##fileformat=VCFv4.2
##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location">
##FILTER=<ID=LowQual,Description="Low quality">
##FILTER=<ID=my_filter,Description="QD < 2.0 || FS > 60.0 || MQ < 40.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block">
##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=RGQ,Number=1,Type=Integer,Description="Unconditional reference genotype confidence, encoded as a phred quality -10*log10 p(genotype call is wrong)">
##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias.">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/export/home/fperez/resources/human_reference/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=16 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=filtered_snp.vcf)]), (RodBindingCollection [(RodBinding name=variant2 source=filtered_indel.vcf)])] out=/export/home/fperez/Trusigth-One_Villareal/intermediate_data/bySAMPLE/filtered_output.vcf genotypemergeoption=UNSORTED filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=null printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Thu May 03 21:25:06 CDT 2018",Epoch=1525400706347,Version=3.8-0-ge9d806836>
##GATKCommandLine.GenotypeGVCFs=<ID=GenotypeGVCFs,CommandLineOptions="analysis_type=GenotypeGVCFs input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/export/home/fperez/resources/human_reference/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=16 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=Sample_SEC-2-18-1/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant2 source=Sample_SEC-2-18-2/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant3 source=Sample_SEC-2-18-3/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant4 source=Sample_SEC-2-18-4/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant5 source=Sample_SEC-2-18-5/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant6 source=Sample_SEC-2-18-6/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant7 source=Sample_SEC-2-18-7/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant8 source=Sample_SEC-2-18-8/raw.vcf)]), (RodBindingCollection [(RodBinding name=variant9 source=Sample_SEC-2-18-9/raw.vcf)])] out=/export/home/fperez/Trusigth-One_Villareal/intermediate_data/bySAMPLE/output.vcf includeNonVariantSites=false uniquifySamples=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 annotation=[] group=[StandardAnnotation] dbsnp=(RodBinding name= source=UNBOUND) filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Thu May 03 21:23:41 CDT 2018",Epoch=1525400621243,Version=3.8-0-ge9d806836>
##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[aln_recaled2.bam] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=[/export/home/fperez/Trusigth-One_Villareal/input_data/manifest/TruSight_One_v1_RGR.bed] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/export/home/fperez/resources/human_reference/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=16 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=LINEAR variant_index_parameter=128000 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[StrandBiasBySample] excludeAnnotation=[ChromosomeCounts, FisherStrand, StrandOddsRatio, QualByDepth] group=[StandardAnnotation, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=GVCF bamOutput=null bamWriterType=CALLED_HAPLOTYPES emitDroppedReads=false disableOptimizations=false annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=-0.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.0 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=true gcpHMM=10 pair_hmm_implementation=FASTEST_AVAILABLE phredScaledGlobalReadMismappingRate=45 noFpga=false nativePairHmmThreads=1 useDoublePrecision=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=3 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=false keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxReadsInMemoryPerSample=30000 maxTotalReadsInMemory=10000000 maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Thu May 03 21:13:58 CDT 2018",Epoch=1525400038507,Version=3.8-0-ge9d806836>
##GATKCommandLine.SelectVariants=<ID=SelectVariants,CommandLineOptions="analysis_type=SelectVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/export/home/fperez/resources/human_reference/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=16 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=output.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=/export/home/fperez/Trusigth-One_Villareal/intermediate_data/bySAMPLE/output.snp.vcf sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] exclude_sample_expressions=[] selectexpressions=[] invertselect=false excludeNonVariants=false excludeFiltered=false preserveAlleles=false removeUnusedAlternates=false restrictAllelesTo=ALL keepOriginalAC=false keepOriginalDP=false mendelianViolation=false invertMendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[SNP] selectTypeToExclude=[] keepIDs=null excludeIDs=null fullyDecode=false justRead=false maxIndelSize=2147483647 minIndelSize=0 maxFilteredGenotypes=2147483647 minFilteredGenotypes=0 maxFractionFilteredGenotypes=1.0 minFractionFilteredGenotypes=0.0 maxNOCALLnumber=2147483647 maxNOCALLfraction=1.0 setFilteredGtToNocall=false ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false forceValidOutput=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Thu May 03 21:24:05 CDT 2018",Epoch=1525400645235,Version=3.8-0-ge9d806836>
##GATKCommandLine.VariantFiltration=<ID=VariantFiltration,CommandLineOptions="analysis_type=VariantFiltration input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/export/home/fperez/resources/human_reference/hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=output.snp.vcf) mask=(RodBinding name= source=UNBOUND) out=/export/home/fperez/Trusigth-One_Villareal/intermediate_data/bySAMPLE/filtered_snp.vcf filterExpression=[QD < 2.0 || FS > 60.0 || MQ < 40.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0] filterName=[my_filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=0 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false invertFilterExpression=false invertGenotypeFilterExpression=false setFilteredGtToNocall=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Thu May 03 21:24:52 CDT 2018",Epoch=1525400692200,Version=3.8-0-ge9d806836>
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=RAW_MQ,Number=1,Type=Float,Description="Raw data for RMS Mapping Quality">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##contig=<ID=chrM,assembly=hg19,length=16571>
##contig=<ID=chr1,assembly=hg19,length=249250621>
##contig=<ID=chr2,assembly=hg19,length=243199373>
##contig=<ID=chr3,assembly=hg19,length=198022430>
##contig=<ID=chr4,assembly=hg19,length=191154276>
##contig=<ID=chr5,assembly=hg19,length=180915260>
##contig=<ID=chr6,assembly=hg19,length=171115067>
##contig=<ID=chr7,assembly=hg19,length=159138663>
##contig=<ID=chr8,assembly=hg19,length=146364022>
##contig=<ID=chr9,assembly=hg19,length=141213431>
##contig=<ID=chr10,assembly=hg19,length=135534747>
##contig=<ID=chr11,assembly=hg19,length=135006516>
##contig=<ID=chr12,assembly=hg19,length=133851895>
##contig=<ID=chr13,assembly=hg19,length=115169878>
##contig=<ID=chr14,assembly=hg19,length=107349540>
##contig=<ID=chr15,assembly=hg19,length=102531392>
##contig=<ID=chr16,assembly=hg19,length=90354753>
##contig=<ID=chr17,assembly=hg19,length=81195210>
##contig=<ID=chr18,assembly=hg19,length=78077248>
##contig=<ID=chr19,assembly=hg19,length=59128983>
##contig=<ID=chr20,assembly=hg19,length=63025520>
##contig=<ID=chr21,assembly=hg19,length=48129895>
##contig=<ID=chr22,assembly=hg19,length=51304566>
##contig=<ID=chrX,assembly=hg19,length=155270560>
##contig=<ID=chrY,assembly=hg19,length=59373566>
##contig=<ID=chr1_gl000191_random,assembly=hg19,length=106433>
##contig=<ID=chr1_gl000192_random,assembly=hg19,length=547496>
##contig=<ID=chr4_ctg9_hap1,assembly=hg19,length=590426>
##contig=<ID=chr4_gl000193_random,assembly=hg19,length=189789>
##contig=<ID=chr4_gl000194_random,assembly=hg19,length=191469>
##contig=<ID=chr6_apd_hap1,assembly=hg19,length=4622290>
##contig=<ID=chr6_cox_hap2,assembly=hg19,length=4795371>
##contig=<ID=chr6_dbb_hap3,assembly=hg19,length=4610396>
##contig=<ID=chr6_mann_hap4,assembly=hg19,length=4683263>
##contig=<ID=chr6_mcf_hap5,assembly=hg19,length=4833398>
##contig=<ID=chr6_qbl_hap6,assembly=hg19,length=4611984>
##contig=<ID=chr6_ssto_hap7,assembly=hg19,length=4928567>
##contig=<ID=chr7_gl000195_random,assembly=hg19,length=182896>
##contig=<ID=chr8_gl000196_random,assembly=hg19,length=38914>
##contig=<ID=chr8_gl000197_random,assembly=hg19,length=37175>
##contig=<ID=chr9_gl000198_random,assembly=hg19,length=90085>
##contig=<ID=chr9_gl000199_random,assembly=hg19,length=169874>
##contig=<ID=chr9_gl000200_random,assembly=hg19,length=187035>
##contig=<ID=chr9_gl000201_random,assembly=hg19,length=36148>
##contig=<ID=chr11_gl000202_random,assembly=hg19,length=40103>
##contig=<ID=chr17_ctg5_hap1,assembly=hg19,length=1680828>
##contig=<ID=chr17_gl000203_random,assembly=hg19,length=37498>
##contig=<ID=chr17_gl000204_random,assembly=hg19,length=81310>
##contig=<ID=chr17_gl000205_random,assembly=hg19,length=174588>
##contig=<ID=chr17_gl000206_random,assembly=hg19,length=41001>
##contig=<ID=chr18_gl000207_random,assembly=hg19,length=4262>
##contig=<ID=chr19_gl000208_random,assembly=hg19,length=92689>
##contig=<ID=chr19_gl000209_random,assembly=hg19,length=159169>
##contig=<ID=chr21_gl000210_random,assembly=hg19,length=27682>
##contig=<ID=chrUn_gl000211,assembly=hg19,length=166566>
##contig=<ID=chrUn_gl000212,assembly=hg19,length=186858>
##contig=<ID=chrUn_gl000213,assembly=hg19,length=164239>
##contig=<ID=chrUn_gl000214,assembly=hg19,length=137718>
##contig=<ID=chrUn_gl000215,assembly=hg19,length=172545>
##contig=<ID=chrUn_gl000216,assembly=hg19,length=172294>
##contig=<ID=chrUn_gl000217,assembly=hg19,length=172149>
##contig=<ID=chrUn_gl000218,assembly=hg19,length=161147>
##contig=<ID=chrUn_gl000219,assembly=hg19,length=179198>
##contig=<ID=chrUn_gl000220,assembly=hg19,length=161802>
##contig=<ID=chrUn_gl000221,assembly=hg19,length=155397>
##contig=<ID=chrUn_gl000222,assembly=hg19,length=186861>
##contig=<ID=chrUn_gl000223,assembly=hg19,length=180455>
##contig=<ID=chrUn_gl000224,assembly=hg19,length=179693>
##contig=<ID=chrUn_gl000225,assembly=hg19,length=211173>
##contig=<ID=chrUn_gl000226,assembly=hg19,length=15008>
##contig=<ID=chrUn_gl000227,assembly=hg19,length=128374>
##contig=<ID=chrUn_gl000228,assembly=hg19,length=129120>
##contig=<ID=chrUn_gl000229,assembly=hg19,length=19913>
##contig=<ID=chrUn_gl000230,assembly=hg19,length=43691>
##contig=<ID=chrUn_gl000231,assembly=hg19,length=27386>
##contig=<ID=chrUn_gl000232,assembly=hg19,length=40652>
##contig=<ID=chrUn_gl000233,assembly=hg19,length=45941>
##contig=<ID=chrUn_gl000234,assembly=hg19,length=40531>
##contig=<ID=chrUn_gl000235,assembly=hg19,length=34474>
##contig=<ID=chrUn_gl000236,assembly=hg19,length=41934>
##contig=<ID=chrUn_gl000237,assembly=hg19,length=45867>
##contig=<ID=chrUn_gl000238,assembly=hg19,length=39939>
##contig=<ID=chrUn_gl000239,assembly=hg19,length=33824>
##contig=<ID=chrUn_gl000240,assembly=hg19,length=41933>
##contig=<ID=chrUn_gl000241,assembly=hg19,length=42152>
##contig=<ID=chrUn_gl000242,assembly=hg19,length=43523>
##contig=<ID=chrUn_gl000243,assembly=hg19,length=43341>
##contig=<ID=chrUn_gl000244,assembly=hg19,length=39929>
##contig=<ID=chrUn_gl000245,assembly=hg19,length=36651>
##contig=<ID=chrUn_gl000246,assembly=hg19,length=38154>
##contig=<ID=chrUn_gl000247,assembly=hg19,length=36422>
##contig=<ID=chrUn_gl000248,assembly=hg19,length=39786>
##contig=<ID=chrUn_gl000249,assembly=hg19,length=38502>
##reference=file:///export/home/fperez/resources/human_reference/hg19.fasta
##source=SelectVariants
##source_20180504.1=vcf-subset(r940) -c Sample_SEC-2-18-7 -e ../filtered_output.vcf
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Sample_SEC-2-18-7
chr1	955597	.	G	T	1328.44	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-6.070e-01;ClippingRankSum=0.00;DP=210;ExcessHet=3.8535;FS=5.910;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=19.83;ReadPosRankSum=-1.300e-01;SOR=1.609;set=variant	GT:AD:DP:GQ:PL	0/1:11,24:35:99:694,0,267
chr1	977330	.	T	C	13843.45	PASS	AC=2;AF=1.00;AN=2;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.33;SOR=1.236;set=variant	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2478,258,0
chr1	981931	.	A	G	22861.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=32.20;ReadPosRankSum=-1.120e+00;SOR=0.812;set=variant	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4089,360,0
chr1	982994	.	T	C	18385.45	PASS	AC=2;AF=1.00;AN=2;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.11;SOR=0.717;set=variant	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3055,279,0
chr1	987200	.	C	T	12859.45	PASS	AC=2;AF=1.00;AN=2;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.49;SOR=1.376;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1619,162,0
chr1	990280	.	C	T	13284.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-2.401e+00;ClippingRankSum=0.00;DP=547;ExcessHet=3.8535;FS=2.821;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.37;ReadPosRankSum=0.824;SOR=0.455;set=variant	GT:AD:DP:GQ:PL	0/1:39,52:91:99:1324,0,1122
chr1	1147422	.	C	T	11265.45	PASS	AC=2;AF=1.00;AN=2;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.37;SOR=2.734;set=variant	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2364,216,0
chr1	1269554	.	T	C	44598.45	PASS	AC=2;AF=1.00;AN=2;DP=1551;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.87;SOR=0.792;set=variant	GT:AD:DP:GQ:PL	1/1:0,223:223:99:6598,669,0
chr1	1647778	.	C	G	5955.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360e+00;ClippingRankSum=0.00;DP=525;ExcessHet=22.7857;FS=0.603;MLEAC=9;MLEAF=0.500;MQ=60.04;MQRankSum=0.00;QD=11.52;ReadPosRankSum=-9.200e-02;SOR=0.800;set=variant	GT:AD:DP:GQ:PL	0/1:40,30:70:99:813,0,931
chr1	1647814	.	T	C	9313.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;ClippingRankSum=0.00;DP=905;ExcessHet=22.7857;FS=1.802;MLEAC=9;MLEAF=0.500;MQ=60.04;MQRankSum=0.00;QD=10.41;ReadPosRankSum=0.213;SOR=0.821;set=variant	GT:AD:DP:GQ:PL	0/1:62,49:111:99:1219,0,1423
chr1	1647871	.	T	C	13901.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.00;DP=1449;ExcessHet=22.7857;FS=1.104;MLEAC=9;MLEAF=0.500;MQ=60.02;MQRankSum=0.00;QD=9.68;ReadPosRankSum=-1.900e-02;SOR=0.784;set=variant	GT:AD:DP:GQ:PL	0/1:93,84:177:99:1861,0,2042
chr1	1647893	.	C	CTTTCTT	18900.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.00;DP=1220;ExcessHet=22.7857;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=60.02;MQRankSum=0.00;QD=17.21;ReadPosRankSum=-2.890e-01;SOR=0.670;set=variant2	GT:AD:DP:GQ:PL	0/1:68,62:130:99:2340,0,2649
chr1	1653028	.	C	T	5341.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=2.04;ClippingRankSum=0.00;DP=225;ExcessHet=3.2736;FS=0.705;MLEAC=16;MLEAF=0.889;MQ=55.65;MQRankSum=-2.728e+00;QD=23.74;ReadPosRankSum=2.18;SOR=0.798;set=variant	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1199,114,0
chr1	1957037	.	T	C	5845.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.00;DP=643;ExcessHet=8.3924;FS=0.520;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.69;ReadPosRankSum=-2.460e-01;SOR=0.622;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:53,57:110:99:.:.:1470,0,1228
chr1	2340200	.	T	C	20417.17	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.00;DP=1149;ExcessHet=6.2839;FS=0.572;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=17.96;ReadPosRankSum=0.789;SOR=0.778;set=variant	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5365,543,0
chr1	2528133	.	T	C	597.56	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-1.150e+00;ClippingRankSum=0.00;DP=58;ExcessHet=1.0593;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=20.61;ReadPosRankSum=0.319;SOR=0.437;set=variant	GT:AD:DP:GQ:PL	1/1:0,7:7:21:243,21,0
chr1	2560818	.	CCAG	C	389.93	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.00;DP=396;ExcessHet=5.8492;FS=4.402;MLEAC=4;MLEAF=0.222;MQ=60.05;MQRankSum=0.00;QD=2.14;ReadPosRankSum=1.64;SOR=0.994;set=variant2	GT:AD:DP:GQ:PL	0/1:50,6:56:99:102,0,2043
chr1	2560882	.	G	A	5949.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-6.640e-01;ClippingRankSum=0.00;DP=314;ExcessHet=3.4788;FS=6.341;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=24.09;ReadPosRankSum=-1.460e-01;SOR=1.071;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,53:53:99:1|1:2560882_G_A:2337,160,0
chr1	2560903	.	T	G	5272.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.00;DP=245;ExcessHet=3.4788;FS=6.693;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=27.04;ReadPosRankSum=-6.800e-02;SOR=1.185;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,52:52:99:1|1:2560882_G_A:2299,156,0
chr1	3599750	.	TG	T	2013.32	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.550e-01;ClippingRankSum=0.00;DP=407;ExcessHet=3.8535;FS=1.448;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=14.18;ReadPosRankSum=0.047;SOR=0.554;set=variant2	GT:AD:DP:GQ:PL	0/1:29,27:56:99:673,0,724
chr1	5935162	.	A	T	1821.63	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-2.369e+00;ClippingRankSum=0.00;DP=70;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=26.02;ReadPosRankSum=-6.600e-01;SOR=0.732;set=variant	GT:AD:DP:GQ:PL	0/1:10,4:14:99:102,0,345
chr1	5937168	.	G	A	3544.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=1.73;ClippingRankSum=0.00;DP=161;ExcessHet=1.5127;FS=3.748;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=25.14;ReadPosRankSum=-5.400e-01;SOR=1.301;set=variant	GT:AD:DP:GQ:PL	1/1:0,25:25:75:805,75,0
chr1	6529182	.	TTCC	T	331.58	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.81;ClippingRankSum=0.00;DP=558;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=2.91;ReadPosRankSum=-3.170e-01;SOR=0.782;set=variant2	GT:AD:DP:GQ:PL	0/1:59,7:66:99:117,0,2472
chr1	6635231	.	A	G	12546.45	PASS	AC=2;AF=1.00;AN=2;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.13;SOR=0.941;set=variant	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2391,228,0
chr1	7723534	.	G	A	10362.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-02;ClippingRankSum=0.00;DP=653;ExcessHet=0.7786;FS=6.093;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=20.24;ReadPosRankSum=1.40;SOR=0.371;set=variant	GT:AD:DP:GQ:PL	0/1:60,100:160:99:2570,0,1422
chr1	7723957	.	G	A	15732.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.79;ClippingRankSum=0.00;DP=911;ExcessHet=1.8603;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=19.79;ReadPosRankSum=1.27;SOR=0.685;set=variant	GT:AD:DP:GQ:PL	0/1:76,85:161:99:2201,0,1803
chr1	7737799	.	A	G	4575.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=353;ExcessHet=1.8603;FS=1.180;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=19.98;ReadPosRankSum=0.551;SOR=0.603;set=variant	GT:AD:DP:GQ:PL	0/1:23,29:52:99:789,0,607
chr1	7797503	.	C	G	4362.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.00;DP=707;ExcessHet=3.8535;FS=1.796;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.30;ReadPosRankSum=0.912;SOR=0.762;set=variant	GT:AD:DP:GQ:PL	0/1:101,61:162:99:1463,0,2746
chr1	7870048	.	T	C	6088.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.00;DP=503;ExcessHet=6.2536;FS=0.537;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=14.39;ReadPosRankSum=1.47;SOR=0.739;set=variant	GT:AD:DP:GQ:PL	0/1:47,37:84:99:829,0,1028
chr1	7880683	.	T	G	3519.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.53;ClippingRankSum=0.00;DP=568;ExcessHet=4.8226;FS=1.337;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.96;ReadPosRankSum=0.439;SOR=0.797;set=variant	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1139,0,1135
chr1	7887248	.	G	A	12819.49	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-5.360e-01;ClippingRankSum=0.00;DP=863;ExcessHet=11.4027;FS=1.113;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=14.89;ReadPosRankSum=-5.580e-01;SOR=0.613;set=variant	GT:AD:DP:GQ:PL	0/1:68,53:121:99:1311,0,1728
chr1	7887493	.	T	C	25940.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.830e-01;ClippingRankSum=0.00;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=32.55;ReadPosRankSum=-8.310e-01;SOR=0.862;set=variant	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3438,298,0
chr1	7887605	.	G	A	20217.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-5.850e-01;ClippingRankSum=0.00;DP=1371;ExcessHet=6.2536;FS=2.506;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.54;ReadPosRankSum=-6.860e-01;SOR=0.849;set=variant	GT:AD:DP:GQ:PL	0/1:108,116:224:99:2797,0,2532
chr1	7889972	.	GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAGGATCGCCTCCCATGA	G	526.29	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.160e+00;ClippingRankSum=0.00;DP=485;ExcessHet=11.4027;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=59.17;MQRankSum=0.237;QD=10.96;ReadPosRankSum=1.07;SOR=0.588;set=variant2	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,0:8:29:.:.:29,0,390
chr1	7890117	.	T	C	4071.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.00;DP=490;ExcessHet=8.3924;FS=3.950;MLEAC=6;MLEAF=0.333;MQ=59.14;MQRankSum=0.522;QD=11.16;ReadPosRankSum=-1.840e-01;SOR=0.706;set=variant	GT:AD:DP:GQ:PL	0/1:54,51:105:99:1204,0,1212
chr1	7897133	.	A	G	3932.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.00;ClippingRankSum=0.00;DP=606;ExcessHet=4.8226;FS=2.644;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=9.93;ReadPosRankSum=-3.030e-01;SOR=0.572;set=variant	GT:AD:DP:GQ:PL	0/1:66,58:124:99:1385,0,1529
chr1	7909737	.	C	T	2635.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e+00;ClippingRankSum=0.00;DP=353;ExcessHet=9.7754;FS=0.430;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=8.93;ReadPosRankSum=-1.770e-01;SOR=0.643;set=variant	GT:AD:DP:GQ:PL	0/1:22,9:31:99:161,0,602
chr1	8928125	.	G	T	9167.15	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-2.210e-01;ClippingRankSum=0.00;DP=524;ExcessHet=1.5127;FS=1.345;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=19.63;ReadPosRankSum=-7.400e-01;SOR=0.560;set=variant	GT:AD:DP:GQ:PL	0/1:38,29:67:99:625,0,1014
chr1	9009406	.	C	T	4064.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.00;DP=665;ExcessHet=4.8226;FS=0.524;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=9.09;ReadPosRankSum=0.481;SOR=0.630;set=variant	GT:AD:DP:GQ:PL	0/1:104,46:150:99:877,0,2542
chr1	9009444	.	A	C	6241.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=2.26;ClippingRankSum=0.00;DP=697;ExcessHet=8.3924;FS=4.121;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=10.72;ReadPosRankSum=1.92;SOR=0.988;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:89,51:140:99:.:.:1210,0,2066
chr1	9017204	.	A	G	1233.11	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-4.470e-01;ClippingRankSum=0.00;DP=144;ExcessHet=6.2536;FS=1.580;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=11.31;ReadPosRankSum=-7.400e-02;SOR=0.939;set=variant	GT:AD:DP:GQ:PL	0/1:15,15:30:99:332,0,320
chr1	9307033	.	G	A	1489.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-3.100e-01;ClippingRankSum=0.00;DP=236;ExcessHet=6.2839;FS=5.452;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.46;ReadPosRankSum=0.658;SOR=1.187;set=variant	GT:AD:DP:GQ:PL	0/1:13,22:35:99:526,0,288
chr1	9307129	.	C	A	1244.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.57;ClippingRankSum=0.00;DP=334;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=16.16;ReadPosRankSum=0.492;SOR=0.749;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:28,23:51:99:0|1:9307129_C_A:832,0,1282
chr1	9307138	.	T	C	2916.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.00;DP=389;ExcessHet=6.2839;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=12.20;ReadPosRankSum=0.814;SOR=0.689;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:28,20:48:99:0|1:9307129_C_A:745,0,1284
chr1	9324213	.	C	T	1231.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=4.24;ClippingRankSum=0.00;DP=298;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.40;ReadPosRankSum=1.87;SOR=0.675;set=variant	GT:AD:DP:GQ:PL	0/1:30,25:55:99:708,0,842
chr1	9324338	.	G	A	861.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-4.990e-01;ClippingRankSum=0.00;DP=348;ExcessHet=3.0103;FS=4.721;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=12.31;ReadPosRankSum=0.500;SOR=1.148;set=variant	GT:AD:DP:GQ:PL	0/1:34,36:70:99:896,0,874
chr1	9324571	.	T	C	5132.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.43;ClippingRankSum=0.00;DP=273;ExcessHet=6.2536;FS=1.550;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.13;ReadPosRankSum=0.695;SOR=0.658;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1651,132,0
chr1	9324670	.	A	G	8059.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.00;DP=456;ExcessHet=6.2536;FS=2.783;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=19.28;ReadPosRankSum=-6.590e-01;SOR=0.948;set=variant	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2677,220,0
chr1	10318652	.	C	G	548.34	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.00;DP=294;ExcessHet=0.4012;FS=3.997;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.75;ReadPosRankSum=0.352;SOR=1.292;set=variant	GT:AD:DP:GQ:PL	0/1:28,8:36:99:149,0,759
chr1	10355834	.	C	T	2156.34	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.335e+00;ClippingRankSum=0.00;DP=396;ExcessHet=0.4012;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=19.08;ReadPosRankSum=-1.946e+00;SOR=0.722;set=variant	GT:AD:DP:GQ:PL	0/1:31,32:63:99:778,0,850
chr1	10435324	.	C	A	1055.34	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.002e+00;ClippingRankSum=0.00;DP=317;ExcessHet=0.4012;FS=0.954;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=15.75;ReadPosRankSum=1.36;SOR=0.848;set=variant	GT:AD:DP:GQ:PL	0/1:25,10:35:99:207,0,710
chr1	10460485	.	T	C	5307.34	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=3.01;ClippingRankSum=0.00;DP=723;ExcessHet=0.4012;FS=1.599;MLEAC=3;MLEAF=0.167;MQ=58.66;MQRankSum=-4.400e-01;QD=18.82;ReadPosRankSum=1.91;SOR=0.828;set=variant	GT:AD:DP:GQ:PL	0/1:90,86:176:99:2233,0,2128
chr1	10473196	.	C	T	4096.61	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.00;DP=484;ExcessHet=0.8432;FS=0.976;MLEAC=4;MLEAF=0.222;MQ=59.62;MQRankSum=-9.910e-01;QD=16.13;ReadPosRankSum=-7.220e-01;SOR=0.620;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:54,53:107:99:.:.:1230,0,1324
chr1	10479678	.	G	A	2023.34	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-3.360e-01;ClippingRankSum=0.00;DP=415;ExcessHet=0.4012;FS=1.484;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=16.19;ReadPosRankSum=-7.570e-01;SOR=0.542;set=variant	GT:AD:DP:GQ:PL	0/1:45,42:87:99:970,0,1094
chr1	10596341	.	C	T	4901.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810e+00;ClippingRankSum=0.00;DP=379;ExcessHet=3.4788;FS=1.578;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=16.18;ReadPosRankSum=-9.020e-01;SOR=0.589;set=variant	GT:AD:DP:GQ:PL	0/1:35,22:57:99:526,0,1000
chr1	11087524	.	G	A	21897.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=2.70;ClippingRankSum=0.00;DP=834;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.38;ReadPosRankSum=1.16;SOR=0.738;set=variant	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3991,390,0
chr1	11090916	.	C	A	16346.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-1.310e-01;ClippingRankSum=0.00;DP=692;ExcessHet=3.2736;FS=1.817;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.47;ReadPosRankSum=0.663;SOR=0.520;set=variant	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2638,276,0
chr1	11854457	.	G	A	11748.45	PASS	AC=2;AF=1.00;AN=2;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.15;SOR=0.813;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,60:60:99:.:.:1737,180,0
chr1	11856378	.	G	A	10625.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-1.170e+00;ClippingRankSum=0.00;DP=655;ExcessHet=2.5097;FS=1.201;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=17.36;ReadPosRankSum=1.41;SOR=0.673;set=variant	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2934,309,0
chr1	12009955	.	C	T	3368.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.00;DP=375;ExcessHet=1.5127;FS=5.262;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=16.27;ReadPosRankSum=0.081;SOR=0.431;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,31:53:99:.:.:753,0,471
chr1	12024235	.	C	T	5117.13	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-8.990e-01;ClippingRankSum=0.00;DP=581;ExcessHet=0.1296;FS=0.547;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=19.09;ReadPosRankSum=2.73;SOR=0.644;set=variant	GT:AD:DP:GQ:PL	0/1:56,57:113:99:1158,0,1204
chr1	12082926	.	A	G	5406.78	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.39;ClippingRankSum=0.00;DP=520;ExcessHet=0.3904;FS=1.049;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=19.04;ReadPosRankSum=1.16;SOR=0.791;set=variant	GT:AD:DP:GQ:PL	0/1:44,38:82:99:862,0,927
chr1	14143003	.	A	G	10603.61	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=1.54;ClippingRankSum=0.00;DP=551;ExcessHet=0.8432;FS=0.660;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=20.91;ReadPosRankSum=3.37;SOR=0.761;set=variant	GT:AD:DP:GQ:PL	0/1:56,27:83:99:569,0,1334
chr1	15832543	.	T	C	3590.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-9.620e-01;ClippingRankSum=0.00;DP=621;ExcessHet=4.8226;FS=0.522;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=8.95;ReadPosRankSum=0.088;SOR=0.671;set=variant	GT:AD:DP:GQ:PL	0/1:68,61:129:99:1270,0,1516
