-variant34-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:89,70:159:99:1865,0,2331:47,42,39,31
chr2	105977903	.	G	C	499.85	PASS	AC=1;AF=0.536;AN=2;DP=1291;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,63:121:99:1680,0,1590:22,36,26,37
chr2	105979730	.	C	A	526.87	PASS	AC=1;AF=0.589;AN=2;DP=4644;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:106,75:181:99:1878,0,2566:56,50,49,26
chr2	105994276	.	T	C	44.5	PASS	AC=1;AF=0.692;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:89:184,0,89:3,0,5,2
chr2	106013216	.	T	C	4622.78	PASS	AC=2;AF=0.775;AN=2;DP=12929;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,357:359:99:10710,1026,0:1,1,189,168
chr2	106013248	.	C	T	4973.08	PASS	AC=2;AF=0.609;AN=2;DP=11063;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,385:387:99:11193,1107,0:1,1,199,186
chr2	106013467	.	GTTT	G,GTT,GTTTTTTT,GTTTTTT,GTTTT,GTTTTT	66.54	PASS	AC=0,0,1,0,0,0;AF=0.017,0.267,0.033,0.083,0.1,0.117;AN=2;DP=672;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant43	GT:DP:GQ:SB	0/3:14:99:0,6,0,8
chr2	106361607	.	T	C	298.29	PASS	AC=2;AF=0.943;AN=2;DP=918;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:643,63,0:0,0,12,9
chr2	106471327	.	C	A	831.02	PASS	AC=2;AF=0.769;AN=2;DP=1126;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1445,114,0:0,0,34,4
chr2	106471393	.	T	C	2279.48	PASS	AC=2;AF=0.942;AN=2;DP=3518;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3733,366,0:0,0,72,50
chr2	106471825	.	C	CA,CAAA,CAA	466.05	PASS	AC=1,0,0;AF=0.683,0.024,0.122;AN=2;DP=1104;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:29:46:1,4,8,16
chr2	106509907	.	C	T	772.61	PASS	AC=1;AF=0.571;AN=2;DP=1554;MQ=60;set=variant-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant20-variant22-variant23-variant24-variant26-variant29-variant30-variant32-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:1072,0,788:13,19,16,26
chr2	106510191	.	T	TAAAG	4355.95	PASS	AC=2;AF=0.953;AN=2;DP=4233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,122:124:99:4371,379,0:1,1,76,46
chr2	106679686	.	C	T	291.16	PASS	AC=1;AF=0.633;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:275,0,145:4,1,7,2
chr2	106679971	.	C	T	1030.74	PASS	AC=1;AF=0.5;AN=2;DP=785;MQ=60;set=variant-variant9-variant10-variant11-variant15-variant16-variant17-variant23-variant26-variant32-variant35	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1135,0,1212:15,32,14,32
chr2	106680019	.	G	A	1557.64	PASS	AC=2;AF=1;AN=2;DP=1437;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2085,168,0:0,0,11,45
chr2	106682226	.	T	C	2167.43	PASS	AC=1;AF=0.521;AN=2;DP=3163;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,77:144:99:2996,0,3398:36,31,48,29
chr2	106682235	.	C	G	2257.04	PASS	AC=1;AF=0.521;AN=2;DP=3421;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,83:156:99:3143,0,3546:40,33,50,33
chr2	106682365	.	T	G	2365.47	PASS	AC=1;AF=0.523;AN=2;DP=4668;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:117,151:268:99:3625,0,2677:56,61,72,79
chr2	106687055	.	G	A	90.18	PASS	AC=1;AF=0.625;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant9-variant15-variant25-variant33-variant39-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:118,0,74:2,1,3,1
chr2	106690557	.	G	A	37.27	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant2-variant13-variant15-variant22-variant25-variant30-variant33-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:144,0,228:1,6,1,3
chr2	106709782	.	A	T	376.89	PASS	AC=2;AF=1;AN=2;DP=623;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:608,57,0:0,0,13,6
chr2	106710108	.	C	T	7350.49	PASS	AC=2;AF=1;AN=2;DP=8574;FS=0;MQ=60;MQRankSum=0.507;ReadPosRankSum=0.507;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7471,719,0:0,0,150,90
chr2	106710668	.	C	CGCAGGAAGGAAGTGCCACCTT	1119.91	PASS	AC=2;AF=0.826;AN=2;DP=2641;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:72:1123,72,0:0,0,3,24
chr2	106713480	.	C	G	1183.29	PASS	AC=1;AF=0.5;AN=2;DP=975;FractionInformativeReads=1;MQ=60;set=variant2-variant13-variant15-variant17-variant22-variant25-variant30-variant33-variant36-variant40	GT:AD:DP:GQ:PL:SB	0/1:78,45:123:99:1079,0,2158:40,38,26,19
chr2	106715342	.	G	A,T	938.63	PASS	AC=2,0;AF=0.886,0.114;AN=2;DP=1762;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:60:99:0,0,15,45
chr2	106717171	.	T	C	218.84	PASS	AC=2;AF=0.865;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:598,48,0:0,0,11,5
chr2	106717274	.	A	G	965.78	PASS	AC=2;AF=0.818;AN=2;DP=1642;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1810,174,0:0,0,33,25
chr2	106717656	.	G	A	151.77	PASS	AC=2;AF=0.814;AN=2;DP=552;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:446,33,0:0,0,1,10
chr2	106742139	.	C	T	1614.15	PASS	AC=2;AF=1;AN=2;DP=3680;FS=0;MQ=60;MQRankSum=1.37;ReadPosRankSum=-0.806;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2245,235,0:0,0,40,39
chr2	106742177	.	T	A	1567.96	PASS	AC=2;AF=0.966;AN=2;DP=3248;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2412,251,0:0,0,39,45
chr2	106754734	.	A	G	2276.93	PASS	AC=1;AF=0.75;AN=2;DP=4377;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,61:128:99:1569,0,1620:38,29,41,20
chr2	106780015	.	C	T	1328.64	PASS	AC=2;AF=1;AN=2;DP=1426;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:814,81,0:0,0,16,11
chr2	106780055	.	C	CTG	2777.34	PASS	AC=2;AF=1;AN=2;DP=1986;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1710,114,0:0,0,22,15
chr2	106782398	.	C	G	743.54	PASS	AC=2;AF=1;AN=2;DP=1222;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1339,120,0:0,0,26,14
chr2	106810727	.	A	G	10418.4	PASS	AC=2;AF=1;AN=2;DP=14860;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,399:400:99:11259,1150,0:1,0,161,238
chr2	106994382	.	A	G	295.24	PASS	AC=1;AF=0.87;AN=2;DP=183;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant24-variant25-filterInvariant29-variant31-variant33-variant35-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:118,0,255:7,4,4,2
chr2	107002646	.	G	C	1098.23	PASS	AC=1;AF=0.768;AN=2;DP=1324;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:447,0,262:8,4,13,4
chr2	107007576	.	A	T	811.98	PASS	AC=1;AF=0.692;AN=2;DP=1514;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:713,0,766:4,21,7,17
chr2	107007994	.	TA	T,TAA	341.34	PASS	AC=1,0;AF=0.675,0.013;AN=2;DP=1169;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:34:99:9,9,6,10
chr2	107032279	.	T	C	3636.03	PASS	AC=1;AF=0.78;AN=2;DP=6543;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:108,78:186:99:1687,0,2513:58,50,45,33
chr2	107049714	.	C	G	204.26	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2185;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,66:126:99:1366,0,1211:20,40,25,41
chr2	107073469	.	T	A	2277.85	PASS	AC=1;AF=0.692;AN=2;DP=3276;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,43:122:99:802,0,1834:46,33,23,20
chr2	107073501	.	C	T	2522.06	PASS	AC=1;AF=0.692;AN=2;DP=3581;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,49:136:99:854,0,1869:45,42,24,25
chr2	107075909	.	GT	G	48.98	PASS	AC=1;AF=0.5;AN=2;DP=102;set=variant9-variant15-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:77:282,0,77:0,4,2,9
chr2	107107694	.	A	G	687.7	PASS	AC=2;AF=1;AN=2;DP=1266;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:947,78,0:0,0,5,21
chr2	107118896	.	T	C	160.68	PASS	AC=2;AF=1;AN=2;DP=1208;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:732,66,0:0,0,16,6
chr2	107119136	.	G	C	176.5	PASS	AC=2;AF=1;AN=2;DP=1122;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1174,108,0:0,0,11,25
chr2	107121040	.	T	TA	1711.54	PASS	AC=2;AF=1;AN=2;DP=1657;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1170,123,0:0,0,23,18
chr2	107123363	.	A	T	167.55	PASS	AC=1;AF=0.591;AN=2;DP=691;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant7-filterInvariant9-variant10-filterInvariant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant21-variant23-variant28-variant29-variant30-variant34-variant38-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:641,0,706:12,17,17,15
chr2	107418036	.	T	C	399.49	PASS	AC=2;AF=0.708;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:298,21,0:0,0,7,0
chr2	107419631	.	C	CT	2237.81	PASS	AC=1;AF=0.5;AN=2;DP=363;MQ=60;set=variant9-variant15	GT:AD:DP:GQ:PL:SB	0/1:76,84:160:99:2068,0,1832:22,54,31,53
chr2	107420068	.	TAACAACAAC	TAAC,TAACAAC,T	59.04	PASS	AC=0,1,0;AF=0.134,0.646,0.012;AN=2;DP=651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:13:99:5,4,0,4
chr2	107420143	.	C	T	409.26	PASS	AC=2;AF=0.711;AN=2;DP=750;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:739,72,0:0,0,12,12
chr2	107420409	.	T	C	4996.99	PASS	AC=2;AF=0.744;AN=2;DP=14314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,421:421:99:13158,1262,0:0,0,254,167
chr2	107421297	.	CAA	CAAA,CAAAA,CAAAAA,C	1002.71	PASS	AC=0,1,0,0;AF=0.269,0.295,0.051,0.038;AN=2;DP=1516;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:29:83:6,0,11,12
chr2	107423188	.	G	A	2630.99	PASS	AC=2;AF=0.697;AN=2;DP=7127;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,227:227:99:7405,681,0:0,0,88,139
chr2	107423395	.	T	G	847.73	PASS	AC=2;AF=0.75;AN=2;DP=3447;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2765,261,0:0,0,40,47
chr2	107429801	.	C	T	315.57	PASS	AC=2;AF=0.805;AN=2;DP=1090;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1391,126,0:0,0,15,27
chr2	107446396	.	T	C	504.4	PASS	AC=2;AF=0.837;AN=2;DP=797;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:611,54,0:0,0,14,4
chr2	107446430	.	T	C	863.3	PASS	AC=2;AF=0.852;AN=2;DP=1367;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1248,111,0:0,0,27,10
chr2	107449321	.	A	T	326.37	PASS	AC=2;AF=0.924;AN=2;DP=303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:350,39,0:0,0,4,9
chr2	107460474	.	T	G	943.97	PASS	AC=2;AF=0.681;AN=2;DP=4161;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4366,443,0:0,0,65,83
chr2	107502903	.	C	G	451.11	PASS	AC=1;AF=0.5;AN=2;DP=386;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant12-variant15-variant18-variant29-variant30-variant32-variant33	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:540,0,770:9,19,7,12
chr2	107503324	.	C	T	587.2	PASS	AC=2;AF=0.789;AN=2;DP=954;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:929,81,0:0,0,18,9
chr2	108443325	.	T	C	950.21	PASS	AC=2;AF=0.75;AN=2;DP=1380;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1791,120,0:0,0,29,11
chr2	108443328	.	A	T	950.21	PASS	AC=2;AF=0.738;AN=2;DP=1421;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1755,117,0:0,0,29,10
chr2	108443511	.	C	G	2043.16	PASS	AC=2;AF=0.75;AN=2;DP=6169;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:8160,610,0:0,0,97,106
chr2	108443567	.	G	A	2302.57	PASS	AC=2;AF=0.738;AN=2;DP=5097;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:7525,509,0:0,0,68,97
chr2	108443591	.	A	C	2109.33	PASS	AC=2;AF=0.75;AN=2;DP=3983;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:6165,412,0:0,0,46,85
chr2	108443598	.	G	C	1875.42	PASS	AC=2;AF=0.738;AN=2;DP=3677;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:5130,343,0:0,0,38,75
chr2	108443647	.	C	G	511.77	PASS	AC=2;AF=0.81;AN=2;DP=1404;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1620,108,0:0,0,8,23
chr2	108475958	.	A	G	4452.92	PASS	AC=1;AF=0.679;AN=2;DP=9857;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:37,257:294:29:6021,0,29:19,18,113,144
chr2	108479432	.	G	A	1634.17	DRAGENHardSNP	AC=2;AF=0.738;AN=2;DP=3449;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2266,258,0:0,0,31,56
chr2	108479487	.	A	T	835.5	PASS	AC=2;AF=0.738;AN=2;DP=1538;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1186,126,0:0,0,13,29
chr2	108486323	.	C	CT	140.33	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=4.369;FractionInformativeReads=0.896;MQ=42.56;MQRankSum=-3.602;QD=2.09;ReadPosRankSum=1.963;SOR=1.426;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:45,15:60:99:178,0,992:19,26,4,11
chr2	108487097	.	G	A	494.99	DRAGENHardSNP	AC=2;AF=0.792;AN=2;DP=593;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:443,48,0:0,0,16,0
chr2	108487330	.	A	G	3988.11	PASS	AC=2;AF=0.769;AN=2;DP=5445;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2783,279,0:0,0,40,53
chr2	108487826	.	C	T	468.16	DRAGENHardSNP	AC=2;AF=0.886;AN=2;DP=451;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:814,66,0:0,0,0,22
chr2	108487829	.	G	C	435.64	PASS	AC=2;AF=0.886;AN=2;DP=300;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant9-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant32-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:63:785,63,0:0,0,0,12
chr2	108488742	.	G	T	1521.36	DRAGENHardSNP	AC=2;AF=0.617;AN=2;DP=6994;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:1,305:306:99:7561,903,0:0,1,101,204
chr2	108489362	.	C	T	1074.83	PASS	AC=1;AF=0.5;AN=2;DP=332;FS=0;FractionInformativeReads=1;set=variant3-variant5-variant6-variant15-variant16-variant20-variant28-variant30-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:526,0,853:0,27,0,19
chr2	108496435	.	T	A	1775.19	PASS	AC=2;AF=0.75;AN=2;DP=2461;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2555,236,0:0,0,57,22
chr2	108499667	.	C	T	443.35	PASS	AC=2;AF=0.846;AN=2;DP=424;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:198,21,0:0,0,4,3
chr2	108507268	.	T	C	1338.11	PASS	AC=2;AF=0.625;AN=2;DP=3205;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3137,348,0:0,0,58,58
chr2	108618146	.	G	A	102.31	PASS	AC=2;AF=0.625;AN=2;DP=199;FractionInformativeReads=1;set=variant-variant2-variant4-variant8-variant11-variant15-variant19-variant31-variant32-variant35-variant39-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:686,63,0:0,0,19,2
chr2	108618540	.	G	A	1739.68	PASS	AC=2;AF=0.635;AN=2;DP=1400;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant11-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1503,141,0:0,0,19,28
chr2	108622812	.	TTA	T	752.81	PASS	AC=2;AF=0.875;AN=2;DP=1875;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1863,130,0:0,0,7,36
chr2	108622833	.	ATT	A,AT	123.56	PASS	AC=1,0;AF=0.091,0.409;AN=2;DP=321;MQ=60;set=variant2-variant4-variant5-filterInvariant7-variant9-variant15-variant19-filterInvariant20-filterInvariant26-variant29-variant34	GT:DP:GQ:SB	0/1:10:89:1,3,0,6
chr2	108627917	.	G	A	8271.95	PASS	AC=2;AF=0.875;AN=2;DP=27575;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,739:739:99:23472,2213,0:0,0,383,356
chr2	108628585	.	T	G	2309.04	PASS	AC=2;AF=0.676;AN=2;DP=4031;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5193,358,0:0,0,72,46
chr2	108628586	.	G	T	2309.04	PASS	AC=2;AF=0.676;AN=2;DP=4038;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5193,358,0:0,0,73,45
chr2	108629104	.	G	A	2133.31	PASS	AC=2;AF=0.875;AN=2;DP=6417;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:6049,566,0:0,0,115,74
chr2	108629260	.	A	C	5300.64	PASS	AC=2;AF=0.676;AN=2;DP=13810;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,480:481:99:14213,1404,0:1,0,247,233
chr2	108629847	.	AAGTT	A	5717.55	PASS	AC=2;AF=0.625;AN=2;DP=4150;MQ=60;set=variant2-variant7-variant9-variant11-variant15-variant17-variant19-variant21-variant24-variant34-variant36-variant39	GT:AD:DP:GQ:PL:SB	1/1:1,388:389:99:17319,1141,0:1,0,243,145
chr2	108915136	.	T	C	408.15	PASS	AC=1;AF=0.703;AN=2;DP=1461;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:443,0,507:10,11,11,7
chr2	108915263	.	C	T	306.94	PASS	AC=1;AF=0.716;AN=2;DP=1009;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:418,0,298:6,8,7,10
chr2	108925780	.	T	C	1255.78	PASS	AC=1;AF=0.756;AN=2;DP=1582;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,15:45:99:435,0,725:11,19,8,7
chr2	108938552	.	T	G	205.68	PASS	AC=1;AF=0.71;AN=2;DP=399;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:214,0,362:8,4,6,1
chr2	108946156	.	T	C	264.32	PASS	AC=1;AF=0.683;AN=2;DP=608;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:291,0,416:1,12,3,9
chr2	108946178	.	A	G	273.32	PASS	AC=1;AF=0.683;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:151,0,243:1,6,0,5
chr2	109006665	.	T	A	904.34	PASS	AC=1;AF=0.556;AN=2;DP=1226;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant24-variant27-variant28-variant30-variant34-variant35-variant36-variant37-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:924,0,1403:21,35,13,25
chr2	109065123	.	C	T	1774.33	PASS	AC=1;AF=0.674;AN=2;DP=3968;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,124:230:99:2962,0,2359:49,57,57,67
chr2	109065481	.	C	CA	1690.71	PASS	AC=1;AF=0.674;AN=2;DP=2646;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,52:111:99:1633,0,1814:29,30,31,21
chr2	109065858	.	T	C	1330.13	PASS	AC=1;AF=0.717;AN=2;DP=2535;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1142,0,1615:23,33,17,29
chr2	109065919	.	T	C	1054.47	PASS	AC=1;AF=0.674;AN=2;DP=1445;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:1167,0,1092:23,18,25,17
chr2	109067337	.	C	T	148.64	PASS	AC=1;AF=0.682;AN=2;DP=390;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:325,0,354:10,0,8,2
chr2	109067359	.	G	A	293.44	PASS	AC=1;AF=0.674;AN=2;DP=702;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:788,0,1267:22,2,14,7
chr2	109067360	.	T	A	293.44	PASS	AC=1;AF=0.674;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:788,0,1267:22,2,14,7
chr2	109069008	.	T	C	535.67	PASS	AC=1;AF=0.717;AN=2;DP=1271;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:355,0,597:13,12,4,11
chr2	109085373	.	A	G	1707.71	PASS	AC=1;AF=0.674;AN=2;DP=2895;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,86:162:99:2077,0,1836:43,33,48,38
chr2	109089404	.	C	G	560.22	PASS	AC=1;AF=0.717;AN=2;DP=1066;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:593,0,592:5,16,8,15
chr2	109092121	.	G	A	765.17	PASS	AC=1;AF=0.682;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:574,0,580:15,8,13,11
chr2	109098994	.	T	C	205.39	PASS	AC=1;AF=0.674;AN=2;DP=376;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:336,0,465:3,12,3,8
chr2	109099477	.	A	G	671.97	PASS	AC=1;AF=0.717;AN=2;DP=1685;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1016,0,984:22,20,20,23
chr2	109099572	.	C	G	1810.75	PASS	AC=2;AF=0.989;AN=2;DP=2010;MQ=60;MQRankSum=-1.092;ReadPosRankSum=-0.705;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1931,198,0:0,0,33,33
chr2	109103108	.	C	T	883.77	PASS	AC=1;AF=0.674;AN=2;DP=1876;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,58:95:99:1662,0,869:13,24,18,40
chr2	109104356	.	ATT	AT,A	164.51	PASS	AC=1,0;AF=0.35,0.15;AN=2;DP=1227;set=variant3-variant4-filterInvariant5-variant7-variant11-variant13-variant15-variant19-filterInvariant21-filterInvariant22-variant23-filterInvariant28-filterInvariant29-filterInvariant30-variant32-variant33-variant36-filterInvariant40-filterInvariant42-filterInvariant43	GT:DP:GQ:SB	0/1:40:99:7,13,4,16
chr2	109106381	.	A	G	1139.85	PASS	AC=1;AF=0.674;AN=2;DP=1870;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,40:93:99:937,0,1324:34,19,25,15
chr2	109116613	.	CAT	C	551.74	PASS	AC=1;AF=0.722;AN=2;DP=779;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:962,0,1017:13,15,15,12