chr1	15844615	.	A	G	4015.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.708e+00;ClippingRankSum=0.00;DP=474;ExcessHet=4.8226;FS=6.230;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=14.55;ReadPosRankSum=0.255;SOR=0.393;set=variant	GT:AD:DP:GQ:PL	0/1:36,50:86:99:1415,0,962
chr1	15850553	.	C	CGGGGGCG	1561.59	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.43;ClippingRankSum=0.00;DP=229;ExcessHet=4.8226;FS=13.987;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=16.61;ReadPosRankSum=-9.090e-01;SOR=2.278;set=variant2	GT:AD:DP:GQ:PL	0/1:17,8:25:99:375,0,1108
chr1	15850613	.	G	A	3867.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-2.025e+00;ClippingRankSum=0.00;DP=493;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=0.221;SOR=0.702;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:47,42:89:99:.:.:1028,0,1281
chr1	16096893	.	C	T	4710.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-1.960e+00;ClippingRankSum=0.00;DP=549;ExcessHet=8.3924;FS=2.737;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.01;ReadPosRankSum=0.939;SOR=0.536;set=variant	GT:AD:DP:GQ:PL	0/1:26,37:63:99:996,0,785
chr1	16096934	.	C	T	19974.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-1.361e+00;ClippingRankSum=0.00;DP=1020;ExcessHet=4.8226;FS=2.087;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=19.99;ReadPosRankSum=-1.300e-01;SOR=0.845;set=variant	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3916,384,0
chr1	16344466	.	C	T	3064.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=2.42;ClippingRankSum=0.00;DP=496;ExcessHet=4.8226;FS=4.424;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-4.890e-01;SOR=0.432;set=variant	GT:AD:DP:GQ:PL	0/1:40,46:86:99:1072,0,977
chr1	16354590	.	A	T	2137.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.11;ClippingRankSum=0.00;DP=371;ExcessHet=6.2839;FS=0.492;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=9.71;ReadPosRankSum=0.397;SOR=0.740;set=variant	GT:AD:DP:GQ:PL	0/1:31,31:62:99:637,0,628
chr1	16358932	.	T	C	10397.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-3.300e-02;ClippingRankSum=0.00;DP=679;ExcessHet=3.9991;FS=0.553;MLEAC=11;MLEAF=0.611;MQ=59.95;MQRankSum=0.00;QD=16.85;ReadPosRankSum=1.76;SOR=0.751;set=variant	GT:AD:DP:GQ:PL	0/1:63,36:99:99:747,0,1555
chr1	16371067	.	G	T	8224.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-4.270e-01;ClippingRankSum=0.00;DP=410;ExcessHet=4.8226;FS=0.957;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=21.09;ReadPosRankSum=-5.150e-01;SOR=0.783;set=variant	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1615,168,0
chr1	16373124	.	A	G	10111.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.34;ClippingRankSum=0.00;DP=430;ExcessHet=3.2736;FS=2.532;MLEAC=16;MLEAF=0.889;MQ=59.88;MQRankSum=0.871;QD=23.79;ReadPosRankSum=-8.930e-01;SOR=0.943;set=variant	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2293,228,0
chr1	16374533	.	G	C	622.74	PASS	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=8;MLEAF=1.00;MQ=44.31;QD=34.60;SOR=1.863;set=variant	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr1	16374994	.	C	T	3898.63	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.00;DP=143;ExcessHet=3.2736;FS=2.061;MLEAC=16;MLEAF=0.889;MQ=46.85;MQRankSum=-5.840e-01;QD=27.26;ReadPosRankSum=0.565;SOR=0.871;set=variant	GT:AD:DP:GQ:PL	1/1:0,25:25:75:825,75,0
chr1	16375063	.	C	G	5802.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.000e-01;ClippingRankSum=0.00;DP=140;ExcessHet=3.0103;FS=1.419;MLEAC=17;MLEAF=0.944;MQ=54.47;MQRankSum=0.380;QD=34.24;ReadPosRankSum=0.010;SOR=1.064;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,26:26:78:1|1:16375063_C_G:1170,78,0
chr1	16375064	.	A	C	5802.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.000e-01;ClippingRankSum=0.00;DP=140;ExcessHet=3.0103;FS=1.419;MLEAC=17;MLEAF=0.944;MQ=54.47;MQRankSum=0.380;QD=30.63;ReadPosRankSum=0.010;SOR=1.064;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,26:26:78:1|1:16375063_C_G:1170,78,0
chr1	16376191	.	C	T	1151.62	my_filter	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=12;MLEAF=1.00;MQ=38.97;QD=32.90;SOR=1.675;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,8:8:24:271,24,0
chr1	16376319	.	T	C	5893.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.00;DP=228;ExcessHet=3.0103;FS=1.065;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.04;ReadPosRankSum=0.892;SOR=0.602;set=variant	GT:AD:DP:GQ:PL	1/1:0,27:27:81:868,81,0
chr1	16380196	.	T	C	9217.45	PASS	AC=2;AF=1.00;AN=2;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=55.66;QD=28.27;SOR=0.730;set=variant	GT:AD:DP:GQ:PL	1/1:0,33:33:99:912,99,0
chr1	16380243	.	A	G	3610.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.00;DP=178;ExcessHet=0.7786;FS=7.835;MLEAC=9;MLEAF=0.500;MQ=50.59;MQRankSum=-3.947e+00;QD=29.60;ReadPosRankSum=-1.470e-01;SOR=0.415;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,6:17:99:0|1:16380243_A_G:219,0,444
chr1	16380252	.	C	T	3592.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.00;DP=168;ExcessHet=0.7786;FS=8.029;MLEAC=9;MLEAF=0.500;MQ=49.94;MQRankSum=-3.952e+00;QD=30.71;ReadPosRankSum=0.069;SOR=0.369;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,7:18:99:0|1:16380243_A_G:253,0,441
chr1	16451767	.	G	A	11246.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.00;DP=739;ExcessHet=3.9991;FS=0.544;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=16.07;ReadPosRankSum=2.35;SOR=0.621;set=variant	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1044,0,1304
chr1	16464489	.	C	T	1603.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.47;ClippingRankSum=0.00;DP=420;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.48;ReadPosRankSum=0.241;SOR=0.714;set=variant	GT:AD:DP:GQ:PL	0/1:59,38:97:99:816,0,1340
chr1	16464673	.	G	A	1193.87	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-3.331e+00;ClippingRankSum=0.00;DP=90;ExcessHet=1.2191;FS=1.501;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=20.24;ReadPosRankSum=-2.420e-01;SOR=1.246;set=variant	GT:AD:DP:GQ:PL	0/1:10,7:17:99:201,0,360
chr1	16475123	.	C	T	851.34	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-2.189e+00;ClippingRankSum=0.00;DP=78;ExcessHet=2.5097;FS=1.931;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=25.04;ReadPosRankSum=-6.670e-01;SOR=1.609;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,7:15:99:0|1:16475123_C_T:258,0,592
chr1	16475126	.	C	T	851.26	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.579e+00;ClippingRankSum=0.00;DP=78;ExcessHet=2.5097;FS=4.847;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=25.80;ReadPosRankSum=-5.660e-01;SOR=2.093;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,6:14:99:0|1:16475123_C_T:258,0,592
chr1	16731510	.	C	G	3999.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.00;DP=513;ExcessHet=3.9991;FS=2.144;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=10.36;ReadPosRankSum=1.13;SOR=0.790;set=variant	GT:AD:DP:GQ:PL	0/1:42,30:72:99:719,0,975
chr1	16736546	.	C	T	5713.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-1.083e+00;ClippingRankSum=0.00;DP=428;ExcessHet=1.8603;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.47;ReadPosRankSum=-1.140e-01;SOR=0.688;set=variant	GT:AD:DP:GQ:PL	0/1:46,19:65:99:344,0,1304
chr1	16892246	.	C	G	18.01	my_filter	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.920e-01;ClippingRankSum=0.00;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=48.75;MQRankSum=0.00;QD=1.39;ReadPosRankSum=0.944;SOR=0.446;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:10,3:13:52:52,0,277
chr1	16895634	.	T	G	981.48	PASS	AC=1;AF=0.625;AN=2;BaseQRankSum=1.35;ClippingRankSum=0.00;DP=85;ExcessHet=5.5328;FS=4.404;MLEAC=11;MLEAF=0.688;MQ=41.30;MQRankSum=-2.977e+00;QD=12.75;ReadPosRankSum=-1.200e-01;SOR=0.616;set=variant	GT:AD:DP:GQ:PL	0/1:7,6:13:99:149,0,184
chr1	16902823	.	G	C	138.38	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.00;DP=160;ExcessHet=3.8535;FS=2.608;MLEAC=3;MLEAF=0.167;MQ=41.40;MQRankSum=-1.561e+00;QD=2.04;ReadPosRankSum=1.21;SOR=1.107;set=variant	GT:AD:DP:GQ:PL	0/1:20,5:25:82:82,0,625
chr1	16902884	.	T	C	724.19	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.79;ClippingRankSum=0.00;DP=118;ExcessHet=1.9114;FS=7.425;MLEAC=5;MLEAF=0.278;MQ=44.63;MQRankSum=-5.710e-01;QD=12.07;ReadPosRankSum=1.40;SOR=1.802;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:21,6:27:99:.:.:133,0,771
chr1	16902894	.	A	G	2232.03	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=1.38;ClippingRankSum=0.00;DP=107;ExcessHet=8.3924;FS=7.325;MLEAC=12;MLEAF=0.667;MQ=42.86;MQRankSum=-2.191e+00;QD=21.06;ReadPosRankSum=-4.890e-01;SOR=1.348;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,14:25:99:.:.:416,0,284
chr1	16907328	.	G	T	11394.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600e-01;ClippingRankSum=0.00;DP=687;ExcessHet=22.7857;FS=1.225;MLEAC=9;MLEAF=0.500;MQ=44.58;MQRankSum=-3.048e+00;QD=16.83;ReadPosRankSum=-2.100e-01;SOR=0.583;set=variant	GT:AD:DP:GQ:PL	0/1:30,95:125:99:2396,0,537
chr1	16909052	.	C	T	167.70	my_filter	AC=2;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;ClippingRankSum=0.00;DP=16;ExcessHet=1.5490;FS=0.000;MLEAC=4;MLEAF=0.667;MQ=31.81;MQRankSum=1.15;QD=20.96;ReadPosRankSum=1.15;SOR=0.595;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,4:4:12:122,12,0
chr1	16915434	.	T	C	45.57	my_filter	AC=1;AF=0.125;AN=2;BaseQRankSum=1.65;ClippingRankSum=0.00;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.125;MQ=20.95;MQRankSum=-1.260e-01;QD=9.11;ReadPosRankSum=0.674;SOR=1.022;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:2,3:5:43:73,0,43
chr1	16918424	.	G	C	241.64	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-5.840e-01;ClippingRankSum=0.00;DP=133;ExcessHet=4.5998;FS=2.816;MLEAC=3;MLEAF=0.167;MQ=53.95;MQRankSum=-3.440e+00;QD=5.62;ReadPosRankSum=0.854;SOR=1.236;set=variant	GT:AD:DP:GQ:PL	0/1:7,6:13:99:142,0,214
chr1	16918454	.	G	A	68.98	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-6.100e-02;ClippingRankSum=0.00;DP=114;ExcessHet=3.2451;FS=3.090;MLEAC=1;MLEAF=0.056;MQ=52.68;MQRankSum=-2.029e+00;QD=6.27;ReadPosRankSum=-2.300e-02;SOR=0.889;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,3:11:99:0|1:16918454_G_A:102,0,366
chr1	16918457	.	G	C	69.21	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=1.72;ClippingRankSum=0.00;DP=113;ExcessHet=3.2451;FS=3.090;MLEAC=1;MLEAF=0.056;MQ=52.68;MQRankSum=-2.029e+00;QD=6.29;ReadPosRankSum=0.015;SOR=0.889;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,3:11:99:0|1:16918454_G_A:102,0,366
chr1	16918465	.	A	G	72.29	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=2.74;ClippingRankSum=0.00;DP=111;ExcessHet=3.8535;FS=3.090;MLEAC=1;MLEAF=0.056;MQ=52.68;MQRankSum=-2.029e+00;QD=6.57;ReadPosRankSum=-1.200e+00;SOR=0.889;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,3:11:99:0|1:16918454_G_A:102,0,366
chr1	16918502	.	A	G	1267.40	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.52;ClippingRankSum=0.00;DP=57;ExcessHet=6.2536;FS=8.018;MLEAC=11;MLEAF=0.611;MQ=55.83;MQRankSum=-4.310e-01;QD=22.63;ReadPosRankSum=0.084;SOR=2.518;set=variant	GT:AD:DP:GQ:PL	0/1:2,3:5:62:91,0,62
chr1	17312743	.	C	T	8308.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-7.270e-01;ClippingRankSum=0.00;DP=521;ExcessHet=0.2709;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=19.97;ReadPosRankSum=-2.800e-02;SOR=0.745;set=variant	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2316,252,0
chr1	17313343	.	G	A	10680.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.00;DP=615;ExcessHet=0.9154;FS=0.628;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.27;ReadPosRankSum=0.982;SOR=0.808;set=variant	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2884,300,0
chr1	17313654	.	C	T	13394.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.00;DP=752;ExcessHet=0.2709;FS=2.334;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.36;ReadPosRankSum=-8.820e-01;SOR=0.529;set=variant	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3494,372,0
chr1	17314942	.	G	A	6814.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.00;DP=455;ExcessHet=0.2709;FS=1.112;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.77;ReadPosRankSum=-9.830e-01;SOR=0.602;set=variant	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2113,231,0
chr1	17319011	.	G	A	15947.43	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=1.29;ClippingRankSum=0.00;DP=823;ExcessHet=0.0693;FS=0.991;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=26.23;ReadPosRankSum=2.46;SOR=0.542;set=variant	GT:AD:DP:GQ:PL	1/1:2,124:126:99:3741,329,0
chr1	17380497	.	G	T	5511.45	PASS	AC=2;AF=1.00;AN=2;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.12;SOR=0.966;set=variant	GT:AD:DP:GQ:PL	1/1:0,13:13:39:413,39,0
chr1	19027239	.	A	G	12123.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.00;DP=901;ExcessHet=3.4788;FS=0.534;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.88;ReadPosRankSum=0.927;SOR=0.780;set=variant	GT:AD:DP:GQ:PL	0/1:70,73:143:99:1736,0,1650
chr1	19166243	.	G	A	334.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.00;DP=245;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.81;ReadPosRankSum=1.19;SOR=0.384;set=variant	GT:AD:DP:GQ:PL	0/1:22,16:38:99:369,0,570
chr1	19166294	.	G	A	4293.14	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.63;ClippingRankSum=0.00;DP=394;ExcessHet=6.2536;FS=1.436;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.37;ReadPosRankSum=0.843;SOR=0.812;set=variant	GT:AD:DP:GQ:PL	0/1:27,23:50:99:634,0,776
chr1	19166893	.	C	T	488.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-7.430e-01;ClippingRankSum=0.00;DP=208;ExcessHet=3.0103;FS=4.442;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=12.22;ReadPosRankSum=2.20;SOR=1.247;set=variant	GT:AD:DP:GQ:PL	0/1:21,19:40:99:523,0,602
chr1	19186129	.	G	C	8358.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.00;DP=306;ExcessHet=3.8535;FS=2.278;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=27.40;ReadPosRankSum=0.541;SOR=0.516;set=variant	GT:AD:DP:GQ:PL	0/1:20,30:50:99:850,0,551
chr1	19201956	.	A	G	6218.78	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=1.25;ClippingRankSum=0.00;DP=325;ExcessHet=0.3904;FS=2.355;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=25.28;ReadPosRankSum=-5.570e-01;SOR=0.924;set=variant	GT:AD:DP:GQ:PL	0/1:15,22:37:99:597,0,333
chr1	19202917	.	T	C	10070.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.00;DP=518;ExcessHet=1.8603;FS=3.218;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=22.78;ReadPosRankSum=0.793;SOR=0.617;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:48,43:91:99:0|1:19202917_T_C:1649,0,2387
chr1	19202926	.	T	C	9984.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.00;DP=531;ExcessHet=1.8603;FS=1.108;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.94;ReadPosRankSum=1.66;SOR=0.590;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:50,43:93:99:0|1:19202917_T_C:1625,0,2391
chr1	19609254	.	T	C	9638.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=2.22;ClippingRankSum=0.00;DP=371;ExcessHet=3.2736;FS=2.961;MLEAC=16;MLEAF=0.889;MQ=55.05;MQRankSum=-1.892e+00;QD=25.98;ReadPosRankSum=1.06;SOR=0.763;set=variant	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1994,198,0
chr1	19611241	.	T	C	13241.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.00;DP=583;ExcessHet=3.2736;FS=0.698;MLEAC=16;MLEAF=0.889;MQ=59.45;MQRankSum=0.00;QD=22.87;ReadPosRankSum=0.433;SOR=0.744;set=variant	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2466,243,0
chr1	19612477	.	C	T	8764.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.780e-01;ClippingRankSum=0.00;DP=575;ExcessHet=0.9154;FS=1.254;MLEAC=11;MLEAF=0.611;MQ=58.41;MQRankSum=-2.420e-01;QD=18.69;ReadPosRankSum=-2.023e+00;SOR=0.616;set=variant	GT:AD:DP:GQ:PL	0/1:65,42:107:99:911,0,1632
chr1	20411332	.	C	T	2293.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-8.280e-01;ClippingRankSum=0.00;DP=421;ExcessHet=0.8432;FS=1.318;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=15.19;ReadPosRankSum=1.40;SOR=0.747;set=variant	GT:AD:DP:GQ:PL	1/1:2,48:50:99:1313,101,0
chr1	20442054	.	T	C	9490.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-7.780e-01;ClippingRankSum=0.00;DP=602;ExcessHet=2.5097;FS=2.678;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=17.19;ReadPosRankSum=0.230;SOR=0.897;set=variant	GT:AD:DP:GQ:PL	0/1:54,53:107:99:1093,0,1180
chr1	20915701	.	A	C	6526.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.28;ClippingRankSum=0.00;DP=618;ExcessHet=6.2536;FS=1.745;MLEAC=10;MLEAF=0.556;MQ=60.11;MQRankSum=0.00;QD=11.41;ReadPosRankSum=-4.820e-01;SOR=0.619;set=variant	GT:AD:DP:GQ:PL	0/1:50,37:87:99:856,0,1146
chr1	20945055	.	C	T	2595.20	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-1.585e+00;ClippingRankSum=0.00;DP=150;ExcessHet=1.8603;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.10;ReadPosRankSum=1.08;SOR=0.621;set=variant	GT:AD:DP:GQ:PL	1/1:0,25:25:75:803,75,0
chr1	20964328	.	A	G	2384.84	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-3.580e-01;ClippingRankSum=0.00;DP=132;ExcessHet=8.3924;FS=5.443;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=18.07;ReadPosRankSum=0.842;SOR=1.250;set=variant	GT:AD:DP:GQ:PL	0/1:17,13:30:99:327,0,386
chr1	20977000	.	A	C	7644.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=756;ExcessHet=1.5127;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.63;ReadPosRankSum=0.223;SOR=0.726;set=variant	GT:AD:DP:GQ:PL	0/1:89,89:178:99:2154,0,2247
chr1	20982631	.	G	A	8487.49	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.780e-01;ClippingRankSum=0.00;DP=635;ExcessHet=11.4027;FS=0.523;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=13.58;ReadPosRankSum=-7.400e-02;SOR=0.656;set=variant	GT:AD:DP:GQ:PL	0/1:51,32:83:99:685,0,1177
chr1	20987873	.	G	C	20599.45	PASS	AC=2;AF=1.00;AN=2;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=34.50;SOR=1.955;set=variant	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3251,291,0
chr1	20992819	.	G	C	7335.49	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=1.30;ClippingRankSum=0.00;DP=497;ExcessHet=11.4027;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=15.12;ReadPosRankSum=-9.100e-02;SOR=0.669;set=variant	GT:AD:DP:GQ:PL	0/1:33,53:86:99:1271,0,716
chr1	21031042	.	T	C	2012.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.69;ClippingRankSum=0.00;DP=420;ExcessHet=3.2736;FS=1.200;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.91;ReadPosRankSum=0.254;SOR=0.814;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:55,45:100:99:.:.:1073,0,1262
chr1	21042094	.	G	A	6654.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.00;DP=627;ExcessHet=0.9154;FS=2.541;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.95;ReadPosRankSum=-9.050e-01;SOR=0.878;set=variant	GT:AD:DP:GQ:PL	0/1:96,54:150:99:1145,0,2389
chr1	21044161	.	A	G	9751.78	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=2.94;ClippingRankSum=0.00;DP=450;ExcessHet=0.3904;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=25.66;ReadPosRankSum=0.858;SOR=0.683;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2151,204,0
chr1	21889635	.	T	C	18633.45	PASS	AC=2;AF=1.00;AN=2;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.76;SOR=0.979;set=variant	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3849,372,0
chr1	21894735	.	T	C	424.22	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.82;ClippingRankSum=0.00;DP=99;ExcessHet=3.7566;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=15.71;ReadPosRankSum=0.692;SOR=0.963;set=variant	GT:AD:DP:GQ:PL	0/1:6,11:17:99:326,0,150
chr1	21900151	.	T	C	213.62	my_filter	AC=1;AF=0.111;AN=2;BaseQRankSum=-7.120e-01;ClippingRankSum=0.00;DP=405;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=1.84;ReadPosRankSum=0.091;SOR=0.674;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:42,8:50:99:203,0,2246
chr1	21900171	.	A	G	107.91	my_filter	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.210e-01;ClippingRankSum=0.00;DP=426;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.056;MQ=90.25;MQRankSum=0.00;QD=1.77;ReadPosRankSum=0.368;SOR=1.042;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:50,11:61:99:142,0,1312
chr1	22149935	.	T	C	15396.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.053e+00;ClippingRankSum=0.00;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.30;ReadPosRankSum=2.36;SOR=0.650;set=variant	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1982,192,0
chr1	22191454	.	G	A	9266.61	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-4.400e-02;ClippingRankSum=0.00;DP=467;ExcessHet=0.8432;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=22.12;ReadPosRankSum=1.06;SOR=0.720;set=variant	GT:AD:DP:GQ:PL	0/1:49,33:82:99:700,0,1182
chr1	22199245	.	C	T	2057.81	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-6.470e-01;ClippingRankSum=0.00;DP=236;ExcessHet=2.5097;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.91;ReadPosRankSum=1.11;SOR=0.681;set=variant	GT:AD:DP:GQ:PL	0/1:21,18:39:99:442,0,517
chr1	22206649	.	T	C	15918.45	PASS	AC=2;AF=1.00;AN=2;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.61;SOR=1.049;set=variant	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2961,279,0
chr1	22206942	.	G	A	18373.45	PASS	AC=2;AF=1.00;AN=2;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.55;SOR=0.764;set=variant	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3565,381,0
chr1	22207235	.	T	C	19888.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.00;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=28.21;ReadPosRankSum=-5.120e-01;SOR=0.696;set=variant	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3069,312,0
chr1	22214127	.	A	G	10018.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=2.78;ClippingRankSum=0.00;DP=604;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=18.22;ReadPosRankSum=0.882;SOR=0.684;set=variant	GT:AD:DP:GQ:PL	0/1:70,52:122:99:1297,0,1748
chr1	22216574	.	C	A	1639.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.00;DP=293;ExcessHet=2.5097;FS=1.989;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=10.51;ReadPosRankSum=1.17;SOR=0.820;set=variant	GT:AD:DP:GQ:PL	0/1:28,6:34:68:68,0,712
chr1	22216604	.	C	G	1330.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=285;ExcessHet=2.5097;FS=0.621;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=9.12;ReadPosRankSum=-2.550e-01;SOR=0.629;set=variant	GT:AD:DP:GQ:PL	0/1:35,5:40:26:26,0,893
chr1	22217108	.	G	A	11435.45	PASS	AC=2;AF=1.00;AN=2;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.70;SOR=0.796;set=variant	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2165,222,0
chr1	22832743	.	A	T	1870.88	PASS	AC=2;AF=0.778;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;QD=33.41;SOR=8.086;set=variant	GT:AD:DP:GQ:PL	1/1:0,8:8:24:277,24,0
chr1	22835677	.	A	G	4781.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.65;ClippingRankSum=0.00;DP=190;ExcessHet=3.2736;FS=4.996;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.43;ReadPosRankSum=0.993;SOR=1.046;set=variant	GT:AD:DP:GQ:PL	1/1:0,27:27:81:810,81,0
chr1	22837849	.	C	T	9583.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.00;DP=421;ExcessHet=3.8535;FS=1.569;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.60;ReadPosRankSum=-2.660e-01;SOR=0.797;set=variant	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1814,180,0
chr1	22846709	.	G	A	6449.45	PASS	AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.41;SOR=0.936;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1063,108,0
chr1	22965438	.	A	G	15416.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=4.59;ClippingRankSum=0.00;DP=739;ExcessHet=2.5097;FS=0.622;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=22.47;ReadPosRankSum=0.453;SOR=0.776;set=variant	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3998,346,0
chr1	22970642	.	C	T	3328.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.888;ClippingRankSum=0.00;DP=400;ExcessHet=2.5097;FS=1.516;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.90;ReadPosRankSum=1.65;SOR=0.816;set=variant	GT:AD:DP:GQ:PL	0/1:37,26:63:99:648,0,943
chr1	23219493	.	T	C	4689.45	PASS	AC=2;AF=1.00;AN=2;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.57;SOR=1.693;set=variant	GT:AD:DP:GQ:PL	1/1:0,17:17:51:595,51,0
chr1	23885498	.	T	C	18133.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=1.17;ClippingRankSum=0.00;DP=964;ExcessHet=2.5097;FS=0.602;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.56;ReadPosRankSum=0.979;SOR=0.771;set=variant	GT:AD:DP:GQ:PL	0/1:83,70:153:99:1806,0,1921
chr1	24134721	.	T	C	38442.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.65;ClippingRankSum=0.00;DP=1384;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.20;ReadPosRankSum=0.126;SOR=0.701;set=variant	GT:AD:DP:GQ:PL	1/1:0,198:198:99:6030,594,0
chr1	24180962	.	T	C	1562.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.00;DP=423;ExcessHet=3.2736;FS=2.716;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.41;ReadPosRankSum=0.014;SOR=0.921;set=variant	GT:AD:DP:GQ:PL	0/1:38,43:81:99:919,0,868
chr1	24194770	.	C	G	712.68	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.00;DP=126;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=17.82;ReadPosRankSum=0.068;SOR=0.902;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,16:28:99:.:.:545,0,396
chr1	24201094	.	G	C	1707.77	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-5.420e-01;ClippingRankSum=0.00;DP=68;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=25.49;ReadPosRankSum=0.00;SOR=0.721;set=variant	GT:AD:DP:GQ:PL	0/1:6,6:12:99:137,0,161
chr1	24201109	.	C	T	1844.61	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-1.645e+00;ClippingRankSum=0.00;DP=78;ExcessHet=3.8535;FS=1.214;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.65;ReadPosRankSum=-1.060e+00;SOR=0.437;set=variant	GT:AD:DP:GQ:PL	0/1:6,8:14:99:179,0,153
chr1	24201262	.	A	G	2581.41	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.00;DP=112;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.13;ReadPosRankSum=0.784;SOR=0.735;set=variant	GT:AD:DP:GQ:PL	0/1:9,6:15:99:162,0,282
chr1	24201357	.	A	G	2402.16	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=1.95;ClippingRankSum=0.00;DP=96;ExcessHet=1.3263;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=28.26;ReadPosRankSum=-2.820e-01;SOR=0.747;set=variant	GT:AD:DP:GQ:PL	0/1:12,7:19:99:195,0,324
chr1	24201448	.	C	T	2632.55	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-2.450e+00;ClippingRankSum=0.00;DP=119;ExcessHet=3.8535;FS=0.828;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.31;ReadPosRankSum=0.250;SOR=0.594;set=variant	GT:AD:DP:GQ:PL	0/1:15,17:32:99:495,0,464
chr1	24201643	.	G	A	2939.39	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-1.082e+00;ClippingRankSum=0.00;DP=128;ExcessHet=3.8535;FS=0.870;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.14;ReadPosRankSum=-4.610e-01;SOR=0.555;set=variant	GT:AD:DP:GQ:PL	0/1:10,13:23:99:337,0,335
chr1	24201919	.	T	C	5771.38	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=1.46;ClippingRankSum=0.00;DP=172;ExcessHet=3.8535;FS=2.403;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=33.95;ReadPosRankSum=-2.330e-01;SOR=0.489;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:19,16:35:99:0|1:24201919_T_C:615,0,1039
chr1	24201920	.	T	C	5771.38	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-1.540e-01;ClippingRankSum=0.00;DP=172;ExcessHet=3.8535;FS=2.403;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=33.95;ReadPosRankSum=-5.400e-02;SOR=0.489;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:19,16:35:99:0|1:24201919_T_C:615,0,1039
chr1	25291010	.	A	T	8890.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-3.100e-02;ClippingRankSum=0.00;DP=491;ExcessHet=4.8226;FS=0.599;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=19.00;ReadPosRankSum=0.330;SOR=0.729;set=variant	GT:AD:DP:GQ:PL	0/1:38,42:80:99:915,0,803
chr1	25717365	.	C	G	2375.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.00;DP=405;ExcessHet=8.3924;FS=2.073;MLEAC=6;MLEAF=0.333;MQ=58.67;MQRankSum=1.48;QD=8.64;ReadPosRankSum=0.122;SOR=0.557;set=variant	GT:AD:DP:GQ:PL	0/1:49,23:72:99:486,0,1245
chr1	25747230	.	G	C	948.01	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=4.03;ClippingRankSum=0.00;DP=342;ExcessHet=0.0693;FS=14.789;MLEAC=7;MLEAF=0.389;MQ=43.89;MQRankSum=-4.320e+00;QD=9.12;ReadPosRankSum=0.828;SOR=2.017;set=variant	GT:AD:DP:GQ:PL	0/1:69,7:76:38:38,0,1666
chr1	25889632	.	T	C	2048.10	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=1.04;ClippingRankSum=0.00;DP=213;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=0.014;SOR=0.644;set=variant	GT:AD:DP:GQ:PL	1/1:0,27:27:81:873,81,0
chr1	25890189	.	A	G	4880.65	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;ClippingRankSum=0.00;DP=477;ExcessHet=9.7754;FS=0.519;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=11.17;ReadPosRankSum=0.702;SOR=0.647;set=variant	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1717,189,0
chr1	26131654	.	G	A	7248.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.00;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=25.89;ReadPosRankSum=-1.120e-01;SOR=0.783;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1668,171,0
chr1	26138262	.	T	C	11312.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=2.29;ClippingRankSum=0.00;DP=432;ExcessHet=3.0103;FS=0.991;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.31;ReadPosRankSum=7.000e-03;SOR=0.564;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2105,204,0