chr2	109123950	.	T	A	167.47	PASS	AC=1;AF=0.684;AN=2;DP=191;FractionInformativeReads=1;set=variant2-variant6-variant8-variant11-variant15-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:258,0,224:6,2,7,0
chr2	109123988	.	C	CT,CTT	180.8	PASS	AC=1,0;AF=0.548,0.119;AN=2;DP=544;set=variant2-variant6-variant8-variant11-variant12-variant15-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:38:99:14,7,13,4
chr2	109277239	.	C	T	865.51	PASS	AC=1;AF=0.674;AN=2;DP=1530;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:606,0,766:11,20,10,16
chr2	109292280	.	T	C	4280.65	PASS	AC=2;AF=0.943;AN=2;DP=8245;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,253:253:99:7822,758,0:0,0,154,99
chr2	109294588	.	A	T	1412.03	PASS	AC=1;AF=0.679;AN=2;DP=3083;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,59:121:99:1593,0,1719:16,46,20,39
chr2	109296984	.	C	A	157.99	PASS	AC=1;AF=0.821;AN=2;DP=73;set=variant7-variant11-variant15-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:30:120,0,30:1,0,3,0
chr2	109301074	.	C	A	5166.51	PASS	AC=1;AF=0.726;AN=2;DP=4552;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,85:178:99:2092,0,2151:47,46,42,43
chr2	109301115	.	T	TA	2873.56	PASS	AC=1;AF=0.679;AN=2;DP=4217;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,92:197:99:3112,0,3592:52,53,44,48
chr2	109301398	.	C	A	18992	PASS	AC=2;AF=1;AN=2;DP=22080;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,581:581:99:18261,1737,0:0,0,306,275
chr2	109301687	.	G	C	8073.57	PASS	AC=1;AF=0.726;AN=2;DP=6488;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,100:235:99:2464,0,3683:79,56,55,45
chr2	109301841	.	G	A	4825.37	PASS	AC=1;AF=0.679;AN=2;DP=8952;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,216:401:99:5519,0,4300:89,96,104,112
chr2	109301889	.	G	GT	2840.64	PASS	AC=1;AF=0.619;AN=2;DP=5978;set=variant2-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant26-variant31-variant32-variant35-variant36-variant38-variant-variant42	GT:AD:DP:GQ:PL:SB	0/1:178,135:313:99:2965,0,4382:82,96,66,69
chr2	109302388	.	G	A	6863.97	PASS	AC=1;AF=0.726;AN=2;DP=5083;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,98:201:99:2530,0,3052:28,75,29,69
chr2	109302699	.	C	T	315.3	PASS	AC=1;AF=0.768;AN=2;DP=246;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:185,0,211:5,1,5,1
chr2	109370225	.	C	A	855.08	PASS	AC=1;AF=0.5;AN=2;DP=234;set=variant15-variant20-variant30	GT:AD:DP:GQ:PL:SB	0/1:49,37:86:99:883,0,1296:31,18,26,11
chr2	109389463	.	G	A	3157.69	PASS	AC=2;AF=1;AN=2;DP=5158;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:4996,509,0:0,0,71,99
chr2	109393522	.	TG	T	961.97	PASS	AC=2;AF=1;AN=2;DP=1458;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1169,105,0:0,0,25,10
chr2	109411248	.	GAATAT	G	450.49	PASS	AC=2;AF=0.756;AN=2;DP=690;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:52:766,52,0:0,0,1,16
chr2	109429146	.	T	A	2799.86	PASS	AC=2;AF=0.763;AN=2;DP=2774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3356,324,0:0,0,66,42
chr2	109490104	.	A	G	535.17	PASS	AC=2;AF=1;AN=2;DP=484;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:344,24,0:0,0,1,7
chr2	109492907	.	A	G	1650.3	PASS	AC=2;AF=0.932;AN=2;DP=6774;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6011,582,0:0,0,81,113
chr2	109493002	.	T	A	537.21	PASS	AC=2;AF=0.78;AN=2;DP=1939;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2071,174,0:0,0,14,44
chr2	109510937	.	G	A	76.69	PASS	AC=2;AF=0.714;AN=2;DP=430;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:277,33,0:0,0,6,5
chr2	109511765	.	A	G	3848.09	PASS	AC=2;AF=0.774;AN=2;DP=12710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,344:344:99:10948,1028,0:0,0,155,189
chr2	109512234	.	T	C	288.11	PASS	AC=2;AF=0.786;AN=2;DP=2106;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2358,225,0:0,0,33,42
chr2	109513321	.	C	A	866.01	PASS	AC=2;AF=0.864;AN=2;DP=5660;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,146:147:99:4681,429,0:0,1,70,76
chr2	109513654	.	G	A	69.16	PASS	AC=2;AF=0.774;AN=2;DP=4278;MQ=60;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3282,335,0:0,0,44,68
chr2	109513786	.	A	T	125.53	PASS	AC=2;AF=0.8;AN=2;DP=354;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:376,30,0:0,0,3,7
chr2	109522720	.	G	A	646.44	PASS	AC=2;AF=0.774;AN=2;DP=2184;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,74:75:99:2263,212,0:0,1,46,28
chr2	109524105	.	CA	C	286.67	PASS	AC=2;AF=0.833;AN=2;DP=912;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,29:30:63:780,63,0:1,0,21,8
chr2	109526969	.	G	A	1694.17	PASS	AC=2;AF=0.864;AN=2;DP=8474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,238:238:99:7009,710,0:0,0,124,114
chr2	109527087	.	G	A	1579.31	PASS	AC=2;AF=0.762;AN=2;DP=4645;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4210,405,0:0,0,54,82
chr2	109527373	.	A	G	1538.26	PASS	AC=2;AF=0.864;AN=2;DP=6192;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5549,540,0:0,0,90,90
chr2	109529404	.	CTT	CT,CTTTT,C,CTTT	90.71	PASS	AC=0,0,1,0;AF=0.167,0.083,0.083,0.167;AN=2;DP=132;MQ=60;set=variant8-variant10-filterInvariant15-variant31-filterInvariant33-variant44	GT:DP:GQ:SB	0/3:12:72:2,7,1,2
chr2	109539653	.	A	G	624.2	PASS	AC=2;AF=0.864;AN=2;DP=2304;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2227,213,0:0,0,45,26
chr2	109547280	.	G	A	1010.53	PASS	AC=2;AF=0.75;AN=2;DP=74;FractionInformativeReads=1;MQ=60;MQRankSum=0.771;ReadPosRankSum=0.902;set=variant15-variant17	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1039,98,0:0,0,25,8
chr2	109745176	.	G	A	534.65	PASS	AC=2;AF=0.989;AN=2;DP=959;MQ=60;MQRankSum=0.953;ReadPosRankSum=2.307;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:697,60,0:0,0,16,4
chr2	109745782	.	TGGCCGGTCCCCGCCACGCA	T	2907.5	PASS	AC=2;AF=0.989;AN=2;DP=4378;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3558,249,0:0,0,31,48
chr2	109929958	.	A	G	913.86	PASS	AC=1;AF=0.672;AN=2;DP=1609;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:949,0,598:13,7,23,7
chr2	109964431	.	C	T	592.53	PASS	AC=1;AF=0.567;AN=2;DP=1063;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant27-variant31-variant33-variant36-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:662,0,840:16,21,9,19
chr2	109988215	.	C	G	64.98	PASS	AC=2;AF=0.671;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:65:805,65,0:0,0,3,19
chr2	110260993	.	C	T	2088.05	PASS	AC=2;AF=0.932;AN=2;DP=2609;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2877,239,0:0,0,18,62
chr2	110261564	.	C	T	794.65	PASS	AC=1;AF=0.571;AN=2;DP=293;MQ=60;set=variant6-variant15-variant20-variant22-variant27-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:30,13:43:99:301,0,716:16,14,5,8
chr2	110261696	.	C	T	189.32	PASS	AC=1;AF=0.6;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant8-variant11-variant15-variant19-variant20-variant22-variant26-variant27-variant28-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:616,0,600:9,11,11,12
chr2	110301085	.	T	A	814.86	PASS	AC=1;AF=0.563;AN=2;DP=490;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:777,0,785:19,12,20,10
chr2	110302133	.	AG	A	695.5	PASS	AC=1;AF=0.563;AN=2;DP=313;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:489,0,702:8,12,4,11
chr2	110322236	.	A	T	823.36	PASS	AC=1;AF=0.563;AN=2;DP=564;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:50,31:81:99:658,0,1278:21,29,12,19
chr2	110332130	.	G	C	863.81	PASS	AC=1;AF=0.563;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant39	GT:AD:DP:GQ:PL:SB	0/1:45,28:73:99:578,0,1274:33,12,18,10
chr2	110350986	.	C	CTTTTTTTT,CTTTTTT,CTTTTTTT,CTTTTTTTTT	323.47	PASS	AC=2,0,0,0;AF=0.35,0.1,0.15,0.05;AN=2;DP=135;MQ=60;set=variant3-variant9-variant11-variant15-variant16-variant22-variant31-variant33-variant39-variant40	GT:DP:GQ:SB	1/1:6:17:0,0,0,6
chr2	110370895	.	G	A	707.23	PASS	AC=1;AF=0.5;AN=2;DP=622;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:53,28:81:99:670,0,1431:29,24,14,14
chr2	110371248	.	C	A	164.11	PASS	AC=1;AF=0.556;AN=2;DP=92;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:78,0,74:2,1,2,2
chr2	110371493	.	A	T	499.26	PASS	AC=1;AF=0.552;AN=2;DP=870;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,11:36:99:257,0,749:16,9,9,2
chr2	110371622	.	C	G	3335.51	PASS	AC=2;AF=1;AN=2;DP=5137;FS=0;MQ=60;MQRankSum=1.338;ReadPosRankSum=-0.157;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4767,471,0:0,0,96,61
chr2	110372192	.	A	G	2494.64	PASS	AC=2;AF=1;AN=2;DP=3780;FS=0;MQ=60;MQRankSum=0.197;ReadPosRankSum=-0.945;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3150,328,0:0,0,56,54
chr2	110373805	.	A	G	2002.09	PASS	AC=1;AF=0.5;AN=2;DP=1431;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:85,86:171:99:2129,0,2237:31,54,35,51
chr2	110373849	.	A	G	956.78	PASS	AC=1;AF=0.5;AN=2;DP=942;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:55,56:111:99:1616,0,1484:23,32,21,35
chr2	110373919	.	G	A	777	PASS	AC=1;AF=0.5;AN=2;DP=691;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:53,45:98:99:1498,0,1697:30,23,28,17
chr2	110373938	.	T	G	1019.29	PASS	AC=1;AF=0.552;AN=2;DP=2417;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,50:111:99:1605,0,1797:41,20,31,19
chr2	110374215	.	T	C	2823.1	PASS	AC=1;AF=0.517;AN=2;DP=6300;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,122:268:99:3211,0,4016:82,64,67,55
chr2	110375025	.	C	T	2180.77	PASS	AC=1;AF=0.517;AN=2;DP=4789;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:132,89:221:99:2209,0,3547:61,71,42,47
chr2	110375151	.	A	G	1274.13	PASS	AC=1;AF=0.5;AN=2;DP=781;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant19-variant20-variant22-variant27-variant33-variant36-variant39	GT:AD:DP:GQ:PL:SB	0/1:55,71:126:99:1754,0,1348:24,31,30,41
chr2	110375592	.	CAAAAA	C,CAAAA,CAAA	384.22	PASS	AC=0,0,1;AF=0.266,0.203,0.063;AN=2;DP=835;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-filterInvariant35-variant36-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/3:12:99:6,1,4,1
chr2	110855123	.	G	T	1199.86	PASS	AC=2;AF=0.966;AN=2;DP=5600;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4476,476,0:0,0,92,67
chr2	110855270	.	TG	T	2393.96	PASS	AC=1;AF=0.605;AN=2;DP=1393;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant23-variant25-variant28-variant29-variant30-variant32-variant38-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1242,0,971:13,23,15,28
chr2	110873470	.	GA	GAA,G	746.48	PASS	AC=1,0;AF=0.382,0.132;AN=2;DP=3712;set=variant2-filterInvariant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-filterInvariant18-variant19-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:98:99:27,22,27,22
chr2	110880187	.	C	T	2550.5	PASS	AC=2;AF=1;AN=2;DP=3873;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3320,305,0:0,0,66,36
chr2	110882699	.	A	G	672.67	PASS	AC=1;AF=0.62;AN=2;DP=1569;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,37:82:99:989,0,1034:27,18,26,11
chr2	110886686	.	A	AGACCAGAT	831.82	PASS	AC=1;AF=0.62;AN=2;DP=1472;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:1481,0,2877:20,11,18,18
chr2	110889108	.	C	T	142.15	PASS	AC=1;AF=0.625;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:229,0,185:5,2,6,1
chr2	110905664	.	G	A	387.05	PASS	AC=1;AF=0.62;AN=2;DP=638;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:443,0,586:5,14,4,11
chr2	110919041	.	A	G	330.23	PASS	AC=1;AF=0.708;AN=2;DP=431;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:232,0,300:8,0,5,4
chr2	110919321	.	C	T	490	PASS	AC=1;AF=0.62;AN=2;DP=761;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:412,0,214:4,6,5,10
chr2	110922703	.	C	T	1321.18	PASS	AC=1;AF=0.62;AN=2;DP=3178;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,70:146:99:1365,0,1653:37,39,32,38
chr2	110935867	.	A	G	2352.4	PASS	AC=1;AF=0.62;AN=2;DP=6449;set=variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,169:348:99:4114,0,4402:75,104,74,95
chr2	110958925	.	C	A	291.47	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:354,0,218:6,1,8,5
chr2	110959026	.	G	T	670.88	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant30	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:445,0,534:13,11,7,12
chr2	110959898	.	C	G	1027.84	PASS	AC=1;AF=0.62;AN=2;DP=2402;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1209,0,1398:32,22,32,15
chr2	111058854	.	G	A	515.77	PASS	AC=2;AF=0.984;AN=2;DP=820;FS=0;MQRankSum=4.4;ReadPosRankSum=1.156;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:282,36,0:0,0,6,6
chr2	111406724	.	T	TCA,TCACA	256.11	PASS	AC=0,1;AF=0.463,0.093;AN=2;DP=517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant43	GT:DP:GQ:SB	0/2:22:99:12,5,3,2
chr2	111406968	.	GA	GAA,G	39.64	DRAGENHardINDEL	AC=1,0;AF=0.214,0.286;AN=2;DP=253;MQ=60;set=FilteredInAll	GT:DP:GQ:SB	0/1:46:77:11,25,2,8
chr2	111744406	.	G	A	111.93	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant15-variant16-variant17-variant19-variant20-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:265,0,175:5,1,7,0
chr2	111753449	.	G	C	1433.35	PASS	AC=1;AF=0.591;AN=2;DP=4156;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,71:174:99:1614,0,2690:61,42,42,29
chr2	111789092	.	G	A	2754.53	PASS	AC=1;AF=0.556;AN=2;DP=2064;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant32-variant33-variant36-variant37-variant38-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,36:96:99:950,0,1619:38,22,27,9
chr2	111851212	.	C	T	121.23	PASS	AC=1;AF=0.531;AN=2;DP=311;FractionInformativeReads=1;set=variant-variant4-variant5-variant10-variant12-variant14-variant15-variant20-variant23-variant24-variant30-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:254,0,338:3,8,1,6
chr2	111851499	.	A	G	8467.19	PASS	AC=1;AF=0.586;AN=2;DP=7215;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,150:299:99:3670,0,3810:87,62,88,62
chr2	111878556	.	TGCCGCCGCCGCC	TGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCCGCC,T,TGCCGCCGCCGCCGCC,TGCC	1561.47	PASS	AC=2,0,0,0,0;AF=0.762,0.012,0.071,0.036,0.012;AN=2;DP=7143;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:135:99:0,0,69,66
chr2	111878565	.	C	T	1298.09	PASS	AC=1;AF=0.808;AN=2;DP=6642;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,61:160:99:1128,0,2452:53,46,30,31
chr2	111886180	.	CTT	CT,CTTT,CTTTT,C	229.91	PASS	AC=1,0,0,0;AF=0.388,0.138,0.013,0.013;AN=2;DP=2417;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:73:99:31,7,30,5
chr2	111907691	.	T	C	1060.81	PASS	AC=1;AF=0.8;AN=2;DP=2310;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,50:88:99:1244,0,852:23,15,27,23
chr2	112536264	.	G	T	140.39	PASS	AC=2;AF=1;AN=2;DP=473;FS=0;MQRankSum=-1.156;ReadPosRankSum=-0.771;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:44:531,44,0:1,0,15,2
chr2	112582523	.	G	A	685.13	PASS	AC=1;AF=0.66;AN=2;DP=1460;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant18-variant22-variant23-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:604,0,650:12,13,13,10
chr2	112588751	.	C	T	303.14	PASS	AC=1;AF=0.75;AN=2;DP=669;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:319,0,265:7,2,8,3
chr2	112590989	.	A	T	311.09	PASS	AC=1;AF=0.763;AN=2;DP=1183;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:398,0,458:7,13,7,11
chr2	112591057	.	CA	C	48.85	PASS	AC=1;AF=0.571;AN=2;DP=64;set=variant7-variant15-variant22-variant35-variant37-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:113,0,172:2,4,0,4
chr2	112605465	.	T	C	797.01	PASS	AC=2;AF=1;AN=2;DP=1426;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:749,78,0:0,0,10,16
chr2	112616059	.	C	T	302.38	PASS	AC=1;AF=0.55;AN=2;DP=195;FractionInformativeReads=1;set=variant7-variant13-variant15-variant18-variant22-variant30-variant31-variant35-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:328,0,410:1,11,1,10
chr2	112621498	.	GA	G	349.93	PASS	AC=1;AF=0.66;AN=2;DP=483;set=variant3-variant7-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:78:291,0,78:1,4,1,12
chr2	112622642	.	C	T	253.66	PASS	AC=1;AF=0.7;AN=2;DP=383;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant18-variant22-variant23-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:450,0,911:5,6,2,10
chr2	112622643	.	A	G	293.15	PASS	AC=1;AF=0.77;AN=2;DP=553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:450,0,911:5,6,1,10
chr2	112622650	.	T	C	166.67	PASS	AC=1;AF=0.77;AN=2;DP=456;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:306,0,876:4,6,0,7
chr2	112636685	.	G	A	209.71	PASS	AC=1;AF=0.786;AN=2;DP=309;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:190,0,168:0,5,0,6
chr2	112641111	.	CA	C	37.66	PASS	AC=1;AF=0.5;AN=2;DP=1084;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant5-filterInvariant6-variant11-filterInvariant15-filterInvariant17-filterInvariant20-filterInvariant22-filterInvariant26-filterInvariant29-filterInvariant32-filterInvariant34-filterInvariant37-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:48,12:60:99:121,0,1011:29,19,8,4
chr2	112641256	.	G	A	831.08	PASS	AC=2;AF=1;AN=2;DP=1569;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1428,105,0:0,0,12,23
chr2	112641257	.	A	G	422.73	PASS	AC=1;AF=0.769;AN=2;DP=1376;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,24:35:99:751,0,248:4,7,8,16
chr2	112641283	.	A	G	362.35	PASS	AC=1;AF=0.756;AN=2;DP=942;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,20:25:99:697,0,109:2,3,4,16
chr2	112641854	.	C	T	1095.53	PASS	AC=1;AF=0.643;AN=2;DP=4484;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,78:175:99:1840,0,2411:54,43,41,37
chr2	112641909	.	C	T	1108.61	PASS	AC=1;AF=0.737;AN=2;DP=5205;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,82:164:99:1950,0,1972:41,41,37,45
chr2	112656063	.	T	C	71.69	PASS	AC=2;AF=0.694;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant27-variant29-variant32-variant34-variant39-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:115,9,0:0,0,1,2
chr2	112686988	.	G	A	2265.61	PASS	AC=2;AF=0.646;AN=2;DP=3096;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4326,436,0:0,0,69,77
chr2	112687157	.	A	ATATTTATTTATTTATT,ATATTTATTTATT,ATATTTATTTATTTATTTATTTATTTATT,ATATTTATTTATTTATTTATTTATT	159.23	PASS	AC=0,0,0,2;AF=0.119,0.381,0.167,0.167;AN=2;DP=300;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant29-variant30-variant33-variant37-variant43-variant44	GT:DP:GQ:SB	4/4:3:6:0,0,0,3
chr2	112702647	.	C	T	4017.85	PASS	AC=2;AF=0.646;AN=2;DP=6999;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,352:352:99:11243,1055,0:0,0,140,212
chr2	112704862	.	A	G,C	180.71	PASS	AC=2,0;AF=0.605,0.132;AN=2;DP=907;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:18:52:0,0,9,9
chr2	112705157	.	T	C	360.92	PASS	AC=2;AF=0.769;AN=2;DP=1460;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1575,132,0:0,0,11,33
chr2	112705185	.	G	T	225.34	PASS	AC=2;AF=0.743;AN=2;DP=830;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:741,63,0:0,0,5,16
chr2	112725684	.	A	ATGTGTG	1432.82	PASS	AC=2;AF=0.769;AN=2;DP=4161;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:5849,410,0:0,0,87,43
chr2	112740373	.	G	A	309.33	PASS	AC=2;AF=0.769;AN=2;DP=1046;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1292,111,0:0,0,28,9
chr2	112751928	.	G	A	1279.96	PASS	AC=2;AF=0.769;AN=2;DP=5457;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5860,584,0:0,0,111,84
chr2	112752142	.	A	C	246.31	PASS	AC=2;AF=0.769;AN=2;DP=1773;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2163,168,0:0,0,9,47
chr2	112752362	.	GA	G	49.44	PASS	AC=2;AF=0.75;AN=2;DP=27;MQ=60;set=variant3-variant8-variant15-variant24	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:14:111,14,0:0,0,3,2
chr2	112752880	.	G	A	1422.91	PASS	AC=2;AF=0.769;AN=2;DP=3735;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3878,366,0:0,0,66,56
chr2	112753097	.	A	C	1716.33	PASS	AC=2;AF=0.769;AN=2;DP=4898;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3737,369,0:0,0,45,78
chr2	112753781	.	TA	T	1610.55	PASS	AC=2;AF=0.769;AN=2;DP=3665;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3640,307,0:0,0,46,56
chr2	112753883	.	C	T	998.7	PASS	AC=2;AF=0.769;AN=2;DP=2167;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2188,194,0:0,0,35,30
chr2	112753950	.	G	A	862.92	PASS	AC=2;AF=0.646;AN=2;DP=1484;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1681,154,0:0,0,33,19
chr2	112754720	.	A	C	442.73	PASS	AC=2;AF=0.652;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:745,57,0:0,0,18,1
chr2	112754880	.	G	A	1792.02	PASS	AC=2;AF=0.646;AN=2;DP=3476;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5401,554,0:0,0,93,93
chr2	112754943	.	C	T	2301.58	PASS	AC=2;AF=0.646;AN=2;DP=3895;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,171:172:99:5504,505,0:1,0,80,91
chr2	112755001	.	A	G	1207.29	PASS	AC=2;AF=0.769;AN=2;DP=4790;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3756,354,0:0,0,48,70
chr2	112761653	.	C	G	582.43	PASS	AC=2;AF=0.769;AN=2;DP=1425;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1673,144,0:0,0,14,34
chr2	112765973	.	A	G	1065.66	PASS	AC=2;AF=0.769;AN=2;DP=3859;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3780,371,0:0,0,72,52
chr2	112766262	.	A	G	659.15	PASS	AC=2;AF=0.769;AN=2;DP=2009;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2392,216,0:0,0,39,33
chr2	112770770	.	A	G	503.26	PASS	AC=2;AF=0.769;AN=2;DP=2758;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,83:85:99:2527,204,0:1,1,42,41
chr2	112770798	.	T	C	1007.34	PASS	AC=2;AF=0.769;AN=2;DP=3123;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,97:99:99:3092,246,0:1,1,46,51
chr2	112773366	.	A	G	813.81	PASS	AC=2;AF=0.769;AN=2;DP=2280;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,81:82:99:2327,200,0:1,0,44,37
chr2	112773528	.	TCTTGTAC	T	1456.67	PASS	AC=2;AF=0.769;AN=2;DP=2466;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2916,199,0:0,0,25,41
chr2	112779286	.	A	ATC	407.07	PASS	AC=2;AF=0.782;AN=2;DP=898;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1464,106,0:0,0,6,29
chr2	112785775	.	T	C	153.09	PASS	AC=2;AF=0.683;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:550,45,0:0,0,12,3
chr2	112812842	.	T	C	441.34	PASS	AC=2;AF=0.817;AN=2;DP=2970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2814,193,0:0,0,37,23
chr2	112812856	.	C	G	2269.25	PASS	AC=2;AF=0.654;AN=2;DP=2122;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:3114,228,0:0,0,44,30
chr2	112813066	.	G	C	1045.5	PASS	AC=2;AF=0.654;AN=2;DP=1673;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2025,192,0:0,0,29,35
chr2	112813163	.	G	A	702.19	PASS	AC=2;AF=0.654;AN=2;DP=1243;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1753,138,0:0,0,26,20
chr2	112813391	.	C	G	2136.74	PASS	AC=2;AF=0.817;AN=2;DP=6712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5075,506,0:0,0,62,107
chr2	112832535	.	CAAT	C	1582.53	PASS	AC=2;AF=0.694;AN=2;DP=2096;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3105,208,0:0,0,33,36
chr2	112832684	.	G	A	518.67	PASS	AC=2;AF=1;AN=2;DP=811;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:679,48,0:0,0,5,11
chr2	112847164	.	C	T	1452.68	PASS	AC=2;AF=0.688;AN=2;DP=3800;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4225,426,0:0,0,78,65
chr2	112856165	.	C	A	714.4	PASS	AC=2;AF=0.782;AN=2;DP=3249;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3692,373,0:0,0,71,54
chr2	112858122	.	C	T	175.15	PASS	AC=2;AF=0.694;AN=2;DP=647;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:736,62,0:0,0,17,4
chr2	112865517	.	G	C	2143.62	PASS	AC=2;AF=1;AN=2;DP=2836;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2341,227,0:0,0,31,45
chr2	112874281	.	A	C	383.61	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2778;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:96,25:121:99:320,0,4464:5,91,25,0
chr2	112875039	.	A	G	2705.21	PASS	AC=2;AF=0.764;AN=2;DP=7309;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,276:277:99:8668,817,0:1,0,133,143
chr2	112917102	.	G	C	250.13	PASS	AC=2;AF=0.694;AN=2;DP=1249;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1749,156,0:0,0,37,15
chr2	112945188	.	T	A	978.94	PASS	AC=2;AF=0.808;AN=2;DP=4320;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4425,439,0:0,0,64,83
chr2	113097277	.	C	CT	1123.79	PASS	AC=1;AF=0.5;AN=2;DP=528;set=variant9-variant15-variant24-variant32	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:1387,0,1318:45,25,46,27
chr2	113138227	.	CA	CAAA,CAAAA,C,CAAAAA,CAA	61.62	PASS	AC=0,0,1,0,0;AF=0.125,0.15,0.1,0.075,0.075;AN=2;DP=323;set=variant-variant3-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant19-filterInvariant21-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant42	GT:DP:GQ:SB	0/3:12:54:5,1,6,0
chr2	113145814	.	C	T	2045.82	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=1388;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:789,93,0:0,0,20,11
chr2	113147159	.	G	A	1680.82	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=13290;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:216,173:389:99:3146,0,4327:86,130,66,107
chr2	113147238	.	A	G	201.83	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1657;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:44,23:67:99:430,0,978:8,36,0,23
chr2	113157160	.	T	A	44.64	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=45;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:17:73,0,17:1,0,3,0
chr2	113258671	.	G	A	63.87	PASS	AC=1;AF=0.586;AN=2;DP=402;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:159,0,288:8,4,5,2
chr2	113258824	.	G	C	353.05	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0.98;FractionInformativeReads=1;MQ=53.86;MQRankSum=-6.585;QD=5.04;ReadPosRankSum=-2.081;SOR=0.885;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:48,22:70:99:381,0,1124:22,26,9,13
chr2	113277707	.	CAAAA	CAA,CAAA,CAAAAA,C	168.15	PASS	AC=0,1,0,0;AF=0.14,0.24,0.1,0.02;AN=2;DP=906;set=variant-variant3-variant5-variant8-filterInvariant9-filterInvariant10-variant11-variant13-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant36-variant37-variant38-variant39-variant44	GT:DP:GQ:SB	0/2:35:99:17,4,12,2
chr2	113278190	.	T	TTGTA	505.4	PASS	AC=1;AF=0.586;AN=2;DP=626;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:486,0,671:0,6,3,9
chr2	113278191	.	AGG	A	505.4	PASS	AC=1;AF=0.586;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:486,0,671:0,6,2,8
chr2	113286562	.	A	G	1958.33	PASS	AC=2;AF=0.977;AN=2;DP=3894;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3799,362,0:0,0,66,55
chr2	113287329	.	C	G	850.02	PASS	AC=2;AF=0.966;AN=2;DP=1439;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1174,125,0:0,0,24,18
chr2	113287964	.	A	G	237.91	PASS	AC=2;AF=0.83;AN=2;DP=1218;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1135,108,0:0,0,22,14
chr2	113288580	.	G	A	340.19	PASS	AC=2;AF=0.985;AN=2;DP=135;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=variant-variant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,3,1
chr2	113289032	.	A	G	1121.51	PASS	AC=1;AF=0.55;AN=2;DP=973;set=variant3-variant5-variant7-variant8-variant11-variant13-variant15-variant17-variant20-variant22-variant23-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:714,0,1168:19,18,15,12
chr2	113289701	.	T	G	2268.96	PASS	AC=2;AF=0.977;AN=2;DP=3347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3073,291,0:0,0,47,50
chr2	113300001	.	TTCCGGCGTGTACCGAGAGACTGGCG	T	3017.1	PASS	AC=1;AF=0.5;AN=2;DP=5403;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:280,189:469:99:4411,0,11772:144,136,118,71
chr2	113300283	.	C	G	871.33	PASS	AC=1;AF=0.5;AN=2;DP=856;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:1215,0,1107:3,29,2,32
chr2	113300330	.	G	A	827.87	PASS	AC=2;AF=0.744;AN=2;DP=1321;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1137,84,0:0,0,3,25
chr2	113305150	.	G	C	3445.72	PASS	AC=1;AF=0.689;AN=2;DP=3576;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,65:118:99:1870,0,1291:21,32,26,39
chr2	113306827	.	A	G	605.23	PASS	AC=1;AF=0.5;AN=2;DP=1147;MQ=60;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:985,0,1364:29,23,24,16
chr2	113308516	.	T	A	3408.64	PASS	AC=1;AF=0.75;AN=2;DP=4681;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,72:139:99:1718,0,1600:30,37,31,41
chr2	113308622	.	C	T	943.39	PASS	AC=1;AF=0.75;AN=2;DP=1169;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:625,0,477:3,12,1,16
chr2	113309473	.	C	T	4962.05	PASS	AC=1;AF=0.681;AN=2;DP=6137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,107:202:99:2490,0,2301:56,39,55,52
chr2	113310197	.	CT	C	1061.63	PASS	AC=2;AF=0.738;AN=2;DP=2142;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1624,177,0:0,0,42,17
chr2	113315735	.	CT	C	441.42	PASS	AC=1;AF=0.62;AN=2;DP=415;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:284,0,346:2,11,0,11
chr2	113321900	.	T	C	3980.36	PASS	AC=1;AF=0.607;AN=2;DP=3305;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,83:161:99:2050,0,1806:45,33,47,36
chr2	113322174	.	C	T	944.31	PASS	AC=1;AF=0.5;AN=2;DP=136;FractionInformativeReads=1;MQ=60;set=variant11-variant15	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:951,0,1144:13,30,7,25
chr2	113326281	.	C	G	1264.6	PASS	AC=2;AF=0.837;AN=2;DP=1918;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2077,192,0:0,0,44,20
chr2	113326502	.	C	T	2296.48	PASS	AC=2;AF=0.837;AN=2;DP=3117;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2835,260,0:0,0,31,56
chr2	113332421	.	T	C	730.52	PASS	AC=1;AF=0.5;AN=2;DP=615;MQ=60;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:34,45:79:99:1150,0,895:24,10,31,14
chr2	113333410	.	C	T	4090.78	PASS	AC=1;AF=0.5;AN=2;DP=4348;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:216,217:433:99:5294,0,5492:114,102,112,105
chr2	113333892	.	TTTG	T	7124.63	PASS	AC=1;AF=0.5;AN=2;DP=4702;MQ=60;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:213,232:445:99:8906,0,9338:93,120,94,138
chr2	113334357	.	G	A	849.52	PASS	AC=1;AF=0.6;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:355,0,246:7,0,7,3
chr2	113342051	.	G	T	431.75	PASS	AC=1;AF=0.5;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:401,0,701:15,8,13,7
chr2	113343488	.	A	T	321.38	PASS	AC=1;AF=0.7;AN=2;DP=394;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:228,0,187:4,1,6,2
chr2	113344047	.	T	C	5181.59	PASS	AC=2;AF=0.826;AN=2;DP=8777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:7537,742,0:0,0,108,140
chr2	113346413	.	C	G	1256.95	PASS	AC=1;AF=0.607;AN=2;DP=1385;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:732,0,479:10,11,12,16
chr2	113346512	.	A	C	1090.52	PASS	AC=2;AF=0.833;AN=2;DP=2140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1930,176,0:0,0,29,30
chr2	113346911	.	A	T	63.17	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant24	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:91:91,0,116:0,4,0,3
chr2	113403662	.	T	C	613.4	PASS	AC=2;AF=0.895;AN=2;DP=3669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3409,318,0:0,0,51,55
chr2	113404708	.	G	A	1773.12	PASS	AC=2;AF=0.721;AN=2;DP=5388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6666,632,0:0,0,83,128
chr2	113418276	.	A	AG	97.73	PASS	AC=2;AF=0.927;AN=2;DP=367;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,0,6
chr2	113418277	.	T	TG	97.73	PASS	AC=2;AF=0.927;AN=2;DP=353;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,0,6
chr2	113421334	.	G	A	244.19	PASS	AC=2;AF=0.895;AN=2;DP=1002;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:822,75,0:0,0,8,17
chr2	113479614	.	G	A	4281.42	PASS	AC=2;AF=0.694;AN=2;DP=6088;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,264:264:99:7966,789,0:0,0,128,136
chr2	113479745	.	AC	A	1816.51	PASS	AC=2;AF=0.977;AN=2;DP=4991;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3597,340,0:0,0,41,72
chr2	113480491	.	T	C	196.77	PASS	AC=2;AF=0.977;AN=2;DP=454;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,3,6
chr2	113480493	.	G	GCCCC	187.73	PASS	AC=2;AF=0.988;AN=2;DP=405;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.729;ReadPosRankSum=-1.307;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:30:450,30,0:0,0,3,6
chr2	113480495	.	A	AATCCTGC	187.73	PASS	AC=2;AF=0.988;AN=2;DP=392;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.001;ReadPosRankSum=-0.573;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:33:495,33,0:0,0,4,6
chr2	113480498	.	C	CTGGTGCTGCCCCCAAGGGGTG	97.73	PASS	AC=2;AF=0.988;AN=2;DP=388;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;ReadPosRankSum=-1.036;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:36:539,36,0:0,0,5,6
chr2	113480938	.	G	GCACACA,GCACACACACACA,GCACACACA,GCACACACACACACA,GCACACACACACACACACA,GCACACACACA,GCACACACACACACACA,GCA,GCACA	330.45	PASS	AC=1,0,0,1,0,0,0,0,0;AF=0.262,0.286,0.06,0.19,0.024,0.036,0.036,0.024,0.048;AN=2;DP=819;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	1/4:12:99:0,0,8,4
chr2	113481419	.	C	T	1272.87	PASS	AC=1;AF=0.5;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:66,46:112:99:1301,0,2256:32,34,25,21
chr2	113481439	.	T	A	1600.04	PASS	AC=2;AF=0.682;AN=2;DP=3348;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3874,290,0:0,0,50,48
chr2	113481547	.	A	G	2005.43	PASS	AC=2;AF=0.977;AN=2;DP=3981;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3205,282,0:0,0,49,45
chr2	113482779	.	A	C	2935.79	PASS	AC=2;AF=0.989;AN=2;DP=6794;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5168,491,0:0,0,86,78
chr2	113484319	.	G	A	1951.79	PASS	AC=2;AF=1;AN=2;DP=5751;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4772,472,0:0,0,67,91
chr2	113484353	.	A	G	1580.23	PASS	AC=2;AF=1;AN=2;DP=4206;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3651,339,0:0,0,40,73
chr2	113484441	.	T	G	291.71	PASS	AC=2;AF=0.661;AN=2;DP=637;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1001,84,0:0,0,5,23
chr2	113494250	.	T	C	10451.1	PASS	AC=2;AF=0.977;AN=2;DP=12447;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,324:324:99:10119,971,0:0,0,124,200
chr2	113495785	.	T	C	4091.71	PASS	AC=2;AF=0.977;AN=2;DP=4670;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3576,309,0:0,0,52,51
chr2	113513825	.	T	C	5415.05	PASS	AC=2;AF=0.977;AN=2;DP=6127;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5488,521,0:0,0,91,83
chr2	113514883	.	AT	A	59.91	PASS	AC=2;AF=0.813;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant37-variant39-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:262,21,0:0,0,1,6
chr2	113531715	.	T	TTGAA	7611.35	PASS	AC=2;AF=0.732;AN=2;DP=6534;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:8775,595,0:0,0,78,119
chr2	113532885	.	G	T	2732.22	PASS	AC=2;AF=0.732;AN=2;DP=3993;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4060,380,0:0,0,44,83
chr2	113535395	.	G	T	652.2	PASS	AC=2;AF=0.732;AN=2;DP=933;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:929,84,0:0,0,19,9
chr2	113535770	.	G	GGTGT,GGT,GGTGTGT,GGTGTGTGT	86.04	PASS	AC=2,0,0,0;AF=0.583,0.083,0.25,0.083;AN=2;DP=177;FS=0;set=variant3-variant4-variant10-variant14-variant15-variant18-variant20-variant25-variant31-variant37-variant40-variant43	GT:DP:GQ:SB	1/1:8:23:0,0,2,6
chr2	113540084	.	G	A	743.66	PASS	AC=2;AF=0.744;AN=2;DP=764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:604,54,0:0,0,12,6
chr2	113540205	.	G	T	2531.26	PASS	AC=2;AF=0.732;AN=2;DP=2701;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2339,219,0:0,0,48,25
chr2	113588302	.	C	T	237.96	PASS	AC=2;AF=0.536;AN=2;DP=321;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant29-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:482,39,0:0,0,2,11
chr2	113590467	.	C	T	388.06	PASS	AC=2;AF=0.536;AN=2;DP=1149;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant29-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1603,128,0:0,0,7,36
chr2	113594387	.	G	A	357.73	PASS	AC=2;AF=0.711;AN=2;DP=1016;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:697,69,0:0,0,10,13
chr2	113671303	.	T	C	3199.29	PASS	AC=2;AF=0.775;AN=2;DP=4049;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3769,383,0:0,0,68,60
chr2	113671378	.	G	T	2495.75	PASS	AC=2;AF=0.775;AN=2;DP=4089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3915,390,0:0,0,62,69
chr2	113671410	.	A	G	1817.15	PASS	AC=2;AF=0.775;AN=2;DP=3154;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2897,275,0:0,0,39,53
chr2	113671518	.	G	A	278.65	PASS	AC=2;AF=0.782;AN=2;DP=652;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:674,51,0:0,0,2,15
chr2	113675959	.	G	T	368.27	PASS	AC=2;AF=0.977;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:295,21,0:0,0,5,2
chr2	113676659	.	T	C	2325.36	PASS	AC=2;AF=0.932;AN=2;DP=2540;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3010,255,0:0,0,19,66
chr2	113742734	.	G	A	1034.35	PASS	AC=2;AF=0.756;AN=2;DP=1747;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1971,171,0:0,0,16,41
chr2	113763575	.	A	G	3801.07	PASS	AC=2;AF=0.756;AN=2;DP=5712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4633,437,0:0,0,60,86
chr2	113764419	.	T	C	516.91	PASS	AC=1;AF=0.542;AN=2;DP=288;MQ=60;set=variant2-variant9-variant11-variant15-variant18-variant23-variant24-variant25-variant26-variant30-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,10:36:99:235,0,716:7,19,2,8
chr2	113765780	.	C	T	155.6	PASS	AC=1;AF=0.5;AN=2;DP=602;MQ=60;set=variant-variant4-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant28-variant33-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:650,0,706:5,19,5,18
chr2	113779875	.	G	A	5514.73	PASS	AC=1;AF=0.658;AN=2;DP=7025;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:137,114:251:99:2836,0,3539:74,63,64,50
chr2	113783570	.	C	T	926.59	PASS	AC=1;AF=0.658;AN=2;DP=1004;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:634,0,617:15,2,17,3
chr2	113783909	.	A	T	1677.15	PASS	AC=2;AF=0.788;AN=2;DP=1946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2208,197,0:0,0,18,48
chr2	113785020	.	A	G	7717.19	PASS	AC=1;AF=0.697;AN=2;DP=8983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:156,145:301:99:3606,0,3986:100,56,85,60
chr2	113785202	.	G	A	9009.99	PASS	AC=1;AF=0.671;AN=2;DP=10359;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:162,170:332:99:4106,0,4546:60,102,76,94
chr2	113785727	.	A	G	683.69	PASS	AC=2;AF=0.977;AN=2;DP=1048;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:981,102,0:0,0,13,21
chr2	113786833	.	C	G	344.41	PASS	AC=2;AF=0.782;AN=2;DP=547;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:356,30,0:0,0,1,9
chr2	113789316	.	C	T	222.57	PASS	AC=1;AF=0.73;AN=2;DP=926;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:326,0,471:9,11,9,7