chr1	26140573	.	C	A	16263.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-1.990e-01;ClippingRankSum=0.00;DP=648;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.77;ReadPosRankSum=0.979;SOR=0.620;set=variant	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2523,255,0
chr1	26368261	.	G	A	868.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-7.600e-02;ClippingRankSum=0.00;DP=428;ExcessHet=3.2736;FS=1.525;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=7.30;ReadPosRankSum=-1.010e+00;SOR=0.540;set=variant	GT:AD:DP:GQ:PL	0/1:44,28:72:99:588,0,1075
chr1	26504036	.	G	A	1553.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-6.840e-01;ClippingRankSum=0.00;DP=446;ExcessHet=3.2736;FS=2.006;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.02;ReadPosRankSum=0.731;SOR=0.892;set=variant	GT:AD:DP:GQ:PL	0/1:49,35:84:99:701,0,1164
chr1	26517267	.	A	G	513.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.00;DP=244;ExcessHet=3.2736;FS=1.003;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.42;ReadPosRankSum=0.101;SOR=0.478;set=variant	GT:AD:DP:GQ:PL	0/1:22,16:38:99:309,0,525
chr1	26517773	.	T	C	974.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.36;ClippingRankSum=0.00;DP=223;ExcessHet=3.2736;FS=1.143;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=21.19;ReadPosRankSum=1.11;SOR=0.494;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:7,16:23:99:0|1:26517773_T_C:613,0,321
chr1	26517794	.	A	G	1414.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.48;ClippingRankSum=0.00;DP=313;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=16.26;ReadPosRankSum=0.173;SOR=0.614;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:21,28:49:99:0|1:26517773_T_C:877,0,546
chr1	26517891	.	C	T	1146.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.67;ClippingRankSum=0.00;DP=297;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=12.74;ReadPosRankSum=2.31;SOR=0.675;set=variant	GT:AD:DP:GQ:PL	0/1:13,27:40:99:694,0,210
chr1	26524854	.	C	T	279.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=286;ExcessHet=3.2736;FS=1.086;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=4.51;ReadPosRankSum=-3.020e-01;SOR=0.856;set=variant	GT:AD:DP:GQ:PL	0/1:22,8:30:99:147,0,685
chr1	26526439	.	A	G	329.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.00;DP=275;ExcessHet=3.2736;FS=0.982;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=4.78;ReadPosRankSum=1.62;SOR=0.551;set=variant	GT:AD:DP:GQ:PL	0/1:25,10:35:99:163,0,630
chr1	27023244	.	T	C	24.44	my_filter	AC=1;AF=0.111;AN=2;BaseQRankSum=-2.429e+00;ClippingRankSum=0.00;DP=164;ExcessHet=6.2249;FS=7.639;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=0.53;ReadPosRankSum=1.08;SOR=2.799;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:29,6:35:31:31,0,855
chr1	29138975	.	G	T	11962.45	PASS	AC=2;AF=1.00;AN=2;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.52;SOR=1.616;set=variant	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2160,213,0
chr1	29189597	.	C	T	4187.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-9.030e-01;ClippingRankSum=0.00;DP=183;ExcessHet=8.3924;FS=2.250;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=23.14;ReadPosRankSum=2.11;SOR=0.930;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,20:32:99:0|1:29189597_C_T:804,0,595
chr1	29189601	.	G	A	1410.37	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.00;DP=202;ExcessHet=3.8535;FS=1.014;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=21.05;ReadPosRankSum=1.49;SOR=0.521;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,20:32:99:0|1:29189597_C_T:804,0,595
chr1	31346057	.	A	G	2184.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.09;ClippingRankSum=0.00;DP=342;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.20;ReadPosRankSum=0.085;SOR=0.690;set=variant	GT:AD:DP:GQ:PL	0/1:34,40:74:99:983,0,838
chr1	31347320	.	G	A	2775.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.482e+00;ClippingRankSum=0.00;DP=425;ExcessHet=4.8226;FS=1.023;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.34;ReadPosRankSum=0.099;SOR=0.776;set=variant	GT:AD:DP:GQ:PL	0/1:32,30:62:99:749,0,790
chr1	31349647	.	C	T	3097.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=460;ExcessHet=3.2736;FS=1.780;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=16.13;ReadPosRankSum=1.95;SOR=0.545;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:55,43:98:99:.:.:1095,0,1427
chr1	33562416	.	G	T	5835.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-6.380e-01;ClippingRankSum=0.00;DP=864;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=9.98;ReadPosRankSum=1.47;SOR=0.666;set=variant	GT:AD:DP:GQ:PL	0/1:125,82:207:99:1708,0,3091
chr1	35227306	.	C	A	4076.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.00;DP=584;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.29;ReadPosRankSum=-4.410e-01;SOR=0.686;set=variant	GT:AD:DP:GQ:PL	0/1:67,53:120:99:1265,0,1735
chr1	35250842	.	G	A	1406.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.00;DP=463;ExcessHet=3.0103;FS=5.140;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.19;ReadPosRankSum=0.823;SOR=1.075;set=variant	GT:AD:DP:GQ:PL	0/1:75,63:138:99:1441,0,1793
chr1	35259961	.	A	G	3700.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=1.48;ClippingRankSum=0.00;DP=402;ExcessHet=0.8432;FS=1.338;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=21.52;ReadPosRankSum=0.323;SOR=0.687;set=variant	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2591,234,0
chr1	35260202	.	G	A	919.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.00;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.95;ReadPosRankSum=0.776;SOR=0.719;set=variant	GT:AD:DP:GQ:PL	0/1:48,36:84:99:954,0,1301
chr1	35260363	.	C	T	1350.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=1.76;ClippingRankSum=0.00;DP=438;ExcessHet=3.0103;FS=4.208;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.16;ReadPosRankSum=1.43;SOR=1.057;set=variant	GT:AD:DP:GQ:PL	0/1:77,56:133:99:1385,0,1904
chr1	35260618	.	C	G	648.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.00;DP=390;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=7.91;ReadPosRankSum=-3.500e-01;SOR=1.002;set=variant	GT:AD:DP:GQ:PL	0/1:52,30:82:99:683,0,1365
chr1	35260769	.	C	T	450.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.27;ClippingRankSum=0.00;DP=211;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.59;ReadPosRankSum=0.269;SOR=0.776;set=variant	GT:AD:DP:GQ:PL	0/1:13,17:30:99:403,0,400
chr1	35333126	.	T	C	3355.61	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.51;ClippingRankSum=0.00;DP=478;ExcessHet=0.8432;FS=4.368;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=17.21;ReadPosRankSum=-1.097e+00;SOR=1.006;set=variant	GT:AD:DP:GQ:PL	0/1:46,39:85:99:877,0,1028
chr1	35370688	.	G	A	1003.63	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.464e+00;ClippingRankSum=0.00;DP=211;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=18.25;ReadPosRankSum=0.736;SOR=0.635;set=variant	GT:AD:DP:GQ:PL	0/1:13,16:29:99:418,0,370
chr1	36359669	.	A	G	9533.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662e+00;ClippingRankSum=0.00;DP=584;ExcessHet=0.7786;FS=1.382;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=20.33;ReadPosRankSum=-5.670e-01;SOR=0.555;set=variant	GT:AD:DP:GQ:PL	0/1:39,59:98:99:1414,0,891
chr1	36553673	.	A	G	22565.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-2.690e-01;ClippingRankSum=0.00;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.61;ReadPosRankSum=0.950;SOR=0.559;set=variant	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5143,540,0
chr1	36563797	.	C	T	1600.46	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.705e+00;ClippingRankSum=0.00;DP=137;ExcessHet=0.9154;FS=3.579;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=21.06;ReadPosRankSum=-3.900e-01;SOR=1.186;set=variant	GT:AD:DP:GQ:PL	0/1:9,17:26:99:506,0,245
chr1	37325477	.	A	C	6046.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-2.860e-01;ClippingRankSum=0.00;DP=586;ExcessHet=0.8432;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=19.44;ReadPosRankSum=-3.320e-01;SOR=0.682;set=variant	GT:AD:DP:GQ:PL	1/1:1,124:125:99:3829,339,0
chr1	38006359	.	A	G	14563.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=3.25;ClippingRankSum=0.00;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.69;ReadPosRankSum=1.78;SOR=0.656;set=variant	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2551,255,0
chr1	38019747	.	C	T	9306.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.584e+00;ClippingRankSum=0.00;DP=706;ExcessHet=3.4788;FS=0.544;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=16.13;ReadPosRankSum=0.301;SOR=0.633;set=variant	GT:AD:DP:GQ:PL	0/1:51,55:106:99:1423,0,1466
chr1	38078500	.	C	T	263.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.153e+00;ClippingRankSum=0.00;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=6.60;ReadPosRankSum=-4.370e-01;SOR=0.534;set=variant	GT:AD:DP:GQ:PL	0/1:25,15:40:99:298,0,651
chr1	40363054	.	G	C	13819.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.22;ClippingRankSum=0.00;DP=495;ExcessHet=3.0103;FS=1.622;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.09;ReadPosRankSum=0.123;SOR=1.014;set=variant	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2575,249,0
chr1	40771432	.	C	T	2690.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.00;DP=712;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.57;ReadPosRankSum=0.908;SOR=0.691;set=variant	GT:AD:DP:GQ:PL	0/1:79,59:138:99:1251,0,1760
chr1	40773149	.	T	C	3983.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.31;ClippingRankSum=0.00;DP=274;ExcessHet=1.8603;FS=14.563;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=18.36;ReadPosRankSum=0.600;SOR=1.452;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,45:45:99:1|1:40773149_T_C:1573,135,0
chr1	40773150	.	G	A	562.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.00;DP=273;ExcessHet=3.8535;FS=3.311;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=5.98;ReadPosRankSum=1.15;SOR=1.221;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:35,12:47:99:0|1:40773149_T_C:200,0,906
chr1	40777792	.	G	A	1366.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.056e+00;ClippingRankSum=0.00;DP=442;ExcessHet=4.8226;FS=3.193;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=9.90;ReadPosRankSum=1.01;SOR=0.982;set=variant	GT:AD:DP:GQ:PL	0/1:17,21:38:99:509,0,449
chr1	40980731	.	G	T	1256.82	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-9.650e-01;ClippingRankSum=0.00;DP=160;ExcessHet=2.5097;FS=9.040;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.14;ReadPosRankSum=1.80;SOR=0.968;set=variant	GT:AD:DP:GQ:PL	1/1:0,23:23:69:704,69,0
chr1	41285087	.	T	C	3034.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-4.420e-01;ClippingRankSum=0.00;DP=357;ExcessHet=6.2536;FS=0.906;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=10.76;ReadPosRankSum=-3.970e-01;SOR=0.780;set=variant	GT:AD:DP:GQ:PL	0/1:26,19:45:99:462,0,610
chr1	43201534	.	G	A	3825.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.00;DP=450;ExcessHet=6.2839;FS=0.415;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=12.22;ReadPosRankSum=0.723;SOR=0.741;set=variant	GT:AD:DP:GQ:PL	0/1:25,39:64:99:965,0,540
chr1	43201614	.	C	T	2947.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.00;DP=406;ExcessHet=3.8535;FS=1.080;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=14.04;ReadPosRankSum=0.108;SOR=0.614;set=variant	GT:AD:DP:GQ:PL	0/1:35,44:79:99:995,0,770
chr1	43212431	.	A	G	33472.45	PASS	AC=2;AF=1.00;AN=2;DP=1153;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.34;SOR=0.920;set=variant	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4721,461,0
chr1	43212926	.	G	A	6469.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.827e+00;ClippingRankSum=0.00;DP=901;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.93;ReadPosRankSum=0.599;SOR=0.699;set=variant	GT:AD:DP:GQ:PL	0/1:97,108:205:99:2533,0,2465
chr1	43223489	.	C	T	1018.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-7.210e-01;ClippingRankSum=0.00;DP=293;ExcessHet=3.8535;FS=1.426;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.02;ReadPosRankSum=-7.010e-01;SOR=0.566;set=variant	GT:AD:DP:GQ:PL	0/1:28,19:47:99:394,0,687
chr1	43232504	.	C	A	3270.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.93;ClippingRankSum=0.00;DP=534;ExcessHet=3.8535;FS=1.983;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.32;ReadPosRankSum=0.403;SOR=0.837;set=variant	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1148,0,1057
chr1	43394612	.	T	C	811.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=1.09;ClippingRankSum=0.00;DP=387;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.02;ReadPosRankSum=1.99;SOR=0.534;set=variant	GT:AD:DP:GQ:PL	0/1:46,35:81:99:846,0,1103
chr1	43395537	.	C	G	216.99	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-8.050e-01;ClippingRankSum=0.00;DP=117;ExcessHet=3.0103;FS=7.025;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.33;ReadPosRankSum=-1.609e+00;SOR=0.769;set=variant	GT:AD:DP:GQ:PL	0/1:11,10:21:99:251,0,343
chr1	43408966	.	G	A	680.04	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.501e+00;ClippingRankSum=0.00;DP=84;ExcessHet=0.9154;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.11;ReadPosRankSum=0.00;SOR=0.665;set=variant	GT:AD:DP:GQ:PL	0/1:10,4:14:99:107,0,225
chr1	43638436	.	G	T	987.96	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-3.380e-01;ClippingRankSum=0.00;DP=152;ExcessHet=4.8226;FS=3.105;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.05;ReadPosRankSum=-2.220e-01;SOR=1.101;set=variant	GT:AD:DP:GQ:PL	0/1:18,9:27:99:176,0,453
chr1	43649508	.	A	G	2894.23	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.00;DP=112;ExcessHet=0.1296;FS=2.415;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=34.05;ReadPosRankSum=-1.611e+00;SOR=1.706;set=variant	GT:AD:DP:GQ:PL	1/1:0,14:14:42:503,42,0
chr1	43652369	.	T	C	3944.46	PASS	AC=2;AF=1.00;AN=2;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.31;SOR=1.143;set=variant	GT:AD:DP:GQ:PL	1/1:0,22:22:66:666,66,0
chr1	43664218	.	C	T	5987.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.00;DP=532;ExcessHet=0.9154;FS=1.857;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.68;ReadPosRankSum=-1.193e+00;SOR=0.817;set=variant	GT:AD:DP:GQ:PL	0/1:53,39:92:99:895,0,1300
chr1	43664319	.	TA	T	1784.39	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.00;DP=192;ExcessHet=0.9154;FS=4.043;MLEAC=7;MLEAF=0.389;MQ=63.86;MQRankSum=0.00;QD=17.16;ReadPosRankSum=0.929;SOR=1.131;set=variant2	GT:AD:DP:GQ:PL	0/1:13,11:24:99:218,0,263
chr1	43675467	.	G	A	4279.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.00;DP=294;ExcessHet=0.7786;FS=1.309;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=20.00;ReadPosRankSum=-3.900e-02;SOR=0.589;set=variant	GT:AD:DP:GQ:PL	0/1:18,27:45:99:603,0,425
chr1	43699970	.	G	A	646.63	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.231e+00;ClippingRankSum=0.00;DP=209;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.43;ReadPosRankSum=1.84;SOR=0.693;set=variant	GT:AD:DP:GQ:PL	0/1:20,15:35:99:363,0,611
chr1	44083110	.	C	T	6367.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-8.500e-02;ClippingRankSum=0.00;DP=382;ExcessHet=3.9991;FS=0.474;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.90;ReadPosRankSum=-5.350e-01;SOR=0.755;set=variant	GT:AD:DP:GQ:PL	0/1:32,32:64:99:757,0,756
chr1	44083507	.	T	C	20736.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.00;DP=1270;ExcessHet=3.9991;FS=1.168;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.01;ReadPosRankSum=0.571;SOR=0.594;set=variant	GT:AD:DP:GQ:PL	0/1:117,116:233:99:2595,0,2647
chr1	44083519	.	G	A	18449.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-8.030e-01;ClippingRankSum=0.00;DP=1117;ExcessHet=3.9991;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.34;ReadPosRankSum=0.00;SOR=0.650;set=variant	GT:AD:DP:GQ:PL	0/1:102,95:197:99:2147,0,2621
chr1	44084739	.	C	T	4970.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.00;DP=329;ExcessHet=3.9991;FS=0.940;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.14;ReadPosRankSum=0.216;SOR=0.610;set=variant	GT:AD:DP:GQ:PL	0/1:31,23:54:99:542,0,771
chr1	44086831	.	C	T	8965.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-2.550e-01;ClippingRankSum=0.00;DP=668;ExcessHet=6.2536;FS=1.148;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.54;ReadPosRankSum=0.954;SOR=0.587;set=variant	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1206,0,1264
chr1	44290530	.	A	G	1477.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.92;ClippingRankSum=0.00;DP=306;ExcessHet=8.3924;FS=1.838;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=7.58;ReadPosRankSum=0.548;SOR=0.770;set=variant	GT:AD:DP:GQ:PL	0/1:25,15:40:99:361,0,585
chr1	45292173	.	G	A	2378.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.08;ClippingRankSum=0.00;DP=564;ExcessHet=3.2736;FS=5.994;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=12.14;ReadPosRankSum=0.972;SOR=1.067;set=variant	GT:AD:DP:GQ:PL	0/1:66,63:129:99:1566,0,1607
chr1	45292704	.	G	A	1929.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.165e+00;ClippingRankSum=0.00;DP=589;ExcessHet=3.2736;FS=1.149;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.54;ReadPosRankSum=0.179;SOR=0.791;set=variant	GT:AD:DP:GQ:PL	0/1:68,55:123:99:1337,0,1976
chr1	45293518	.	A	G	2631.06	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=1.49;ClippingRankSum=0.00;DP=153;ExcessHet=0.2709;FS=2.975;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=27.99;ReadPosRankSum=-8.820e-01;SOR=0.354;set=variant	GT:AD:DP:GQ:PL	1/1:1,28:29:52:924,52,0
chr1	45293752	.	T	C	1282.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.92;ClippingRankSum=0.00;DP=289;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=13.94;ReadPosRankSum=-3.120e-01;SOR=0.721;set=variant	GT:AD:DP:GQ:PL	0/1:21,25:46:99:656,0,516
chr1	45296711	.	G	A	767.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-5.600e-02;ClippingRankSum=0.00;DP=377;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.26;ReadPosRankSum=-4.840e-01;SOR=0.788;set=variant	GT:AD:DP:GQ:PL	0/1:58,35:93:99:802,0,1484
chr1	45340342	.	A	C	389.66	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.98;ClippingRankSum=0.00;DP=118;ExcessHet=3.2736;FS=3.892;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=16.24;ReadPosRankSum=1.15;SOR=1.555;set=variant	GT:AD:DP:GQ:PL	0/1:4,10:14:57:370,0,57
chr1	45444038	.	G	A	6320.78	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-5.010e-01;ClippingRankSum=0.00;DP=583;ExcessHet=0.3904;FS=1.043;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=20.86;ReadPosRankSum=-1.270e-01;SOR=0.666;set=variant	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2841,291,0
chr1	45444136	.	T	C	1136.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=3.46;ClippingRankSum=0.00;DP=594;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.53;ReadPosRankSum=1.08;SOR=1.022;set=variant	GT:AD:DP:GQ:PL	0/1:63,45:108:99:1171,0,1436
chr1	45797505	.	C	G	5492.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-7.790e-01;ClippingRankSum=0.00;DP=588;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.94;ReadPosRankSum=0.079;SOR=0.700;set=variant	GT:AD:DP:GQ:PL	0/1:48,41:89:99:1010,0,1249
chr1	45974776	.	C	T	154.79	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.00;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=15.48;ReadPosRankSum=0.637;SOR=1.085;set=variant	GT:AD:DP:GQ:PL	0/1:4,6:10:99:187,0,118
chr1	46655158	.	T	C	37473.45	PASS	AC=2;AF=1.00;AN=2;DP=1298;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.44;SOR=0.818;set=variant	GT:AD:DP:GQ:PL	1/1:0,200:200:99:5963,600,0
chr1	46660295	.	T	C	1566.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-9.900e-02;ClippingRankSum=0.00;DP=382;ExcessHet=3.8535;FS=2.941;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.11;ReadPosRankSum=2.07;SOR=0.476;set=variant	GT:AD:DP:GQ:PL	0/1:48,30:78:99:742,0,1135
chr1	46739814	.	T	C	353.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=2.03;ClippingRankSum=0.00;DP=373;ExcessHet=3.0103;FS=2.514;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=5.71;ReadPosRankSum=0.018;SOR=1.151;set=variant	GT:AD:DP:GQ:PL	0/1:45,17:62:99:388,0,1189
chr1	46870761	.	C	A	804.34	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.121e+00;ClippingRankSum=0.00;DP=303;ExcessHet=0.4012;FS=2.581;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=15.77;ReadPosRankSum=0.747;SOR=0.354;set=variant	GT:AD:DP:GQ:PL	0/1:17,19:36:99:428,0,425
chr1	46871986	.	T	C	22552.91	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=-2.418e+00;ClippingRankSum=0.00;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=25.72;ReadPosRankSum=-8.500e-02;SOR=0.806;set=variant	GT:AD:DP:GQ:PL	0/1:52,77:129:99:1745,0,1162
chr1	47280859	.	G	A	3928.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.259e+00;ClippingRankSum=0.00;DP=711;ExcessHet=6.2839;FS=0.528;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=8.91;ReadPosRankSum=-2.330e-01;SOR=0.661;set=variant	GT:AD:DP:GQ:PL	0/1:63,66:129:99:1420,0,1419
chr1	47284395	.	G	A	2225.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.00;DP=662;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=13.41;ReadPosRankSum=1.37;SOR=0.590;set=variant	GT:AD:DP:GQ:PL	0/1:75,91:166:99:2260,0,1745
chr1	47395833	.	C	T	1549.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.299e+00;ClippingRankSum=0.00;DP=554;ExcessHet=3.0103;FS=2.102;MLEAC=1;MLEAF=0.056;MQ=54.24;MQRankSum=-3.780e-01;QD=10.13;ReadPosRankSum=1.96;SOR=0.895;set=variant	GT:AD:DP:GQ:PL	0/1:84,69:153:99:1584,0,2182
chr1	47395973	.	G	A	14876.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-2.283e+00;ClippingRankSum=0.00;DP=741;ExcessHet=6.2839;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=59.78;MQRankSum=0.00;QD=20.32;ReadPosRankSum=0.580;SOR=0.699;set=variant	GT:AD:DP:GQ:PL	0/1:64,70:134:99:1698,0,1662
chr1	47406976	.	G	A	1011.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.507e+00;ClippingRankSum=0.00;DP=444;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.056;MQ=59.11;MQRankSum=-1.363e+00;QD=10.02;ReadPosRankSum=-1.551e+00;SOR=0.432;set=variant	GT:AD:DP:GQ:PL	0/1:55,46:101:99:1046,0,1576
chr1	47607281	.	C	T	2505.84	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-3.910e-01;ClippingRankSum=0.00;DP=334;ExcessHet=2.5097;FS=1.150;MLEAC=6;MLEAF=0.333;MQ=59.04;MQRankSum=-9.000e-01;QD=13.26;ReadPosRankSum=0.928;SOR=0.787;set=variant	GT:AD:DP:GQ:PL	0/1:6,38:44:16:959,0,16
chr1	47607785	.	G	A	1286.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.83;ClippingRankSum=0.00;DP=222;ExcessHet=6.2839;FS=1.694;MLEAC=5;MLEAF=0.278;MQ=58.00;MQRankSum=-1.910e-01;QD=9.97;ReadPosRankSum=0.557;SOR=0.879;set=variant	GT:AD:DP:GQ:PL	0/1:35,13:48:99:274,0,912
chr1	47607851	.	A	T	6222.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.44;ClippingRankSum=0.00;DP=400;ExcessHet=0.2709;FS=1.300;MLEAC=10;MLEAF=0.556;MQ=53.14;MQRankSum=-3.813e+00;QD=22.38;ReadPosRankSum=-2.680e-01;SOR=0.856;set=variant	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2026,216,0
chr1	47608983	.	G	T	1938.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-8.680e-01;ClippingRankSum=0.00;DP=358;ExcessHet=6.2839;FS=1.686;MLEAC=5;MLEAF=0.278;MQ=43.87;MQRankSum=-6.800e-01;QD=8.89;ReadPosRankSum=0.091;SOR=0.568;set=variant	GT:AD:DP:GQ:PL	0/1:40,39:79:99:913,0,1022
chr1	47609489	.	T	C	15327.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-7.240e-01;ClippingRankSum=0.00;DP=848;ExcessHet=0.2709;FS=0.720;MLEAC=10;MLEAF=0.556;MQ=59.74;MQRankSum=0.00;QD=22.77;ReadPosRankSum=0.378;SOR=0.596;set=variant	GT:AD:DP:GQ:PL	1/1:0,191:191:99:5603,573,0
chr1	47610065	.	A	C	1976.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.00;DP=409;ExcessHet=3.8535;FS=0.541;MLEAC=3;MLEAF=0.167;MQ=54.80;MQRankSum=1.64;QD=10.86;ReadPosRankSum=0.266;SOR=0.743;set=variant	GT:AD:DP:GQ:PL	0/1:29,41:70:99:993,0,621
chr1	47611598	.	T	C	3030.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=1.51;ClippingRankSum=0.00;DP=281;ExcessHet=0.9154;FS=0.704;MLEAC=7;MLEAF=0.389;MQ=55.14;MQRankSum=-1.343e+00;QD=21.49;ReadPosRankSum=-4.110e-01;SOR=0.570;set=variant	GT:AD:DP:GQ:PL	1/1:1,36:37:72:1174,72,0
chr1	47614425	.	C	T	1818.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.344e+00;ClippingRankSum=0.00;DP=469;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.056;MQ=52.19;MQRankSum=-3.095e+00;QD=13.47;ReadPosRankSum=0.601;SOR=0.845;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:61,74:135:99:0|1:47614425_C_T:1853,0,2142
chr1	47614434	.	C	T	2210.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.274e+00;ClippingRankSum=0.00;DP=481;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=51.99;MQRankSum=1.98;QD=10.00;ReadPosRankSum=-1.100e-01;SOR=0.711;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:63,47:110:99:1|0:47614425_C_T:1106,0,2439
chr1	47685455	.	T	C	26771.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.620e-01;ClippingRankSum=0.00;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=30.67;ReadPosRankSum=1.39;SOR=0.390;set=variant	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4753,438,0
chr1	47685575	.	T	C	157.36	my_filter	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.889e+00;ClippingRankSum=0.00;DP=459;ExcessHet=3.2451;FS=221.927;MLEAC=1;MLEAF=0.056;MQ=76.32;MQRankSum=0.00;QD=1.81;ReadPosRankSum=-3.061e+00;SOR=6.271;set=FilteredInAll	GT:AD:DP:GQ:PGT:PID:PL	0/1:71,16:87:99:0|1:47685575_T_C:190,0,4196
chr1	47685581	.	A	C	157.83	my_filter	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.699e+00;ClippingRankSum=0.00;DP=422;ExcessHet=3.2451;FS=112.077;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=2.05;ReadPosRankSum=-4.633e+00;SOR=4.605;set=FilteredInAll	GT:AD:DP:GQ:PGT:PID:PL	0/1:68,9:77:99:0|1:47685575_T_C:191,0,4155
chr1	47767914	.	G	A	5329.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-1.812e+00;ClippingRankSum=0.00;DP=263;ExcessHet=1.5127;FS=1.401;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.02;ReadPosRankSum=-4.430e-01;SOR=0.552;set=variant	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1229,129,0
chr1	47799639	.	G	C	15224.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=1.59;ClippingRankSum=0.00;DP=623;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=26.07;ReadPosRankSum=-2.920e-01;SOR=0.701;set=variant	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2707,240,0
chr1	49128904	.	C	T	597.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.00;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.54;ReadPosRankSum=0.989;SOR=0.602;set=variant	GT:AD:DP:GQ:PL	0/1:40,30:70:99:632,0,907
chr1	53676448	.	G	A	6942.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-7.900e-02;ClippingRankSum=0.00;DP=750;ExcessHet=11.4027;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=10.47;ReadPosRankSum=0.475;SOR=0.700;set=variant	GT:AD:DP:GQ:PL	0/1:74,62:136:99:1397,0,1849
chr1	53712727	.	C	T	1579.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-4.900e-02;ClippingRankSum=0.00;DP=486;ExcessHet=4.8226;FS=1.014;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=6.03;ReadPosRankSum=0.012;SOR=0.775;set=variant	GT:AD:DP:GQ:PL	0/1:57,30:87:99:573,0,1355
chr1	53716416	.	G	A	714.18	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.00;DP=161;ExcessHet=10.0405;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=6.05;ReadPosRankSum=0.291;SOR=0.620;set=variant	GT:AD:DP:GQ:PL	0/1:18,9:27:99:184,0,455
chr1	53732315	.	G	T	7372.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.619e+00;ClippingRankSum=0.00;DP=783;ExcessHet=11.4027;FS=0.531;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=10.70;ReadPosRankSum=0.563;SOR=0.627;set=variant	GT:AD:DP:GQ:PL	0/1:75,58:133:99:1343,0,1953
chr1	53742506	.	A	G	3572.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=2.71;ClippingRankSum=0.00;DP=350;ExcessHet=11.4027;FS=2.054;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.38;ReadPosRankSum=-8.700e-01;SOR=0.832;set=variant	GT:AD:DP:GQ:PL	0/1:30,17:47:99:481,0,836
chr1	53792651	.	A	C	5888.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=2.04;ClippingRankSum=0.00;DP=716;ExcessHet=2.5097;FS=0.526;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.66;ReadPosRankSum=0.131;SOR=0.787;set=variant	GT:AD:DP:GQ:PL	0/1:91,54:145:99:1193,0,2142
chr1	53793511	.	T	C	1669.06	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-1.045e+00;ClippingRankSum=0.00;DP=231;ExcessHet=2.5097;FS=4.853;MLEAC=6;MLEAF=0.333;MQ=63.83;MQRankSum=0.00;QD=12.64;ReadPosRankSum=-1.216e+00;SOR=0.806;set=variant	GT:AD:DP:GQ:PL	0/1:11,11:22:99:179,0,399
chr1	55330966	.	T	C	4025.47	PASS	AC=2;AF=1.00;AN=2;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.55;SOR=2.423;set=variant	GT:AD:DP:GQ:PL	1/1:0,21:21:63:742,63,0
chr1	55464986	.	G	A	103.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.00;DP=225;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=2.81;ReadPosRankSum=-5.310e-01;SOR=1.546;set=variant	GT:AD:DP:GQ:PL	0/1:29,8:37:99:138,0,763
chr1	55505552	.	A	ACTG	6232.11	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.410e-01;ClippingRankSum=0.00;DP=505;ExcessHet=1.5127;FS=2.775;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=21.79;ReadPosRankSum=-2.820e-01;SOR=0.545;set=variant2	GT:AD:DP:GQ:PL	0/1:48,51:99:99:1996,0,1890
chr1	55518316	.	C	T	4077.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.00;DP=438;ExcessHet=2.5097;FS=5.379;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.93;ReadPosRankSum=1.87;SOR=0.431;set=variant	GT:AD:DP:GQ:PL	0/1:32,37:69:99:963,0,735