chr2	113816090	.	T	A	45.95	PASS	AC=1;AF=0.789;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:83:83,0,424:11,5,3,3
chr2	113816940	.	C	G	1132.93	PASS	AC=1;AF=0.636;AN=2;DP=2843;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,37:92:99:1427,0,2815:32,23,21,16
chr2	113816942	.	A	C	1132.93	PASS	AC=1;AF=0.636;AN=2;DP=2868;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:1427,0,2815:31,24,22,19
chr2	113818632	.	G	A	622.22	PASS	AC=1;AF=0.689;AN=2;DP=1872;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:875,0,620:3,17,7,22
chr2	113818702	.	G	C	146.08	PASS	AC=1;AF=0.703;AN=2;DP=543;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:290,0,118:0,4,2,8
chr2	113819614	.	T	C	683.09	PASS	AC=1;AF=0.689;AN=2;DP=2617;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1222,0,1123:30,13,31,19
chr2	113820476	.	T	C	535.79	PASS	AC=1;AF=0.689;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:389,0,614:9,12,7,5
chr2	113820530	.	A	G	502.35	PASS	AC=1;AF=0.689;AN=2;DP=1880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:526,0,485:11,10,9,7
chr2	113820580	.	C	A	584.43	PASS	AC=1;AF=0.689;AN=2;DP=2055;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:703,0,558:13,10,16,13
chr2	113820655	.	A	T	1016.38	PASS	AC=1;AF=0.689;AN=2;DP=2664;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,50:77:99:1434,0,636:16,11,30,20
chr2	113820672	.	A	G	1136.43	PASS	AC=1;AF=0.689;AN=2;DP=2876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,56:83:99:1618,0,642:16,11,30,26
chr2	113820732	.	T	C	1427.08	PASS	AC=1;AF=0.689;AN=2;DP=3466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,64:101:99:1651,0,836:21,16,35,29
chr2	113820814	.	C	G	1560.23	PASS	AC=1;AF=0.689;AN=2;DP=3975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,72:139:99:2036,0,1767:36,31,36,36
chr2	113821082	.	G	A	1236.56	PASS	AC=1;AF=0.5;AN=2;DP=909;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant15-variant21-variant28-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,70:154:99:1518,0,2020:46,38,40,30
chr2	113821117	.	C	T	1314.13	PASS	AC=1;AF=0.756;AN=2;DP=5923;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,85:191:99:1910,0,2544:60,46,46,39
chr2	113821200	.	T	C	1528.48	PASS	AC=1;AF=0.689;AN=2;DP=6398;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,105:234:99:2570,0,3243:67,62,52,53
chr2	113821653	.	T	C	251.41	PASS	AC=1;AF=0.689;AN=2;DP=1371;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,7:42:99:137,0,906:19,16,1,6
chr2	113822249	.	T	C	1479.14	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=3.308;FractionInformativeReads=0.992;MQ=60;MQRankSum=-0.373;QD=12.12;ReadPosRankSum=2.187;SOR=0.736;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:54,67:121:99:1507,0,1287:25,29,36,31
chr2	113825386	.	C	A	41.46	PASS	AC=1;AF=0.788;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:25:165,0,25:0,1,3,3
chr2	113829869	.	G	T	125.48	PASS	AC=2;AF=0.652;AN=2;DP=536;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:63:650,63,0:0,0,19,3
chr2	113830201	.	T	G	1912.71	PASS	AC=2;AF=0.711;AN=2;DP=4031;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,132:133:99:4436,354,0:1,0,80,52
chr2	113830563	.	G	A	657.83	PASS	AC=2;AF=0.689;AN=2;DP=1908;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1701,153,0:0,0,15,36
chr2	113830582	.	A	C	634.67	PASS	AC=2;AF=0.718;AN=2;DP=1473;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1429,117,0:0,0,9,30
chr2	113830688	.	G	A	106.77	PASS	AC=2;AF=0.758;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:209,15,0:0,0,0,5
chr2	113832312	.	T	C	1311.79	PASS	AC=2;AF=0.736;AN=2;DP=4030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3485,324,0:0,0,38,70
chr2	113832333	.	C	A	1165.89	PASS	AC=2;AF=0.75;AN=2;DP=3516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2585,255,0:0,0,28,58
chr2	113870725	.	T	G	151.64	PASS	AC=2;AF=0.667;AN=2;DP=538;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant11-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant35-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1046,90,0:0,0,9,21
chr2	113877495	.	G	T	584.72	PASS	AC=2;AF=0.886;AN=2;DP=1149;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1143,111,0:0,0,24,13
chr2	113887335	.	T	G	753.62	PASS	AC=1;AF=0.559;AN=2;DP=520;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant11-variant13-variant15-variant18-variant21-variant26-variant28-variant30-variant37-variant38-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,15:47:99:494,0,870:12,20,1,14
chr2	113888900	.	T	A	488.01	PASS	AC=2;AF=0.72;AN=2;DP=1490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1619,135,0:0,0,8,37
chr2	113890610	.	C	T	1568.85	PASS	AC=1;AF=0.5;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant30	GT:AD:DP:GQ:PL:SB	0/1:47,62:109:99:1597,0,1181:22,25,33,29
chr2	113940681	.	T	C	1697.15	PASS	AC=1;AF=0.6;AN=2;DP=2138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,57:94:99:1509,0,944:20,17,29,28
chr2	113940839	.	G	C	3058.34	PASS	AC=1;AF=0.6;AN=2;DP=5958;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,125:254:99:3044,0,3160:69,60,70,55
chr2	113942903	.	A	C	939	PASS	AC=1;AF=0.6;AN=2;DP=1519;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:944,0,707:10,14,16,19
chr2	113943096	.	G	A	1547.56	PASS	AC=1;AF=0.5;AN=2;DP=420;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant36-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,59:116:99:1438,0,1344:31,26,33,26
chr2	113943470	.	A	G	4001.09	PASS	AC=1;AF=0.597;AN=2;DP=4758;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,76:166:99:1787,0,2115:47,43,40,36
chr2	113950506	.	T	A	78.89	PASS	AC=1;AF=0.5;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant15	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:531,0,246:5,5,13,4
chr2	113953401	.	A	G	814.17	PASS	AC=2;AF=1;AN=2;DP=3820;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2924,267,0:0,0,39,50
chr2	113953657	.	A	C	2274.28	PASS	AC=1;AF=0.621;AN=2;DP=3825;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,75:136:99:1977,0,1418:31,30,41,34
chr2	113953952	.	T	C	775.97	PASS	AC=1;AF=0.621;AN=2;DP=1380;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:729,0,394:8,10,8,19
chr2	113953973	.	A	AT	580.73	PASS	AC=1;AF=0.621;AN=2;DP=989;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:906,0,871:7,10,5,18
chr2	113953974	.	GACA	G	580.73	PASS	AC=1;AF=0.621;AN=2;DP=953;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:906,0,871:7,10,5,17
chr2	113954006	.	A	G	362.08	PASS	AC=1;AF=0.625;AN=2;DP=495;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:310,0,288:2,7,1,8
chr2	113954879	.	A	C	3799.47	PASS	AC=1;AF=0.621;AN=2;DP=3105;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,62:125:99:1339,0,1508:31,32,31,31
chr2	113955074	.	G	A	3815.33	PASS	AC=1;AF=0.621;AN=2;DP=4373;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,74:172:99:1788,0,2754:49,49,42,32
chr2	113956371	.	G	C	5454.3	PASS	AC=1;AF=0.621;AN=2;DP=6874;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,132:245:99:3303,0,2786:58,55,66,66
chr2	113956821	.	C	G	2597.97	PASS	AC=1;AF=0.621;AN=2;DP=3416;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,55:125:99:1379,0,1889:21,49,18,37
chr2	113959452	.	A	G	2238	PASS	AC=2;AF=1;AN=2;DP=3425;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2895,282,0:0,0,54,40
chr2	113973632	.	G	A	869.92	PASS	AC=1;AF=0.621;AN=2;DP=1280;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,18:52:99:376,0,884:20,14,9,9
chr2	113973801	.	T	C	1286.45	PASS	AC=1;AF=0.726;AN=2;DP=2385;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:753,0,874:15,18,17,13
chr2	113973964	.	T	C	1544.39	PASS	AC=1;AF=0.621;AN=2;DP=2203;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,43:104:99:1013,0,1456:30,31,20,23
chr2	113975110	.	A	G	2596.78	PASS	AC=1;AF=0.543;AN=2;DP=1135;MQ=60;set=variant3-variant4-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:857,0,638:11,15,18,16
chr2	113977862	.	T	G	201.22	PASS	AC=2;AF=1;AN=2;DP=593;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.552;ReadPosRankSum=1.552;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:398,39,0:0,0,4,9
chr2	113994417	.	G	T	158.3	PASS	AC=1;AF=0.611;AN=2;DP=1450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:301,0,557:6,14,3,13
chr2	113996644	.	GC	G	549.58	PASS	AC=1;AF=0.5;AN=2;DP=384;set=variant-variant15	GT:AD:DP:GQ:PL:SB	0/1:118,55:173:99:759,0,3186:43,75,20,35
chr2	114000458	.	C	A	1227.62	PASS	AC=2;AF=1;AN=2;DP=2052;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1821,176,0:0,0,22,37
chr2	114017006	.	G	A	1162.09	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.826;FractionInformativeReads=0.988;MQ=60;MQRankSum=-0.145;QD=13.67;ReadPosRankSum=0.699;SOR=0.577;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:35,49:84:99:1190,0,880:19,16,25,24
chr2	114020848	.	T	G	916.27	PASS	AC=2;AF=0.679;AN=2;DP=2384;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2200,187,0:0,0,43,19
chr2	114035750	.	C	A	271.31	PASS	AC=1;AF=0.5;AN=2;DP=177;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant24-variant30-variant32-variant34	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:492,0,694:19,1,13,3
chr2	114035923	.	A	G	7055.03	PASS	AC=1;AF=0.519;AN=2;DP=18519;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant37-variant39-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:420,400:820:99:9191,0,9501:236,184,224,176
chr2	114036436	.	G	C	2992.08	PASS	AC=2;AF=0.989;AN=2;DP=4786;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3727,380,0:0,0,70,57
chr2	114213299	.	AT	A	30.94	PASS	AC=1;AF=0.5;AN=2;DP=772;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant6-variant7-variant9-variant11-variant13-variant14-variant15-filterInvariant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant34-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:132,0,260:1,13,2,6
chr2	114257319	.	C	G	2068.95	PASS	AC=1;AF=0.536;AN=2;DP=2194;set=variant3-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant23-variant26-variant32-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,78:182:99:1943,0,2585:40,64,32,46
chr2	114335302	.	C	A	154.66	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:26,12:38:99:183,0,529:13,13,6,6
chr2	114335380	.	A	G	43.71	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=342;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:195,0,448:9,13,6,6
chr2	114340433	.	A	G	119.88	PASS	AC=1;AF=0.5;AN=2;DP=684;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:203,0,381:10,3,6,4
chr2	114340494	.	G	A	64.66	PASS	AC=1;AF=0.5;AN=2;DP=1755;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,21:58:99:387,0,896:20,17,12,9
chr2	114340628	.	C	T	131.75	PASS	AC=1;AF=0.5;AN=2;DP=1378;FractionInformativeReads=1;set=variant4-variant6-variant7-variant8-variant9-filterInvariant10-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant22-variant23-variant25-variant27-variant28-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant36-variant38-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,14:72:99:164,0,1352:25,33,6,8
chr2	114340663	.	G	A	262.84	PASS	AC=1;AF=0.5;AN=2;DP=1814;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:1221,0,627:6,10,13,19
chr2	114340677	.	C	A	237.1	PASS	AC=1;AF=0.5;AN=2;DP=1576;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:1081,0,594:5,9,10,17
chr2	114340706	.	A	G	310.29	PASS	AC=1;AF=0.5;AN=2;DP=926;set=variant3-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:263,0,317:4,8,0,10
chr2	114346484	.	C	T	80.75	DRAGENHardSNP	AC=1;AF=0.654;AN=2;DP=583;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:343,0,189:9,1,12,4
chr2	114346531	.	A	G	358.79	DRAGENHardSNP	AC=1;AF=0.602;AN=2;DP=1769;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:642,0,597:19,10,21,11
chr2	114346567	.	G	A	382.72	DRAGENHardSNP	AC=1;AF=0.535;AN=2;DP=2778;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:65,23:88:99:305,0,1374:39,26,15,8
chr2	114346582	.	A	G	822.49	DRAGENHardSNP	AC=1;AF=0.602;AN=2;DP=3232;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:53,44:97:99:805,0,1026:31,22,27,17
chr2	114346668	.	ACC	A	1177.76	PASS	AC=1;AF=0.602;AN=2;DP=2213;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:935,0,1268:14,18,11,14
chr2	114346710	.	G	C	797.73	DRAGENHardSNP	AC=1;AF=0.607;AN=2;DP=1168;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:483,0,709:5,15,3,10
chr2	114346716	.	G	C	795.74	DRAGENHardSNP	AC=1;AF=0.619;AN=2;DP=1062;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:495,0,622:2,14,3,10
chr2	114351864	.	G	A	698.33	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0;FractionInformativeReads=1;set=variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:727,0,502:13,11,18,15
chr2	114353106	.	G	A	301.94	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=0;set=variant15-variant29	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:330,0,569:16,6,11,4
chr2	114353282	.	G	T	32.12	PASS	AC=1;AF=0.5;AN=2;DP=8030;set=filterInvariant-filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant22-filterInvariant24-variant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:244,30:274:99:117,0,11382:124,120,15,15
chr2	114353290	.	T	C	758.41	PASS	AC=1;AF=0.5;AN=2;DP=1168;FractionInformativeReads=1;set=variant7-filterInvariant13-filterInvariant15-filterInvariant28-filterInvariant39	GT:AD:DP:GQ:PL:SB	0/1:253,24:277:99:209,0,6078:128,125,12,12
chr2	114354996	.	G	A	81.2	PASS	AC=1;AF=0.5;AN=2;DP=49;FractionInformativeReads=1;set=filterInvariant9-filterInvariant13-variant15-filterInvariant26-filterInvariant35-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:130,0,127:5,1,5,1
chr2	114355167	.	A	G	96.17	PASS	AC=1;AF=0.5;AN=2;DP=846;FractionInformativeReads=1;set=filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant12-filterInvariant13-variant15-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant26-filterInvariant27-variant28-filterInvariant30-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:257,0,559:12,10,8,7
chr2	114355237	.	C	T	70.67	PASS	AC=1;AF=0.556;AN=2;DP=116;FS=0;FractionInformativeReads=1;set=filterInvariant2-filterInvariant12-filterInvariant13-variant15-variant20-variant31-filterInvariant34-variant38-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:21,7:28:99:101,0,566:12,9,4,3
chr2	114355998	.	C	G	130.79	PASS	AC=1;AF=0.5;AN=2;DP=2885;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant14-filterInvariant15-filterInvariant18-variant19-filterInvariant20-variant21-variant23-filterInvariant24-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-variant38-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:77,17:94:99:169,0,1867:38,39,9,8
chr2	114369746	.	CT	C	227.11	PASS	AC=1;AF=0.542;AN=2;DP=738;set=variant3-variant4-variant6-variant8-variant11-variant14-variant15-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:28,6:34:99:140,0,1033:8,20,3,3
chr2	114369935	.	T	G	193.67	PASS	AC=1;AF=0.8;AN=2;DP=136;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-filterInvariant13-variant15-variant17-variant19-filterInvariant23-variant26-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:34:78,0,34:1,1,0,3
chr2	114386172	.	A	G	148.75	PASS	AC=1;AF=0.643;AN=2;DP=88;FractionInformativeReads=1;set=variant8-variant15-variant22-variant23-variant25-variant26-filterInvariant28-filterInvariant30-variant31-variant32-variant34-variant35-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:114,0,228:4,2,5,0
chr2	114387907	.	C	T	1981.3	PASS	AC=1;AF=0.543;AN=2;DP=4679;set=variant4-variant6-variant8-variant11-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:123,144:267:99:3729,0,3033:40,83,51,93
chr2	114387950	.	G	A	1037.43	PASS	AC=1;AF=0.543;AN=2;DP=2432;set=variant4-variant6-variant8-variant11-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:63,73:136:99:2097,0,1885:13,50,16,57
chr2	114392716	.	C	T	1182.88	PASS	AC=1;AF=0.543;AN=2;DP=2311;set=variant4-variant6-variant8-variant11-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40	GT:AD:DP:GQ:PL:SB	0/1:62,60:122:99:1435,0,1402:20,42,17,43
chr2	114429542	.	G	A	1921.45	PASS	AC=1;AF=0.5;AN=2;DP=1721;set=variant3-variant11-variant15-variant20-variant23-variant27-variant29-variant31-variant32-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,76:166:99:1633,0,2169:45,45,35,41
chr2	114429576	.	T	C	2010.2	PASS	AC=1;AF=0.5;AN=2;DP=1657;set=variant3-variant11-variant15-variant20-variant23-variant27-variant29-variant31-variant32-variant38-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,75:163:99:1866,0,2076:43,45,30,45
chr2	114470778	.	G	A	5384.82	PASS	AC=2;AF=0.817;AN=2;DP=8326;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,257:257:99:7728,769,0:0,0,118,139
chr2	114471473	.	A	G	2490.43	PASS	AC=1;AF=0.5;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant15-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:109,101:210:99:2519,0,2791:67,42,61,40
chr2	114471519	.	T	C	2919.01	PASS	AC=1;AF=0.5;AN=2;DP=1738;MQ=60;set=variant11-variant15-variant21-variant32-variant33-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:151,139:290:99:3272,0,3616:89,62,82,57
chr2	114471921	.	A	G	1042.8	PASS	AC=1;AF=0.583;AN=2;DP=1276;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,48:90:99:1377,0,980:23,19,21,27
chr2	114471932	.	G	C	1630.12	PASS	AC=1;AF=0.697;AN=2;DP=2323;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,46:94:99:1090,0,1344:22,26,25,21
chr2	114472260	.	G	T	2176.72	PASS	AC=1;AF=0.5;AN=2;DP=2045;MQ=60;set=variant11-variant15-variant21-variant31-variant32-variant33-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:145,125:270:99:3151,0,3735:69,76,59,66
chr2	114476582	.	C	A	568.49	PASS	AC=1;AF=0.703;AN=2;DP=663;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:351,0,306:8,1,8,3
chr2	114480548	.	A	G	201.91	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant24-variant28-variant29-variant33-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:225,0,317:8,1,6,0
chr2	114480812	.	A	AAAC	446.07	PASS	AC=2;AF=0.825;AN=2;DP=880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1330,93,0:0,0,11,20
chr2	114486907	.	T	C	151.77	PASS	AC=1;AF=0.724;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:127,0,261:7,1,2,2
chr2	114492135	.	C	T	1855.07	PASS	AC=1;AF=0.697;AN=2;DP=2174;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:640,0,888:18,19,14,15
chr2	114493260	.	A	G	113.25	PASS	AC=1;AF=0.708;AN=2;DP=69;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant12-variant15-variant17-variant24-variant28-variant29-variant32-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:36:81,0,36:1,0,2,0
chr2	114493315	.	C	A	338.21	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant21-variant31-variant32-variant33-variant37-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:221,0,300:7,2,5,3
chr2	114493509	.	CT	C	1026.11	PASS	AC=1;AF=0.583;AN=2;DP=1333;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:970,0,1347:22,29,14,25
chr2	114493524	.	C	T	1427.42	PASS	AC=1;AF=0.697;AN=2;DP=1985;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1112,0,941:13,24,17,28
chr2	114499605	.	A	C	13338.8	PASS	AC=1;AF=0.697;AN=2;DP=13575;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:269,247:516:99:5486,0,6599:138,131,123,124