chr1	55518467	.	A	G	4968.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.63;ClippingRankSum=0.00;DP=454;ExcessHet=2.5097;FS=0.924;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=16.62;ReadPosRankSum=-2.800e-01;SOR=0.771;set=variant	GT:AD:DP:GQ:PL	0/1:28,47:75:99:1276,0,600
chr1	55523033	.	A	G	22228.45	PASS	AC=2;AF=1.00;AN=2;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.98;SOR=1.136;set=variant	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3482,315,0
chr1	55524197	.	A	G	9919.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=4.68;ClippingRankSum=0.00;DP=404;ExcessHet=3.2736;FS=7.316;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.55;ReadPosRankSum=-2.470e-01;SOR=0.966;set=variant	GT:AD:DP:GQ:PL	0/1:45,36:81:99:870,0,1006
chr1	55524237	.	G	A	17570.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=1.44;ClippingRankSum=0.00;DP=789;ExcessHet=3.2736;FS=1.673;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=22.50;ReadPosRankSum=2.66;SOR=0.489;set=variant	GT:AD:DP:GQ:PL	0/1:74,58:132:99:1248,0,1679
chr1	55529187	.	G	A	13386.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.733e+00;ClippingRankSum=0.00;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=24.74;ReadPosRankSum=-1.362e+00;SOR=0.686;set=variant	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2396,255,0
chr1	55541174	.	A	G	3780.04	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=1.39;ClippingRankSum=0.00;DP=196;ExcessHet=3.8535;FS=10.730;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=19.38;ReadPosRankSum=1.56;SOR=0.287;set=variant	GT:AD:DP:GQ:PL	0/1:18,14:32:99:286,0,445
chr1	55548991	.	C	T	655.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.00;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=9.94;ReadPosRankSum=2.40;SOR=0.598;set=variant	GT:AD:DP:GQ:PL	0/1:38,28:66:99:690,0,976
chr1	55604692	.	TA	T	413.21	my_filter	AC=1;AF=0.278;AN=2;BaseQRankSum=0.00;ClippingRankSum=0.00;DP=459;ExcessHet=6.2839;FS=1.643;MLEAC=5;MLEAF=0.278;MQ=71.41;MQRankSum=0.00;QD=1.84;ReadPosRankSum=-5.630e-01;SOR=0.562;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:45,14:59:99:169,0,1086
chr1	55638075	.	G	A	4041.45	PASS	AC=2;AF=1.00;AN=2;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.26;SOR=1.027;set=variant	GT:AD:DP:GQ:PL	1/1:0,22:22:66:633,66,0
chr1	57158051	.	G	A	1788.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.291e+00;ClippingRankSum=0.00;DP=328;ExcessHet=3.8535;FS=2.231;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=13.15;ReadPosRankSum=-1.702e+00;SOR=0.961;set=variant	GT:AD:DP:GQ:PL	0/1:19,25:44:99:555,0,448
chr1	57422484	.	C	T	12151.45	PASS	AC=2;AF=1.00;AN=2;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=26.88;SOR=0.805;set=variant	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1302,141,0
chr1	61869783	.	G	A	10207.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.63;ClippingRankSum=0.00;DP=811;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=17.51;ReadPosRankSum=0.033;SOR=0.753;set=variant	GT:AD:DP:GQ:PL	0/1:60,78:138:99:1895,0,1362
chr1	63788951	.	C	A	2457.83	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-2.342e+00;ClippingRankSum=0.00;DP=230;ExcessHet=8.3924;FS=0.557;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.89;ReadPosRankSum=0.416;SOR=0.763;set=variant	GT:AD:DP:GQ:PL	0/1:14,26:40:99:696,0,394
chr1	63881552	.	C	T	7459.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.00;DP=278;ExcessHet=3.2736;FS=10.289;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=27.03;ReadPosRankSum=1.62;SOR=0.215;set=variant	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1193,114,0
chr1	64114301	.	T	C	5010.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=9.000e-03;ClippingRankSum=0.00;DP=374;ExcessHet=1.8603;FS=3.251;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.64;ReadPosRankSum=-4.690e-01;SOR=0.528;set=variant	GT:AD:DP:GQ:PL	0/1:50,14:64:99:222,0,1234
chr1	65845076	.	C	T	2388.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-6.110e-01;ClippingRankSum=0.00;DP=261;ExcessHet=11.4027;FS=1.130;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.12;ReadPosRankSum=-2.440e-01;SOR=0.822;set=variant	GT:AD:DP:GQ:PL	0/1:19,14:33:99:319,0,480
chr1	65858145	.	G	A	5396.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-1.444e+00;ClippingRankSum=0.00;DP=398;ExcessHet=3.4788;FS=1.372;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=16.25;ReadPosRankSum=0.852;SOR=0.800;set=variant	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2076,198,0
chr1	65860687	.	A	C	7543.49	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.00;DP=462;ExcessHet=11.4027;FS=1.155;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=16.65;ReadPosRankSum=0.175;SOR=0.829;set=variant	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2494,237,0
chr1	66036441	.	A	G	98.87	PASS	AC=1;AF=0.071;AN=2;BaseQRankSum=1.92;ClippingRankSum=0.00;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.071;MQ=49.92;MQRankSum=0.00;QD=10.99;ReadPosRankSum=1.09;SOR=0.527;set=variant	GT:AD:DP:GQ:PL	0/1:5,4:9:99:130,0,163
chr1	66058513	.	A	G	4331.07	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.00;DP=269;ExcessHet=0.2709;FS=0.996;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=25.78;ReadPosRankSum=0.441;SOR=0.565;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1487,150,0
chr1	66067109	.	T	C	723.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=3.62;ClippingRankSum=0.00;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=16.09;ReadPosRankSum=0.024;SOR=0.578;set=variant	GT:AD:DP:GQ:PL	0/1:21,24:45:99:758,0,536
chr1	66096093	.	T	TA	54.09	PASS	AC=2;AF=0.333;AN=2;DP=22;ExcessHet=0.7918;FS=0.000;MLEAC=3;MLEAF=0.500;MQ=27.38;QD=27.05;SOR=0.693;set=variant2	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	66102257	.	G	A	12344.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-4.460e-01;ClippingRankSum=0.00;DP=547;ExcessHet=4.8226;FS=0.667;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=22.69;ReadPosRankSum=0.262;SOR=0.618;set=variant	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2940,294,0
chr1	66829262	.	A	G	3741.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=3.51;ClippingRankSum=0.00;DP=195;ExcessHet=3.9991;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=21.63;ReadPosRankSum=-6.940e-01;SOR=0.661;set=variant	GT:AD:DP:GQ:PL	0/1:15,21:36:99:691,0,376
chr1	66831370	.	G	A	19162.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-1.564e+00;ClippingRankSum=0.00;DP=836;ExcessHet=1.5127;FS=1.659;MLEAC=13;MLEAF=0.722;MQ=60.01;MQRankSum=0.00;QD=24.47;ReadPosRankSum=0.397;SOR=0.504;set=variant	GT:AD:DP:GQ:PL	1/1:2,142:144:99:4296,382,0
chr1	67633812	.	G	T	1531.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-3.530e-01;ClippingRankSum=0.00;DP=158;ExcessHet=3.9991;FS=2.576;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.45;ReadPosRankSum=-1.520e-01;SOR=0.450;set=variant	GT:AD:DP:GQ:PL	0/1:9,13:22:99:331,0,204
chr1	67685387	.	T	C	14824.45	PASS	AC=2;AF=1.00;AN=2;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.79;SOR=1.199;set=variant	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2153,222,0
chr1	67795319	.	T	C	7471.45	PASS	AC=2;AF=1.00;AN=2;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.98;SOR=0.716;set=variant	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1237,135,0
chr1	67833527	.	G	C	524.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.167e+00;ClippingRankSum=0.00;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=9.72;ReadPosRankSum=-1.489e+00;SOR=0.712;set=variant	GT:AD:DP:GQ:PL	0/1:29,25:54:99:559,0,792
chr1	67852335	.	G	A	6665.49	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.373e+00;ClippingRankSum=0.00;DP=477;ExcessHet=11.4027;FS=1.820;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=14.27;ReadPosRankSum=-9.230e-01;SOR=0.549;set=variant	GT:AD:DP:GQ:PL	0/1:19,32:51:99:774,0,483
chr1	67861520	.	C	A	3054.83	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=2.24;ClippingRankSum=0.00;DP=125;ExcessHet=8.3924;FS=1.916;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=24.44;ReadPosRankSum=0.677;SOR=0.470;set=variant	GT:AD:DP:GQ:PL	1/1:0,22:22:66:799,66,0
chr1	70904800	.	G	T	2447.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;ClippingRankSum=0.00;DP=313;ExcessHet=3.4788;FS=4.575;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=10.74;ReadPosRankSum=0.414;SOR=0.453;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:911,93,0
chr1	72058552	.	G	A	24066.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-2.561e+00;ClippingRankSum=0.00;DP=890;ExcessHet=3.0103;FS=1.596;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.47;ReadPosRankSum=0.022;SOR=0.408;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,133:133:99:.:.:4078,399,0
chr1	75622616	.	C	T	435.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-4.470e-01;ClippingRankSum=0.00;DP=172;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.26;ReadPosRankSum=0.255;SOR=0.813;set=variant	GT:AD:DP:GQ:PL	0/1:11,8:19:99:204,0,250
chr1	76198436	.	T	C	1572.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.00;DP=233;ExcessHet=6.2839;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=12.68;ReadPosRankSum=-3.130e-01;SOR=0.643;set=variant	GT:AD:DP:GQ:PL	0/1:17,17:34:99:466,0,448
chr1	76227022	.	A	G	1585.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.96;ClippingRankSum=0.00;DP=240;ExcessHet=6.2839;FS=11.066;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.92;ReadPosRankSum=-9.400e-02;SOR=1.532;set=variant	GT:AD:DP:GQ:PL	0/1:20,16:36:99:412,0,529
chr1	76344011	.	C	A	10819.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-4.750e-01;ClippingRankSum=0.00;DP=512;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=21.17;ReadPosRankSum=1.29;SOR=0.691;set=variant	GT:AD:DP:GQ:PL	0/1:44,33:77:99:739,0,1208
chr1	76344711	.	A	T	19989.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=1.28;ClippingRankSum=0.00;DP=739;ExcessHet=3.8535;FS=0.716;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=27.35;ReadPosRankSum=-1.489e+00;SOR=0.804;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:49,56:105:99:.:.:1379,0,1176
chr1	76346920	.	C	CAT	11389.41	PASS	AC=2;AF=1.00;AN=2;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.83;SOR=1.516;set=variant2	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2326,157,0
chr1	78392446	.	G	A	7790.78	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-1.425e+00;ClippingRankSum=0.00;DP=585;ExcessHet=0.3904;FS=7.602;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=21.23;ReadPosRankSum=-4.070e-01;SOR=0.782;set=variant	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2782,219,0
chr1	85816134	.	T	C	624.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=2.18;ClippingRankSum=0.00;DP=369;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=7.27;ReadPosRankSum=-1.589e+00;SOR=0.866;set=variant	GT:AD:DP:GQ:PL	0/1:57,29:86:99:659,0,1341
chr1	85816224	.	G	A	614.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.262e+00;ClippingRankSum=0.00;DP=306;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.79;ReadPosRankSum=1.89;SOR=0.939;set=variant	GT:AD:DP:GQ:PL	0/1:29,28:57:99:649,0,747
chr1	86173943	.	C	T	1572.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.916e+00;ClippingRankSum=0.00;DP=434;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=14.70;ReadPosRankSum=0.866;SOR=0.632;set=variant	GT:AD:DP:GQ:PL	0/1:41,66:107:99:1607,0,1015
chr1	86896541	.	G	A	3859.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.00;DP=704;ExcessHet=6.2839;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=7.36;ReadPosRankSum=0.256;SOR=0.655;set=variant	GT:AD:DP:GQ:PL	0/1:103,58:161:99:1205,0,2519
chr1	86904588	.	C	T	1030.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=1.07;ClippingRankSum=0.00;DP=459;ExcessHet=3.0103;FS=4.551;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=12.13;ReadPosRankSum=-3.430e-01;SOR=1.302;set=variant	GT:AD:DP:GQ:PL	0/1:46,39:85:99:1065,0,1239
chr1	86909493	.	C	T	491.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.822e+00;ClippingRankSum=0.00;DP=370;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.78;ReadPosRankSum=-1.824e+00;SOR=0.321;set=variant	GT:AD:DP:GQ:PL	0/1:33,23:56:99:526,0,981
chr1	86909582	.	G	A	841.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-4.927e+00;ClippingRankSum=0.00;DP=395;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.79;ReadPosRankSum=0.264;SOR=0.379;set=variant	GT:AD:DP:GQ:PL	0/1:40,38:78:99:876,0,1207
chr1	86939130	.	C	T	14744.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-1.834e+00;ClippingRankSum=0.00;DP=577;ExcessHet=3.2736;FS=1.806;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.91;ReadPosRankSum=0.585;SOR=0.499;set=variant	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2239,222,0
chr1	86952324	.	A	G	23877.91	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.00;DP=841;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.94;ReadPosRankSum=0.715;SOR=0.686;set=variant	GT:AD:DP:GQ:PL	0/1:62,65:127:99:1662,0,1537
chr1	86959173	.	T	C	21385.45	PASS	AC=2;AF=1.00;AN=2;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.95;SOR=0.820;set=variant	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3806,381,0
chr1	86965419	.	T	C	3480.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.00;DP=356;ExcessHet=1.5127;FS=4.820;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=18.81;ReadPosRankSum=1.41;SOR=1.085;set=variant	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1083,0,1023
chr1	91382442	.	G	A	418.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.125e+00;ClippingRankSum=0.00;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.02;ReadPosRankSum=1.38;SOR=0.859;set=variant	GT:AD:DP:GQ:PL	0/1:18,20:38:99:453,0,472
chr1	91404308	.	T	C	750.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=5.85;ClippingRankSum=0.00;DP=357;ExcessHet=3.0103;FS=4.707;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.73;ReadPosRankSum=1.95;SOR=1.491;set=variant	GT:AD:DP:GQ:PL	0/1:39,25:64:99:785,0,1047
chr1	92148013	.	C	T	983.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.486e+00;ClippingRankSum=0.00;DP=228;ExcessHet=3.8535;FS=3.055;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.85;ReadPosRankSum=0.287;SOR=1.086;set=variant	GT:AD:DP:GQ:PL	0/1:21,19:40:99:451,0,590
chr1	92148227	.	C	G	24035.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=1.70;ClippingRankSum=0.00;DP=1170;ExcessHet=2.5097;FS=1.275;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=21.37;ReadPosRankSum=0.201;SOR=0.879;set=variant	GT:AD:DP:GQ:PL	0/1:137,89:226:99:2497,0,3801
chr1	92174260	.	A	G	8647.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=1.13;ClippingRankSum=0.00;DP=408;ExcessHet=3.2736;FS=0.635;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=21.20;ReadPosRankSum=0.995;SOR=0.677;set=variant	GT:AD:DP:GQ:PL	0/1:49,26:75:99:542,0,1243
chr1	92185657	.	C	T	1871.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.00;DP=439;ExcessHet=6.2839;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=6.34;ReadPosRankSum=-1.600e-02;SOR=0.712;set=variant	GT:AD:DP:GQ:PL	0/1:52,25:77:99:464,0,1204
chr1	92262874	.	T	C	8404.12	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.00;DP=836;ExcessHet=15.7960;FS=2.430;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=10.96;ReadPosRankSum=0.861;SOR=0.890;set=variant	GT:AD:DP:GQ:PL	0/1:61,72:133:99:1777,0,1367
chr1	92763091	.	C	CA	214.89	PASS	AC=1;AF=0.063;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.00;DP=123;ExcessHet=5.5175;FS=0.000;MLEAC=1;MLEAF=0.063;MQ=71.12;MQRankSum=0.00;QD=11.94;ReadPosRankSum=0.365;SOR=0.497;set=variant2	GT:AD:DP:GQ:PL	0/1:15,3:18:87:87,0,234
chr1	92944314	.	CAGAGAG	CAGAGAGAGAG,CAGAGAGAGAGAG,C	2703.90	PASS	AC=1,1,0;AF=0.278,0.278,0.167;AN=2;BaseQRankSum=-6.890e-01;ClippingRankSum=0.00;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=4,4,1;MLEAF=0.222,0.222,0.056;MQ=59.79;MQRankSum=0.00;QD=37.76;ReadPosRankSum=0.00;SOR=0.468;set=variant2	GT:AD:DP:GQ:PL	1/2:0,3,3,0:9:56:403,141,112,90,0,56,313,131,83,302
chr1	92946479	.	G	A	11163.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-4.600e-02;ClippingRankSum=0.00;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.63;ReadPosRankSum=1.94;SOR=0.726;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,59:59:99:.:.:1864,177,0
chr1	92979354	.	A	G	18400.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=4.97;ClippingRankSum=0.00;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=33.10;ReadPosRankSum=0.811;SOR=0.922;set=variant	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2767,225,0
chr1	93089823	.	T	C	667.54	PASS	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=8;MLEAF=1.00;MQ=54.77;QD=27.81;SOR=1.051;set=variant	GT:AD:DP:GQ:PL	1/1:0,5:5:15:140,15,0
chr1	93160902	.	T	C	16870.45	PASS	AC=2;AF=1.00;AN=2;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.74;SOR=1.017;set=variant	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2738,267,0
chr1	94471075	.	A	G	5237.45	PASS	AC=2;AF=1.00;AN=2;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.46;SOR=0.737;set=variant	GT:AD:DP:GQ:PL	1/1:0,19:19:57:553,57,0
chr1	94544135	.	A	AC	473.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;ClippingRankSum=0.00;DP=38;ExcessHet=4.7712;FS=0.000;MLEAC=9;MLEAF=0.643;MQ=57.97;MQRankSum=0.00;QD=16.92;ReadPosRankSum=-3.980e-01;SOR=0.458;set=variant2	GT:AD:DP:GQ:PL	0/1:1,4:5:16:109,0,16
chr1	94544234	.	T	C	1176.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.89;ClippingRankSum=0.00;DP=360;ExcessHet=3.2736;FS=3.451;MLEAC=2;MLEAF=0.111;MQ=60.10;MQRankSum=0.00;QD=10.51;ReadPosRankSum=0.845;SOR=1.036;set=variant	GT:AD:DP:GQ:PL	0/1:36,26:62:99:626,0,823
chr1	94578548	.	T	C	10284.45	PASS	AC=2;AF=1.00;AN=2;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.98;SOR=1.595;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1082,96,0
chr1	94930345	.	G	A	7092.08	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.00;DP=620;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=16.49;ReadPosRankSum=0.704;SOR=0.656;set=variant	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2626,258,0
chr1	95001600	.	A	C	17051.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.830e-01;ClippingRankSum=0.00;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=31.12;ReadPosRankSum=-5.370e-01;SOR=0.653;set=variant	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3190,297,0
chr1	98348885	.	G	A	5973.71	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.00;DP=426;ExcessHet=8.3924;FS=1.116;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=14.46;ReadPosRankSum=-9.400e-02;SOR=0.601;set=variant	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1603,134,0
chr1	100316589	.	A	G	3925.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=1.49;ClippingRankSum=0.00;DP=317;ExcessHet=0.9154;FS=1.592;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=23.51;ReadPosRankSum=0.106;SOR=0.513;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1654,162,0
chr1	100336361	.	C	T	6183.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.00;DP=374;ExcessHet=1.8603;FS=5.288;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.47;ReadPosRankSum=-2.260e-01;SOR=0.454;set=variant	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1479,115,0
chr1	100346741	.	T	C	9986.16	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.00;DP=417;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=26.28;ReadPosRankSum=-3.410e-01;SOR=0.712;set=variant	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2703,219,0
chr1	100671860	.	AT	A	104.93	my_filter	AC=1;AF=0.167;AN=2;BaseQRankSum=1.41;ClippingRankSum=0.00;DP=255;ExcessHet=6.5821;FS=2.043;MLEAC=4;MLEAF=0.222;MQ=66.88;MQRankSum=0.00;QD=1.31;ReadPosRankSum=1.58;SOR=0.459;set=FilteredInAll	GT:AD:DP:GQ:PGT:PID:PL	0/1:20,7:27:35:0|1:100671860_AT_A:35,0,488
chr1	100672060	.	T	C	4934.92	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.65;ClippingRankSum=0.00;DP=179;ExcessHet=3.0103;FS=3.041;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.20;ReadPosRankSum=-1.260e-01;SOR=0.283;set=variant	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1292,123,0
chr1	101203698	.	C	T	4598.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.00;DP=657;ExcessHet=1.5127;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.77;ReadPosRankSum=-7.160e-01;SOR=0.706;set=variant	GT:AD:DP:GQ:PL	0/1:64,57:121:99:1377,0,1556
chr1	101203827	.	G	A	17654.45	PASS	AC=2;AF=1.00;AN=2;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.57;SOR=1.642;set=variant	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3045,297,0
chr1	103352451	.	A	G	8392.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.00;DP=307;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=28.07;ReadPosRankSum=2.47;SOR=0.804;set=variant	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1497,144,0
chr1	103354138	.	A	G	7035.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.95;ClippingRankSum=0.00;DP=216;ExcessHet=3.0103;FS=4.408;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=32.57;ReadPosRankSum=0.127;SOR=1.481;set=variant	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1505,129,0
chr1	103354428	.	A	G	8898.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.01;ClippingRankSum=0.00;DP=324;ExcessHet=3.2736;FS=3.141;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=27.90;ReadPosRankSum=0.925;SOR=1.000;set=variant	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2359,210,0
chr1	103379918	.	G	A	7013.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-2.690e-01;ClippingRankSum=0.00;DP=245;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=28.86;ReadPosRankSum=1.25;SOR=0.715;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1120,102,0
chr1	103471456	.	CCATCAT	CCAT,C	13361.41	PASS	AC=2,0;AF=0.111,0.889;AN=2;BaseQRankSum=-1.105e+00;ClippingRankSum=0.00;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2,16;MLEAF=0.111,0.889;MQ=59.97;MQRankSum=0.00;QD=32.42;ReadPosRankSum=-1.549e+00;SOR=0.390;set=variant2	GT:AD:DP:GQ:PL	1/1:0,0,54:54:99:2339,2339,2339,164,164,0
chr1	103496805	.	GAA	GA,G	2234.49	PASS	AC=1,0;AF=0.111,0.667;AN=2;BaseQRankSum=-4.200e-02;ClippingRankSum=0.00;DP=129;ExcessHet=4.8226;FS=17.665;MLEAC=2,12;MLEAF=0.111,0.667;MQ=60.01;MQRankSum=0.00;QD=19.60;ReadPosRankSum=0.00;SOR=0.021;set=variant2	GT:AD:DP:GQ:PL	0/1:3,0,20:26:3:441,476,648,0,76,3
chr1	107979396	.	A	C	11047.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.00;ClippingRankSum=0.00;DP=390;ExcessHet=3.0103;FS=2.082;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=28.84;ReadPosRankSum=1.73;SOR=0.412;set=variant	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1577,128,0
chr1	109884775	.	T	G	5441.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.00;DP=198;ExcessHet=3.0103;FS=3.522;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.49;ReadPosRankSum=-1.969e+00;SOR=0.355;set=variant	GT:AD:DP:GQ:PL	1/1:0,26:26:78:840,78,0
chr1	109897103	.	A	G	13737.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.00;DP=480;ExcessHet=3.0103;FS=1.118;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.74;ReadPosRankSum=-1.206e+00;SOR=1.000;set=variant	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2624,240,0
chr1	110148974	.	C	T	11559.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.00;DP=575;ExcessHet=4.8226;FS=2.049;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=20.10;ReadPosRankSum=0.853;SOR=0.886;set=variant	GT:AD:DP:GQ:PL	1/1:2,70:72:99:1986,167,0
chr1	110201699	.	T	C	10339.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=2.93;ClippingRankSum=0.00;DP=408;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=55.28;MQRankSum=-2.674e+00;QD=25.40;ReadPosRankSum=-6.050e-01;SOR=0.609;set=variant	GT:AD:DP:GQ:PL	0/1:48,28:76:99:719,0,1199
chr1	110279701	.	C	T	3705.06	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.619e+00;ClippingRankSum=0.00;DP=347;ExcessHet=0.2709;FS=2.169;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=19.50;ReadPosRankSum=-8.670e-01;SOR=0.890;set=variant	GT:AD:DP:GQ:PL	0/1:33,39:72:99:883,0,808
chr1	110466338	.	C	A	13262.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.00;DP=673;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=21.64;ReadPosRankSum=1.09;SOR=0.656;set=variant	GT:AD:DP:GQ:PL	0/1:59,66:125:99:1627,0,1372
chr1	110466466	.	T	C	2973.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.87;ClippingRankSum=0.00;DP=328;ExcessHet=2.5097;FS=2.711;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=16.90;ReadPosRankSum=1.92;SOR=0.497;set=variant	GT:AD:DP:GQ:PL	0/1:26,28:54:99:768,0,713
chr1	110466709	.	T	C	32548.45	PASS	AC=2;AF=1.00;AN=2;DP=1117;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.08;SOR=0.774;set=variant	GT:AD:DP:GQ:PL	1/1:0,182:182:99:5770,545,0
chr1	110466810	.	C	A	5585.61	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.68;ClippingRankSum=0.00;DP=761;ExcessHet=0.8432;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=18.74;ReadPosRankSum=0.378;SOR=0.681;set=variant	GT:AD:DP:GQ:PL	0/1:59,77:136:99:1980,0,1333
chr1	110882444	.	A	G	6440.62	PASS	AC=2;AF=0.889;AN=2;DP=190;ExcessHet=0.1296;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;QD=27.64;SOR=2.289;set=variant	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1484,123,0
chr1	110883569	.	A	T	540.17	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.00;DP=97;ExcessHet=0.8432;FS=3.290;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=16.37;ReadPosRankSum=0.566;SOR=0.405;set=variant	GT:AD:DP:GQ:PL	0/1:8,11:19:99:302,0,203
chr1	110998854	.	G	A	4258.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.00;DP=295;ExcessHet=3.9991;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=16.83;ReadPosRankSum=-3.630e-01;SOR=0.723;set=variant	GT:AD:DP:GQ:PL	0/1:21,24:45:99:610,0,493
chr1	111773568	.	G	C	2518.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.15;ClippingRankSum=0.00;DP=336;ExcessHet=2.5097;FS=5.318;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.19;ReadPosRankSum=0.618;SOR=1.086;set=variant	GT:AD:DP:GQ:PL	0/1:41,26:67:99:672,0,1091
chr1	111783982	.	C	A,T	2567.97	PASS	AC=1,1;AF=0.222,0.333;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.00;DP=210;ExcessHet=1.8603;FS=4.901;MLEAC=4,6;MLEAF=0.222,0.333;MQ=60.00;MQRankSum=0.00;QD=18.21;ReadPosRankSum=0.274;SOR=0.368;set=variant	GT:AD:DP:GQ:PL	1/2:0,17,20:37:99:951,515,464,437,0,377
chr1	111783996	.	A	G	6924.45	PASS	AC=2;AF=1.00;AN=2;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.98;SOR=0.830;set=variant	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1252,120,0
chr1	112042632	.	A	G	14615.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.69;ClippingRankSum=0.00;DP=659;ExcessHet=3.8535;FS=3.104;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.62;ReadPosRankSum=-4.840e-01;SOR=0.926;set=variant	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2865,267,0
chr1	112298829	.	T	C	589.09	PASS	AC=1;AF=0.286;AN=2;BaseQRankSum=2.09;ClippingRankSum=0.00;DP=58;ExcessHet=2.4304;FS=2.782;MLEAC=6;MLEAF=0.429;MQ=55.71;MQRankSum=0.00;QD=23.56;ReadPosRankSum=-1.700e-01;SOR=0.160;set=variant	GT:AD:DP:GQ:PL	0/1:7,7:14:99:239,0,214
chr1	112305406	.	TA	T	1050.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.00;DP=243;ExcessHet=22.7857;FS=2.497;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=6.25;ReadPosRankSum=0.495;SOR=0.906;set=variant2	GT:AD:DP:GQ:PL	0/1:17,9:26:99:119,0,337
chr1	112308953	.	T	C	6264.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=2.70;ClippingRankSum=0.00;DP=476;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=16.06;ReadPosRankSum=0.266;SOR=0.696;set=variant	GT:AD:DP:GQ:PL	0/1:51,48:99:99:1375,0,1364
chr1	112308972	.	G	A	5499.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.240e+00;ClippingRankSum=0.00;DP=494;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.54;ReadPosRankSum=0.255;SOR=0.718;set=variant	GT:AD:DP:GQ:PL	0/1:57,45:102:99:1055,0,1561
chr1	113456546	.	A	T	4351.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=2.39;ClippingRankSum=0.00;DP=212;ExcessHet=8.3924;FS=3.353;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.82;ReadPosRankSum=0.138;SOR=0.393;set=variant	GT:AD:DP:GQ:PL	0/1:19,21:40:99:603,0,559
chr1	114372332	.	TAA	TA,T	3630.10	PASS	AC=1,0;AF=0.444,0.167;AN=2;BaseQRankSum=-7.400e-01;ClippingRankSum=0.00;DP=473;ExcessHet=3.9991;FS=0.000;MLEAC=8,3;MLEAF=0.444,0.167;MQ=62.66;MQRankSum=0.00;QD=9.76;ReadPosRankSum=0.857;SOR=0.658;set=variant2	GT:AD:DP:GQ:PL	0/1:49,10,0:63:31:31,0,1200,211,1172,1387
chr1	114372630	.	G	C	2056.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.44;ClippingRankSum=0.00;DP=321;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=15.58;ReadPosRankSum=-9.700e-02;SOR=0.696;set=variant	GT:AD:DP:GQ:PL	0/1:31,31:62:99:1045,0,1044
chr1	114377568	.	A	G	11760.45	PASS	AC=2;AF=1.00;AN=2;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.08;SOR=1.417;set=variant	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1701,165,0
chr1	115220523	.	C	T	767.64	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=2.70;ClippingRankSum=0.00;DP=154;ExcessHet=4.8226;FS=0.913;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.37;ReadPosRankSum=-2.210e-01;SOR=0.847;set=variant	GT:AD:DP:GQ:PL	0/1:21,6:27:99:148,0,531
chr1	115226990	.	C	CA	118.89	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.40;ClippingRankSum=0.00;DP=234;ExcessHet=5.5175;FS=2.442;MLEAC=3;MLEAF=0.167;MQ=69.28;MQRankSum=0.00;QD=2.12;ReadPosRankSum=0.435;SOR=0.404;set=variant2	GT:AD:DP:GQ:PL	0/1:16,4:20:30:30,0,288