chr2	114500131	.	C	A	10078.3	PASS	AC=1;AF=0.697;AN=2;DP=9217;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:188,165:353:99:4237,0,5034:74,114,74,91
chr2	114501112	.	C	T	276.84	PASS	AC=1;AF=0.588;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:416,0,468:11,7,11,5
chr2	114503630	.	T	G	232.42	PASS	AC=1;AF=0.588;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:198,0,105:3,0,5,0
chr2	114508022	.	G	A	1502.11	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.757;QD=12.95;ReadPosRankSum=0.108;SOR=0.666;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:54,62:116:99:1530,0,1116:30,24,34,28
chr2	114513386	.	C	T	2064.95	PASS	AC=1;AF=0.697;AN=2;DP=2493;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,27:77:99:714,0,1157:28,22,20,7
chr2	114513787	.	C	G	4230.46	PASS	AC=2;AF=0.919;AN=2;DP=7300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:6470,656,0:0,0,123,96
chr2	114513901	.	C	T	2710.65	PASS	AC=1;AF=0.583;AN=2;DP=3900;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,107:247:99:2723,0,3501:63,77,48,59
chr2	114514098	.	A	C	2778.48	PASS	AC=1;AF=0.697;AN=2;DP=3999;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,77:149:99:1710,0,1670:34,38,37,40
chr2	114514338	.	T	G	1882.93	PASS	AC=1;AF=0.697;AN=2;DP=3645;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:1661,0,1616:37,40,38,39
chr2	114514391	.	T	G	1683.92	PASS	AC=2;AF=0.817;AN=2;DP=4067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3818,381,0:0,0,57,70
chr2	114647485	.	G	T	246.37	PASS	AC=1;AF=0.5;AN=2;DP=34;FractionInformativeReads=1;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:275,0,229:6,2,7,3
chr2	114648081	.	C	T	403.3	PASS	AC=1;AF=0.563;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant16-variant25-variant28-variant30-variant35	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:543,0,359:6,6,10,10
chr2	114674680	.	A	G	524.94	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=1.41;FractionInformativeReads=1;MQ=60;MQRankSum=0.874;QD=14.19;ReadPosRankSum=1.793;SOR=0.419;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:553,0,405:4,12,7,14
chr2	114689047	.	C	CT	83.76	PASS	AC=1;AF=0.571;AN=2;DP=177;MQ=60;set=variant10-variant15-variant16-filterInvariant25-variant28-variant30-variant35	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:315,0,238:6,9,6,10
chr2	114691809	.	G	GT	182.88	PASS	AC=1;AF=0.5;AN=2;DP=53;MQ=60;set=variant15-variant16	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:220,0,225:11,0,7,4
chr2	114709476	.	A	T	855.18	PASS	AC=1;AF=0.563;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant16-variant25-variant28-variant30-variant35	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:993,0,774:13,20,14,26
chr2	114714855	.	A	G	1350.96	PASS	AC=1;AF=0.5;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant20-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,49:84:99:1379,0,959:25,10,35,14
chr2	114715533	.	G	A	1215.25	PASS	AC=1;AF=0.738;AN=2;DP=2312;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,39:65:99:974,0,627:11,15,17,22
chr2	114716178	.	GT	G,GTT	109.7	PASS	AC=1,0;AF=0.429,0.143;AN=2;DP=373;MQ=60;set=variant10-variant14-variant15-variant16-variant23-variant25-variant28-variant29-variant30-variant31-variant35-variant38-variant41-variant42	GT:DP:GQ:SB	0/1:30:99:8,3,13,6
chr2	114716365	.	G	A	2187.59	PASS	AC=1;AF=0.545;AN=2;DP=1795;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant16-variant25-variant28-variant29-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:104,81:185:99:1929,0,2529:59,45,39,42
chr2	114719451	.	A	G	12648.4	PASS	AC=1;AF=0.738;AN=2;DP=14420;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:228,242:470:99:6282,0,5520:108,120,129,113
chr2	115919301	.	G	A	666.15	PASS	AC=2;AF=0.667;AN=2;DP=1421;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1304,139,0:0,1,18,32
chr2	115919677	.	C	G	2250.7	PASS	AC=2;AF=1;AN=2;DP=2686;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:4160,289,0:0,0,54,38
chr2	115919678	.	T	C	2250.7	PASS	AC=2;AF=1;AN=2;DP=2711;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:4210,289,0:0,0,55,41
chr2	116066984	.	G	A	1899.03	PASS	AC=2;AF=0.857;AN=2;DP=2023;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1829,154,0:0,0,10,42
chr2	116099725	.	A	T	4300.01	PASS	AC=2;AF=0.93;AN=2;DP=4811;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,145:146:99:4496,403,0:1,0,54,91
chr2	116497479	.	A	G	2797.89	PASS	AC=2;AF=1;AN=2;DP=3446;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,88:89:99:2759,226,0:1,0,27,61
chr2	116497528	.	A	G	1419.36	PASS	AC=2;AF=1;AN=2;DP=1510;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1435,114,0:0,0,7,31
chr2	116510817	.	G	C	1184.04	PASS	AC=2;AF=0.776;AN=2;DP=1995;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2155,213,0:0,0,37,34
chr2	116525960	.	G	A	3394.71	PASS	AC=2;AF=1;AN=2;DP=5503;FS=0;MQ=60;MQRankSum=0.66;ReadPosRankSum=0.561;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4238,414,0:0,0,68,70
chr2	116535086	.	T	C	453.85	PASS	AC=2;AF=1;AN=2;DP=577;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:442,36,0:0,0,2,10
chr2	116548526	.	A	G	509.76	PASS	AC=2;AF=0.919;AN=2;DP=605;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:574,45,0:0,0,12,3
chr2	116548820	.	C	T	2849.35	PASS	AC=2;AF=0.919;AN=2;DP=3525;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:2993,311,0:0,0,43,61
chr2	116593675	.	ATG	A	438.21	PASS	AC=2;AF=0.925;AN=2;DP=457;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:598,48,0:0,0,10,6
chr2	116593695	.	GATAT	G,GAT	416.07	PASS	AC=0,2;AF=0.097,0.565;AN=2;DP=447;set=variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:DP:GQ:SB	2/2:20:25:1,1,12,6
chr2	116598546	.	G	A	461.7	PASS	AC=2;AF=0.977;AN=2;DP=627;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:513,45,0:0,0,5,10
chr2	116599659	.	A	T	1435.05	PASS	AC=2;AF=0.966;AN=2;DP=1738;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1301,128,0:0,0,29,14
chr2	116599927	.	T	C	11398.5	PASS	AC=2;AF=0.989;AN=2;DP=14420;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,422:424:99:12358,1218,0:1,1,229,193
chr2	116601631	.	C	T	7122.02	PASS	AC=2;AF=0.731;AN=2;DP=7621;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6478,641,0:0,0,109,105
chr2	116602353	.	T	A	3823.16	PASS	AC=2;AF=1;AN=2;DP=5850;FS=0;MQ=60;MQRankSum=0.323;ReadPosRankSum=1.243;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5359,471,0:0,0,72,85
chr2	118572471	.	A	C,T	3108.6	PASS	AC=1,0;AF=0.643,0.014;AN=2;DP=9408;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:307:99:55,85,70,97
chr2	118578691	.	TA	T	284.1	PASS	AC=1;AF=0.898;AN=2;DP=1810;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:618,0,644:15,13,14,12
chr2	118582936	.	A	ATAAAG	2531.88	PASS	AC=1;AF=0.898;AN=2;DP=5707;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:97,73:170:99:2844,0,6472:47,50,39,34
chr2	118583940	.	C	T	669.38	PASS	AC=1;AF=0.662;AN=2;DP=2232;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,40:89:99:978,0,1103:27,22,24,16
chr2	118588640	.	C	T	1931.52	PASS	AC=1;AF=0.898;AN=2;DP=5976;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:69,95:164:99:2509,0,1873:21,48,34,61
chr2	118688754	.	T	C	2379.45	PASS	AC=2;AF=0.989;AN=2;DP=2728;MQ=60;MQRankSum=0.12;ReadPosRankSum=2.065;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2211,204,0:0,0,21,47
chr2	118704478	.	T	G	2182.25	PASS	AC=2;AF=1;AN=2;DP=2211;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2591,213,0:0,0,15,56
chr2	118704503	.	A	G	1391.48	PASS	AC=2;AF=0.763;AN=2;DP=1360;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1951,153,0:0,0,8,43
chr2	118705570	.	A	G	2569.3	PASS	AC=2;AF=0.989;AN=2;DP=3110;MQRankSum=0.542;ReadPosRankSum=1.075;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2272,227,0:0,0,48,28
chr2	118706879	.	A	G	2778.79	PASS	AC=2;AF=0.989;AN=2;DP=3528;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2817,281,0:0,0,49,45
chr2	118731573	.	G	A	2247.44	PASS	AC=2;AF=0.706;AN=2;DP=3780;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4735,479,0:0,0,76,84
chr2	118732975	.	T	C	1455.63	PASS	AC=2;AF=0.989;AN=2;DP=3368;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2776,255,0:0,0,32,53
chr2	118735395	.	G	A	944.04	PASS	AC=2;AF=0.989;AN=2;DP=1147;FS=0;MQ=60;MQRankSum=0.228;ReadPosRankSum=-0.152;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1086,90,0:0,0,25,5
chr2	118753097	.	C	T	464.73	PASS	AC=1;AF=0.676;AN=2;DP=1293;MQ=60;set=variant-variant2-variant4-variant11-variant15-variant22-variant23-variant24-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1115,0,1086:20,26,19,32
chr2	118753148	.	A	ATC	1078.68	PASS	AC=2;AF=0.989;AN=2;DP=1836;MQ=60;MQRankSum=0.716;ReadPosRankSum=-1.273;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2205,147,0:0,0,16,33
chr2	118764242	.	C	CA	3387.83	PASS	AC=2;AF=0.682;AN=2;DP=2603;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3781,310,0:0,0,54,48
chr2	118766024	.	A	G	1620.32	PASS	AC=2;AF=0.989;AN=2;DP=2035;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1950,171,0:0,0,43,14
chr2	118771658	.	G	A	2267.06	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=1.832;FractionInformativeReads=0.995;MQ=60;MQRankSum=1.599;QD=12.46;ReadPosRankSum=0.808;SOR=0.845;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:88,93:181:99:2295,0,2016:41,47,40,53
chr2	118771663	.	A	G	4128.67	PASS	AC=2;AF=0.989;AN=2;DP=6324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:6696,538,0:0,0,80,97
chr2	118850469	.	G	A	548.9	PASS	AC=1;AF=0.5;AN=2;DP=1284;set=variant-variant10-variant13-variant15-variant18-variant27-variant31-variant32-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,67:124:99:1708,0,1441:32,25,37,30
chr2	118850594	.	G	T	796.24	PASS	AC=1;AF=0.5;AN=2;DP=1838;set=variant-variant4-variant7-variant8-variant10-variant13-variant15-variant18-variant22-filterInvariant25-variant27-variant31-variant32-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,88:142:99:2345,0,1205:24,30,43,45
chr2	118850682	.	G	A	493.05	PASS	AC=1;AF=0.5;AN=2;DP=1059;set=variant-variant10-variant13-variant15-variant18-variant27-variant31-variant32-variant34-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,64:120:99:1550,0,1237:27,29,28,36
chr2	118850928	.	C	T	460.21	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;set=variant15-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:488,0,572:4,15,6,7
chr2	118850939	.	AGATGAT	AGAT,A	186.04	PASS	AC=1,0;AF=0.367,0.567;AN=2;DP=670;set=variant5-variant6-variant8-variant10-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant31-variant38-variant40	GT:DP:GQ:SB	0/1:20:99:6,7,0,7
chr2	118850968	.	A	AGGAGGAGG	475.5	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;set=variant15-variant32-variant40	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:513,0,403:2,8,6,7
chr2	118851381	.	TGAA	T	2736.95	PASS	AC=1;AF=0.5;AN=2;DP=5389;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,61:151:99:1324,0,3530:42,48,28,33
chr2	118851439	.	T	G	696.55	PASS	AC=1;AF=0.5;AN=2;DP=1022;set=variant-variant10-variant13-variant15-variant18-variant27-variant31-variant32-variant34-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,48:96:99:1199,0,1843:20,28,21,27
chr2	118851442	.	G	T	2984.28	PASS	AC=1;AF=0.667;AN=2;DP=1914;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant24-variant25-variant27-variant29-variant32-variant34-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:57,43:100:99:1466,0,2265:26,31,17,26
chr2	118851517	.	TGAGGAGGAGGAG	TGAGGAGGAG,TGAGGAGGAGGAGGAG,T,TGAG	2308.49	PASS	AC=0,0,1,0;AF=0.1,0.3,0.1,0.1;AN=2;DP=282;set=variant5-variant12-variant15-variant17-variant34	GT:DP:GQ:SB	0/3:10:19:0,2,3,5
chr2	118851586	.	AGAT	A,AGATGATGATGAT	1354.18	PASS	AC=1,1;AF=0.833,0.167;AN=2;DP=80;FS=0;set=variant5-variant15-variant27	GT:DP:GQ:SB	1/2:10:99:0,0,5,5
chr2	118851677	.	TGATGAGGAGGAG	T	913.85	PASS	AC=1;AF=0.5;AN=2;DP=121;set=variant15-variant27	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:951,0,1221:20,14,18,7
chr2	118851680	.	T	G	1452.26	PASS	AC=1;AF=0.75;AN=2;DP=199;set=variant5-variant15-variant27-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:619,0,1016:19,8,17,9
chr2	118851809	.	AGAT	AGATGAT,AGATGATGAT,AGATGATGATGAT,AGATGATGATGATGAT,A	1256.93	PASS	AC=2,0,0,0,0;AF=0.663,0.188,0.025,0.013,0.013;AN=2;DP=3731;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:61:99:0,0,24,37
chr2	118854094	.	AT	ATT,A	999.98	PASS	AC=1,0;AF=0.375,0.156;AN=2;DP=1558;set=variant-variant8-variant10-variant13-variant15-variant18-variant19-variant21-variant27-variant31-variant32-variant34-variant37-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:115:99:26,25,35,29
chr2	118866033	.	G	GA	778.04	PASS	AC=1;AF=0.69;AN=2;DP=1668;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:1160,0,949:12,19,11,26
chr2	118866963	.	C	T	7396.24	PASS	AC=2;AF=1;AN=2;DP=8655;FS=0;MQRankSum=0.871;ReadPosRankSum=0.38;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,257:257:99:7793,771,0:0,0,142,115
chr2	119591683	.	C	A	402.17	PASS	AC=1;AF=0.558;AN=2;DP=1264;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant21-variant24-variant26-variant27-variant28-variant29-variant32-variant36-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:541,0,597:7,15,5,15
chr2	119599735	.	A	G	444.15	PASS	AC=1;AF=0.708;AN=2;DP=813;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:396,0,184:5,5,10,6
chr2	119600067	.	C	CT	639.55	PASS	AC=2;AF=0.869;AN=2;DP=566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:556,45,0:0,0,7,8
chr2	119605301	.	T	TG	875.93	PASS	AC=1;AF=0.538;AN=2;DP=475;set=variant8-variant11-variant12-variant15-variant18-filterInvariant21-variant22-variant25-variant28-variant34-variant35-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:49:390,0,49:0,5,1,12
chr2	119605315	.	T	G	381.27	PASS	AC=1;AF=0.5;AN=2;DP=182;set=variant8-variant11-variant15-variant18-variant23-variant28-variant34-variant35-variant38-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:319,0,230:2,10,0,12
chr2	119700096	.	T	C	1538.16	PASS	AC=1;AF=0.707;AN=2;DP=1862;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:1003,0,890:7,24,5,26
chr2	119740290	.	C	T	82.69	PASS	AC=2;AF=0.729;AN=2;DP=399;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:186,18,0:0,0,2,4
chr2	119748135	.	TC	T,TCC	2507.87	PASS	AC=1,0;AF=0.526,0.026;AN=2;DP=2518;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant21-variant33-variant34-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:125:99:32,42,29,22
chr2	119748143	.	C	G	2526.3	PASS	AC=1;AF=0.5;AN=2;DP=1073;MQ=60;set=variant4-variant6-variant9-variant15-variant17-variant21-variant33-variant40-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,55:130:99:2029,0,3541:32,43,32,23
chr2	119749477	.	T	G	2231.23	PASS	AC=2;AF=0.872;AN=2;DP=7013;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4940,485,0:0,0,69,93
chr2	119749858	.	A	G	125.14	PASS	AC=1;AF=0.688;AN=2;DP=390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:192,0,251:6,1,5,2
chr2	119751769	.	AAAC	A,AAACAAC	340.72	PASS	AC=1,1;AF=0.671,0.073;AN=2;DP=949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:23:99:0,0,21,2
chr2	119751867	.	C	T	1097.34	PASS	AC=1;AF=0.5;AN=2;DP=930;MQ=60;set=variant2-variant4-variant15-variant17-variant21-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,92:159:99:2274,0,1708:44,23,54,38
chr2	119914101	.	T	G	1210.36	PASS	AC=1;AF=0.769;AN=2;DP=2408;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:855,0,1302:21,28,18,18
chr2	119915132	.	CG	C	943.22	PASS	AC=2;AF=0.966;AN=2;DP=2073;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1584,147,0:0,0,35,14
chr2	119915249	.	T	C	793.2	PASS	AC=1;AF=0.805;AN=2;DP=6778;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,97:205:99:2267,0,2356:56,52,53,44
chr2	119915509	.	G	T	947.02	PASS	AC=1;AF=0.571;AN=2;DP=687;MQ=60;set=variant-variant4-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:610,0,986:20,10,14,10
chr2	119915988	.	A	G	492.14	PASS	AC=1;AF=0.805;AN=2;DP=1552;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:567,0,601:12,10,12,7
chr2	119916313	.	T	A	2112.52	PASS	AC=1;AF=0.571;AN=2;DP=2010;MQ=60;set=variant-variant4-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant37-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,69:159:99:1506,0,2226:43,47,36,33
chr2	120003642	.	C	T	2091.06	PASS	AC=1;AF=0.909;AN=2;DP=3746;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,35:88:99:985,0,1399:22,31,13,22
chr2	120003780	.	A	G	421.21	PASS	AC=1;AF=0.575;AN=2;DP=928;MQ=60;set=variant-variant2-variant3-variant4-variant14-variant15-variant19-variant20-variant24-variant26-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:540,0,615:9,15,9,13
chr2	120005840	.	TC	T,TCC	655.13	PASS	AC=0,1;AF=0.574,0.088;AN=2;DP=3631;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant44	GT:DP:GQ:SB	0/2:102:99:21,34,19,28
chr2	120012171	.	G	A	913.37	PASS	AC=1;AF=0.55;AN=2;DP=1708;MQ=60;set=variant-variant2-variant3-variant4-variant14-variant15-variant19-variant20-variant24-variant26-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1255,0,1046:23,25,29,22
chr2	120014985	.	A	G	331.77	PASS	AC=2;AF=1;AN=2;DP=998;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1110,84,0:0,0,26,2
chr2	120015376	.	C	T	491.67	PASS	AC=1;AF=0.5;AN=2;DP=338;set=variant5-variant13-variant15-variant18-variant29-variant40	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:887,0,1050:6,27,10,22
chr2	120021785	.	T	C	1047.71	PASS	AC=1;AF=0.943;AN=2;DP=2393;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:584,0,815:16,18,15,13
chr2	120021917	.	C	A	285.62	PASS	AC=1;AF=0.528;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant14-variant15-variant19-variant20-variant24-variant26-variant28-variant31-variant32-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:368,0,374:7,7,5,8
chr2	120022382	.	C	A	301.56	PASS	AC=1;AF=0.528;AN=2;DP=836;MQ=60;set=variant-variant2-variant3-variant4-variant14-variant15-variant19-variant20-variant24-variant26-variant28-variant31-variant32-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:1165,0,1790:13,16,13,17
chr2	120022388	.	CCG	C	295.52	PASS	AC=1;AF=0.528;AN=2;DP=849;MQ=60;set=variant-variant2-variant3-variant4-variant14-variant15-variant19-variant20-variant24-variant26-variant28-variant31-variant32-variant36-variant37-variant38-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:1131,0,1783:13,16,13,16
chr2	120023188	.	A	G	5296.53	PASS	AC=1;AF=0.943;AN=2;DP=7004;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:98,94:192:99:2229,0,2491:47,51,43,51
chr2	120059895	.	G	GGAAA	984.77	PASS	AC=1;AF=0.735;AN=2;DP=2559;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,24:70:99:869,0,2271:28,18,15,9
chr2	120059921	.	C	A	1040.52	PASS	AC=1;AF=0.533;AN=2;DP=1382;MQ=60;set=variant-variant4-variant7-variant10-variant13-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,30:86:99:701,0,1513:36,20,19,11
chr2	120059988	.	T	C	1398.69	PASS	AC=1;AF=0.735;AN=2;DP=4140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,40:123:99:896,0,1987:46,37,25,15