chr1	115280193	.	CA	C	548.08	my_filter	AC=1;AF=0.333;AN=2;BaseQRankSum=-5.370e-01;ClippingRankSum=0.00;DP=415;ExcessHet=10.0405;FS=0.464;MLEAC=6;MLEAF=0.333;MQ=66.73;MQRankSum=0.00;QD=1.96;ReadPosRankSum=0.686;SOR=0.655;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:41,14:59:99:125,0,964
chr1	115576023	.	A	G	7066.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;ClippingRankSum=0.00;DP=265;ExcessHet=3.0103;FS=3.118;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=28.73;ReadPosRankSum=-9.110e-01;SOR=0.315;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1352,132,0
chr1	115829313	.	G	A	7794.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-2.258e+00;ClippingRankSum=0.00;DP=563;ExcessHet=1.8603;FS=1.222;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=18.08;ReadPosRankSum=0.146;SOR=0.617;set=variant	GT:AD:DP:GQ:PL	0/1:57,45:102:99:974,0,1537
chr1	116243868	.	A	G	819.64	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.746e+00;ClippingRankSum=0.00;DP=152;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=11.71;ReadPosRankSum=0.403;SOR=0.631;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:13,11:24:99:0|1:116243868_A_G:305,0,513
chr1	116243877	.	G	A	2643.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.21;ClippingRankSum=0.00;DP=178;ExcessHet=6.2536;FS=2.691;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.39;ReadPosRankSum=-3.300e-02;SOR=0.434;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:12,15:27:99:1|0:116243868_A_G:432,0,451
chr1	116268178	.	GAA	GA,G	342.54	PASS	AC=1,0;AF=0.300,0.100;AN=2;BaseQRankSum=1.24;ClippingRankSum=0.00;DP=59;ExcessHet=2.4304;FS=3.323;MLEAC=3,1;MLEAF=0.300,0.100;MQ=52.62;MQRankSum=0.00;QD=12.23;ReadPosRankSum=0.566;SOR=2.165;set=variant2	GT:AD:DP:GQ:PL	0/1:3,7,0:10:9:92,0,9,99,29,128
chr1	116283343	.	A	G	5468.65	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.00;DP=201;ExcessHet=3.2736;FS=6.100;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=27.34;ReadPosRankSum=1.40;SOR=0.298;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1172,102,0
chr1	116310967	.	T	C	3223.06	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.00;DP=411;ExcessHet=6.2839;FS=1.459;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.43;ReadPosRankSum=-1.380e-01;SOR=0.600;set=variant	GT:AD:DP:GQ:PL	0/1:38,24:62:99:580,0,890
chr1	118565953	.	G	A	7407.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-1.351e+00;ClippingRankSum=0.00;DP=831;ExcessHet=2.5097;FS=0.535;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.13;ReadPosRankSum=0.621;SOR=0.621;set=variant	GT:AD:DP:GQ:PL	0/1:91,55:146:99:1265,0,2354
chr1	118583408	.	G	A	2387.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.00;DP=326;ExcessHet=2.5097;FS=0.516;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.88;ReadPosRankSum=1.40;SOR=0.634;set=variant	GT:AD:DP:GQ:PL	0/1:28,22:50:99:541,0,659
chr1	118644430	.	A	G	11248.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-2.001e+00;ClippingRankSum=0.00;DP=1088;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.32;ReadPosRankSum=-1.092e+00;SOR=0.710;set=variant	GT:AD:DP:GQ:PL	0/1:109,76:185:99:1582,0,2731
chr1	118693217	.	T	C	4470.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.00;DP=419;ExcessHet=6.2536;FS=1.676;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=11.92;ReadPosRankSum=0.041;SOR=0.669;set=variant	GT:AD:DP:GQ:PL	0/1:27,30:57:99:743,0,609
chr1	120057158	.	C	T	4822.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-5.560e-01;ClippingRankSum=0.00;DP=343;ExcessHet=3.9991;FS=0.890;MLEAC=11;MLEAF=0.611;MQ=58.38;MQRankSum=0.587;QD=15.71;ReadPosRankSum=0.861;SOR=0.757;set=variant	GT:AD:DP:GQ:PL	0/1:38,28:66:99:687,0,1002
chr1	120057246	.	C	A	3771.40	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-2.221e+00;ClippingRankSum=0.00;DP=190;ExcessHet=3.8535;FS=3.362;MLEAC=15;MLEAF=0.833;MQ=54.24;MQRankSum=-1.400e-02;QD=19.95;ReadPosRankSum=0.549;SOR=1.052;set=variant	GT:AD:DP:GQ:PL	0/1:20,21:41:99:505,0,557
chr1	120611964	.	G	C	3951.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.00;DP=694;ExcessHet=22.7857;FS=0.573;MLEAC=9;MLEAF=0.500;MQ=54.35;MQRankSum=-2.530e-01;QD=5.70;ReadPosRankSum=0.678;SOR=0.628;set=variant	GT:AD:DP:GQ:PL	0/1:58,30:88:99:661,0,1408
chr1	120612006	.	G	A	5942.12	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-9.310e-01;ClippingRankSum=0.00;DP=894;ExcessHet=15.7960;FS=0.544;MLEAC=8;MLEAF=0.444;MQ=58.90;MQRankSum=-1.508e+00;QD=7.78;ReadPosRankSum=-5.420e-01;SOR=0.655;set=variant	GT:AD:DP:GQ:PL	0/1:76,37:113:99:692,0,1918
chr1	146672906	.	C	T	27119.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.00;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=30.99;ReadPosRankSum=1.58;SOR=0.381;set=variant	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4651,436,0
chr1	146714392	.	G	C	212.52	my_filter	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=33.72;QD=30.09;SOR=2.303;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	146751782	.	A	C	36185.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;ClippingRankSum=0.00;DP=1206;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=30.64;ReadPosRankSum=1.31;SOR=0.308;set=variant	GT:AD:DP:GQ:PL	1/1:1,163:164:99:5069,482,0
chr1	146766122	.	C	G	453.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.058e+00;ClippingRankSum=0.00;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.35;ReadPosRankSum=-7.580e-01;SOR=0.650;set=variant	GT:AD:DP:GQ:PL	0/1:19,21:40:99:488,0,519
chr1	146767149	.	G	T	17896.45	PASS	AC=2;AF=1.00;AN=2;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.96;SOR=1.226;set=variant	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3123,303,0
chr1	147091720	.	C	T	1057.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-5.917e+00;ClippingRankSum=0.00;DP=450;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.38;ReadPosRankSum=-1.005e+00;SOR=0.470;set=variant	GT:AD:DP:GQ:PL	0/1:53,40:93:99:1092,0,1780
chr1	150483355	.	C	T	286.96	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-2.681e+00;ClippingRankSum=0.00;DP=72;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.57;ReadPosRankSum=-6.500e-01;SOR=0.384;set=variant	GT:AD:DP:GQ:PL	0/1:7,9:16:99:265,0,228
chr1	150484987	.	G	A	1392.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.10;ClippingRankSum=0.00;DP=423;ExcessHet=3.2736;FS=1.250;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.76;ReadPosRankSum=-6.850e-01;SOR=0.643;set=variant	GT:AD:DP:GQ:PL	0/1:46,36:82:99:814,0,1059
chr1	150526044	.	G	C	9058.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.00;DP=556;ExcessHet=3.9991;FS=0.546;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.34;ReadPosRankSum=-1.124e+00;SOR=0.659;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:54,40:94:99:.:.:1050,0,1274
chr1	150531008	.	T	C	14141.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.91;ClippingRankSum=0.00;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.83;ReadPosRankSum=-7.770e-01;SOR=0.724;set=variant	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2544,261,0
chr1	150531050	.	G	A	20536.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.00;DP=932;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.11;ReadPosRankSum=0.495;SOR=0.724;set=variant	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4166,456,0
chr1	150531170	.	C	T	11940.45	PASS	AC=2;AF=1.00;AN=2;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.19;SOR=1.457;set=variant	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2120,219,0
chr1	150598965	.	G	A	267.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.110e-01;ClippingRankSum=0.00;DP=295;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=7.44;ReadPosRankSum=-1.336e+00;SOR=1.190;set=variant	GT:AD:DP:GQ:PL	0/1:22,14:36:99:302,0,550
chr1	150771703	.	T	C	7565.45	PASS	AC=2;AF=1.00;AN=2;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.02;SOR=0.754;set=variant	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1124,120,0
chr1	151316161	.	G	A	10815.45	PASS	AC=2;AF=1.00;AN=2;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.76;SOR=0.967;set=variant	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1823,192,0
chr1	151380725	.	GA	G	287.38	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.160e+00;ClippingRankSum=0.00;DP=283;ExcessHet=5.5175;FS=0.794;MLEAC=3;MLEAF=0.167;MQ=66.78;MQRankSum=0.00;QD=2.87;ReadPosRankSum=0.417;SOR=0.566;set=variant2	GT:AD:DP:GQ:PL	0/1:40,6:46:16:16,0,932
chr1	151396037	.	A	C	1804.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.571e+00;ClippingRankSum=0.00;DP=274;ExcessHet=6.2839;FS=2.004;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.00;ReadPosRankSum=-1.759e+00;SOR=0.541;set=variant	GT:AD:DP:GQ:PL	0/1:20,27:47:99:674,0,565
chr1	152484129	.	G	A	6543.12	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-4.680e-01;ClippingRankSum=0.00;DP=625;ExcessHet=15.7960;FS=0.521;MLEAC=10;MLEAF=0.556;MQ=59.96;MQRankSum=0.00;QD=11.07;ReadPosRankSum=0.217;SOR=0.637;set=variant	GT:AD:DP:GQ:PL	0/1:61,48:109:99:1049,0,1594
chr1	152975495	.	G	A	1614.05	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.981e+00;ClippingRankSum=0.00;DP=96;ExcessHet=1.2191;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=24.83;ReadPosRankSum=1.69;SOR=0.779;set=variant	GT:AD:DP:GQ:PL	0/1:6,11:17:99:295,0,194
chr1	152975763	.	C	A	1518.25	PASS	AC=1;AF=0.375;AN=2;BaseQRankSum=-2.838e+00;ClippingRankSum=0.00;DP=121;ExcessHet=0.9154;FS=1.361;MLEAC=7;MLEAF=0.438;MQ=49.54;MQRankSum=0.524;QD=25.73;ReadPosRankSum=-8.600e-02;SOR=1.201;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:8,8:16:99:0|1:152975763_C_A:240,0,256
chr1	152975829	.	A	G	1179.16	PASS	AC=1;AF=0.357;AN=2;BaseQRankSum=-8.570e-01;ClippingRankSum=0.00;DP=96;ExcessHet=0.3421;FS=1.280;MLEAC=6;MLEAF=0.429;MQ=55.18;MQRankSum=0.00;QD=26.80;ReadPosRankSum=-1.769e+00;SOR=1.143;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,5:19:99:0|1:152975763_C_A:145,0,418
chr1	153233488	.	C	CGGCGGT	3039.59	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.00;DP=413;ExcessHet=4.8226;FS=2.611;MLEAC=4;MLEAF=0.222;MQ=59.95;MQRankSum=0.00;QD=16.70;ReadPosRankSum=0.647;SOR=0.503;set=variant2	GT:AD:DP:GQ:PGT:PID:PL	0/1:36,17:53:99:.:.:626,0,2570
chr1	153233701	.	A	C	1393.39	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.28;ClippingRankSum=0.00;DP=82;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=24.02;ReadPosRankSum=0.478;SOR=0.649;set=variant	GT:AD:DP:GQ:PL	0/1:7,7:14:99:227,0,205
chr1	153233991	.	A	ACTCTGGCGGCGG	10385.58	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.00;DP=238;ExcessHet=3.2736;FS=0.855;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=29.43;ReadPosRankSum=-8.960e-01;SOR=0.567;set=variant2	GT:AD:DP:GQ:PL	1/1:0,28:28:99:1455,99,0
chr1	153234295	.	G	A	4867.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-3.368e+00;ClippingRankSum=0.00;DP=634;ExcessHet=4.8226;FS=4.460;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.58;ReadPosRankSum=-3.040e-01;SOR=0.914;set=variant	GT:AD:DP:GQ:PL	0/1:51,55:106:99:1332,0,1404
chr1	153588340	.	C	T	3850.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-1.129e+00;ClippingRankSum=0.00;DP=578;ExcessHet=2.5097;FS=1.393;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.75;ReadPosRankSum=0.272;SOR=0.601;set=variant	GT:AD:DP:GQ:PL	0/1:40,29:69:99:568,0,935
chr1	154401679	.	G	A	1101.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=2.73;ClippingRankSum=0.00;DP=410;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.91;ReadPosRankSum=0.324;SOR=0.441;set=variant	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1136,0,1263
chr1	154426970	.	A	C	10420.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.00;DP=451;ExcessHet=3.8535;FS=1.572;MLEAC=15;MLEAF=0.833;MQ=60.02;MQRankSum=0.00;QD=23.26;ReadPosRankSum=-4.940e-01;SOR=0.823;set=variant	GT:AD:DP:GQ:PL	0/1:26,47:73:99:1086,0,531
chr1	154557685	.	C	T	4744.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-1.478e+00;ClippingRankSum=0.00;DP=228;ExcessHet=3.8535;FS=2.925;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.57;ReadPosRankSum=0.616;SOR=0.504;set=variant	GT:AD:DP:GQ:PL	0/1:22,23:45:99:601,0,595
chr1	154573967	.	T	C	21895.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=3.25;ClippingRankSum=0.00;DP=722;ExcessHet=3.0103;FS=3.906;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=31.01;ReadPosRankSum=2.42;SOR=1.386;set=variant	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3890,325,0
chr1	154574820	.	T	C	9808.45	PASS	AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.45;SOR=1.366;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1953,162,0
chr1	154575040	.	C	T	27628.45	PASS	AC=2;AF=1.00;AN=2;DP=972;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.36;SOR=1.620;set=variant	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4817,483,0
chr1	154580458	.	C	A	2631.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.429e+00;ClippingRankSum=0.00;DP=859;ExcessHet=3.2736;FS=1.594;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.49;ReadPosRankSum=1.01;SOR=0.593;set=variant	GT:AD:DP:GQ:PL	0/1:58,59:117:99:1238,0,1345
chr1	154744807	.	C	G	941.51	PASS	AC=1;AF=0.375;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.00;DP=58;ExcessHet=0.7136;FS=0.000;MLEAC=7;MLEAF=0.438;MQ=57.65;MQRankSum=0.00;QD=26.90;ReadPosRankSum=1.60;SOR=2.115;set=variant	GT:AD:DP:GQ:PL	0/1:4,8:12:99:292,0,130
chr1	154744852	.	A	G	1332.54	PASS	AC=2;AF=0.900;AN=2;BaseQRankSum=2.37;ClippingRankSum=0.00;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=9;MLEAF=0.900;MQ=57.21;MQRankSum=0.00;QD=33.31;ReadPosRankSum=0.022;SOR=3.611;set=variant	GT:AD:DP:GQ:PL	1/1:0,12:12:36:476,36,0
chr1	154842199	.	G	GGCTGCTGCTGCT,GGCTGCTGCTGCTGCT,GGCTGCTGCT,GGCTGCTGCTGCTGCTGCT	6155.87	PASS	AC=1,1,0,0;AF=0.056,0.333,0.389,0.167;AN=2;BaseQRankSum=-7.380e-01;ClippingRankSum=0.00;DP=184;ExcessHet=3.0103;FS=3.106;MLEAC=1,5,7,3;MLEAF=0.056,0.278,0.389,0.167;MQ=59.91;MQRankSum=0.00;QD=34.04;ReadPosRankSum=-4.020e-01;SOR=0.457;set=variant2	GT:AD:DP:GQ:PL	1/2:0,0,5,8,0:21:99:680,694,721,271,298,251,155,182,0,134,694,721,298,182,721
chr1	155161794	.	C	T	752.20	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-2.655e+00;ClippingRankSum=0.00;DP=87;ExcessHet=8.3924;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.75;ReadPosRankSum=-1.080e-01;SOR=0.726;set=variant	GT:AD:DP:GQ:PL	0/1:12,11:23:99:294,0,423
chr1	155162067	.	C	T	7828.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.00;DP=613;ExcessHet=9.7754;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=13.83;ReadPosRankSum=-1.760e-01;SOR=0.700;set=variant	GT:AD:DP:GQ:PL	0/1:51,48:99:99:1145,0,1266
chr1	155260383	.	G	T	5286.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.00;DP=573;ExcessHet=9.7754;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=10.25;ReadPosRankSum=-2.160e-01;SOR=0.684;set=variant	GT:AD:DP:GQ:PL	0/1:54,35:89:99:710,0,1288
chr1	155735012	.	T	C	14115.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=3.11;ClippingRankSum=0.00;DP=539;ExcessHet=0.8432;FS=2.587;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=28.87;ReadPosRankSum=0.988;SOR=0.970;set=variant	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2897,235,0
chr1	155837865	.	G	C	28090.45	PASS	AC=2;AF=1.00;AN=2;DP=928;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.87;SOR=0.854;set=variant	GT:AD:DP:GQ:PL	1/1:0,158:158:99:5006,474,0
chr1	155838267	.	T	C	20461.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.420e-01;ClippingRankSum=0.00;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=30.82;ReadPosRankSum=-6.530e-01;SOR=0.507;set=variant	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3030,279,0
chr1	156146218	.	C	T	1502.74	PASS	AC=2;AF=0.750;AN=2;BaseQRankSum=1.65;ClippingRankSum=0.00;DP=59;ExcessHet=0.9691;FS=12.182;MLEAC=12;MLEAF=0.750;MQ=58.90;MQRankSum=0.00;QD=29.47;ReadPosRankSum=-1.260e-01;SOR=4.453;set=variant	GT:AD:DP:GQ:PL	1/1:0,10:10:30:382,30,0
chr1	156146384	.	G	A	895.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.00;DP=386;ExcessHet=3.0103;FS=3.968;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=9.74;ReadPosRankSum=0.431;SOR=1.153;set=variant	GT:AD:DP:GQ:PL	0/1:51,41:92:99:930,0,1231
chr1	156499969	.	T	C	14958.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.49;ClippingRankSum=0.00;DP=1158;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.68;ReadPosRankSum=0.246;SOR=0.723;set=variant	GT:AD:DP:GQ:PL	0/1:100,104:204:99:2594,0,2204
chr1	156518379	.	G	A	9087.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.169e+00;ClippingRankSum=0.00;DP=803;ExcessHet=3.9991;FS=1.099;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.47;ReadPosRankSum=-7.240e-01;SOR=0.618;set=variant	GT:AD:DP:GQ:PL	0/1:74,83:157:99:1996,0,1890
chr1	156526387	.	C	G	14036.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.00;DP=1026;ExcessHet=3.9991;FS=0.535;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=15.37;ReadPosRankSum=-4.740e-01;SOR=0.760;set=variant	GT:AD:DP:GQ:PL	0/1:101,71:172:99:1589,0,2421
chr1	156526444	.	T	C	32796.45	PASS	AC=2;AF=1.00;AN=2;DP=1109;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.57;SOR=1.041;set=variant	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4892,468,0
chr1	156532977	.	T	C	35828.45	PASS	AC=2;AF=1.00;AN=2;DP=1238;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.44;SOR=0.824;set=variant	GT:AD:DP:GQ:PL	1/1:0,176:176:99:5373,528,0
chr1	156536221	.	G	C	13869.45	PASS	AC=2;AF=1.00;AN=2;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.38;SOR=1.068;set=variant	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2254,225,0
chr1	156536251	.	T	C	17893.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;ClippingRankSum=0.00;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=28.86;ReadPosRankSum=2.25;SOR=0.753;set=variant	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2808,291,0
chr1	156785617	.	G	A	8591.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=1.10;ClippingRankSum=0.00;DP=534;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=19.61;ReadPosRankSum=-7.860e-01;SOR=0.659;set=variant	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1705,183,0
chr1	156846233	.	G	A	1934.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.099e+00;ClippingRankSum=0.00;DP=277;ExcessHet=4.8226;FS=3.002;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=13.16;ReadPosRankSum=0.898;SOR=0.472;set=variant	GT:AD:DP:GQ:PL	0/1:28,28:56:99:695,0,781
chr1	156848909	.	CA	C	275.90	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.080e-01;ClippingRankSum=0.00;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=18.39;ReadPosRankSum=0.459;SOR=1.112;set=variant2	GT:AD:DP:GQ:PL	0/1:6,9:15:99:319,0,184
chr1	156873727	.	G	A	1654.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.790e+00;ClippingRankSum=0.00;DP=470;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.19;ReadPosRankSum=-1.600e-02;SOR=0.659;set=variant	GT:AD:DP:GQ:PL	0/1:41,27:68:99:581,0,991
chr1	156875107	.	C	A	3813.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-8.960e-01;ClippingRankSum=0.00;DP=356;ExcessHet=1.8603;FS=3.263;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=19.45;ReadPosRankSum=1.59;SOR=0.948;set=variant	GT:AD:DP:GQ:PL	0/1:43,21:64:99:752,0,2871
chr1	156877457	.	T	C	18159.45	PASS	AC=2;AF=1.00;AN=2;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.55;SOR=0.706;set=variant	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2708,273,0
chr1	156877797	.	C	A	5251.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-9.560e-01;ClippingRankSum=0.00;DP=660;ExcessHet=6.2839;FS=1.112;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.69;ReadPosRankSum=-2.370e-01;SOR=0.613;set=variant	GT:AD:DP:GQ:PL	0/1:68,53:121:99:1295,0,1757
chr1	156878473	.	C	T	1469.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.838e+00;ClippingRankSum=0.00;DP=635;ExcessHet=3.0103;FS=4.085;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.81;ReadPosRankSum=0.284;SOR=1.055;set=variant	GT:AD:DP:GQ:PL	0/1:72,64:136:99:1504,0,1861
chr1	156878531	.	T	C	6598.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.00;DP=826;ExcessHet=6.2839;FS=2.444;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.18;ReadPosRankSum=-8.180e-01;SOR=0.663;set=variant	GT:AD:DP:GQ:PL	0/1:69,85:154:99:2091,0,1574
chr1	156878737	.	T	C	5982.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.00;DP=711;ExcessHet=6.2839;FS=4.072;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.92;ReadPosRankSum=0.535;SOR=0.454;set=variant	GT:AD:DP:GQ:PL	0/1:67,44:111:99:1070,0,1544
chr1	156879580	.	C	T	5923.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.270e-01;ClippingRankSum=0.00;DP=981;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.94;ReadPosRankSum=-2.700e-01;SOR=0.673;set=variant	GT:AD:DP:GQ:PL	0/1:129,92:221:99:2038,0,3265
chr1	156882996	.	G	C	2140.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.04;ClippingRankSum=0.00;DP=437;ExcessHet=3.8535;FS=3.288;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.15;ReadPosRankSum=0.345;SOR=0.490;set=variant	GT:AD:DP:GQ:PL	0/1:34,30:64:99:770,0,804
chr1	156883215	.	C	A	2304.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-6.630e-01;ClippingRankSum=0.00;DP=457;ExcessHet=3.2736;FS=18.823;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.88;ReadPosRankSum=0.870;SOR=1.678;set=variant	GT:AD:DP:GQ:PL	0/1:55,53:108:99:1342,0,1391
chr1	156884584	.	C	T	1154.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.00;DP=372;ExcessHet=3.2736;FS=1.641;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.79;ReadPosRankSum=0.227;SOR=0.925;set=variant	GT:AD:DP:GQ:PL	0/1:35,31:66:99:689,0,809
chr1	156907031	.	C	T	1220.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-5.960e-01;ClippingRankSum=0.00;DP=329;ExcessHet=3.2736;FS=0.734;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.74;ReadPosRankSum=0.064;SOR=0.846;set=variant	GT:AD:DP:GQ:PL	0/1:25,26:51:99:609,0,731
chr1	156907081	.	T	C	8336.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.00;DP=551;ExcessHet=8.3924;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=15.16;ReadPosRankSum=0.353;SOR=0.694;set=variant	GT:AD:DP:GQ:PL	0/1:39,34:73:99:827,0,921
chr1	156909695	.	G	A	1879.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.018e+00;ClippingRankSum=0.00;DP=543;ExcessHet=3.2736;FS=3.360;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.69;ReadPosRankSum=1.70;SOR=0.497;set=variant	GT:AD:DP:GQ:PL	0/1:53,46:99:99:1100,0,1359
chr1	156911718	.	C	T	611.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.405e+00;ClippingRankSum=0.00;DP=317;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.20;ReadPosRankSum=2.26;SOR=0.855;set=variant	GT:AD:DP:GQ:PL	0/1:32,28:60:99:646,0,894
chr1	156939067	.	G	A	1195.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.62;ClippingRankSum=0.00;DP=361;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.39;ReadPosRankSum=-3.380e-01;SOR=0.655;set=variant	GT:AD:DP:GQ:PL	0/1:32,27:59:99:627,0,710
chr1	158324425	.	A	G	8196.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.00;DP=740;ExcessHet=3.4788;FS=6.166;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=13.18;ReadPosRankSum=-2.060e-01;SOR=1.088;set=variant	GT:AD:DP:GQ:PL	0/1:88,51:139:99:1211,0,2353
chr1	158582646	.	T	C	5278.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=1.04;ClippingRankSum=0.00;DP=285;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=19.13;ReadPosRankSum=1.86;SOR=0.685;set=variant	GT:AD:DP:GQ:PL	0/1:22,17:39:99:397,0,552
chr1	158584091	.	A	G	2483.44	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=2.30;ClippingRankSum=0.00;DP=109;ExcessHet=2.1695;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.33;MQRankSum=0.00;QD=25.09;ReadPosRankSum=0.107;SOR=0.630;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:19,8:27:99:.:.:199,0,795
chr1	158584103	.	G	GA,GAA	2623.21	PASS	AC=1,0;AF=0.333,0.333;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.00;DP=121;ExcessHet=3.3579;FS=2.099;MLEAC=6,5;MLEAF=0.333,0.278;MQ=60.43;MQRankSum=0.126;QD=30.50;ReadPosRankSum=1.02;SOR=0.689;set=variant2	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,8,4:26:67:.:.:310,0,230,67,194,431
chr1	158607935	.	T	G	11577.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;ClippingRankSum=0.00;DP=881;ExcessHet=3.4788;FS=0.528;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.54;ReadPosRankSum=0.501;SOR=0.656;set=variant	GT:AD:DP:GQ:PL	0/1:88,89:177:99:2101,0,1977
chr1	158612236	.	A	G	5084.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.00;DP=251;ExcessHet=4.8226;FS=1.204;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=20.84;ReadPosRankSum=0.897;SOR=0.843;set=variant	GT:AD:DP:GQ:PL	0/1:19,17:36:99:428,0,453
chr1	158619728	.	A	C	23420.45	PASS	AC=2;AF=1.00;AN=2;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.06;SOR=0.720;set=variant	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4016,381,0
chr1	158626378	.	C	T	3262.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;ClippingRankSum=0.00;DP=291;ExcessHet=3.4788;FS=1.074;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=15.10;ReadPosRankSum=-1.010e-01;SOR=0.641;set=variant	GT:AD:DP:GQ:PL	0/1:20,17:37:99:375,0,472
chr1	158631171	.	A	C	3667.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=335;ExcessHet=3.4788;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.38;ReadPosRankSum=0.404;SOR=0.720;set=variant	GT:AD:DP:GQ:PL	0/1:33,18:51:99:390,0,763
chr1	158647495	.	A	T	10626.45	PASS	AC=2;AF=1.00;AN=2;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.34;SOR=0.799;set=variant	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1997,207,0
chr1	158647522	.	A	G	7791.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-2.550e-01;ClippingRankSum=0.00;DP=453;ExcessHet=4.8226;FS=0.550;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=17.24;ReadPosRankSum=0.510;SOR=0.757;set=variant	GT:AD:DP:GQ:PL	0/1:48,34:82:99:817,0,1064
chr1	158647631	.	T	A	3273.46	PASS	AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.88;SOR=2.899;set=variant	GT:AD:DP:GQ:PL	1/1:0,24:24:72:721,72,0
chr1	158655036	.	G	A	14277.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.00;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=27.51;ReadPosRankSum=0.343;SOR=0.745;set=variant	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2165,234,0
chr1	158656281	.	T	C	9777.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.930e-01;ClippingRankSum=0.00;DP=310;ExcessHet=3.0103;FS=3.082;MLEAC=18;MLEAF=1.00;MQ=60.31;MQRankSum=-3.417e+00;QD=32.06;ReadPosRankSum=-5.510e-01;SOR=0.286;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1726,150,0
chr1	160000435	.	A	T	313.28	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.00;DP=85;ExcessHet=0.4576;FS=10.792;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=17.40;ReadPosRankSum=-3.490e-01;SOR=3.611;set=variant	GT:AD:DP:GQ:PL	0/1:6,6:12:99:178,0,177
chr1	160098543	.	G	A	831.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.00;DP=312;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=58.57;MQRankSum=-2.480e-01;QD=12.05;ReadPosRankSum=-3.480e-01;SOR=0.599;set=variant	GT:AD:DP:GQ:PL	0/1:23,26:49:99:637,0,539
chr1	160100264	.	C	T	455.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=2.21;ClippingRankSum=0.00;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=7.86;ReadPosRankSum=0.833;SOR=0.628;set=variant	GT:AD:DP:GQ:PL	0/1:37,21:58:99:490,0,895
chr1	160246989	.	CT	CTT,C	616.05	my_filter	AC=1,0;AF=0.333,0.167;AN=2;BaseQRankSum=-4.370e-01;ClippingRankSum=0.00;DP=519;ExcessHet=22.7857;FS=3.101;MLEAC=5,3;MLEAF=0.278,0.167;MQ=60.00;MQRankSum=0.00;QD=1.68;ReadPosRankSum=0.317;SOR=0.660;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:47,11,15:73:99:169,176,1516,0,832,1020
chr1	160247185	.	G	C	12678.47	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.00;DP=602;ExcessHet=3.9991;FS=0.640;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=22.84;ReadPosRankSum=-4.560e-01;SOR=0.851;set=variant	GT:AD:DP:GQ:PL	1/1:1,109:110:99:3704,292,0
chr1	160393905	.	A	G	5721.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.00;DP=486;ExcessHet=3.4788;FS=0.525;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=13.99;ReadPosRankSum=0.582;SOR=0.639;set=variant	GT:AD:DP:GQ:PL	0/1:41,33:74:99:775,0,945
chr1	160394937	.	A	C	1580.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.66;ClippingRankSum=0.00;DP=288;ExcessHet=6.2839;FS=1.325;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=9.52;ReadPosRankSum=-5.710e-01;SOR=0.812;set=variant	GT:AD:DP:GQ:PL	0/1:29,12:41:99:298,0,774
chr1	160395003	.	G	A	3348.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-5.000e-03;ClippingRankSum=0.00;DP=530;ExcessHet=6.2839;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=8.88;ReadPosRankSum=0.495;SOR=0.672;set=variant	GT:AD:DP:GQ:PL	0/1:51,28:79:99:599,0,1334
chr1	161049509	.	G	T	1114.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-2.851e+00;ClippingRankSum=0.00;DP=327;ExcessHet=3.2736;FS=2.932;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.86;ReadPosRankSum=0.748;SOR=0.424;set=variant	GT:AD:DP:GQ:PL	0/1:30,32:62:99:751,0,835
chr1	161139738	.	G	A	1473.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.04;ClippingRankSum=0.00;DP=403;ExcessHet=3.2736;FS=1.314;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.23;ReadPosRankSum=0.837;SOR=0.708;set=variant	GT:AD:DP:GQ:PL	0/1:36,27:63:99:533,0,826
chr1	161172233	.	C	A	2367.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.00;DP=896;ExcessHet=3.2736;FS=0.943;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.90;ReadPosRankSum=0.440;SOR=0.759;set=variant	GT:AD:DP:GQ:PL	0/1:80,68:148:99:1475,0,2028
chr1	161182208	.	C	G	23.93	my_filter	AC=1;AF=0.056;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.00;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=0.58;ReadPosRankSum=2.13;SOR=0.641;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:35,6:41:58:58,0,911
chr1	161192316	.	G	A	1447.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.420e+00;ClippingRankSum=0.00;DP=394;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.41;ReadPosRankSum=0.474;SOR=0.719;set=variant	GT:AD:DP:GQ:PL	0/1:38,29:67:99:631,0,1005
chr1	161192845	.	CCACACACACACA	CCA,CCACACA,C	2940.08	PASS	AC=1,1,0;AF=0.111,0.333,0.111;AN=2;BaseQRankSum=1.59;ClippingRankSum=0.00;DP=284;ExcessHet=3.4242;FS=9.720;MLEAC=2,7,2;MLEAF=0.111,0.389,0.111;MQ=59.86;MQRankSum=0.765;QD=29.00;ReadPosRankSum=1.98;SOR=2.864;set=variant2	GT:AD:DP:GQ:PL	1/2:0,10,13,4:27:99:1021,546,502,446,0,399,749,412,186,708
chr1	161202605	.	G	A	1149.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.24;ClippingRankSum=0.00;DP=298;ExcessHet=4.8226;FS=0.642;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=8.21;ReadPosRankSum=1.11;SOR=0.782;set=variant	GT:AD:DP:GQ:PL	0/1:24,18:42:99:391,0,572
chr1	161479745	.	A	G	4958.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=2.17;ClippingRankSum=0.00;DP=388;ExcessHet=6.2536;FS=3.529;MLEAC=8;MLEAF=0.444;MQ=59.52;MQRankSum=-6.120e-01;QD=15.84;ReadPosRankSum=1.17;SOR=0.926;set=variant	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1066,0,863
chr1	161487863	.	C	T	4357.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.116e+00;ClippingRankSum=0.00;DP=652;ExcessHet=4.8226;FS=0.520;MLEAC=4;MLEAF=0.222;MQ=47.58;MQRankSum=-3.450e-01;QD=10.38;ReadPosRankSum=0.015;SOR=0.747;set=variant	GT:AD:DP:GQ:PL	0/1:79,66:145:99:1415,0,1981
chr1	161514542	.	A	C	2087.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=3.00;ClippingRankSum=0.00;DP=253;ExcessHet=2.5097;FS=5.854;MLEAC=6;MLEAF=0.333;MQ=53.57;MQRankSum=-3.005e+00;QD=13.65;ReadPosRankSum=0.448;SOR=1.022;set=variant	GT:AD:DP:GQ:PL	0/1:27,21:48:99:570,0,624
chr1	161518214	.	T	C	1493.63	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.08;ClippingRankSum=0.00;DP=231;ExcessHet=7.6101;FS=1.850;MLEAC=6;MLEAF=0.333;MQ=41.70;MQRankSum=-1.403e+00;QD=9.16;ReadPosRankSum=1.33;SOR=0.550;set=variant	GT:AD:DP:GQ:PL	0/1:34,11:45:99:172,0,850
chr1	161518336	.	C	T	902.19	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-6.430e-01;ClippingRankSum=0.00;DP=183;ExcessHet=10.0405;FS=0.729;MLEAC=7;MLEAF=0.389;MQ=52.55;MQRankSum=-2.445e+00;QD=6.89;ReadPosRankSum=0.679;SOR=0.555;set=variant	GT:AD:DP:GQ:PL	0/1:25,12:37:99:278,0,791
chr1	161599693	.	T	C	1655.34	my_filter	AC=1;AF=0.929;AN=2;BaseQRankSum=-1.040e-01;ClippingRankSum=0.00;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=13;MLEAF=0.929;MQ=35.51;MQRankSum=-4.180e-01;QD=29.56;ReadPosRankSum=-6.670e-01;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:2,11:13:26:288,0,26
chr1	161600995	.	C	T	2078.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-2.063e+00;ClippingRankSum=0.00;DP=182;ExcessHet=6.2536;FS=1.684;MLEAC=8;MLEAF=0.444;MQ=59.86;MQRankSum=0.00;QD=14.43;ReadPosRankSum=-2.920e-01;SOR=0.509;set=variant	GT:AD:DP:GQ:PL	0/1:27,14:41:99:317,0,885
chr1	161641237	.	G	A	491.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.609e+00;ClippingRankSum=0.00;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=53.96;MQRankSum=-4.875e+00;QD=7.93;ReadPosRankSum=0.922;SOR=0.749;set=variant	GT:AD:DP:GQ:PL	0/1:38,24:62:99:526,0,1012
chr1	161641384	.	G	A	625.38	my_filter	AC=1;AF=0.167;AN=2;BaseQRankSum=-4.750e-01;ClippingRankSum=0.00;DP=114;ExcessHet=3.8535;FS=1.191;MLEAC=3;MLEAF=0.167;MQ=39.44;MQRankSum=-1.517e+00;QD=13.31;ReadPosRankSum=1.62;SOR=0.449;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:14,8:22:99:206,0,411
chr1	161748056	.	C	T	4833.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.00;DP=545;ExcessHet=6.2536;FS=1.107;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=11.03;ReadPosRankSum=0.875;SOR=0.822;set=variant	GT:AD:DP:GQ:PL	0/1:59,39:98:99:860,0,1418
chr1	161753802	.	T	C	2929.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.60;ClippingRankSum=0.00;DP=320;ExcessHet=6.2536;FS=0.971;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=11.72;ReadPosRankSum=0.930;SOR=0.626;set=variant	GT:AD:DP:GQ:PL	0/1:25,30:55:99:818,0,584
chr1	161753841	.	G	A	3662.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.00;DP=410;ExcessHet=6.2536;FS=0.396;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=10.77;ReadPosRankSum=0.00;SOR=0.653;set=variant	GT:AD:DP:GQ:PL	0/1:31,31:62:99:725,0,728
chr1	161761276	.	G	C	2729.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.00;DP=312;ExcessHet=6.2536;FS=3.557;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=11.28;ReadPosRankSum=0.252;SOR=0.922;set=variant	GT:AD:DP:GQ:PL	0/1:37,20:57:99:453,0,951
chr1	161761312	.	C	T	1791.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-7.060e-01;ClippingRankSum=0.00;DP=203;ExcessHet=6.2536;FS=1.391;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=12.98;ReadPosRankSum=1.08;SOR=0.836;set=variant	GT:AD:DP:GQ:PL	0/1:15,15:30:99:382,0,385
chr1	161823011	.	T	A	3303.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.00;DP=198;ExcessHet=1.8603;FS=3.667;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=21.45;ReadPosRankSum=0.738;SOR=0.425;set=variant	GT:AD:DP:GQ:PL	0/1:15,25:40:99:628,0,324
chr1	161928327	.	A	G	13606.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;ClippingRankSum=0.00;DP=951;ExcessHet=3.4788;FS=1.145;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=15.62;ReadPosRankSum=-1.010e-01;SOR=0.819;set=variant	GT:AD:DP:GQ:PL	0/1:94,81:175:99:1818,0,2243
chr1	162313735	.	C	T	6357.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.00;DP=543;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=15.32;ReadPosRankSum=-9.320e-01;SOR=0.743;set=variant	GT:AD:DP:GQ:PL	0/1:47,30:77:99:633,0,1091
chr1	165376043	.	T	C	8091.34	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-6.650e-01;ClippingRankSum=0.00;DP=332;ExcessHet=0.4012;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=29.21;ReadPosRankSum=-2.210e-01;SOR=0.845;set=variant	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1239,120,0
chr1	165377552	.	G	A	6894.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-9.410e-01;ClippingRankSum=0.00;DP=530;ExcessHet=6.2536;FS=1.153;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.70;ReadPosRankSum=0.573;SOR=0.590;set=variant	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1937,207,0
chr1	165389129	.	G	A	1506.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-3.510e-01;ClippingRankSum=0.00;DP=466;ExcessHet=3.8535;FS=1.133;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=7.61;ReadPosRankSum=0.260;SOR=0.788;set=variant	GT:AD:DP:GQ:PL	0/1:65,44:109:99:901,0,1555
chr1	165693863	.	G	T	8796.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.570e+00;ClippingRankSum=0.00;DP=583;ExcessHet=3.9991;FS=3.393;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=16.23;ReadPosRankSum=-7.240e-01;SOR=0.963;set=variant	GT:AD:DP:GQ:PL	0/1:94,53:147:99:1215,0,2494
chr1	165694897	.	T	C	32085.91	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=-8.730e-01;ClippingRankSum=0.00;DP=972;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=33.35;ReadPosRankSum=-1.039e+00;SOR=0.572;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:98,85:183:99:0|1:165694897_T_C:2931,0,4934
chr1	165694918	.	G	C	20589.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.00;DP=1044;ExcessHet=3.9991;FS=1.789;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.92;ReadPosRankSum=0.961;SOR=0.585;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:106,82:188:99:0|1:165694897_T_C:2872,0,5141
chr1	165695726	.	T	C	8101.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=1.16;ClippingRankSum=0.00;DP=511;ExcessHet=3.9991;FS=3.397;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.45;ReadPosRankSum=1.89;SOR=0.679;set=variant	GT:AD:DP:GQ:PL	0/1:34,50:84:99:1426,0,815
chr1	165695855	.	C	T	8953.91	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=-4.836e+00;ClippingRankSum=0.00;DP=316;ExcessHet=3.0103;FS=11.881;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.61;ReadPosRankSum=-1.264e+00;SOR=0.158;set=variant	GT:AD:DP:GQ:PL	0/1:21,39:60:99:1092,0,629
chr1	165712555	.	GA	G,GAA	542.21	my_filter	AC=1,0;AF=0.278,0.111;AN=2;BaseQRankSum=-2.490e-01;ClippingRankSum=0.00;DP=450;ExcessHet=17.2937;FS=4.691;MLEAC=4,2;MLEAF=0.222,0.111;MQ=60.00;MQRankSum=0.00;QD=1.92;ReadPosRankSum=0.226;SOR=0.800;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:21,14,9:52:21:127,0,728,21,272,553
chr1	167817639	.	A	G	10318.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.30;ClippingRankSum=0.00;DP=385;ExcessHet=3.0103;FS=0.944;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.01;ReadPosRankSum=0.402;SOR=0.726;set=variant	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1395,144,0
chr1	167825485	.	T	C	3135.64	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.00;DP=155;ExcessHet=4.8226;FS=1.532;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=20.77;ReadPosRankSum=0.439;SOR=0.562;set=variant	GT:AD:DP:GQ:PL	0/1:20,17:37:99:379,0,507
chr1	167871297	.	GA	G,GAA	2446.09	PASS	AC=1,0;AF=0.389,0.167;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.00;DP=382;ExcessHet=13.4916;FS=0.815;MLEAC=5,3;MLEAF=0.278,0.167;MQ=60.00;MQRankSum=0.00;QD=7.26;ReadPosRankSum=0.589;SOR=0.628;set=variant2	GT:AD:DP:GQ:PL	0/1:24,27,0:51:99:471,0,422,541,502,1043
chr1	169498835	.	G	A	1264.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=2.31;ClippingRankSum=0.00;DP=301;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=12.40;ReadPosRankSum=0.538;SOR=0.598;set=variant	GT:AD:DP:GQ:PL	0/1:22,21:43:99:557,0,567
chr1	169498975	.	T	C	6377.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=3.42;ClippingRankSum=0.00;DP=413;ExcessHet=6.2536;FS=26.887;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.28;ReadPosRankSum=0.370;SOR=1.592;set=variant	GT:AD:DP:GQ:PL	0/1:34,31:65:99:932,0,803
chr1	169500210	.	T	C	2627.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.00;DP=264;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.10;ReadPosRankSum=0.356;SOR=0.725;set=variant	GT:AD:DP:GQ:PL	0/1:25,22:47:99:528,0,581
chr1	169510118	.	G	A	5163.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-2.143e+00;ClippingRankSum=0.00;DP=493;ExcessHet=3.9991;FS=7.515;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.48;ReadPosRankSum=0.626;SOR=1.028;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:43,35:78:99:0|1:169510118_G_A:946,0,1634
chr1	169510139	.	G	A	2685.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.106e+00;ClippingRankSum=0.00;DP=434;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=14.13;ReadPosRankSum=0.044;SOR=0.668;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:32,44:76:99:1|0:169510118_G_A:1239,0,1138
chr1	169510380	.	G	A	5178.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-8.180e-01;ClippingRankSum=0.00;DP=399;ExcessHet=6.2536;FS=1.257;MLEAC=10;MLEAF=0.556;MQ=56.48;MQRankSum=0.617;QD=14.59;ReadPosRankSum=0.448;SOR=0.621;set=variant	GT:AD:DP:GQ:PL	0/1:37,30:67:99:710,0,1051
chr1	169510524	.	A	G	4593.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=2.12;ClippingRankSum=0.00;DP=338;ExcessHet=6.2536;FS=2.515;MLEAC=10;MLEAF=0.556;MQ=55.07;MQRankSum=-1.747e+00;QD=15.52;ReadPosRankSum=-3.000e-01;SOR=0.851;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:39,27:66:99:.:.:691,0,1049
chr1	169511555	.	T	C	9701.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=2.81;ClippingRankSum=0.00;DP=666;ExcessHet=6.2536;FS=0.523;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.09;ReadPosRankSum=0.378;SOR=0.694;set=variant	GT:AD:DP:GQ:PL	0/1:64,48:112:99:1294,0,1644
chr1	169511734	.	T	C	6237.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.03;ClippingRankSum=0.00;DP=424;ExcessHet=6.2536;FS=2.909;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.95;ReadPosRankSum=0.193;SOR=0.549;set=variant	GT:AD:DP:GQ:PL	0/1:37,35:72:99:903,0,1013
chr1	169511755	.	T	C	6174.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.35;ClippingRankSum=0.00;DP=356;ExcessHet=6.2536;FS=3.119;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=19.35;ReadPosRankSum=-8.800e-02;SOR=0.867;set=variant	GT:AD:DP:GQ:PL	0/1:30,30:60:99:964,0,841
chr1	169512027	.	T	C	8690.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.00;DP=536;ExcessHet=6.2536;FS=1.791;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.31;ReadPosRankSum=-1.400e-02;SOR=0.538;set=variant	GT:AD:DP:GQ:PL	0/1:46,48:94:99:1321,0,1296
chr1	169512093	.	A	G	13148.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=2.44;ClippingRankSum=0.00;DP=768;ExcessHet=6.2536;FS=0.534;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.94;ReadPosRankSum=-1.100e-02;SOR=0.730;set=variant	GT:AD:DP:GQ:PL	0/1:58,63:121:99:1756,0,1423
chr1	169512120	.	G	A	10636.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-2.285e+00;ClippingRankSum=0.00;DP=681;ExcessHet=6.2536;FS=0.538;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.54;ReadPosRankSum=0.598;SOR=0.638;set=variant	GT:AD:DP:GQ:PL	0/1:53,54:107:99:1421,0,1515
chr1	169519049	.	T	C	1849.64	PASS	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=16;MLEAF=1.00;MQ=58.97;QD=34.25;SOR=2.137;set=variant	GT:AD:DP:GQ:PL	1/1:0,16:16:48:542,48,0
chr1	169519112	.	C	T	1265.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.860e-01;ClippingRankSum=0.00;DP=282;ExcessHet=3.8535;FS=2.419;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.20;ReadPosRankSum=0.259;SOR=0.541;set=variant	GT:AD:DP:GQ:PL	0/1:20,17:37:99:390,0,523
chr1	169673838	.	G	A	9153.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-4.390e-01;ClippingRankSum=0.00;DP=792;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.34;ReadPosRankSum=0.069;SOR=0.640;set=variant	GT:AD:DP:GQ:PL	0/1:80,61:141:99:1440,0,2071
chr1	169677709	.	A	G	11996.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;ClippingRankSum=0.00;DP=682;ExcessHet=9.7754;FS=1.797;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=18.80;ReadPosRankSum=-2.010e-01;SOR=0.865;set=variant	GT:AD:DP:GQ:PL	0/1:53,69:122:99:2126,0,1348
chr1	169694918	.	A	G	4226.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.00;DP=627;ExcessHet=3.9991;FS=0.380;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=11.30;ReadPosRankSum=1.18;SOR=0.732;set=variant	GT:AD:DP:GQ:PL	0/1:65,30:95:99:644,0,1680
chr1	169696946	.	G	A	9233.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-8.070e-01;ClippingRankSum=0.00;DP=889;ExcessHet=3.9991;FS=1.117;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.01;ReadPosRankSum=-2.170e-01;SOR=0.791;set=variant	GT:AD:DP:GQ:PL	0/1:77,96:173:99:2255,0,2032
chr1	169951997	.	C	T	637.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-7.810e-01;ClippingRankSum=0.00;DP=283;ExcessHet=3.2736;FS=5.143;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.96;ReadPosRankSum=0.138;SOR=1.445;set=variant	GT:AD:DP:GQ:PL	0/1:20,19:39:99:455,0,526
chr1	170501385	.	A	C	10069.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;ClippingRankSum=0.00;DP=310;ExcessHet=3.0103;FS=3.070;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=32.91;ReadPosRankSum=0.844;SOR=1.965;set=variant	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1563,141,0
chr1	170521376	.	G	A	19887.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=1.82;ClippingRankSum=0.00;DP=870;ExcessHet=1.5127;FS=2.354;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=23.82;ReadPosRankSum=1.43;SOR=0.940;set=variant	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4761,451,0
chr1	170522667	.	T	A	4403.20	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-4.350e-01;ClippingRankSum=0.00;DP=352;ExcessHet=1.8603;FS=0.454;MLEAC=10;MLEAF=0.556;MQ=60.11;MQRankSum=1.14;QD=15.73;ReadPosRankSum=-3.050e-01;SOR=0.735;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:33,27:60:99:1|0:170522656_CT_C:548,0,824
chr1	171076966	.	G	A	6824.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.745e+00;ClippingRankSum=0.00;DP=470;ExcessHet=0.9154;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=22.16;ReadPosRankSum=0.684;SOR=0.670;set=variant	GT:AD:DP:GQ:PL	0/1:29,40:69:99:1062,0,739
chr1	171080080	.	G	A	4685.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.04;ClippingRankSum=0.00;DP=766;ExcessHet=4.8226;FS=0.522;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.44;ReadPosRankSum=0.528;SOR=0.659;set=variant	GT:AD:DP:GQ:PL	0/1:98,72:170:99:1671,0,2438
chr1	171083174	.	C	T	810.90	PASS	AC=1;AF=0.643;AN=2;BaseQRankSum=-1.150e+00;ClippingRankSum=0.00;DP=36;ExcessHet=0.2340;FS=0.000;MLEAC=9;MLEAF=0.643;MQ=56.81;MQRankSum=0.00;QD=31.19;ReadPosRankSum=-3.190e-01;SOR=5.136;set=variant	GT:AD:DP:GQ:PL	0/1:1,3:4:28:93,0,28
chr1	171083242	.	A	G	1620.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.00;DP=153;ExcessHet=2.5097;FS=3.041;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=16.37;ReadPosRankSum=0.736;SOR=0.397;set=variant	GT:AD:DP:GQ:PL	0/1:13,13:26:99:356,0,370
chr1	171106931	.	A	G	3053.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-3.290e-01;ClippingRankSum=0.00;DP=402;ExcessHet=2.5097;FS=5.120;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.12;ReadPosRankSum=0.176;SOR=1.008;set=variant	GT:AD:DP:GQ:PL	0/1:35,28:63:99:685,0,907
chr1	171130598	.	CACACA	C	1308.96	PASS	AC=1;AF=0.188;AN=2;BaseQRankSum=-1.591e+00;ClippingRankSum=0.00;DP=137;ExcessHet=3.9794;FS=1.110;MLEAC=3;MLEAF=0.188;MQ=57.20;MQRankSum=0.674;QD=23.80;ReadPosRankSum=0.525;SOR=0.456;set=variant2	GT:AD:DP:GQ:PL	0/1:8,8:16:99:301,0,406
chr1	171168584	.	C	T	14724.78	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-2.680e-01;ClippingRankSum=0.00;DP=468;ExcessHet=0.3904;FS=1.955;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=26.28;ReadPosRankSum=1.14;SOR=0.860;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,76:76:99:1|1:171168584_C_T:3409,229,0
chr1	171168585	.	A	G	15642.13	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.00;DP=464;ExcessHet=0.1296;FS=0.704;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=30.19;ReadPosRankSum=1.14;SOR=0.828;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,76:76:99:1|1:171168584_C_T:3409,229,0
chr1	171174531	.	A	G	8421.78	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.35;ClippingRankSum=0.00;DP=738;ExcessHet=0.3904;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=16.29;ReadPosRankSum=0.138;SOR=0.715;set=variant	GT:AD:DP:GQ:PL	0/1:120,61:181:99:1359,0,2915
chr1	171227216	.	T	C	2543.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-7.800e-01;ClippingRankSum=0.00;DP=290;ExcessHet=2.5097;FS=2.047;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.61;ReadPosRankSum=0.093;SOR=0.520;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1318,132,0
chr1	171621525	.	C	T	2257.34	PASS	AC=2;AF=0.167;AN=2;BaseQRankSum=-1.592e+00;ClippingRankSum=0.00;DP=334;ExcessHet=0.4012;FS=2.053;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=23.27;ReadPosRankSum=-1.040e-01;SOR=0.478;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1837,171,0
chr1	173878832	.	T	C	1586.81	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.00;DP=212;ExcessHet=2.5097;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.17;ReadPosRankSum=-6.120e-01;SOR=0.735;set=variant	GT:AD:DP:GQ:PL	0/1:19,8:27:99:203,0,565
chr1	173878862	.	T	C	2349.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.03;ClippingRankSum=0.00;DP=303;ExcessHet=2.5097;FS=1.200;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.82;ReadPosRankSum=0.344;SOR=0.798;set=variant	GT:AD:DP:GQ:PL	0/1:26,12:38:99:234,0,711
chr1	175299301	.	T	C	36617.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.385e+00;ClippingRankSum=0.00;DP=1437;ExcessHet=3.0103;FS=1.070;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.31;ReadPosRankSum=-4.050e-01;SOR=0.668;set=variant	GT:AD:DP:GQ:PL	1/1:0,222:222:99:6672,666,0
chr1	175324651	.	A	G	11124.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-1.750e-01;ClippingRankSum=0.00;DP=457;ExcessHet=3.2736;FS=0.901;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.78;ReadPosRankSum=1.19;SOR=0.570;set=variant	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2544,273,0
chr1	175348723	.	C	T	3280.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-2.310e-01;ClippingRankSum=0.00;DP=279;ExcessHet=3.4788;FS=0.528;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=15.85;ReadPosRankSum=0.380;SOR=0.741;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1079,108,0
chr1	175355391	.	A	G	9357.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.00;DP=394;ExcessHet=0.8432;FS=0.575;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=26.07;ReadPosRankSum=1.52;SOR=0.648;set=variant	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2132,213,0
chr1	175375469	.	C	A	1741.53	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-3.910e-01;ClippingRankSum=0.00;DP=184;ExcessHet=11.4027;FS=0.616;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.18;ReadPosRankSum=-2.530e-01;SOR=0.774;set=variant	GT:AD:DP:GQ:PL	0/1:3,19:22:19:505,0,19
chr1	175375683	.	T	C	886	PASS	AC=2;AF=0.625;AN=2;BaseQRankSum=2.74;ClippingRankSum=0.00;DP=73;ExcessHet=1.1394;FS=2.843;MLEAC=11;MLEAF=0.688;MQ=59.34;MQRankSum=0.00;QD=19.69;ReadPosRankSum=0.349;SOR=0.895;set=variant	GT:AD:DP:GQ:PL	1/1:0,7:7:21:241,21,0
chr1	176050430	.	G	GA	15.52	PASS	AC=1;AF=0.063;AN=2;BaseQRankSum=-2.530e-01;ClippingRankSum=0.00;DP=50;ExcessHet=3.5218;FS=3.979;MLEAC=2;MLEAF=0.125;MQ=51.96;MQRankSum=0.00;QD=3.10;ReadPosRankSum=1.04;SOR=0.061;set=variant2	GT:AD:DP:GQ:PL	0/1:3,2:5:51:51,0,51
chr1	176118219	.	G	A	3475.15	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-8.460e-01;ClippingRankSum=0.00;DP=387;ExcessHet=15.7960;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=9.68;ReadPosRankSum=-5.620e-01;SOR=0.689;set=variant	GT:AD:DP:GQ:PL	0/1:39,33:72:99:704,0,1035
chr1	179520506	.	G	A	4326.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.00;DP=213;ExcessHet=4.8226;FS=1.205;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=20.70;ReadPosRankSum=1.09;SOR=0.818;set=variant	GT:AD:DP:GQ:PL	0/1:23,14:37:99:337,0,556
chr1	179544898	.	T	C	15523.45	PASS	AC=2;AF=1.00;AN=2;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=34.12;SOR=2.086;set=variant	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2282,198,0
chr1	181018236	.	A	G	7896.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-9.660e-01;ClippingRankSum=0.00;DP=661;ExcessHet=0.9154;FS=3.457;MLEAC=7;MLEAF=0.389;MQ=57.27;MQRankSum=1.67;QD=17.17;ReadPosRankSum=-9.600e-02;SOR=0.484;set=variant	GT:AD:DP:GQ:PL	1/1:1,115:116:99:3333,312,0
chr1	181024404	.	G	A	7158.76	PASS	AC=2;AF=0.667;AN=2;DP=443;ExcessHet=0.0098;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;QD=27.75;SOR=1.010;set=variant	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1140,117,0
chr1	181680082	.	G	A	3212.65	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-5.510e-01;ClippingRankSum=0.00;DP=578;ExcessHet=4.8226;FS=0.871;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.04;ReadPosRankSum=1.09;SOR=0.752;set=variant	GT:AD:DP:GQ:PL	0/1:59,48:107:99:1006,0,1469
chr1	181725110	.	T	C	2745.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.00;DP=416;ExcessHet=6.2839;FS=0.451;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.36;ReadPosRankSum=0.064;SOR=0.657;set=variant	GT:AD:DP:GQ:PL	0/1:36,33:69:99:785,0,766
chr1	181741301	.	C	T	4130.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-6.190e-01;ClippingRankSum=0.00;DP=614;ExcessHet=6.2839;FS=0.525;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=9.02;ReadPosRankSum=0.056;SOR=0.762;set=variant	GT:AD:DP:GQ:PL	0/1:74,49:123:99:1112,0,1679
chr1	181752923	.	AAGCTT	A	8173.59	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-6.060e-01;ClippingRankSum=0.00;DP=278;ExcessHet=4.8226;FS=2.443;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=31.56;ReadPosRankSum=1.00;SOR=0.532;set=variant2	GT:AD:DP:GQ:PL	0/1:23,20:43:99:751,0,1471
chr1	181767595	.	C	T	1980.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.00;DP=417;ExcessHet=3.2736;FS=1.210;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=12.08;ReadPosRankSum=-1.650e-01;SOR=0.598;set=variant	GT:AD:DP:GQ:PL	0/1:56,52:108:99:1298,0,1387
chr1	182356399	.	A	G	5131.17	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-9.500e-02;ClippingRankSum=0.00;DP=286;ExcessHet=6.2839;FS=0.993;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=18.86;ReadPosRankSum=1.31;SOR=0.626;set=variant	GT:AD:DP:GQ:PL	1/1:0,29:29:87:951,87,0
chr1	182551337	.	A	C	6771.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.00;DP=529;ExcessHet=3.4788;FS=0.527;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.66;ReadPosRankSum=0.254;SOR=0.619;set=variant	GT:AD:DP:GQ:PL	0/1:48,43:91:99:1058,0,1042
chr1	182993025	.	C	T	9265.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-1.407e+00;ClippingRankSum=0.00;DP=397;ExcessHet=1.5127;FS=0.577;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=25.88;ReadPosRankSum=-1.195e+00;SOR=0.763;set=variant	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1949,177,0
chr1	183072590	.	T	C	15401.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=1.80;ClippingRankSum=0.00;DP=728;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=22.65;ReadPosRankSum=-1.211e+00;SOR=0.637;set=variant	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3794,363,0
chr1	183072701	.	C	T	3669.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.44;ClippingRankSum=0.00;DP=401;ExcessHet=2.5097;FS=2.305;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.75;ReadPosRankSum=0.848;SOR=0.873;set=variant	GT:AD:DP:GQ:PL	0/1:45,29:74:99:720,0,1188
chr1	183085755	.	A	G	9125.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=3.98;ClippingRankSum=0.00;DP=438;ExcessHet=2.5097;FS=3.125;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=22.99;ReadPosRankSum=1.81;SOR=0.877;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2088,171,0
chr1	183086757	.	A	C	18563.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.00;DP=930;ExcessHet=2.5097;FS=1.362;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=21.71;ReadPosRankSum=1.03;SOR=0.793;set=variant	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4544,444,0
chr1	183093875	.	T	C	12198.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=1.05;ClippingRankSum=0.00;DP=589;ExcessHet=2.5097;FS=0.652;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=23.24;ReadPosRankSum=0.269;SOR=0.775;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:1,113:117:99:.:.:3606,308,0
chr1	183094547	.	T	C	13507.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=1.04;ClippingRankSum=0.00;DP=729;ExcessHet=2.5097;FS=0.621;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.65;ReadPosRankSum=0.695;SOR=0.793;set=variant	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3385,351,0
chr1	183105534	.	T	C	12193.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=1.43;ClippingRankSum=0.00;DP=623;ExcessHet=2.5097;FS=2.937;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=22.21;ReadPosRankSum=1.87;SOR=0.860;set=variant	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3564,348,0
chr1	183105705	.	G	A	3429.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-8.000e-03;ClippingRankSum=0.00;DP=459;ExcessHet=2.5097;FS=5.570;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.47;ReadPosRankSum=-1.250e-01;SOR=1.006;set=variant	GT:AD:DP:GQ:PL	0/1:55,32:87:99:787,0,1451
chr1	183184616	.	C	T	5136.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-3.750e-01;ClippingRankSum=0.00;DP=415;ExcessHet=3.9991;FS=0.829;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=14.68;ReadPosRankSum=1.24;SOR=0.631;set=variant	GT:AD:DP:GQ:PL	0/1:44,24:68:99:462,0,993
chr1	183187603	.	C	T	11740.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.100e-02;ClippingRankSum=0.00;DP=851;ExcessHet=3.9991;FS=3.323;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=15.27;ReadPosRankSum=-3.600e-02;SOR=0.958;set=variant	GT:AD:DP:GQ:PL	0/1:99,70:169:99:1618,0,2510
chr1	183191324	.	C	A	1342.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.349e+00;ClippingRankSum=0.00;DP=329;ExcessHet=3.2736;FS=2.797;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=13.84;ReadPosRankSum=0.643;SOR=0.423;set=variant	GT:AD:DP:GQ:PL	0/1:16,36:52:99:823,0,323
chr1	183192304	.	T	G	2719.48	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.00;DP=256;ExcessHet=3.9991;FS=0.503;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=0.357;SOR=0.623;set=variant	GT:AD:DP:GQ:PL	0/1:31,14:45:99:275,0,763
chr1	183206573	.	G	A	14795.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.181e+00;ClippingRankSum=0.00;DP=1016;ExcessHet=3.9991;FS=6.229;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=16.79;ReadPosRankSum=0.675;SOR=0.902;set=variant	GT:AD:DP:GQ:PL	0/1:80,78:158:99:1962,0,2144
chr1	183532437	.	G	A	2698.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.00;DP=453;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.49;ReadPosRankSum=-2.360e-01;SOR=0.707;set=variant	GT:AD:DP:GQ:PL	0/1:44,33:77:99:799,0,1074