chr2	120060082	.	T	C	926.72	PASS	AC=1;AF=0.735;AN=2;DP=2578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:973,0,1507:19,37,17,25
chr2	120078689	.	T	C	148.12	PASS	AC=1;AF=0.571;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant36-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:311,0,111:4,4,7,4
chr2	120078778	.	T	C	990.43	PASS	AC=1;AF=0.735;AN=2;DP=2618;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,74:130:99:1584,0,1243:34,22,40,34
chr2	120097851	.	A	G	142.88	PASS	AC=1;AF=0.639;AN=2;DP=2066;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,51:80:99:1245,0,603:15,14,20,31
chr2	120125029	.	A	G	4838.05	PASS	AC=2;AF=0.841;AN=2;DP=6894;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:6049,560,0:0,0,113,74
chr2	120125936	.	T	C	1156.15	PASS	AC=2;AF=0.83;AN=2;DP=3117;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2703,266,0:0,0,39,50
chr2	120125973	.	G	C	271.55	PASS	AC=1;AF=0.528;AN=2;DP=883;MQ=60;set=variant-variant3-variant4-variant7-variant9-variant13-variant15-variant17-variant19-variant20-variant23-variant25-variant29-variant31-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,23:67:99:613,0,1076:19,25,6,17
chr2	120187344	.	A	G	77.3	PASS	AC=1;AF=0.705;AN=2;DP=923;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:445,0,431:12,3,11,2
chr2	120189404	.	A	G	538.86	PASS	AC=2;AF=0.864;AN=2;DP=643;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:394,33,0:0,0,6,5
chr2	120189433	.	G	C	787.34	PASS	AC=2;AF=0.864;AN=2;DP=838;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:534,45,0:0,0,9,6
chr2	120194651	.	A	AGTGTGC	5059.99	PASS	AC=2;AF=0.909;AN=2;DP=7932;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:11151,757,0:0,0,117,128
chr2	120195182	.	C	G	1424.6	PASS	AC=2;AF=0.907;AN=2;DP=2282;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2400,230,0:0,0,32,45
chr2	120195496	.	AGGACT	A	946.25	PASS	AC=1;AF=0.688;AN=2;DP=2388;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:852,0,1700:14,21,13,10
chr2	120195699	.	T	TC	2469.1	PASS	AC=2;AF=0.917;AN=2;DP=2740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:3503,235,0:0,0,38,39
chr2	120195700	.	G	C	2750.62	PASS	AC=2;AF=1;AN=2;DP=435;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant11-variant12-variant13-variant-variant15	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:3503,235,0:0,0,39,39
chr2	120197670	.	G	A	1068.44	PASS	AC=1;AF=0.675;AN=2;DP=4102;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,72:147:99:1988,0,1922:45,30,42,30
chr2	120199140	.	A	G	809.26	PASS	AC=2;AF=0.907;AN=2;DP=3535;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2474,252,0:0,0,35,49
chr2	120209689	.	A	G	1841.72	PASS	AC=2;AF=0.907;AN=2;DP=5171;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3864,386,0:0,0,52,77
chr2	120221585	.	G	A	132.17	PASS	AC=1;AF=0.7;AN=2;DP=799;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:253,0,435:10,2,7,2
chr2	120221861	.	G	A	465.73	PASS	AC=1;AF=0.529;AN=2;DP=1604;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant31-variant32-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:66,62:128:99:1461,0,1713:25,41,24,38
chr2	120221984	.	A	C	463.53	PASS	AC=2;AF=0.919;AN=2;DP=886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:851,60,0:0,0,5,15
chr2	120221992	.	T	C	79.69	PASS	AC=1;AF=0.529;AN=2;DP=321;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant31-variant32-variant35-variant36-variant37-variant38-variant39	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:216,0,400:2,11,3,5
chr2	120230998	.	G	A	1992.23	PASS	AC=1;AF=0.905;AN=2;DP=4184;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,61:117:99:1437,0,1488:35,21,36,25
chr2	120231165	.	T	C	5079.83	PASS	AC=1;AF=0.857;AN=2;DP=7499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,91:198:99:2293,0,2432:49,58,43,48
chr2	120231303	.	T	C	1868.17	PASS	AC=1;AF=0.907;AN=2;DP=2534;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:1043,0,720:12,19,14,25
chr2	120303820	.	A	T	319.36	PASS	AC=1;AF=0.625;AN=2;DP=775;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant30-variant31-variant33-variant34-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:292,0,558:7,13,1,9
chr2	120317621	.	CTT	CT,CTTT,CTTTT,C	167.59	PASS	AC=1,1,0,0;AF=0.273,0.136,0.03,0.091;AN=2;DP=3278;set=filterInvariant-variant3-variant4-variant5-variant7-filterInvariant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/2:74:82:8,12,22,32
chr2	120362407	.	C	T	3828.3	PASS	AC=2;AF=0.955;AN=2;DP=6083;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4522,457,0:0,0,75,78
chr2	120362897	.	T	A	1126.92	PASS	AC=2;AF=1;AN=2;DP=1842;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1500,123,0:0,0,7,34
chr2	120366057	.	G	GT,GTT	384.45	PASS	AC=1,0;AF=0.875,0.045;AN=2;DP=1352;set=Intersection	GT:DP:GQ:SB	0/1:38:47:3,3,20,12
chr2	120369300	.	T	C	3021.8	PASS	AC=2;AF=1;AN=2;DP=4595;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:4712,500,0:0,0,83,85
chr2	120383138	.	CATT	C	403.53	PASS	AC=1;AF=0.571;AN=2;DP=732;MQ=60;set=variant7-variant8-variant11-variant13-variant15-variant18-variant21-variant22-variant23-variant30-variant33-variant37-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:1269,0,1879:27,12,24,9
chr2	120385094	.	GATATATATAT	GATAT,GAT,GATATAT,G,GATATATAT	341.69	PASS	AC=2,0,0,0,0;AF=0.75,0.119,0.048,0.036,0.012;AN=2;DP=434;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:11:32:0,0,8,3
chr2	120387637	.	G	C	196.77	PASS	AC=2;AF=1;AN=2;DP=281;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:312,21,0:0,0,0,7
chr2	120388412	.	G	A	6409.69	PASS	AC=2;AF=1;AN=2;DP=9098;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:7508,667,0:0,0,118,105
chr2	120404629	.	AT	A	1418.21	PASS	AC=2;AF=0.989;AN=2;DP=3871;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,95:98:99:2377,216,0:0,3,42,53
chr2	120409430	.	A	G	1281.35	PASS	AC=2;AF=1;AN=2;DP=1187;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1195,96,0:0,0,23,9
chr2	120414083	.	C	T	581.38	PASS	AC=2;AF=0.662;AN=2;DP=2003;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2144,197,0:0,0,24,42
chr2	120436681	.	A	G	909.24	PASS	AC=2;AF=0.966;AN=2;DP=1216;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1056,84,0:0,0,23,5
chr2	120438523	.	A	G	639.4	PASS	AC=2;AF=0.83;AN=2;DP=6262;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,181:181:99:5452,542,0:0,0,101,80
chr2	120438696	.	A	G	3178.22	PASS	AC=2;AF=1;AN=2;DP=8952;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:7340,678,0:0,0,111,115
chr2	120439230	.	C	G	627.88	PASS	AC=2;AF=0.83;AN=2;DP=5506;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3967,369,0:0,0,64,59
chr2	120439459	.	C	A	327.41	PASS	AC=2;AF=0.83;AN=2;DP=2499;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1496,144,0:0,0,22,26
chr2	120439702	.	G	GTTT,GTT,GT	89.9	PASS	AC=0,2,0;AF=0.154,0.481,0.212;AN=2;DP=268;set=variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant37-variant40-variant41-variant42	GT:DP:GQ:SB	2/2:4:12:0,0,1,3
chr2	120443443	.	A	G	950.14	PASS	AC=2;AF=0.795;AN=2;DP=3437;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2907,270,0:0,0,41,49
chr2	120443665	.	T	C	621.83	PASS	AC=2;AF=0.818;AN=2;DP=2310;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1871,173,0:0,0,27,31
chr2	120443845	.	TA	T	162.73	PASS	AC=2;AF=0.826;AN=2;DP=1173;MQ=60;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:886,87,0:0,0,13,16
chr2	120517593	.	C	T	3242.44	PASS	AC=2;AF=0.786;AN=2;DP=7015;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5330,544,0:0,0,81,103
chr2	120689905	.	A	G	417.99	PASS	AC=2;AF=0.762;AN=2;DP=710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:993,81,0:0,0,24,3
chr2	120703842	.	A	G	357.65	PASS	AC=2;AF=0.813;AN=2;DP=398;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:433,30,0:0,0,10,0
chr2	120704164	.	A	AT	7975.92	PASS	AC=2;AF=0.762;AN=2;DP=7533;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,242:242:99:10745,737,0:0,0,106,136
chr2	120704166	.	G	T	7984.96	PASS	AC=2;AF=0.762;AN=2;DP=7379;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:10745,737,0:0,0,105,135
chr2	120714401	.	CT	C,CTT	229.24	PASS	AC=1,0;AF=0.488,0.013;AN=2;DP=2813;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:87:99:37,32,8,10
chr2	120718322	.	A	G	644.69	PASS	AC=2;AF=0.762;AN=2;DP=890;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:804,69,0:0,0,18,5
chr2	120718672	.	T	G	737.45	PASS	AC=2;AF=0.966;AN=2;DP=501;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:493,39,0:0,0,2,11
chr2	120725704	.	A	G	406.13	PASS	AC=2;AF=0.989;AN=2;DP=433;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.406;ReadPosRankSum=0.406;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:364,27,0:0,0,1,8
chr2	120735739	.	A	C	3228.24	PASS	AC=1;AF=0.5;AN=2;DP=283;FS=0.909;FractionInformativeReads=1;MQ=60;MQRankSum=0.151;QD=11.41;ReadPosRankSum=-0.425;SOR=0.631;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:153,130:283:99:3256,0,3823:67,86,59,71
chr2	120736007	.	GT	G	994.36	PASS	AC=2;AF=0.966;AN=2;DP=1701;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1158,111,0:0,0,15,22
chr2	120738504	.	G	A	4090.52	PASS	AC=2;AF=0.977;AN=2;DP=4816;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4463,390,0:0,0,50,80
chr2	120739236	.	T	C	9108.99	PASS	AC=2;AF=0.793;AN=2;DP=9352;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,307:307:99:9325,918,0:0,0,180,127
chr2	120740051	.	C	CTA	5160.65	PASS	AC=2;AF=1;AN=2;DP=5392;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:7134,481,0:0,0,86,70
chr2	120741083	.	T	C	12659.3	PASS	AC=2;AF=0.793;AN=2;DP=13575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,392:392:99:11535,1174,0:0,0,182,210
chr2	120770633	.	T	C	2008.38	PASS	AC=2;AF=1;AN=2;DP=2798;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2183,219,0:0,0,41,32
chr2	120770708	.	A	C	2202.53	PASS	AC=2;AF=0.821;AN=2;DP=3227;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2133,230,0:0,0,34,43
chr2	120776972	.	TG	T	1195.13	PASS	AC=2;AF=0.833;AN=2;DP=980;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1032,75,0:0,0,2,23
chr2	120830815	.	A	G	1029.62	PASS	AC=2;AF=0.833;AN=2;DP=1519;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1644,159,0:0,0,21,32
chr2	120862453	.	G	T	2800.04	PASS	AC=2;AF=0.798;AN=2;DP=3483;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2877,263,0:0,0,63,25
chr2	120885310	.	G	A	4044.94	PASS	AC=2;AF=0.798;AN=2;DP=5069;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4442,470,0:0,0,88,69
chr2	120889173	.	G	C	2117.49	PASS	AC=2;AF=0.798;AN=2;DP=4560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:8,145:153:99:3478,227,0:4,4,88,57
chr2	120918585	.	A	C	1792.76	PASS	AC=2;AF=0.798;AN=2;DP=2449;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1852,194,0:0,0,26,39
chr2	120932177	.	T	G	238.53	PASS	AC=1;AF=0.567;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant11-variant15-variant16-variant20-variant26-variant30-variant31-variant33-variant36-variant38-variant39-variant40	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:285,0,190:6,1,8,1
chr2	120936771	.	A	T	3576.92	PASS	AC=1;AF=0.6;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant15-variant19-variant39	GT:AD:DP:GQ:PL:SB	0/1:55,47:102:99:1427,0,1455:16,39,8,39
chr2	120979322	.	T	C	1944.98	PASS	AC=2;AF=0.814;AN=2;DP=3338;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2536,237,0:0,0,42,37
chr2	120980428	.	G	C	5435.95	PASS	AC=2;AF=0.744;AN=2;DP=8224;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,230:230:99:7129,688,0:0,0,107,123
chr2	120997869	.	A	T	175.94	PASS	AC=1;AF=0.556;AN=2;DP=1178;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,24:28:4:545,0,4:1,3,8,16
chr2	121010443	.	A	T	2301.4	PASS	AC=2;AF=0.89;AN=2;DP=3034;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2024,206,0:0,0,32,37
chr2	121036385	.	T	G	728.03	PASS	AC=2;AF=0.878;AN=2;DP=1708;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2752,187,0:0,0,22,40
chr2	121036386	.	T	A	728.03	PASS	AC=2;AF=0.878;AN=2;DP=1673;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2752,187,0:0,0,21,38
chr2	121038290	.	GA	G	692.39	PASS	AC=2;AF=0.85;AN=2;DP=1017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,34:36:55:839,55,0:1,1,23,11
chr2	121043403	.	G	A	932.48	PASS	AC=2;AF=0.89;AN=2;DP=931;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1150,93,0:0,0,25,6
chr2	121050989	.	T	A	4768.32	PASS	AC=2;AF=0.89;AN=2;DP=5195;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5734,506,0:0,0,101,68
chr2	121052268	.	A	T	915.9	PASS	AC=2;AF=0.9;AN=2;DP=830;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:852,66,0:0,0,2,20
chr2	121108974	.	CAA	CA,C,CAAA	110.07	PASS	AC=1,0,0;AF=0.458,0.028,0.028;AN=2;DP=1706;set=variant-variant2-variant3-variant4-variant5-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-filterInvariant34-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:45:99:16,16,5,8
chr2	121684663	.	C	G	1370.12	PASS	AC=2;AF=0.953;AN=2;DP=1743;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1629,165,0:0,0,29,26
chr2	121708663	.	A	G	1570.95	PASS	AC=2;AF=0.898;AN=2;DP=1847;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2029,156,0:0,0,45,7
chr2	121712728	.	CCTTT	CT,CTT,C	414.84	PASS	AC=0,0,1;AF=0.111,0.389,0.111;AN=2;DP=236;set=variant3-variant7-variant15-variant16-variant17-variant25-variant29-variant31-variant32	GT:DP:GQ:SB	0/3:28:53:4,4,16,4
chr2	121713022	.	C	G	2520.55	PASS	AC=2;AF=1;AN=2;DP=2861;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2758,204,0:0,0,19,49
chr2	121713030	.	G	A	2385.95	PASS	AC=2;AF=0.898;AN=2;DP=2385;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2421,168,0:0,0,11,41
chr2	121713041	.	T	C	1605.81	PASS	AC=2;AF=0.898;AN=2;DP=1878;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1540,120,0:0,0,5,35
chr2	121726447	.	G	A	6330.34	PASS	AC=2;AF=0.932;AN=2;DP=14278;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,419:419:99:12299,1250,0:0,0,185,234
chr2	121729323	.	A	G	966.63	PASS	AC=2;AF=0.886;AN=2;DP=1222;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1205,99,0:0,0,23,10
chr2	121729360	.	T	C	1356.63	PASS	AC=2;AF=0.943;AN=2;DP=2305;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1781,159,0:0,0,35,18
chr2	121729490	.	C	T	4378.78	PASS	AC=2;AF=0.943;AN=2;DP=8641;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6236,651,0:0,0,110,108
chr2	121729686	.	T	C	1174.85	PASS	AC=2;AF=0.943;AN=2;DP=1770;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1589,135,0:0,0,10,35
chr2	121730138	.	C	G	2176.28	PASS	AC=2;AF=0.943;AN=2;DP=2805;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2077,192,0:0,0,43,21
chr2	121740190	.	C	T	976.17	PASS	AC=2;AF=1;AN=2;DP=1258;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1752,120,0:0,0,32,5
chr2	121740194	.	T	G	976.17	PASS	AC=2;AF=1;AN=2;DP=1353;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1752,120,0:0,0,34,6
chr2	121740505	.	C	T	507.89	PASS	AC=2;AF=0.898;AN=2;DP=3243;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2783,275,0:0,0,34,58
chr2	121744225	.	A	G	395.28	PASS	AC=1;AF=0.789;AN=2;DP=2295;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:724,0,985:19,20,16,15
chr2	121746956	.	G	T	1305.04	PASS	AC=1;AF=0.782;AN=2;DP=7926;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,110:220:99:2761,0,2890:47,63,47,63
chr2	121747406	.	G	A	1715.75	PASS	AC=1;AF=0.808;AN=2;DP=6464;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,100:206:99:2584,0,2795:50,56,46,54
chr2	121747429	.	A	G	1659.54	PASS	AC=1;AF=0.782;AN=2;DP=5869;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,92:199:99:2177,0,2624:50,57,47,45
chr2	121749067	.	G	C	854.1	PASS	AC=1;AF=0.782;AN=2;DP=2685;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,44:78:99:1120,0,1048:15,19,22,22
chr2	121749583	.	TACACACACACACACACACAC	T,TACACACACACACACACACACACAC,TACACACACACACACACAC,TACACACACACACACACACACACACAC,TACACACACACACACACACACAC,TACACACACACACAC,TACACACACACACACACACACACACACAC,TACACACACAC	283.97	PASS	AC=0,1,0,0,0,0,0,0;AF=0.013,0.256,0.051,0.256,0.103,0.013,0.026,0.013;AN=2;DP=1053;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:11:56:1,1,4,5
chr2	121976519	.	G	A	607.38	PASS	AC=1;AF=0.645;AN=2;DP=3125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,67:120:99:1591,0,1419:29,24,34,33
chr2	121976642	.	G	A	1158.49	PASS	AC=1;AF=0.667;AN=2;DP=4402;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,74:136:99:1820,0,1523:25,37,35,39
chr2	121976715	.	T	C	1443.46	PASS	AC=2;AF=0.977;AN=2;DP=4185;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3363,320,0:0,0,46,61
chr2	121977438	.	G	A	67.66	PASS	AC=1;AF=0.5;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:142,0,198:4,2,3,1
chr2	121978465	.	G	A	1237.42	PASS	AC=1;AF=0.5;AN=2;DP=752;MQ=60;set=variant12-variant15-variant19-variant22-variant25	GT:AD:DP:GQ:PL:SB	0/1:97,84:181:99:1940,0,2506:52,45,42,42
chr2	121978976	.	TA	T	92.83	PASS	AC=2;AF=0.875;AN=2;DP=1009;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,17:19:5:377,5,0:1,1,8,9
chr2	121979217	.	G	C	3673.47	PASS	AC=2;AF=0.866;AN=2;DP=8068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,218:219:99:9682,647,0:1,0,120,98
chr2	121979220	.	T	TACA	3703.38	PASS	AC=2;AF=0.866;AN=2;DP=8065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,214:215:99:9756,652,0:1,0,118,96
chr2	121979534	.	TA	T	1414.89	PASS	AC=2;AF=0.854;AN=2;DP=5166;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3548,378,0:0,0,57,69
chr2	121980405	.	TC	T	438.54	PASS	AC=2;AF=0.854;AN=2;DP=2264;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2056,166,0:0,0,32,23
chr2	121980465	.	C	T	537.89	PASS	AC=2;AF=0.854;AN=2;DP=2283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2002,189,0:0,0,33,30
chr2	121980857	.	ATAGT	A	316.68	PASS	AC=1;AF=0.691;AN=2;DP=1333;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:1008,0,1632:13,15,15,11
chr2	121981210	.	G	A	514.63	PASS	AC=1;AF=0.521;AN=2;DP=857;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:674,0,664:12,12,13,12
chr2	121981608	.	A	G	858.16	PASS	AC=1;AF=0.521;AN=2;DP=2040;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,43:74:99:1096,0,781:13,18,23,20
chr2	121981950	.	A	G	1084.24	PASS	AC=1;AF=0.521;AN=2;DP=2380;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,57:115:99:1519,0,1455:29,29,30,27
chr2	121982011	.	T	A	691.27	PASS	AC=1;AF=0.697;AN=2;DP=3181;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1353,0,1560:32,28,28,30
chr2	121989489	.	G	A	629.34	PASS	AC=1;AF=0.697;AN=2;DP=4114;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,63:144:99:1360,0,1994:48,33,38,25
chr2	121989683	.	T	TTTTTG,TTTTTGTTTTG	50.48	PASS	AC=2,0;AF=0.857,0.143;AN=2;DP=160;FS=0;MQ=60;set=variant4-variant5-variant7-variant15-filterInvariant17-variant37-variant38	GT:DP:GQ:SB	1/1:3:6:0,0,0,3
chr2	122007378	.	A	C	527.38	PASS	AC=2;AF=0.708;AN=2;DP=1219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1261,114,0:0,0,11,27
chr2	122038940	.	G	A	1105.28	PASS	AC=1;AF=0.5;AN=2;DP=356;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant18-variant38-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,37:87:99:904,0,1456:12,38,11,26
chr2	122042750	.	A	T	5085.39	PASS	AC=1;AF=0.647;AN=2;DP=6337;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:118,100:218:99:2281,0,2893:44,74,40,60