chr1	183542387	.	T	C	5844.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.00;DP=342;ExcessHet=2.5097;FS=0.967;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=19.04;ReadPosRankSum=1.12;SOR=0.780;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1074,108,0
chr1	185984517	.	T	C	2731.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-3.100e-01;ClippingRankSum=0.00;DP=181;ExcessHet=1.8603;FS=1.672;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.08;ReadPosRankSum=0.869;SOR=0.943;set=variant	GT:AD:DP:GQ:PL	0/1:12,24:36:99:600,0,255
chr1	186026474	.	T	C	18360.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.08;ClippingRankSum=0.00;DP=712;ExcessHet=3.8535;FS=1.546;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=26.53;ReadPosRankSum=0.088;SOR=0.683;set=variant	GT:AD:DP:GQ:PL	1/1:3,129:132:99:4156,312,0
chr1	186031041	.	C	T	7127.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.00;DP=304;ExcessHet=3.8535;FS=2.803;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.76;ReadPosRankSum=0.568;SOR=0.928;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1690,171,0
chr1	186050417	.	A	G	16753.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.00;DP=647;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=26.63;ReadPosRankSum=-4.850e-01;SOR=0.686;set=variant	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3076,282,0
chr1	186055371	.	A	G	6288.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.41;ClippingRankSum=0.00;DP=264;ExcessHet=3.8535;FS=2.389;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=25.56;ReadPosRankSum=-6.900e-02;SOR=0.965;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1474,150,0
chr1	186092076	.	A	C	4111.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-5.580e-01;ClippingRankSum=0.00;DP=166;ExcessHet=1.5127;FS=3.853;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=27.97;ReadPosRankSum=0.077;SOR=0.357;set=variant	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1058,90,0
chr1	186101539	.	A	G	11837.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.00;DP=734;ExcessHet=2.5097;FS=1.886;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=17.88;ReadPosRankSum=1.10;SOR=0.671;set=variant	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3289,342,0
chr1	186113348	.	C	T	5647.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-5.000e-01;ClippingRankSum=0.00;DP=615;ExcessHet=0.8432;FS=1.793;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=15.91;ReadPosRankSum=0.754;SOR=0.807;set=variant	GT:AD:DP:GQ:PL	1/1:1,136:137:99:3951,376,0
chr1	186121950	.	G	A	832.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-9.380e-01;ClippingRankSum=0.00;DP=406;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.25;ReadPosRankSum=-9.430e-01;SOR=0.787;set=variant	GT:AD:DP:GQ:PL	0/1:58,43:101:99:867,0,1358
chr1	186946912	.	G	A	10215.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.593e+00;ClippingRankSum=0.00;DP=394;ExcessHet=3.0103;FS=2.203;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.53;ReadPosRankSum=0.664;SOR=0.817;set=variant	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1467,156,0
chr1	192780268	.	T	C	6834.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=2.87;ClippingRankSum=0.00;DP=761;ExcessHet=8.3924;FS=1.818;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.73;ReadPosRankSum=0.377;SOR=0.865;set=variant	GT:AD:DP:GQ:PL	0/1:72,59:131:99:1768,0,1746
chr1	192780657	.	C	T	981.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-9.430e-01;ClippingRankSum=0.00;DP=334;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=6.14;ReadPosRankSum=1.68;SOR=0.713;set=variant	GT:AD:DP:GQ:PL	0/1:37,24:61:99:552,0,988
chr1	193051685	.	G	A	6934.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.00;DP=305;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.96;ReadPosRankSum=-1.560e-01;SOR=0.723;set=variant	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1115,114,0
chr1	196642233	.	G	A	4228.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-8.580e-01;ClippingRankSum=0.00;DP=518;ExcessHet=2.5097;FS=0.854;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.38;ReadPosRankSum=-6.020e-01;SOR=0.640;set=variant	GT:AD:DP:GQ:PL	0/1:57,37:94:99:830,0,1688
chr1	196654324	.	A	C	7558.63	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=2.29;ClippingRankSum=0.00;DP=328;ExcessHet=3.2736;FS=1.129;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=23.77;ReadPosRankSum=1.62;SOR=0.589;set=variant	GT:AD:DP:GQ:PL	0/1:31,25:56:99:630,0,719
chr1	196659237	.	C	T	4753.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=-6.720e-01;ClippingRankSum=0.00;DP=225;ExcessHet=3.2736;FS=0.606;MLEAC=16;MLEAF=0.889;MQ=59.22;MQRankSum=0.00;QD=21.32;ReadPosRankSum=-1.860e-01;SOR=0.799;set=variant	GT:AD:DP:GQ:PL	0/1:30,17:47:99:356,0,781
chr1	196682947	.	G	A	6158.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.00;DP=501;ExcessHet=6.2536;FS=1.113;MLEAC=8;MLEAF=0.444;MQ=59.82;MQRankSum=0.00;QD=14.66;ReadPosRankSum=0.654;SOR=0.603;set=variant	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1259,0,1164
chr1	196712577	.	T	C	736.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=3.20;ClippingRankSum=0.00;DP=123;ExcessHet=7.6101;FS=3.036;MLEAC=5;MLEAF=0.278;MQ=54.84;MQRankSum=-3.654e+00;QD=9.69;ReadPosRankSum=0.524;SOR=1.215;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:21,7:28:99:0|1:196712577_T_C:225,0,1423
chr1	196712586	.	C	T	764.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.834e+00;ClippingRankSum=0.00;DP=140;ExcessHet=7.6101;FS=1.136;MLEAC=5;MLEAF=0.278;MQ=55.25;MQRankSum=-3.588e+00;QD=8.59;ReadPosRankSum=0.462;SOR=0.984;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,8:30:99:0|1:196712577_T_C:262,0,1408
chr1	196757392	.	C	T	6256.91	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=1.59;ClippingRankSum=0.00;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=50.52;MQRankSum=-4.031e+00;QD=25.85;ReadPosRankSum=1.34;SOR=0.703;set=variant	GT:AD:DP:GQ:PL	0/1:32,27:59:99:669,0,760
chr1	196801042	.	G	T	8942.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.473e+00;ClippingRankSum=0.00;DP=822;ExcessHet=6.2536;FS=3.235;MLEAC=8;MLEAF=0.444;MQ=55.94;MQRankSum=0.525;QD=12.17;ReadPosRankSum=1.26;SOR=0.950;set=variant	GT:AD:DP:GQ:PL	0/1:98,72:170:99:1696,0,2485
chr1	196801078	.	A	T	6343.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-9.420e-01;ClippingRankSum=0.00;DP=685;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=53.58;MQRankSum=-9.100e-02;QD=10.52;ReadPosRankSum=0.136;SOR=0.721;set=variant	GT:AD:DP:GQ:PL	0/1:77,61:138:99:1380,0,1825
chr1	196874356	.	G	T	12204.45	PASS	AC=2;AF=1.00;AN=2;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=57.94;QD=31.13;SOR=1.474;set=variant	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2180,210,0
chr1	196876458	.	A	G	4751.65	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.00;DP=181;ExcessHet=3.2736;FS=0.901;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.85;ReadPosRankSum=0.363;SOR=0.552;set=variant	GT:AD:DP:GQ:PL	1/1:0,24:24:72:778,72,0
chr1	196920148	.	C	T	3658.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-1.800e+00;ClippingRankSum=0.00;DP=217;ExcessHet=6.2839;FS=1.201;MLEAC=13;MLEAF=0.722;MQ=58.75;MQRankSum=-6.450e-01;QD=17.09;ReadPosRankSum=0.489;SOR=0.597;set=variant	GT:AD:DP:GQ:PL	0/1:27,18:45:99:387,0,776
chr1	196927185	.	G	T	879.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.641e+00;ClippingRankSum=0.00;DP=420;ExcessHet=3.0103;FS=6.045;MLEAC=1;MLEAF=0.056;MQ=59.90;MQRankSum=-9.600e-01;QD=11.73;ReadPosRankSum=0.574;SOR=0.478;set=variant	GT:AD:DP:GQ:PL	0/1:37,38:75:99:914,0,1029
chr1	197009798	.	A	G	3836.37	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=1.56;ClippingRankSum=0.00;DP=228;ExcessHet=3.8535;FS=1.649;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=16.98;ReadPosRankSum=0.994;SOR=0.745;set=variant	GT:AD:DP:GQ:PL	0/1:28,18:46:99:428,0,651
chr1	197030201	.	T	C	10596.45	PASS	AC=2;AF=1.00;AN=2;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.03;QD=30.63;SOR=0.936;set=variant	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1888,189,0
chr1	197031021	.	C	T	5920.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.932e+00;ClippingRankSum=0.00;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=27.54;ReadPosRankSum=-6.690e-01;SOR=0.246;set=variant	GT:AD:DP:GQ:PL	1/1:0,29:29:87:803,87,0
chr1	197053561	.	TA	TAA,T	1097.68	PASS	AC=1,0;AF=0.278,0.167;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.00;DP=264;ExcessHet=20.0237;FS=1.993;MLEAC=5,3;MLEAF=0.278,0.167;MQ=60.31;MQRankSum=0.00;QD=6.13;ReadPosRankSum=0.362;SOR=0.547;set=variant2	GT:AD:DP:GQ:PL	0/1:14,9,21:44:99:321,265,746,0,115,283
chr1	197055925	.	T	C	6645.45	PASS	AC=2;AF=1.00;AN=2;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.05;SOR=1.036;set=variant	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1380,129,0
chr1	197070442	.	G	T	4654.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.512e+00;ClippingRankSum=0.00;DP=660;ExcessHet=3.8535;FS=0.544;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.93;ReadPosRankSum=-9.470e-01;SOR=0.739;set=variant	GT:AD:DP:GQ:PL	0/1:103,87:190:99:2143,0,2858
chr1	197070697	.	T	C	3632.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=4.92;ClippingRankSum=0.00;DP=521;ExcessHet=3.8535;FS=0.941;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=12.23;ReadPosRankSum=0.490;SOR=0.629;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:86,49:135:99:0|1:197070697_T_C:1775,0,3427
chr1	197070707	.	G	A	3478.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.53;ClippingRankSum=0.00;DP=528;ExcessHet=3.8535;FS=2.050;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.44;ReadPosRankSum=1.11;SOR=0.821;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:94,48:142:99:0|1:197070697_T_C:1741,0,3630
chr1	197070776	.	C	T	15870.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-3.444e+00;ClippingRankSum=0.00;DP=726;ExcessHet=6.2839;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=21.98;ReadPosRankSum=0.869;SOR=0.641;set=variant	GT:AD:DP:GQ:PL	0/1:58,87:145:99:2584,0,1633
chr1	197070815	.	T	C	31810.45	PASS	AC=2;AF=1.00;AN=2;DP=949;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.59;SOR=0.935;set=variant	GT:AD:DP:GQ:PL	1/1:0,189:189:99:6581,568,0
chr1	197070901	.	A	G	32163.45	PASS	AC=2;AF=1.00;AN=2;DP=1038;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.56;SOR=0.735;set=variant	GT:AD:DP:GQ:PL	1/1:0,213:213:99:6957,640,0
chr1	197072420	.	T	C	5050.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=2.88;ClippingRankSum=0.00;DP=664;ExcessHet=3.8535;FS=1.104;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.40;ReadPosRankSum=1.32;SOR=0.823;set=variant	GT:AD:DP:GQ:PL	0/1:106,93:199:99:2576,0,2612
chr1	197073932	.	T	C	1860.42	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=4.61;ClippingRankSum=0.00;DP=180;ExcessHet=3.8535;FS=5.273;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=20.22;ReadPosRankSum=-4.810e-01;SOR=0.630;set=variant	GT:AD:DP:GQ:PL	0/1:14,24:38:99:860,0,376
chr1	197091537	.	A	T	14801.45	PASS	AC=2;AF=1.00;AN=2;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.27;SOR=1.356;set=variant	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2645,249,0
chr1	197112533	.	G	A	31096.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;ClippingRankSum=0.00;DP=1041;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=29.99;ReadPosRankSum=-9.080e-01;SOR=0.814;set=variant	GT:AD:DP:GQ:PL	1/1:2,166:168:99:5166,455,0
chr1	197128726	.	G	A	10514.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-1.969e+00;ClippingRankSum=0.00;DP=522;ExcessHet=6.2839;FS=1.273;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=20.78;ReadPosRankSum=0.335;SOR=0.564;set=variant	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1163,0,930
chr1	197390368	.	A	G	23435.45	PASS	AC=2;AF=1.00;AN=2;DP=742;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.97;SOR=0.707;set=variant	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4200,378,0
chr1	198704294	.	C	T	6532.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601e+00;ClippingRankSum=0.00;DP=567;ExcessHet=3.4788;FS=2.493;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=15.44;ReadPosRankSum=0.361;SOR=0.922;set=variant	GT:AD:DP:GQ:PL	0/1:50,42:92:99:1023,0,1591
chr1	201020105	.	A	G	3800.40	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-3.110e-01;ClippingRankSum=0.00;DP=174;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.22;ReadPosRankSum=0.447;SOR=0.712;set=variant	GT:AD:DP:GQ:PL	0/1:9,15:24:99:424,0,205
chr1	201022376	.	G	A	1850.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.00;DP=466;ExcessHet=3.2736;FS=0.532;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.84;ReadPosRankSum=1.06;SOR=0.742;set=variant	GT:AD:DP:GQ:PL	0/1:60,50:110:99:1120,0,1380
chr1	201035071	.	G	A	1301.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.11;ClippingRankSum=0.00;DP=338;ExcessHet=3.2736;FS=0.679;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.85;ReadPosRankSum=2.06;SOR=0.701;set=variant	GT:AD:DP:GQ:PL	0/1:35,28:63:99:631,0,801
chr1	201038687	.	A	G	2263.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.00;DP=451;ExcessHet=3.8535;FS=2.883;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.43;ReadPosRankSum=1.22;SOR=0.868;set=variant	GT:AD:DP:GQ:PL	0/1:50,33:83:99:782,0,1129
chr1	201044748	.	A	G	4264.13	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.00;DP=194;ExcessHet=0.1296;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=28.24;ReadPosRankSum=1.42;SOR=0.883;set=variant	GT:AD:DP:GQ:PL	1/1:0,30:30:90:932,90,0
chr1	201047075	.	A	G	5369.78	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.00;DP=299;ExcessHet=0.3904;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=23.87;ReadPosRankSum=-6.940e-01;SOR=0.723;set=variant	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1092,111,0
chr1	201047111	.	A	G	1553.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.91;ClippingRankSum=0.00;DP=333;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=12.23;ReadPosRankSum=0.046;SOR=0.662;set=variant	GT:AD:DP:GQ:PL	0/1:21,24:45:99:621,0,424
chr1	201047135	.	G	A	1743.61	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.15;ClippingRankSum=0.00;DP=365;ExcessHet=0.8432;FS=1.356;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.73;ReadPosRankSum=0.729;SOR=0.660;set=variant	GT:AD:DP:GQ:PL	0/1:34,29:63:99:643,0,875
chr1	201052283	.	G	A	924.11	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=2.66;ClippingRankSum=0.00;DP=133;ExcessHet=0.8432;FS=5.427;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=16.80;ReadPosRankSum=-2.520e-01;SOR=0.184;set=variant	GT:AD:DP:GQ:PL	0/1:12,14:26:99:397,0,305
chr1	201052310	.	A	T	1923.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.387e+00;ClippingRankSum=0.00;DP=218;ExcessHet=3.8535;FS=0.807;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=19.43;ReadPosRankSum=0.116;SOR=0.557;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:23,19:42:99:0|1:201052310_A_T:729,0,909
chr1	201052312	.	A	C	1923.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-5.880e-01;ClippingRankSum=0.00;DP=225;ExcessHet=3.8535;FS=1.724;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=18.86;ReadPosRankSum=0.204;SOR=0.469;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:23,19:42:99:0|1:201052310_A_T:729,0,909
chr1	201060865	.	G	A	3642.06	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=-1.111e+00;ClippingRankSum=0.00;DP=273;ExcessHet=0.2709;FS=4.031;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=22.34;ReadPosRankSum=0.752;SOR=0.580;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1677,171,0
chr1	201112981	.	A	G	10190.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=1.62;ClippingRankSum=0.00;DP=499;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.61;ReadPosRankSum=-8.110e-01;SOR=0.659;set=variant	GT:AD:DP:GQ:PL	0/1:22,33:55:99:827,0,419
chr1	201252866	.	C	T	157.66	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-7.900e-02;ClippingRankSum=0.00;DP=104;ExcessHet=3.2736;FS=1.833;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=7.51;ReadPosRankSum=1.02;SOR=1.230;set=variant	GT:AD:DP:GQ:PL	0/1:7,5:12:99:140,0,203
chr1	201282573	.	A	G	1809.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=4.91;ClippingRankSum=0.00;DP=464;ExcessHet=3.0103;FS=12.747;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.99;ReadPosRankSum=0.996;SOR=1.653;set=variant	GT:AD:DP:GQ:PL	0/1:82,69:151:99:1844,0,1881
chr1	201285759	.	A	G	7680.45	PASS	AC=2;AF=1.00;AN=2;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.45;SOR=0.868;set=variant	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1222,123,0
chr1	201286771	.	C	T	2710.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-4.130e-01;ClippingRankSum=0.00;DP=402;ExcessHet=6.2839;FS=1.579;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.55;ReadPosRankSum=0.476;SOR=0.826;set=variant	GT:AD:DP:GQ:PL	0/1:40,29:69:99:738,0,961
chr1	201288955	.	G	A	2243.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-4.150e-01;ClippingRankSum=0.00;DP=470;ExcessHet=6.2839;FS=1.431;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=7.74;ReadPosRankSum=-6.030e-01;SOR=0.791;set=variant	GT:AD:DP:GQ:PL	0/1:46,23:69:99:413,0,1074
chr1	201334382	.	G	A	11282.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-7.840e-01;ClippingRankSum=0.00;DP=666;ExcessHet=2.5097;FS=0.583;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=18.35;ReadPosRankSum=-4.590e-01;SOR=0.749;set=variant	GT:AD:DP:GQ:PL	0/1:52,40:92:99:859,0,1293
chr1	201334795	.	C	T	408.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.440e-01;ClippingRankSum=0.00;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=5.68;ReadPosRankSum=0.865;SOR=0.765;set=variant	GT:AD:DP:GQ:PL	0/1:48,24:72:99:443,0,1122
chr1	201341175	.	CAGAAG	C	22576.76	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.00;DP=944;ExcessHet=2.5097;FS=0.549;MLEAC=12;MLEAF=0.667;MQ=60.01;MQRankSum=0.00;QD=26.59;ReadPosRankSum=0.834;SOR=0.774;set=variant2	GT:AD:DP:GQ:PL	0/1:88,59:147:99:2214,0,5857
chr1	202565948	.	G	A	4549.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.00;DP=690;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.29;ReadPosRankSum=0.179;SOR=0.640;set=variant	GT:AD:DP:GQ:PL	0/1:80,100:180:99:2288,0,1778
chr1	202574784	.	G	A	8050.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-2.435e+00;ClippingRankSum=0.00;DP=788;ExcessHet=6.2536;FS=1.113;MLEAC=8;MLEAF=0.444;MQ=59.30;MQRankSum=0.818;QD=12.22;ReadPosRankSum=0.826;SOR=0.620;set=variant	GT:AD:DP:GQ:PL	0/1:65,49:114:99:1149,0,1793
chr1	203148633	.	A	G	18111.45	PASS	AC=2;AF=1.00;AN=2;DP=663;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.36;SOR=0.755;set=variant	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3274,351,0
chr1	203152801	.	T	C	1086.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.66;ClippingRankSum=0.00;DP=319;ExcessHet=3.2736;FS=0.827;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.32;ReadPosRankSum=0.498;SOR=0.836;set=variant	GT:AD:DP:GQ:PL	0/1:34,22:56:99:527,0,859
chr1	203186067	.	G	A	2408.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-7.760e-01;ClippingRankSum=0.00;DP=526;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.75;ReadPosRankSum=-7.350e-01;SOR=0.630;set=variant	GT:AD:DP:GQ:PL	0/1:118,106:224:99:2443,0,2833
chr1	203186093	.	G	C	11367.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-8.440e-01;ClippingRankSum=0.00;DP=947;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.88;ReadPosRankSum=-7.100e-02;SOR=0.674;set=variant	GT:AD:DP:GQ:PL	0/1:91,107:198:99:2649,0,2144
chr1	203194186	.	C	T	6046.08	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=-7.540e-01;ClippingRankSum=0.00;DP=603;ExcessHet=1.8603;FS=0.528;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.87;ReadPosRankSum=0.034;SOR=0.631;set=variant	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2267,234,0
chr1	203652444	.	A	G	21428.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-8.110e-01;ClippingRankSum=0.00;DP=822;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.82;ReadPosRankSum=0.577;SOR=0.786;set=variant	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4086,405,0
chr1	203667409	.	T	C	11723.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=2.02;ClippingRankSum=0.00;DP=443;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.77;ReadPosRankSum=-9.280e-01;SOR=0.640;set=variant	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2828,267,0
chr1	204159611	.	CT	C	5510.59	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-4.700e-01;ClippingRankSum=0.00;DP=668;ExcessHet=4.8226;FS=0.806;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=15.35;ReadPosRankSum=-5.700e-02;SOR=0.629;set=variant2	GT:AD:DP:GQ:PL	0/1:49,55:104:99:1856,0,1666
chr1	204159787	.	G	C	7713.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-2.433e+00;ClippingRankSum=0.00;DP=703;ExcessHet=11.4027;FS=0.521;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.56;ReadPosRankSum=0.338;SOR=0.620;set=variant	GT:AD:DP:GQ:PL	0/1:56,54:110:99:1490,0,1812
chr1	205767885	.	G	A	1433.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.250e-01;ClippingRankSum=0.00;DP=383;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.69;ReadPosRankSum=-6.630e-01;SOR=0.648;set=variant	GT:AD:DP:GQ:PL	0/1:28,34:62:99:788,0,651
chr1	205884226	.	C	A	1328.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.72;ClippingRankSum=0.00;DP=469;ExcessHet=3.2736;FS=0.606;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.36;ReadPosRankSum=1.95;SOR=0.624;set=variant	GT:AD:DP:GQ:PL	0/1:70,45:115:99:1056,0,1731
chr1	206516261	.	C	T	2055.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291e+00;ClippingRankSum=0.00;DP=204;ExcessHet=22.7857;FS=11.893;MLEAC=9;MLEAF=0.500;MQ=41.08;MQRankSum=-1.460e-01;QD=10.13;ReadPosRankSum=-3.470e-01;SOR=1.614;set=variant	GT:AD:DP:GQ:PL	0/1:26,19:45:99:492,0,784
chr1	206566904	.	T	C	5359.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;ClippingRankSum=0.00;DP=495;ExcessHet=22.7857;FS=20.141;MLEAC=9;MLEAF=0.500;MQ=52.32;MQRankSum=-5.520e+00;QD=11.05;ReadPosRankSum=0.748;SOR=1.043;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:47,22:69:99:0|1:206566903_G_A:518,0,1207
chr1	206579798	.	T	C	2016.70	my_filter	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;ClippingRankSum=0.00;DP=128;ExcessHet=22.7857;FS=124.847;MLEAC=9;MLEAF=0.500;MQ=27.00;MQRankSum=0.00;QD=15.76;ReadPosRankSum=-1.220e-01;SOR=7.302;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:11,21:32:99:571,0,253
chr1	206579936	.	A	G	3766.67	my_filter	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;ClippingRankSum=0.00;DP=834;ExcessHet=22.7857;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=34.66;MQRankSum=-1.900e-02;QD=4.94;ReadPosRankSum=0.697;SOR=0.684;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:105,28:133:99:392,0,2570
chr1	206603535	.	G	A	11157.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-1.648e+00;ClippingRankSum=0.00;DP=771;ExcessHet=6.2536;FS=1.127;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.83;ReadPosRankSum=-4.210e-01;SOR=0.608;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:70,67:137:99:.:.:1640,0,1926
chr1	206626607	.	G	A	8375.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-9.070e-01;ClippingRankSum=0.00;DP=753;ExcessHet=6.2536;FS=1.104;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=12.37;ReadPosRankSum=0.197;SOR=0.601;set=variant	GT:AD:DP:GQ:PL	0/1:74,63:137:99:1381,0,1862
chr1	206634429	.	A	G	1044.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=3.88;ClippingRankSum=0.00;DP=398;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.12;ReadPosRankSum=-9.540e-01;SOR=0.848;set=variant	GT:AD:DP:GQ:PL	0/1:54,40:94:99:1079,0,1258
chr1	207015957	.	T	C	10405.17	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.00;DP=580;ExcessHet=6.2839;FS=0.581;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=18.45;ReadPosRankSum=0.106;SOR=0.607;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1877,204,0
chr1	207106444	.	A	G	2321.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=3.49;ClippingRankSum=0.00;DP=558;ExcessHet=3.8535;FS=2.255;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.63;ReadPosRankSum=0.396;SOR=0.855;set=variant	GT:AD:DP:GQ:PL	0/1:61,47:108:99:1252,0,1458
chr1	207106478	.	G	A	2053.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.098e+00;ClippingRankSum=0.00;DP=556;ExcessHet=3.8535;FS=2.327;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.56;ReadPosRankSum=-5.740e-01;SOR=0.855;set=variant	GT:AD:DP:GQ:PL	0/1:50,43:93:99:1046,0,1348
chr1	207110888	.	G	A	1450.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.281e+00;ClippingRankSum=0.00;DP=401;ExcessHet=3.8535;FS=0.583;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.24;ReadPosRankSum=-5.940e-01;SOR=0.638;set=variant	GT:AD:DP:GQ:PL	0/1:61,33:94:99:783,0,1815
chr1	207110936	.	T	C	3941.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.85;ClippingRankSum=0.00;DP=418;ExcessHet=3.9991;FS=1.972;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.23;ReadPosRankSum=0.364;SOR=0.565;set=variant	GT:AD:DP:GQ:PL	0/1:52,34:86:99:957,0,1391
chr1	207297680	.	T	C	12889.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.00;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.71;ReadPosRankSum=-2.290e+00;SOR=0.584;set=variant	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2344,225,0
chr1	207646322	.	G	A	3888.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.196e+00;ClippingRankSum=0.00;DP=621;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.55;ReadPosRankSum=0.047;SOR=0.687;set=variant	GT:AD:DP:GQ:PL	0/1:105,82:187:99:1762,0,2638
chr1	207646462	.	G	A	1136.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.761e+00;ClippingRankSum=0.00;DP=276;ExcessHet=3.8535;FS=1.735;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=12.22;ReadPosRankSum=0.325;SOR=0.968;set=variant	GT:AD:DP:GQ:PL	0/1:27,22:49:99:568,0,809
chr1	207646898	.	T	C	626.38	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.61;ClippingRankSum=0.00;DP=124;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=14.57;ReadPosRankSum=0.754;SOR=0.527;set=variant	GT:AD:DP:GQ:PL	0/1:10,12:22:99:393,0,253
chr1	207646923	.	G	A	892.44	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.00;DP=178;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=13.12;ReadPosRankSum=0.440;SOR=0.593;set=variant	GT:AD:DP:GQ:PL	0/1:14,17:31:99:449,0,292
chr1	207648173	.	T	C	283.70	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=3.57;ClippingRankSum=0.00;DP=99;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.91;ReadPosRankSum=1.90;SOR=0.350;set=variant	GT:AD:DP:GQ:PL	0/1:12,7:19:99:224,0,375
chr1	207653395	.	C	A	5437.16	PASS	AC=2;AF=0.889;AN=2;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;QD=28.17;SOR=0.933;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1038,102,0
chr1	207679307	.	A	G	8770.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.21;ClippingRankSum=0.00;DP=314;ExcessHet=3.0103;FS=2.756;MLEAC=17;MLEAF=0.944;MQ=54.02;MQRankSum=-2.040e+00;QD=28.20;ReadPosRankSum=-5.570e-01;SOR=0.693;set=variant	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1593,156,0
chr1	207726161	.	G	T	53.58	my_filter	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.965e+00;ClippingRankSum=0.00;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=25.00;MQRankSum=0.00;QD=4.87;ReadPosRankSum=-5.860e-01;SOR=0.330;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:7,4:11:86:86,0,175
chr1	207737312	.	T	C	148.47	PASS	AC=2;AF=0.111;AN=2;BaseQRankSum=3.20;ClippingRankSum=0.00;DP=290;ExcessHet=0.1296;FS=21.131;MLEAC=2;MLEAF=0.111;MQ=131.81;MQRankSum=0.020;QD=29.69;ReadPosRankSum=-1.814e+00;SOR=4.407;set=variant	GT:AD:DP:GQ:PL	1/1:0,5:5:15:193,15,0
chr1	207753621	.	A	G	714.35	PASS	AC=2;AF=0.167;AN=2;BaseQRankSum=1.40;ClippingRankSum=0.00;DP=170;ExcessHet=0.4012;FS=1.675;MLEAC=3;MLEAF=0.167;MQ=57.28;MQRankSum=1.47;QD=20.41;ReadPosRankSum=-2.300e-02;SOR=0.314;set=variant	GT:AD:DP:GQ:PL	1/1:0,23:23:69:655,69,0
chr1	207782916	.	A	T	33720.45	PASS	AC=2;AF=1.00;AN=2;DP=1112;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.57;SOR=0.842;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,191:191:99:1|1:207782916_A_T:8189,575,0
chr1	207782931	.	A	G	12313.15	PASS	AC=2;AF=0.278;AN=2;BaseQRankSum=-6.100e-01;ClippingRankSum=0.00;DP=731;ExcessHet=1.5127;FS=1.935;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=23.59;ReadPosRankSum=0.496;SOR=0.541;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,180:180:99:1|1:207782916_A_T:8168,569,0
chr1	207790088	.	C	G	1421.34	PASS	AC=2;AF=0.167;AN=2;BaseQRankSum=-1.147e+00;ClippingRankSum=0.00;DP=319;ExcessHet=0.4012;FS=7.509;MLEAC=3;MLEAF=0.167;MQ=59.36;MQRankSum=-1.460e+00;QD=21.54;ReadPosRankSum=-4.780e-01;SOR=1.475;set=variant	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1306,117,0
chr1	207795320	.	A	G	9900.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.060e-01;ClippingRankSum=0.00;DP=381;ExcessHet=3.0103;FS=2.285;MLEAC=17;MLEAF=0.944;MQ=59.86;MQRankSum=0.875;QD=25.99;ReadPosRankSum=0.579;SOR=0.502;set=variant	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1551,156,0
chr1	209799253	.	A	G	16277.60	PASS	AC=2;AF=0.889;AN=2;DP=545;ExcessHet=0.1296;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;QD=32.30;SOR=1.230;set=variant	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2962,267,0
chr1	209800230	.	C	T	10390.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;ClippingRankSum=0.00;DP=844;ExcessHet=3.4788;FS=0.543;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.76;ReadPosRankSum=0.126;SOR=0.741;set=variant	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4362,476,0