chr2	122042772	.	C	A	2476.46	PASS	AC=1;AF=0.5;AN=2;DP=172;FS=1.288;FractionInformativeReads=1;MQ=60;MQRankSum=0.523;QD=14.4;ReadPosRankSum=1.162;SOR=0.855;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:80,92:172:99:2505,0,2028:27,53,28,64
chr2	122095400	.	T	TTTG	5227.45	PASS	AC=1;AF=0.529;AN=2;DP=4334;set=variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant32-variant33-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:167,141:308:99:5198,0,7254:78,89,63,78
chr2	122095519	.	GCC	GC,G	1667.15	PASS	AC=1,1;AF=0.795,0.159;AN=2;DP=3348;MQ=60;set=Intersection	GT:DP:GQ:SB	2/1:70:99:0,0,23,47
chr2	122095640	.	C	T	181.94	PASS	AC=1;AF=0.5;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant18-variant23-variant25-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:552,0,455:7,10,5,13
chr2	122096449	.	C	T	2359.29	PASS	AC=1;AF=0.5;AN=2;DP=203;FS=2.403;FractionInformativeReads=1;MQ=60;MQRankSum=-1.055;QD=11.62;ReadPosRankSum=2.245;SOR=0.535;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:102,101:203:99:2388,0,2682:56,46,51,50
chr2	122122969	.	G	A	403.31	PASS	AC=1;AF=0.5;AN=2;DP=151;MQ=60;set=variant11-variant12-variant13-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:222,0,339:2,9,3,5
chr2	122125104	.	C	T	1591.58	PASS	AC=1;AF=0.5;AN=2;DP=628;MQ=60;set=variant11-variant12-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,55:92:99:1576,0,1190:33,4,43,12
chr2	122145157	.	G	A	178.64	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:603,0,233:7,1,16,0
chr2	122161850	.	C	T	621.39	PASS	AC=1;AF=0.5;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant13-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,38:83:99:1079,0,1339:34,11,28,10
chr2	122187367	.	C	T	527.2	PASS	AC=1;AF=0.538;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant6-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant25-variant32-variant33-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:562,0,459:12,4,16,3
chr2	122205778	.	G	A	935.12	PASS	AC=1;AF=0.5;AN=2;DP=673;MQ=60;set=variant11-variant12-variant13-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:990,0,1461:38,17,28,13
chr2	122208886	.	G	A	44.97	PASS	AC=1;AF=0.571;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:25:68,0,25:0,1,1,2
chr2	122216419	.	A	G	1119.69	PASS	AC=1;AF=0.5;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant13-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,42:89:99:1133,0,1156:30,17,24,18
chr2	122273187	.	C	G	736.33	PASS	AC=1;AF=0.536;AN=2;DP=351;MQ=60;set=variant6-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant25-variant32-variant33-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:552,0,564:15,0,15,0
chr2	122283313	.	G	T	440.1	PASS	AC=1;AF=0.536;AN=2;DP=860;FractionInformativeReads=1;MQ=60;set=variant6-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant25-variant32-variant33-variant35-variant37-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:755,0,1178:29,13,20,13
chr2	122286442	.	A	G	280.11	PASS	AC=1;AF=0.5;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant13-variant15-variant18-variant25-variant35-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,11:45:99:287,0,891:12,22,1,10
chr2	122520713	.	GTT	GTTT,GTTTT,GT,G	137	PASS	AC=1,0,0,0;AF=0.283,0.022,0.174,0.043;AN=2;DP=1404;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-filterInvariant9-filterInvariant10-filterInvariant13-variant15-filterInvariant16-filterInvariant19-filterInvariant20-filterInvariant22-variant23-filterInvariant24-filterInvariant26-variant27-filterInvariant31-filterInvariant33-variant34-variant36-variant38	GT:DP:GQ:SB	0/1:37:99:1,20,4,12
chr2	124782826	.	C	T	573.37	PASS	AC=1;AF=0.5;AN=2;DP=564;MQ=60;set=variant6-variant7-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant29-variant31-variant32-variant35-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:448,0,475:13,4,12,4
chr2	124782932	.	T	C	1342.16	PASS	AC=1;AF=0.5;AN=2;DP=2143;MQ=60;set=variant6-variant7-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant29-variant31-variant32-variant35-variant36-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1189,0,1275:33,21,22,25
chr2	125192068	.	T	C	1123.38	PASS	AC=1;AF=0.932;AN=2;DP=5498;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,62:122:99:1419,0,1420:33,27,33,29
chr2	125204264	.	A	G	1076.57	PASS	AC=1;AF=0.5;AN=2;DP=594;MQ=60;set=variant-variant3-variant15-variant16-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:48,55:103:99:1241,0,1161:24,24,31,24
chr2	125204285	.	G	T	1757.74	PASS	AC=1;AF=0.577;AN=2;DP=1448;MQ=60;set=variant6-variant9-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant27-variant29-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1318,0,1425:30,29,26,27
chr2	125204768	.	CA	C	366.31	PASS	AC=1;AF=0.577;AN=2;DP=306;MQ=60;set=variant6-variant9-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant27-variant29-variant36-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:360,0,154:1,5,4,10
chr2	125232609	.	G	T	801.34	PASS	AC=1;AF=0.875;AN=2;DP=3455;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,44:84:99:1206,0,1260:8,32,12,32
chr2	125669260	.	A	G	548.54	PASS	AC=1;AF=0.682;AN=2;DP=536;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:94:94,0,392:0,10,1,3
chr2	127413616	.	G	A	667.41	PASS	AC=2;AF=0.692;AN=2;DP=1683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,38:39:70:960,70,0:1,0,23,15
chr2	127413949	.	C	G	371.76	PASS	AC=1;AF=0.5;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant2-variant15	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:893,0,742:13,16,14,21
chr2	127447763	.	G	A	732.66	PASS	AC=2;AF=0.662;AN=2;DP=2397;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2402,216,0:0,0,51,21
chr2	127453479	.	G	A	129.41	PASS	AC=1;AF=0.5;AN=2;DP=440;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant13-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant28-variant33-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:531,0,373:11,2,13,7
chr2	127453664	.	A	C	1395.74	PASS	AC=2;AF=0.662;AN=2;DP=5943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5936,582,0:0,0,110,85
chr2	127454230	.	T	G	193.62	PASS	AC=1;AF=0.5;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant13-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant28-variant33-variant36-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:279,0,178:2,5,4,7
chr2	127657221	.	C	T	1009.57	PASS	AC=2;AF=0.814;AN=2;DP=1351;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1500,131,0:0,0,23,21
chr2	127657441	.	T	C	747.58	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:776,0,903:14,23,14,21
chr2	127807941	.	C	T	529.76	PASS	AC=1;AF=0.556;AN=2;DP=751;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,51:116:99:1459,0,1721:45,20,39,12
chr2	127808161	.	G	A	1599.28	PASS	AC=1;AF=0.556;AN=2;DP=1536;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,115:219:99:4390,0,5215:40,64,44,71
chr2	127808170	.	G	A	1556.7	PASS	AC=1;AF=0.556;AN=2;DP=1421;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,107:206:99:4220,0,5138:37,62,42,65
chr2	127816743	.	G	T	1124.46	PASS	AC=1;AF=0.556;AN=2;DP=1233;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,70:137:99:1515,0,1605:31,36,32,38
chr2	127818406	.	G	A	78.36	PASS	AC=1;AF=0.556;AN=2;DP=175;MQ=60;set=variant-variant15-variant19-variant20-variant31-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:348,0,316:3,7,1,8
chr2	127819669	.	C	T	1602.97	PASS	AC=1;AF=0.5;AN=2;DP=173;FS=3.63;FractionInformativeReads=1;MQ=60;MQRankSum=1.359;QD=9.27;ReadPosRankSum=-1.423;SOR=0.977;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:98,75:173:99:1631,0,2286:58,40,49,26
chr2	127821411	.	G	GCAGCACGCAGGCTGGGCACCA	1331.1	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=4.449;FractionInformativeReads=0.713;MQ=59.76;MQRankSum=-0.271;QD=14.16;ReadPosRankSum=-2.636;SOR=0.234;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:48,19:67:99:1368,0,3862:37,11,12,7
chr2	127826533	.	A	G	851.04	PASS	AC=1;AF=0.604;AN=2;DP=2412;MQ=60;set=variant-variant4-variant7-variant9-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,40:97:99:941,0,1405:27,30,18,22
chr2	127826632	.	A	G	571.04	PASS	AC=1;AF=0.559;AN=2;DP=797;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant19-variant20-variant21-variant31-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:264,0,659:6,17,5,8
chr2	127864921	.	C	G	172.53	PASS	AC=2;AF=0.594;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant13-variant15-variant17-variant19-variant21-variant24-variant27-variant29-variant30-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:990,66,0:0,0,5,17
chr2	127864922	.	G	C	172.53	PASS	AC=2;AF=0.594;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant13-variant15-variant17-variant19-variant21-variant24-variant27-variant29-variant30-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:990,66,0:0,0,5,17
chr2	127944564	.	G	C	2328.84	PASS	AC=1;AF=0.5;AN=2;DP=1284;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant15-variant26-variant30-variant40	GT:AD:DP:GQ:PL:SB	0/1:79,87:166:99:2387,0,2042:33,46,37,50
chr2	127944781	.	A	AC	2858.62	PASS	AC=1;AF=0.738;AN=2;DP=3507;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,52:125:99:1723,0,2566:38,35,23,29
chr2	127953054	.	A	C	1292.34	PASS	AC=1;AF=0.538;AN=2;DP=3319;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,85:154:99:2166,0,1684:33,36,34,51
chr2	127963071	.	C	G	1056.13	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=1.433;FractionInformativeReads=1;MQ=60;MQRankSum=0.877;QD=16.5;ReadPosRankSum=-2.401;SOR=0.461;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:1084,0,944:26,3,30,5
chr2	128015367	.	C	T	557.97	PASS	AC=1;AF=0.866;AN=2;DP=815;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:403,0,454:6,11,5,10
chr2	128028792	.	T	C	1841.95	PASS	AC=1;AF=0.857;AN=2;DP=2959;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:705,0,1037:27,14,19,11
chr2	128029065	.	GA	G	481.39	PASS	AC=1;AF=0.536;AN=2;DP=1035;MQ=60;set=variant2-variant3-filterInvariant5-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:369,0,451:5,15,5,12
chr2	128050000	.	A	G	341.84	PASS	AC=1;AF=0.897;AN=2;DP=232;set=variant3-variant5-variant6-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,189:6,0,3,0
chr2	128050134	.	T	C	1436.56	PASS	AC=1;AF=0.857;AN=2;DP=2382;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:552,0,1014:19,14,14,8
chr2	128057560	.	C	CAG	10013.1	PASS	AC=2;AF=0.932;AN=2;DP=9486;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,263:263:99:11725,791,0:0,0,127,136
chr2	128060017	.	CCA	C	1937.9	PASS	AC=1;AF=0.775;AN=2;DP=2449;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:846,0,747:18,8,17,13
chr2	128061283	.	GAACA	G	3063.36	PASS	AC=1;AF=0.523;AN=2;DP=4291;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,84:208:99:3135,0,5545:56,68,32,52
chr2	128063506	.	CTT	C,CT	2140.69	PASS	AC=0,1;AF=0.25,0.5;AN=2;DP=7424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:164:99:49,25,45,45
chr2	128063846	.	C	T	1192.68	PASS	AC=1;AF=0.523;AN=2;DP=2206;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,74:138:99:2220,0,2049:14,50,19,55
chr2	128063945	.	T	C	1998.93	PASS	AC=1;AF=0.869;AN=2;DP=2134;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,35:77:99:969,0,1112:19,23,20,15
chr2	128064423	.	CGTGTGT	C,CGT,CGTGT,CGTGTGTGTGTGT	7846.14	PASS	AC=0,0,1,0;AF=0.239,0.284,0.307,0.011;AN=2;DP=9545;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:204:99:37,41,66,60
chr2	128079806	.	A	G	359.07	PASS	AC=1;AF=0.607;AN=2;DP=678;MQ=60;set=variant2-variant4-variant10-variant13-variant15-variant20-variant21-variant23-variant26-variant30-variant31-variant33-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:714,0,835:13,22,9,20
chr2	128087651	.	C	T	810.06	PASS	AC=1;AF=0.577;AN=2;DP=1236;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant13-variant15-variant20-variant21-variant26-variant30-variant31-variant33-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,59:139:99:1355,0,1973:31,49,25,34
chr2	128145771	.	C	T	417.33	PASS	AC=1;AF=0.577;AN=2;DP=307;MQ=60;set=variant2-variant4-variant10-variant13-variant15-variant20-variant21-variant26-variant30-variant31-variant33-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:359,0,330:8,9,10,8
chr2	128175875	.	G	A	3391.4	PASS	AC=1;AF=0.705;AN=2;DP=4374;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:1545,0,1749:45,23,43,20
chr2	128176040	.	A	T	2459.89	PASS	AC=1;AF=0.593;AN=2;DP=5032;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,96:184:99:2266,0,2127:36,52,42,54
chr2	128176195	.	G	A	261.53	PASS	AC=2;AF=1;AN=2;DP=761;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:792,54,0:0,0,2,16
chr2	128177377	.	C	T	4533.43	PASS	AC=1;AF=0.718;AN=2;DP=8138;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,108:229:99:2318,0,2850:67,54,56,52
chr2	128180872	.	G	T	3825.58	PASS	AC=1;AF=0.681;AN=2;DP=4030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,57:104:99:1461,0,1198:30,17,35,22
chr2	128181028	.	A	G	5081.22	PASS	AC=2;AF=1;AN=2;DP=7875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,231:232:99:7264,657,0:1,0,119,112
chr2	128181234	.	GC	G	2537.49	PASS	AC=1;AF=0.681;AN=2;DP=2747;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,38:83:99:991,0,1167:19,26,20,18
chr2	128183914	.	G	T	363.79	PASS	AC=1;AF=0.575;AN=2;DP=405;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant21-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:420,0,232:2,6,5,8
chr2	128184770	.	T	C	165.67	PASS	AC=1;AF=0.559;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant13-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant33-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:762,0,468:8,13,11,18
chr2	128249441	.	C	T	106.65	PASS	AC=2;AF=0.932;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:254,18,0:0,0,6,0
chr2	128252778	.	G	A	39.91	PASS	AC=1;AF=0.65;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant13-variant15-variant17-variant25-variant28-variant29-variant33-variant36	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,118:0,3,0,2
chr2	128271958	.	C	T	1065.9	PASS	AC=1;AF=0.645;AN=2;DP=3625;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,61:127:99:1465,0,1623:27,39,24,37
chr2	128281469	.	C	T	304.32	PASS	AC=1;AF=0.718;AN=2;DP=1062;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:365,0,825:4,21,1,12
chr2	128284543	.	T	C	161.93	PASS	AC=1;AF=0.583;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant25-variant28-variant29-variant33-variant34-variant36-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:270,0,293:4,8,5,6
chr2	128321770	.	G	A	611.71	PASS	AC=2;AF=0.632;AN=2;DP=2737;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2193,224,0:0,0,35,40
chr2	128338519	.	T	G	363.87	PASS	AC=1;AF=0.581;AN=2;DP=1451;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:807,0,1162:12,28,14,21
chr2	128339456	.	G	T	99.15	PASS	AC=1;AF=0.581;AN=2;DP=1853;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,25:60:99:623,0,851:22,13,18,7
chr2	128339758	.	C	G	808.37	PASS	AC=1;AF=0.647;AN=2;DP=1017;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:349,0,601:9,9,6,7
chr2	128342547	.	G	A	424.5	PASS	AC=2;AF=0.92;AN=2;DP=2916;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,80:81:99:2535,200,0:0,1,26,54
chr2	128345960	.	T	C	944.78	PASS	AC=1;AF=0.578;AN=2;DP=2723;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,40:95:99:918,0,1399:29,26,22,18
chr2	128346228	.	A	C	177.19	PASS	AC=2;AF=0.92;AN=2;DP=888;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:868,69,0:0,0,4,19
chr2	128350551	.	G	A	4438.84	PASS	AC=1;AF=0.647;AN=2;DP=6359;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,117:237:99:3239,0,3262:38,82,34,83
chr2	128350578	.	T	TG	2037.52	PASS	AC=2;AF=0.989;AN=2;DP=4954;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4653,394,0:0,0,29,101
chr2	128351346	.	T	C	72.46	PASS	AC=1;AF=0.671;AN=2;DP=714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,5:24:99:118,0,700:3,16,1,4
chr2	128363530	.	G	GC	1662.15	PASS	AC=2;AF=1;AN=2;DP=1850;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1528,129,0:0,0,7,36
chr2	128369896	.	A	G	576.67	PASS	AC=1;AF=0.713;AN=2;DP=4281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:1695,0,1944:38,30,34,29
chr2	128377833	.	C	G	1114.23	PASS	AC=1;AF=0.713;AN=2;DP=3979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,64:99:99:1638,0,813:13,22,31,33
chr2	128382859	.	C	T	157.25	PASS	AC=1;AF=0.7;AN=2;DP=727;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:240,0,620:15,6,9,0
chr2	128384965	.	A	G	137.52	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=957;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:91,37:128:99:191,0,1720:64,27,1,36
chr2	128390758	.	G	A	704.11	PASS	AC=1;AF=0.5;AN=2;DP=144;FS=0;FractionInformativeReads=1;set=variant4-variant15-variant30-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:474,0,620:15,3,13,3
chr2	128393261	.	T	C	1452.43	PASS	AC=1;AF=0.737;AN=2;DP=1964;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:892,0,564:15,7,21,11
chr2	128394877	.	C	CT,T	7926.36	PASS	AC=1,0;AF=0.237,0.5;AN=2;DP=7260;MQ=60;set=variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant3-variant4-variant33-variant2-variant13-variant34-variant35-variant6-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:234:99:61,58,59,56
chr2	128396807	.	A	G	1482.56	PASS	AC=1;AF=0.714;AN=2;DP=1634;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:869,0,836:13,15,17,13
chr2	128400608	.	C	T	2745.76	PASS	AC=1;AF=0.621;AN=2;DP=3477;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,73:141:99:1704,0,1550:31,37,37,36
chr2	128400783	.	G	A	1371.51	PASS	AC=1;AF=0.708;AN=2;DP=1780;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:820,0,623:12,15,17,17
chr2	128401091	.	A	G	2519.28	PASS	AC=1;AF=0.731;AN=2;DP=2962;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,39:83:99:943,0,1029:21,23,19,20
chr2	128401912	.	G	A	287.99	PASS	AC=1;AF=0.635;AN=2;DP=275;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,115:1,2,1,2
chr2	128405642	.	C	T	420.31	PASS	AC=1;AF=0.5;AN=2;DP=155;MQ=60;set=variant15-variant30-variant40-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:449,0,722:15,11,11,4
chr2	128405721	.	T	C	1279.99	PASS	AC=1;AF=0.603;AN=2;DP=1889;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:713,0,856:18,16,11,18
chr2	128407499	.	G	A	1458.29	PASS	AC=1;AF=0.727;AN=2;DP=1640;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:566,0,809:17,13,12,10
chr2	128407771	.	C	T	241.45	PASS	AC=1;AF=0.568;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant15-variant17-variant18-variant21-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:145,0,319:3,6,1,4
chr2	128408121	.	G	GC	2585.67	PASS	AC=2;AF=1;AN=2;DP=2766;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3095,235,0:0,0,45,31
chr2	128460956	.	G	A	1938.8	PASS	AC=2;AF=0.989;AN=2;DP=2154;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1977,177,0:0,0,23,36
chr2	128604232	.	A	T	488.99	PASS	AC=2;AF=0.688;AN=2;DP=815;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:80:809,80,0:0,0,11,16
chr2	128605207	.	TA	T	596.38	PASS	AC=1;AF=0.5;AN=2;DP=3189;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,47:77:99:648,0,426:21,9,33,14
chr2	128608271	.	GAA	GA,G	888.45	PASS	AC=2,0;AF=0.764,0.014;AN=2;DP=824;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:22:66:0,0,6,16
chr2	128608290	.	T	C	842.46	PASS	AC=2;AF=0.786;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:60:849,60,0:0,0,5,14
chr2	128608384	.	G	T	73.47	PASS	AC=2;AF=0.727;AN=2;DP=150;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant28-variant29-variant30-variant32-variant35-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,1,5
chr2	128610719	.	T	C	839.97	PASS	AC=2;AF=0.625;AN=2;DP=2656;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3300,282,0:0,0,44,50
chr2	128615330	.	C	G	1225.05	PASS	AC=2;AF=0.682;AN=2;DP=1557;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1839,159,0:0,0,38,15
chr2	128615390	.	G	T	1862.23	PASS	AC=2;AF=0.682;AN=2;DP=2848;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3140,305,0:0,0,63,39
chr2	128620363	.	A	AT	174.97	PASS	AC=2;AF=0.615;AN=2;DP=649;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant39-variant40-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:654,69,0:0,0,6,17
chr2	128621094	.	A	G	679.24	PASS	AC=2;AF=0.676;AN=2;DP=2060;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2296,224,0:0,0,29,46
chr2	128622491	.	G	A	1078.15	PASS	AC=2;AF=0.676;AN=2;DP=1887;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1902,176,0:0,0,31,28
chr2	128631565	.	C	G	1626.76	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=0.576;FractionInformativeReads=1;MQ=60;MQRankSum=-1.332;QD=9.63;ReadPosRankSum=2.631;SOR=0.781;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:100,69:169:99:1655,0,2589:50,50,36,33
chr2	128642367	.	C	G	265.64	PASS	AC=2;AF=0.707;AN=2;DP=949;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,41:43:79:1103,79,0:1,1,21,20
chr2	128699750	.	G	C	518.7	PASS	AC=2;AF=0.625;AN=2;DP=1104;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant19-variant24-variant25-variant26-variant29-variant32-variant33-variant35-variant37-variant39	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2357,228,0:0,0,31,45
chr2	128708063	.	T	C	1578.42	PASS	AC=2;AF=0.989;AN=2;DP=3197;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2297,222,0:0,0,30,44
chr2	128744580	.	A	G	1010.24	PASS	AC=2;AF=0.93;AN=2;DP=2974;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2336,234,0:0,0,31,47
chr2	128753854	.	T	C	1070.58	PASS	AC=2;AF=0.989;AN=2;DP=3077;MQ=60;MQRankSum=-1.667;ReadPosRankSum=-2.723;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2152,215,0:0,0,42,30
chr2	128757804	.	C	T	2393.89	PASS	AC=2;AF=0.829;AN=2;DP=2512;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1850,184,0:0,0,31,31
chr2	128848683	.	G	T	211.88	PASS	AC=2;AF=0.989;AN=2;DP=704;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:705,66,0:0,0,15,7
chr2	128849114	.	T	C	2024.75	PASS	AC=2;AF=0.989;AN=2;DP=4229;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3359,341,0:0,0,42,72
chr2	128860835	.	A	G	1428.81	PASS	AC=2;AF=1;AN=2;DP=1834;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.075;ReadPosRankSum=1.657;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2034,153,0:0,0,6,45
chr2	128870808	.	T	C	1467.55	PASS	AC=2;AF=0.989;AN=2;DP=1873;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;ReadPosRankSum=-0.512;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1024,102,0:0,0,13,21
chr2	128872595	.	C	T	512.42	PASS	AC=2;AF=0.593;AN=2;DP=831;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:846,72,0:0,0,19,5
chr2	128874061	.	G	A	765.23	PASS	AC=2;AF=0.989;AN=2;DP=1182;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1270,111,0:0,0,9,28
chr2	128877837	.	G	C	335.14	PASS	AC=2;AF=0.989;AN=2;DP=429;FS=0;MQ=60;MQRankSum=1.683;ReadPosRankSum=-0.573;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:230,21,0:0,0,5,2
chr2	128878014	.	G	A	2138.88	PASS	AC=2;AF=0.989;AN=2;DP=3644;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2518,260,0:0,0,45,42
chr2	128878667	.	T	C	879.88	PASS	AC=2;AF=0.989;AN=2;DP=671;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:663,48,0:0,0,16,0
chr2	128878979	.	C	CT,CTT,CTTT	213.99	PASS	AC=2,0,0;AF=0.318,0.242,0.045;AN=2;DP=957;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant35-filterInvariant36-variant37-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:19:34:0,2,5,12
chr2	128879022	.	G	C	328.54	PASS	AC=2;AF=1;AN=2;DP=339;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:470,33,0:0,0,0,11
chr2	128880899	.	T	A	1307.4	PASS	AC=2;AF=0.989;AN=2;DP=1906;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1877,186,0:0,0,22,40
chr2	128880993	.	A	G	106.77	PASS	AC=2;AF=1;AN=2;DP=280;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,0,11
chr2	128913757	.	G	A	221.58	PASS	AC=2;AF=0.597;AN=2;DP=1104;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1223,117,0:0,0,25,14
chr2	128915180	.	T	G	297.12	PASS	AC=1;AF=0.5;AN=2;DP=34;FractionInformativeReads=1;MQ=60;set=variant15-variant40	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:325,0,144:0,4,2,7
chr2	128934400	.	T	C	1550.41	PASS	AC=2;AF=0.595;AN=2;DP=4423;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4361,455,0:0,0,74,78
chr2	128936000	.	T	C	888.86	PASS	AC=2;AF=0.589;AN=2;DP=1390;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2153,207,0:0,0,32,37
chr2	128936171	.	TATG	T	1042.5	PASS	AC=2;AF=0.596;AN=2;DP=578;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1866,126,0:0,0,20,22
chr2	128939598	.	G	A	1237.18	PASS	AC=2;AF=0.593;AN=2;DP=1277;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1921,183,0:0,0,39,22
chr2	128939695	.	A	G	1968.98	PASS	AC=2;AF=0.548;AN=2;DP=2333;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant19-variant22-variant24-variant27-variant29-variant32-variant33-variant35-variant37-variant39-variant40-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4130,375,0:0,0,72,53
chr2	128939817	.	G	A	2083.48	PASS	AC=2;AF=0.589;AN=2;DP=4633;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,209:209:99:6111,625,0:0,0,97,112
chr2	128941511	.	TGAGAGAGA	TGTGTGTGTGTGTGAGAGAGAGA,TGTGTGTGTGTGAGAGAGAGAGA,TGTGTGTGTGAGAGAGAGA,T,TGAGAGAGAGA,TGTGTGTGTGTGTGTGAGAGAGAGA	32.57	PASS	AC=0,0,1,0,0,0;AF=0.167,0.056,0.111,0.056,0.056,0.056;AN=2;DP=132;set=variant8-variant10-variant15-variant20-variant22-variant24-variant35-variant37-variant43	GT:DP:GQ:SB	0/3:13:99:2,4,2,5
chr2	128944424	.	T	C	582.76	PASS	AC=2;AF=0.597;AN=2;DP=2434;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2620,240,0:0,0,25,55
chr2	128947505	.	G	A	873.39	PASS	AC=2;AF=0.589;AN=2;DP=2262;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4191,384,0:0,0,56,72
chr2	128947895	.	T	C	865.43	PASS	AC=2;AF=0.589;AN=2;DP=2029;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3713,317,0:0,0,37,69
chr2	128949079	.	C	CT	166.47	PASS	AC=2;AF=0.589;AN=2;DP=1040;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1485,135,0:0,0,13,32
chr2	128949840	.	GTT	GT,G	214.57	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=6387;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:156:99:57,49,29,21
chr2	128949893	.	A	G	2561.91	PASS	AC=2;AF=0.589;AN=2;DP=4276;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:6481,563,0:0,0,90,99
chr2	130681407	.	G	C	331.77	PASS	AC=1;AF=0.756;AN=2;DP=971;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:819,0,395:2,11,4,19
chr2	130681447	.	G	A	151.77	PASS	AC=1;AF=0.763;AN=2;DP=488;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,13:17:99:430,0,119:0,4,2,11
chr2	130737541	.	C	T	181.69	PASS	AC=1;AF=0.697;AN=2;DP=1077;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:427,0,417:7,6,9,4
chr2	130737578	.	G	A	205.39	PASS	AC=1;AF=0.513;AN=2;DP=1964;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,21:58:99:471,0,996:25,12,12,9
chr2	130738163	.	G	A	2318.4	PASS	AC=1;AF=0.697;AN=2;DP=7358;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,123:237:99:2732,0,2589:49,65,50,73
chr2	130750446	.	C	A	267.2	PASS	AC=1;AF=0.5;AN=2;DP=2319;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,15:52:99:243,0,883:20,17,6,9
chr2	130832185	.	G	A	215.45	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=2109;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:2,44:46:88:1094,88,0:1,1,30,14
chr2	130832292	.	T	A	378.42	PASS	AC=1;AF=0.659;AN=2;DP=3655;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:58,86:144:99:1662,0,1401:44,14,40,46
chr2	130832873	.	G	A	311.83	PASS	AC=1;AF=0.5;AN=2;DP=4654;set=variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:129,24:153:99:135,0,3459:65,64,12,12
chr2	130833159	.	G	A	295.71	PASS	AC=2;AF=0.571;AN=2;DP=811;set=variant-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-filterInvariant20-variant22-variant24-filterInvariant26-variant27-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:766,75,0:0,0,5,20
chr2	130872956	.	G	T	53.09	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=413;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:98,17:115:99:237,0,12577:35,63,3,14
chr2	130872964	.	T	A	45.93	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=185;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:95,7:102:74:74,0,12628:35,60,1,6
chr2	130932371	.	C	A	421.52	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;set=variant2-variant5-variant12-variant13-variant15-variant37-variant38	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:241,0,273:7,3,7,1
chr2	130941065	.	T	C	1317.48	PASS	AC=2;AF=0.909;AN=2;DP=3170;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2265,207,0:0,0,45,24
chr2	130948314	.	G	GT,GTT	1011.49	PASS	AC=1,0;AF=0.595,0.024;AN=2;DP=1389;set=variant4-variant5-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant22-filterInvariant24-variant25-variant26-variant30-variant31-variant35-variant36-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:52:99:12,24,4,12
chr2	130949411	.	G	T	1363.59	PASS	AC=2;AF=0.919;AN=2;DP=5221;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4605,438,0:0,0,92,54
chr2	130951548	.	G	A	2349.83	PASS	AC=2;AF=0.898;AN=2;DP=6778;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:5301,449,0:0,0,60,90
chr2	130951566	.	G	A	2468.97	PASS	AC=2;AF=0.83;AN=2;DP=6538;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4963,427,0:0,0,64,79
chr2	130987429	.	C	T	1523.92	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=1.761;FractionInformativeReads=1;MQ=60;MQRankSum=-1.99;QD=16.39;ReadPosRankSum=0.075;SOR=0.955;set=variant15	GT:AD:DP:GQ:PL:SB	0/1:37,56:93:99:1552,0,879:21,16,35,21
chr2	130988166	.	A	G	691.88	PASS	AC=1;AF=0.5;AN=2;DP=4342;set=variant-variant2-variant3-variant6-variant9-variant10-filterInvariant12-filterInvariant14-variant15-filterInvariant17-variant18-variant20-filterInvariant24-filterInvariant25-variant26-variant31-filterInvariant32-variant35-filterInvariant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:198,71:269:99:1449,0,5742:92,106,49,22
chr2	130988203	.	C	T	753.16	PASS	AC=1;AF=0.5;AN=2;DP=4189;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:170,119:289:99:2503,0,4943:82,88,72,47
chr2	130988216	.	C	G	876.86	PASS	AC=1;AF=0.5;AN=2;DP=4133;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:175,127:302:99:2711,0,5014:86,89,73,54
chr2	130988276	.	C	T	474.82	PASS	AC=1;AF=0.5;AN=2;DP=3849;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:201,111:312:99:2304,0,5508:103,98,52,59
chr2	130988410	.	G	A	1200.75	PASS	AC=1;AF=0.5;AN=2;DP=5350;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:243,136:379:99:4858,0,12352:127,116,69,67
chr2	130988421	.	C	T	1327.45	PASS	AC=1;AF=0.5;AN=2;DP=5753;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:259,145:404:99:5038,0,12762:134,125,74,71
chr2	130988663	.	G	T	3479.75	PASS	AC=1;AF=0.5;AN=2;DP=633;FractionInformativeReads=1;set=variant15-variant26	GT:AD:DP:GQ:PL:SB	0/1:169,154:323:99:3508,0,4275:85,84,75,79
chr2	131097247	.	G	A	3020.67	PASS	AC=1;AF=0.542;AN=2;DP=1949;MQ=60;set=variant4-variant9-variant11-variant14-variant15-variant18-variant22-variant23-variant26-variant31-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:82,95:177:99:3703,0,3686:29,53,46,49
chr2	131097253	.	G	C	2935.67	PASS	AC=1;AF=0.542;AN=2;DP=1887;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant11-variant14-variant15-variant18-variant22-variant23-variant26-variant31-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:70,97:167:99:3751,0,3480:27,43,47,50
chr2	131099374	.	G	GGC,GGCCCC,GGCCCCC	99.28	PASS	AC=0,1,0;AF=0.167,0.25,0.083;AN=2;DP=90;MQ=60;set=variant11-variant15-variant22-variant30-variant33-filterInvariant34	GT:DP:GQ:SB	0/2:16:99:1,8,7,0
chr2	131099378	.	G	C	55.5	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant23-variant30-variant33-variant34	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:84:84,0,1766:0,7,3,0
chr2	131099382	.	G	C	48.35	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant11-variant15-variant22-variant30-variant33	GT:AD:DP:GQ:PL:SB	0/1:14,3:17:68:68,0,2119:4,10,3,0
chr2	131100496	.	G	A	2241.22	PASS	AC=1;AF=0.542;AN=2;DP=2326;MQ=60;set=variant4-variant9-variant11-variant14-variant15-variant18-variant22-variant23-variant26-variant31-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:145,115:260:99:2712,0,3670:65,80,49,66
chr2	131100734	.	G	A	1897.16	PASS	AC=1;AF=0.542;AN=2;DP=1751;MQ=60;set=variant4-variant9-variant11-variant14-variant15-variant18-variant22-variant23-variant26-variant31-variant35-variant40	GT:AD:DP:GQ:PL:SB	0/1:93,88:181:99:2197,0,2297:52,41,51,37
chr2	131104049	.	C	T	4458.62	PASS	AC=1;AF=0.583;AN=2;DP=943;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant13-variant15-variant29-variant37	GT:AD:DP:GQ:PL:SB	0/1:89,100:189:99:2567,0,2227:42,47,47,53
chr2	131114010	.	G	A	778.46	PASS	AC=1;AF=0.545;AN=2;DP=390;MQ=60;set=variant4-variant9-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:577,0,854:10,12,12,8
chr2	131114042	.	G	T	525.39	PASS	AC=1;AF=0.533;AN=2;DP=604;MQ=60;set=variant2-variant4-variant9-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:580,0,976:15,11,15,6
chr2	131116404	.	T	C	1354.99	PASS	AC=1;AF=0.559;AN=2;DP=2451;MQ=60;set=variant2-variant4-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,84:157:99:2058,0,1774:39,34,46,38
chr2	131117120	.	G	A	985.44	PASS	AC=1;AF=0.5;AN=2;DP=1087;MQ=60;set=variant4-variant14-variant15-variant18-variant26-variant31-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,85:152:99:2117,0,1631:27,40,37,48
chr2	131129928	.	AGACGGG	A	1055.16	PASS	AC=1;AF=0.563;AN=2;DP=1468;MQ=60;set=variant2-variant4-variant9-variant10-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,33:84:99:1222,0,3534:32,19,18,15
chr2	131130678	.	T	C	512.57	PASS	AC=1;AF=0.563;AN=2;DP=1331;MQ=60;set=variant2-variant4-variant9-variant10-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,49:81:99:1494,0,895:16,16,28,21
chr2	131131424	.	G	C	918.92	PASS	AC=1;AF=0.533;AN=2;DP=1002;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:778,0,901:15,22,13,17
chr2	131131481	.	T	TAGTC	1285.32	PASS	AC=1;AF=0.563;AN=2;DP=987;MQ=60;set=variant2-variant4-variant9-variant10-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,25:61:99:921,0,1589:17,19,15,10
chr2	131131525	.	C	T	648.79	PASS	AC=1;AF=0.533;AN=2;DP=1046;MQ=60;set=variant2-variant4-variant9-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1227,0,922:20,14,28,13
chr2	131131866	.	A	G	743.13	PASS	AC=1;AF=0.533;AN=2;DP=735;MQ=60;set=variant2-variant4-variant9-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:906,0,2129:11,23,7,17
chr2	131131869	.	A	G	743.13	PASS	AC=1;AF=0.533;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant11-variant14-variant15-variant18-variant23-variant25-variant26-variant31-variant36-variant37-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:906,0,2129:11,23,7,17
chr2	131132661	.	C	T	839.43	PASS	AC=1;AF=0.5;AN=2;DP=633;MQ=60;set=variant4-variant14-variant15-variant18-variant26-variant31-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,45:88:99:1094,0,1056:20,23,23,22
chr2	131221102	.	T	C	794.89	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=1983;FS=0;MQRankSum=-2.896;ReadPosRankSum=0.055;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1437,144,0:0,0,41,7
chr2	131221170	.	C	T	2296.48	DRAGENHardSNP	AC=1;AF=0.895;AN=2;DP=7370;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:126,103:229:99:2001,0,2645:77,49,61,42
chr2	131221445	.	G	A	33.29	DRAGENHardSNP	AC=2;AF=0.988;AN=2;DP=218;FS=0;FractionInformativeReads=1;MQRankSum=-0.55;ReadPosRankSum=0.937;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:120,12,0:0,0,0,4
chr2	131266530	.	C	A	2870.96	PASS	AC=1;AF=0.875;AN=2;DP=11532;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:104,300:404:99:7271,0,1728:44,60,162,138
chr2	131266584	.	A	G	88.34	PASS	AC=1;AF=0.5;AN=2;DP=2061;set=filterInvariant4-filterInvariant10-filterInvariant14-filterInvariant15-filterInvariant18-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:312,45:357:99:174,0,7708:150,162,13,32
chr2	131266746	.	C	T	674.72	PASS	AC=1;AF=0.556;AN=2;DP=297;FS=0;set=variant4-variant14-variant15-variant18-variant25-variant26-variant31-variant40-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:632,0,471:0,15,0,19
chr2	131369168	.	G	A	209.26	PASS	AC=1;AF=0.5;AN=2;DP=185;FS=0;FractionInformativeReads=1;set=variant4-variant14-variant15-variant18-variant25-filterInvariant26-filterInvariant31-filterInvariant40	GT:AD:DP:GQ:PL:SB	0/1:24,7:31:99:126,0,754:24,0,7,0
chr2	131379209	.	T	C	71.75	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=256;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:159,0,609:16,13,6,6
chr2	131379294	.	G	T	82.48	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=103;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:79:151,0,79:1,3,2,5
chr2	131407692	.	T	C	158.89	PASS	AC=1;AF=0.512;AN=2;DP=426;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:127,0,181:5,0,3,1
chr2	131407943	.	T	G	116.99	PASS	AC=1;AF=0.5;AN=2;DP=1368;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant7-filterInvariant9-filterInvariant10-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:356,0,568:8,16,4,12
chr2	131414061	.	A	G	59.59	PASS	AC=1;AF=0.513;AN=2;DP=719;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:358,0,294:8,1,10,0
chr2	131414073	.	T	A	142.1	PASS	AC=1;AF=0.511;AN=2;DP=1012;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:421,0,282:8,1,11,1
chr2	131414176	.	C	T	1123.66	PASS	AC=1;AF=0.511;AN=2;DP=5871;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,85:128:99:1932,0,874:28,15,52,33
chr2	131414338	.	G	A	832.56	PASS	AC=1;AF=0.5;AN=2;DP=1172;FractionInformativeReads=1;set=filterInvariant2-variant12-filterInvariant15-filterInvariant27-variant36-variant38	GT:AD:DP:GQ:PL:SB	0/1:73,95:168:99:2028,0,1508:28,45,51,44
chr2	131414394	.	C	T	130.59	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4635;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:91,25:116:99:370,0,2159:45,46,7,18
chr2	131414878	.	A	C	225.96	PASS	AC=2;AF=0.563;AN=2;DP=223;Fractio