chr1	209801519	.	C	T	1533.62	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=1.14;ClippingRankSum=0.00;DP=223;ExcessHet=0.8432;FS=1.040;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=20.72;ReadPosRankSum=1.91;SOR=0.597;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1085,108,0
chr1	209823354	.	G	A	4483.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-9.800e-02;ClippingRankSum=0.00;DP=405;ExcessHet=2.5097;FS=3.080;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=17.51;ReadPosRankSum=0.617;SOR=0.517;set=variant	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2264,240,0
chr1	210334665	.	GTTAATT	G	8944.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-6.380e-01;ClippingRankSum=0.00;DP=540;ExcessHet=11.4027;FS=0.522;MLEAC=7;MLEAF=0.389;MQ=59.48;MQRankSum=0.289;QD=19.70;ReadPosRankSum=0.232;SOR=0.779;set=variant2	GT:AD:DP:GQ:PL	0/1:67,55:122:99:2108,0,4417
chr1	210335028	.	T	C	8387.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=2.88;ClippingRankSum=0.00;DP=827;ExcessHet=11.4027;FS=1.172;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=11.14;ReadPosRankSum=0.269;SOR=0.590;set=variant	GT:AD:DP:GQ:PL	0/1:81,68:149:99:1940,0,2125
chr1	210335066	.	G	A	6383.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-2.671e+00;ClippingRankSum=0.00;DP=771;ExcessHet=11.4027;FS=0.587;MLEAC=7;MLEAF=0.389;MQ=59.99;MQRankSum=0.00;QD=9.25;ReadPosRankSum=0.582;SOR=0.625;set=variant	GT:AD:DP:GQ:PL	0/1:83,72:155:99:1722,0,2269
chr1	210337043	.	A	G	14858.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=2.70;ClippingRankSum=0.00;DP=622;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.12;ReadPosRankSum=-2.560e-01;SOR=0.747;set=variant	GT:AD:DP:GQ:PL	0/1:83,53:136:99:1385,0,2073
chr1	212788567	.	C	T	3536.79	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.00;DP=237;ExcessHet=0.3904;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=21.44;ReadPosRankSum=0.288;SOR=0.720;set=variant	GT:AD:DP:GQ:PL	0/1:18,14:32:99:327,0,440
chr1	213068404	.	T	C	7910.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=2.03;ClippingRankSum=0.00;DP=261;ExcessHet=3.2736;FS=0.807;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=30.43;ReadPosRankSum=1.72;SOR=0.558;set=variant	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1792,147,0
chr1	214542819	.	T	C	7553.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=2.52;ClippingRankSum=0.00;DP=424;ExcessHet=2.5097;FS=0.913;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=21.46;ReadPosRankSum=-4.200e-02;SOR=0.758;set=variant	GT:AD:DP:GQ:PL	0/1:34,27:61:99:765,0,926
chr1	214564340	.	T	C	3320.15	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=1.58;ClippingRankSum=0.00;DP=213;ExcessHet=1.5127;FS=2.876;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=18.76;ReadPosRankSum=-1.324e+00;SOR=0.965;set=variant	GT:AD:DP:GQ:PL	0/1:24,21:45:99:521,0,534
chr1	215848641	.	T	C	17879.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-4.490e-01;ClippingRankSum=0.00;DP=843;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=21.34;ReadPosRankSum=1.35;SOR=0.730;set=variant	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4223,429,0
chr1	216172380	.	A	G	366.02	PASS	AC=2;AF=0.500;AN=2;DP=19;ExcessHet=0.1902;FS=0.000;MLEAC=5;MLEAF=0.625;MQ=51.38;QD=33.27;SOR=2.494;set=variant	GT:AD:DP:GQ:PL	1/1:0,8:8:24:286,24,0
chr1	216348764	.	C	T	2603.50	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-8.840e-01;ClippingRankSum=0.00;DP=182;ExcessHet=11.4027;FS=3.034;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=14.96;ReadPosRankSum=-4.500e-02;SOR=0.463;set=variant	GT:AD:DP:GQ:PL	0/1:9,18:27:99:505,0,286
chr1	216371934	.	A	C	1602.83	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=3.22;ClippingRankSum=0.00;DP=152;ExcessHet=8.3924;FS=2.568;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=16.19;ReadPosRankSum=0.141;SOR=1.110;set=variant	GT:AD:DP:GQ:PL	0/1:20,23:43:99:745,0,519
chr1	216496947	.	G	A	4102.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.00;DP=446;ExcessHet=0.9154;FS=1.395;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.45;ReadPosRankSum=1.53;SOR=0.794;set=variant	GT:AD:DP:GQ:PL	0/1:48,35:83:99:790,0,1197
chr1	216592003	.	T	C	8840.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-8.780e-01;ClippingRankSum=0.00;DP=596;ExcessHet=1.8603;FS=0.577;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.57;ReadPosRankSum=0.818;SOR=0.769;set=variant	GT:AD:DP:GQ:PL	0/1:61,61:122:99:1524,0,1552
chr1	216595306	.	C	T	9100.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-8.800e-01;ClippingRankSum=0.00;DP=598;ExcessHet=0.9154;FS=0.565;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.40;ReadPosRankSum=-5.860e-01;SOR=0.653;set=variant	GT:AD:DP:GQ:PL	0/1:76,52:128:99:1085,0,1912
chr1	220369745	.	TA	T	3477.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060e-01;ClippingRankSum=0.00;DP=446;ExcessHet=11.6816;FS=2.760;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=10.14;ReadPosRankSum=0.331;SOR=0.566;set=variant2	GT:AD:DP:GQ:PL	0/1:48,11:65:82:82,0,1191
chr1	221057646	.	C	T	1970.84	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-5.790e-01;ClippingRankSum=0.00;DP=125;ExcessHet=0.3904;FS=3.023;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=29.82;ReadPosRankSum=0.389;SOR=2.066;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,14:14:48:1|1:221057646_C_T:704,48,0
chr1	221057662	.	G	A	2363.79	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-2.152e+00;ClippingRankSum=0.00;DP=161;ExcessHet=0.3904;FS=1.745;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=32.83;ReadPosRankSum=0.384;SOR=1.275;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,24:24:72:1|1:221057646_C_T:944,72,0
chr1	222798106	.	G	A	9790.45	PASS	AC=2;AF=1.00;AN=2;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.89;SOR=0.794;set=variant	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1731,174,0
chr1	222802006	.	A	G	13921.45	PASS	AC=2;AF=1.00;AN=2;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.74;SOR=0.873;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2517,204,0
chr1	222802376	.	A	G	17395.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.54;ClippingRankSum=0.00;DP=638;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=27.97;ReadPosRankSum=0.072;SOR=0.713;set=variant	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3776,304,0
chr1	222802926	.	C	T	22424.45	PASS	AC=2;AF=1.00;AN=2;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.36;SOR=0.774;set=variant	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3704,340,0
chr1	222803204	.	A	G	21286.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=3.64;ClippingRankSum=0.00;DP=853;ExcessHet=3.8535;FS=2.355;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=25.58;ReadPosRankSum=1.35;SOR=0.890;set=variant	GT:AD:DP:GQ:PL	1/1:0,150:150:99:5035,451,0
chr1	222833601	.	T	C	12387.45	PASS	AC=2;AF=1.00;AN=2;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.71;SOR=0.798;set=variant	GT:AD:DP:GQ:PL	1/1:0,29:29:87:927,87,0
chr1	223116240	.	G	A	1145.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=2.69;ClippingRankSum=0.00;DP=190;ExcessHet=3.8535;FS=6.181;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=18.18;ReadPosRankSum=-1.100e-01;SOR=2.163;set=variant	GT:AD:DP:GQ:PL	0/1:11,18:29:99:553,0,287
chr1	223177574	.	A	G	525.55	PASS	AC=1;AF=0.286;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.00;DP=75;ExcessHet=5.5328;FS=0.000;MLEAC=4;MLEAF=0.286;MQ=55.64;MQRankSum=0.00;QD=12.22;ReadPosRankSum=-6.190e-01;SOR=0.582;set=variant	GT:AD:DP:GQ:PL	0/1:8,4:12:99:121,0,264
chr1	223178561	.	A	C	532.86	PASS	AC=1;AF=0.250;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.00;DP=55;ExcessHet=1.7609;FS=0.000;MLEAC=6;MLEAF=0.375;MQ=60.00;MQRankSum=0.00;QD=19.03;ReadPosRankSum=0.272;SOR=0.604;set=variant	GT:AD:DP:GQ:PL	0/1:4,6:10:99:165,0,118
chr1	223283910	.	A	G	10367.45	PASS	AC=2;AF=1.00;AN=2;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.13;SOR=0.699;set=variant	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1834,180,0
chr1	223284528	.	A	G	3389.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.86;ClippingRankSum=0.00;DP=551;ExcessHet=3.8535;FS=4.311;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.40;ReadPosRankSum=0.059;SOR=0.917;set=variant	GT:AD:DP:GQ:PL	0/1:85,59:144:99:1603,0,2091
chr1	223284599	.	T	C	12106.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=2.80;ClippingRankSum=0.00;DP=1013;ExcessHet=6.2536;FS=1.112;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=0.696;SOR=0.589;set=variant	GT:AD:DP:GQ:PL	0/1:123,87:210:99:2233,0,3062
chr1	225600351	.	TA	T	256.86	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-8.330e-01;ClippingRankSum=0.00;DP=117;ExcessHet=7.2016;FS=9.949;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=5.14;ReadPosRankSum=0.983;SOR=0.072;set=variant2	GT:AD:DP:GQ:PL	0/1:11,7:21:65:65,0,280
chr1	225607144	.	C	T	4766.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.73;ClippingRankSum=0.00;DP=170;ExcessHet=3.2736;FS=3.876;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=28.04;ReadPosRankSum=1.74;SOR=1.333;set=variant	GT:AD:DP:GQ:PL	1/1:2,30:32:47:979,47,0
chr1	225609884	.	A	G	13294.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.00;DP=518;ExcessHet=3.2736;FS=0.903;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.92;ReadPosRankSum=0.784;SOR=0.871;set=variant	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2332,219,0
chr1	225611661	.	C	T	5194.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-6.030e-01;ClippingRankSum=0.00;DP=277;ExcessHet=4.8226;FS=2.344;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=19.24;ReadPosRankSum=0.448;SOR=0.889;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:966,96,0
chr1	226019633	.	T	C	5320.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=3.09;ClippingRankSum=0.00;DP=353;ExcessHet=1.8603;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=18.93;ReadPosRankSum=-5.220e-01;SOR=0.679;set=variant	GT:AD:DP:GQ:PL	0/1:36,25:61:99:605,0,882
chr1	226555302	.	A	G	2099.20	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.61;ClippingRankSum=0.00;DP=133;ExcessHet=0.2709;FS=1.336;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=26.57;ReadPosRankSum=1.21;SOR=1.051;set=variant	GT:AD:DP:GQ:PL	1/1:0,16:16:48:516,48,0
chr1	226573364	.	A	G	7079.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.00;DP=406;ExcessHet=0.9154;FS=0.507;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=21.78;ReadPosRankSum=-6.830e-01;SOR=0.744;set=variant	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2001,210,0
chr1	226589958	.	G	A	5648.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.81;ClippingRankSum=0.00;DP=408;ExcessHet=0.2709;FS=1.552;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=18.89;ReadPosRankSum=0.210;SOR=0.799;set=variant	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1553,168,0
chr1	227069677	.	T	C	5162.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-5.100e-01;ClippingRankSum=0.00;DP=340;ExcessHet=2.5097;FS=2.103;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=17.27;ReadPosRankSum=-3.460e-01;SOR=0.834;set=variant	GT:AD:DP:GQ:PL	0/1:41,19:60:99:343,0,983
chr1	227069737	.	C	T	1185.80	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.00;DP=118;ExcessHet=1.4371;FS=0.832;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.95;ReadPosRankSum=0.696;SOR=0.818;set=variant	GT:AD:DP:GQ:PL	0/1:20,9:29:99:165,0,506
chr1	227071525	.	C	T	6536.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.00;DP=542;ExcessHet=1.8603;FS=0.552;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=15.67;ReadPosRankSum=-4.750e-01;SOR=0.626;set=variant	GT:AD:DP:GQ:PL	0/1:45,42:87:99:887,0,950
chr1	227172290	.	C	T	1628.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-4.880e-01;ClippingRankSum=0.00;DP=420;ExcessHet=3.2736;FS=0.575;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.64;ReadPosRankSum=0.026;SOR=0.744;set=variant	GT:AD:DP:GQ:PL	0/1:66,44:110:99:872,0,1535
chr1	227174145	.	T	C	953.41	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.00;DP=118;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=17.66;ReadPosRankSum=0.319;SOR=0.954;set=variant	GT:AD:DP:GQ:PL	0/1:5,11:16:99:346,0,146
chr1	227174210	.	T	C	1643.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.00;DP=321;ExcessHet=3.8535;FS=2.416;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-3.100e-01;SOR=0.479;set=variant	GT:AD:DP:GQ:PL	0/1:21,24:45:99:615,0,526
chr1	228399482	.	C	G	1056.31	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-2.369e+00;ClippingRankSum=0.00;DP=57;ExcessHet=1.7609;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=22.01;ReadPosRankSum=-9.210e-01;SOR=1.863;set=variant	GT:AD:DP:GQ:PL	1/1:0,12:12:36:417,36,0
chr1	228399766	.	T	C	10885.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.00;DP=613;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=19.23;ReadPosRankSum=-1.400e-02;SOR=0.699;set=variant	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3295,330,0
chr1	228402047	.	A	G	14606.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.00;DP=756;ExcessHet=2.5097;FS=0.565;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.37;ReadPosRankSum=0.316;SOR=0.655;set=variant	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3575,315,0
chr1	228402121	.	A	G	12067.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=1.82;ClippingRankSum=0.00;DP=598;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=21.43;ReadPosRankSum=-3.090e-01;SOR=0.754;set=variant	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2888,276,0
chr1	228431095	.	A	G	5100.47	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.00;DP=291;ExcessHet=3.9991;FS=1.728;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.39;ReadPosRankSum=0.237;SOR=0.565;set=variant	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1370,99,0
chr1	228433217	.	A	G	6594.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-3.590e-01;ClippingRankSum=0.00;DP=386;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=59.40;MQRankSum=-8.160e-01;QD=19.12;ReadPosRankSum=1.27;SOR=0.703;set=variant	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2040,216,0
chr1	228434395	.	T	C	8021.47	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-8.130e-01;ClippingRankSum=0.00;DP=562;ExcessHet=3.9991;FS=0.546;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=15.70;ReadPosRankSum=0.695;SOR=0.646;set=variant	GT:AD:DP:GQ:PL	1/1:4,97:101:99:2587,204,0
chr1	228434467	.	T	C	4028.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.00;DP=224;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=20.34;ReadPosRankSum=-8.630e-01;SOR=0.758;set=variant	GT:AD:DP:GQ:PL	1/1:3,36:39:32:982,32,0
chr1	228444565	.	T	A	8971.45	PASS	AC=2;AF=1.00;AN=2;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.32;SOR=1.848;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1145,108,0
chr1	228451826	.	C	T	4011.15	PASS	AC=2;AF=0.278;AN=2;BaseQRankSum=-2.031e+00;ClippingRankSum=0.00;DP=335;ExcessHet=1.5127;FS=2.375;MLEAC=5;MLEAF=0.278;MQ=59.79;MQRankSum=0.00;QD=20.78;ReadPosRankSum=0.766;SOR=0.497;set=variant	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2574,264,0
chr1	228464248	.	T	G	6731.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.00;DP=439;ExcessHet=1.5127;FS=4.253;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=16.70;ReadPosRankSum=0.563;SOR=0.741;set=variant	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1476,153,0
chr1	228464276	.	T	C	5098.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.00;DP=387;ExcessHet=2.5097;FS=3.474;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=14.53;ReadPosRankSum=1.18;SOR=0.883;set=variant	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1401,141,0
chr1	228468458	.	G	A	1630.16	PASS	AC=2;AF=0.278;AN=2;BaseQRankSum=1.99;ClippingRankSum=0.00;DP=169;ExcessHet=1.5127;FS=18.378;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=20.63;ReadPosRankSum=1.22;SOR=2.818;set=variant	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1070,99,0
chr1	228470995	.	G	T	1358.18	PASS	AC=2;AF=0.278;AN=2;BaseQRankSum=-1.611e+00;ClippingRankSum=0.00;DP=145;ExcessHet=1.5127;FS=3.108;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=23.42;ReadPosRankSum=-1.282e+00;SOR=0.356;set=variant	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1005,87,0
chr1	228475848	.	G	A	833.95	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-1.272e+00;ClippingRankSum=0.00;DP=225;ExcessHet=1.3263;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=15.44;ReadPosRankSum=0.804;SOR=0.596;set=variant	GT:AD:DP:GQ:PL	1/1:0,21:21:63:603,63,0
chr1	228480282	.	A	G	6449.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.00;DP=313;ExcessHet=1.5127;FS=6.007;MLEAC=13;MLEAF=0.722;MQ=59.85;MQRankSum=0.00;QD=23.89;ReadPosRankSum=-3.810e-01;SOR=0.321;set=variant	GT:AD:DP:GQ:PL	1/1:2,53:55:99:1506,116,0
chr1	228482010	.	C	T	2624.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=1.42;ClippingRankSum=0.00;DP=341;ExcessHet=2.5097;FS=1.107;MLEAC=6;MLEAF=0.333;MQ=59.62;MQRankSum=-8.680e-01;QD=13.32;ReadPosRankSum=2.75;SOR=0.784;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,47:47:99:.:.:1319,141,0
chr1	228494790	.	G	A	4103.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.00;DP=488;ExcessHet=2.5097;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.82;ReadPosRankSum=0.637;SOR=0.669;set=variant	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1965,210,0
chr1	228503677	.	A	G	12109.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-1.102e+00;ClippingRankSum=0.00;DP=576;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.68;ReadPosRankSum=0.671;SOR=0.704;set=variant	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2413,237,0
chr1	228504472	.	T	C	13469.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=1.51;ClippingRankSum=0.00;DP=698;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=21.35;ReadPosRankSum=-3.590e-01;SOR=0.678;set=variant	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3251,327,0
chr1	228504670	.	C	T	1677.96	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=1.57;ClippingRankSum=0.00;DP=148;ExcessHet=2.5097;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=20.46;ReadPosRankSum=0.464;SOR=0.646;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1040,93,0
chr1	228505668	.	C	G	20123.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.00;DP=855;ExcessHet=1.5127;FS=0.689;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=24.75;ReadPosRankSum=-1.202e+00;SOR=0.592;set=variant	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4820,447,0
chr1	228505699	.	T	C	25674.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-3.830e-01;ClippingRankSum=0.00;DP=1207;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.09;ReadPosRankSum=0.158;SOR=0.683;set=variant	GT:AD:DP:GQ:PL	1/1:0,198:198:99:5775,594,0
chr1	228509427	.	A	G	10421.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=2.11;ClippingRankSum=0.00;DP=431;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=27.00;ReadPosRankSum=0.517;SOR=0.662;set=variant	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3046,264,0
chr1	228520973	.	C	G	3657.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.00;DP=399;ExcessHet=2.5097;FS=0.460;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.12;ReadPosRankSum=-2.600e-02;SOR=0.756;set=variant	GT:AD:DP:GQ:PL	1/1:4,62:66:99:1714,99,0
chr1	228523005	.	T	TG	48.65	PASS	AC=2;AF=0.111;AN=2;DP=26;ExcessHet=0.1472;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;QD=16.22;SOR=2.833;set=variant2	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr1	228524961	.	C	A	4221.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-7.540e-01;ClippingRankSum=0.00;DP=378;ExcessHet=2.5097;FS=3.301;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=19.10;ReadPosRankSum=2.05;SOR=0.932;set=variant	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2559,246,0
chr1	228526665	.	T	C	6193.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.00;DP=534;ExcessHet=0.9154;FS=3.899;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=17.75;ReadPosRankSum=1.56;SOR=0.511;set=variant	GT:AD:DP:GQ:PL	1/1:2,99:101:99:2710,253,0
chr1	228528563	.	C	G	5609.08	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.00;DP=434;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=18.09;ReadPosRankSum=-2.030e-01;SOR=0.710;set=variant	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2357,246,0
chr1	228560139	.	A	G	25035.45	PASS	AC=2;AF=1.00;AN=2;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.35;SOR=0.766;set=variant	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3506,325,0
chr1	228612838	.	G	T	18032.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-9.930e-01;ClippingRankSum=0.00;DP=792;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=23.09;ReadPosRankSum=1.64;SOR=0.731;set=variant	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3763,396,0
chr1	229568632	.	A	G	1699.16	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-2.217e+00;ClippingRankSum=0.00;DP=149;ExcessHet=1.5127;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=21.24;ReadPosRankSum=-1.120e-01;SOR=0.668;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:19,9:28:99:0|1:229568632_A_G:321,0,1290
chr1	229568637	.	C	G	1673.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-2.306e+00;ClippingRankSum=0.00;DP=144;ExcessHet=1.5127;FS=0.931;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=21.45;ReadPosRankSum=0.160;SOR=0.540;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:18,10:28:99:0|1:229568632_A_G:351,0,1287
chr1	230384937	.	T	C	5703.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.00;DP=416;ExcessHet=0.9154;FS=5.480;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=21.94;ReadPosRankSum=-2.510e-01;SOR=0.581;set=variant	GT:AD:DP:GQ:PL	0/1:21,46:67:99:1144,0,396
chr1	230384970	.	G	A	1231.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-9.500e-02;ClippingRankSum=0.00;DP=440;ExcessHet=3.8535;FS=1.932;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=6.92;ReadPosRankSum=1.83;SOR=0.711;set=variant	GT:AD:DP:GQ:PL	0/1:56,25:81:99:467,0,1366
chr1	230841687	.	T	C	10219.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=2.53;ClippingRankSum=0.00;DP=313;ExcessHet=3.0103;FS=2.900;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=32.65;ReadPosRankSum=-9.440e-01;SOR=1.349;set=variant	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2216,186,0
chr1	230845794	.	A	G	7810.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.00;DP=392;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.31;ReadPosRankSum=0.505;SOR=0.718;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2078,204,0
chr1	230845977	.	G	A	3077.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.060e-01;ClippingRankSum=0.00;DP=518;ExcessHet=3.8535;FS=5.772;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.79;ReadPosRankSum=-3.930e-01;SOR=1.011;set=variant	GT:AD:DP:GQ:PL	0/1:63,48:111:99:1159,0,1647
chr1	231401902	.	G	A	5828.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-3.082e+00;ClippingRankSum=0.00;DP=240;ExcessHet=4.8226;FS=2.225;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=24.39;ReadPosRankSum=1.63;SOR=0.925;set=variant	GT:AD:DP:GQ:PL	0/1:15,23:38:99:643,0,449
chr1	231502230	.	TA	T	143.71	my_filter	AC=1;AF=0.167;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.00;DP=809;ExcessHet=3.8535;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=88.32;MQRankSum=0.00;QD=0.58;ReadPosRankSum=-1.460e-01;SOR=0.756;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:84,16:121:14:14,0,2720
chr1	231830295	.	G	A	5853.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-4.470e-01;ClippingRankSum=0.00;DP=420;ExcessHet=6.2536;FS=0.886;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=16.87;ReadPosRankSum=0.076;SOR=0.759;set=variant	GT:AD:DP:GQ:PL	0/1:36,33:69:99:1013,0,1041
chr1	231903010	.	C	T	2860.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-8.320e-01;ClippingRankSum=0.00;DP=330;ExcessHet=11.4027;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=10.48;ReadPosRankSum=-4.820e-01;SOR=0.708;set=variant	GT:AD:DP:GQ:PL	0/1:19,23:42:99:563,0,425
chr1	231931048	.	T	C	998.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.00;DP=251;ExcessHet=3.8535;FS=6.367;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.08;ReadPosRankSum=-1.097e+00;SOR=0.575;set=variant	GT:AD:DP:GQ:PL	0/1:26,22:48:99:487,0,573
chr1	235938388	.	TA	TAA,T	727.90	PASS	AC=1,0;AF=0.167,0.167;AN=2;BaseQRankSum=-8.800e-02;ClippingRankSum=0.00;DP=271;ExcessHet=8.3924;FS=2.119;MLEAC=3,3;MLEAF=0.167,0.167;MQ=60.17;MQRankSum=0.00;QD=4.49;ReadPosRankSum=0.638;SOR=0.521;set=variant2	GT:AD:DP:GQ:PL	0/1:18,4,3:25:17:17,0,409,24,356,557
chr1	236175327	.	C	A	7433.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-7.190e-01;ClippingRankSum=0.00;DP=451;ExcessHet=0.9154;FS=0.456;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.53;ReadPosRankSum=0.969;SOR=0.732;set=variant	GT:AD:DP:GQ:PL	0/1:40,28:68:99:657,0,1064
chr1	236175339	.	T	C	8571.61	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=2.01;ClippingRankSum=0.00;DP=393;ExcessHet=0.8432;FS=0.517;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=24.42;ReadPosRankSum=1.86;SOR=0.624;set=variant	GT:AD:DP:GQ:PL	0/1:34,24:58:99:630,0,862
chr1	236180580	.	C	G	6131.78	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-8.680e-01;ClippingRankSum=0.00;DP=318;ExcessHet=0.3904;FS=2.141;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=24.43;ReadPosRankSum=1.30;SOR=0.508;set=variant	GT:AD:DP:GQ:PL	0/1:15,22:37:99:591,0,469
chr1	236187365	.	T	C	4165.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-4.190e-01;ClippingRankSum=0.00;DP=279;ExcessHet=0.9154;FS=3.804;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.42;ReadPosRankSum=0.321;SOR=1.019;set=variant	GT:AD:DP:GQ:PL	0/1:18,18:36:99:451,0,495
chr1	236192982	.	G	A	1992.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.365e+00;ClippingRankSum=0.00;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.17;ReadPosRankSum=0.448;SOR=0.658;set=variant	GT:AD:DP:GQ:PL	0/1:101,95:196:99:2027,0,2411
chr1	236208773	.	C	T	7772.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-9.900e-01;ClippingRankSum=0.00;DP=636;ExcessHet=6.2536;FS=0.571;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=13.35;ReadPosRankSum=0.740;SOR=0.772;set=variant	GT:AD:DP:GQ:PL	0/1:62,35:97:99:828,0,1912
chr1	236557771	.	G	A	20780.45	PASS	AC=2;AF=1.00;AN=2;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.02;SOR=0.970;set=variant	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3047,303,0
chr1	236645670	.	C	T	4231.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.995e+00;ClippingRankSum=0.00;DP=606;ExcessHet=4.8226;FS=0.381;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=11.50;ReadPosRankSum=0.652;SOR=0.723;set=variant	GT:AD:DP:GQ:PL	0/1:59,65:124:99:1413,0,1441
chr1	236882303	.	T	C	11296.45	PASS	AC=2;AF=1.00;AN=2;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.62;SOR=1.227;set=variant	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1823,189,0
chr1	236883421	.	C	T	5290.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.00;DP=216;ExcessHet=3.0103;FS=2.970;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=24.49;ReadPosRankSum=3.08;SOR=0.426;set=variant	GT:AD:DP:GQ:PL	1/1:2,27:29:38:693,38,0
chr1	236902594	.	C	G	5836.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.00;DP=180;ExcessHet=3.2736;FS=2.815;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=32.43;ReadPosRankSum=0.503;SOR=1.234;set=variant	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1026,87,0
chr1	237060945	.	CT	C	682.20	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.00;DP=143;ExcessHet=13.4916;FS=1.594;MLEAC=7;MLEAF=0.389;MQ=63.84;MQRankSum=0.00;QD=7.84;ReadPosRankSum=0.226;SOR=0.529;set=variant2	GT:AD:DP:GQ:PL	0/1:11,6:17:66:66,0,207
chr1	237540615	.	A	C	914.14	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.00;DP=99;ExcessHet=2.9800;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=19.04;ReadPosRankSum=-2.100e-01;SOR=0.534;set=variant	GT:AD:DP:GQ:PL	0/1:4,10:14:77:301,0,77
chr1	237551376	.	T	A	4680.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=1.19;ClippingRankSum=0.00;DP=242;ExcessHet=0.8432;FS=1.683;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=23.40;ReadPosRankSum=-3.460e-01;SOR=0.892;set=variant	GT:AD:DP:GQ:PL	1/1:0,28:28:84:800,84,0
chr1	237586384	.	T	C	648.18	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.00;DP=138;ExcessHet=1.5127;FS=1.209;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=12.23;ReadPosRankSum=-3.440e-01;SOR=0.490;set=variant	GT:AD:DP:GQ:PL	0/1:10,4:14:99:123,0,293
chr1	237617757	.	C	T	3383.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-5.850e-01;ClippingRankSum=0.00;DP=229;ExcessHet=0.9154;FS=2.956;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.69;ReadPosRankSum=0.647;SOR=0.474;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1430,150,0
chr1	237711797	.	A	G	12273.45	PASS	AC=2;AF=1.00;AN=2;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=59.96;QD=29.15;SOR=0.747;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1735,171,0
chr1	237801770	.	T	C	21545.45	PASS	AC=2;AF=1.00;AN=2;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.60;SOR=1.182;set=variant	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3421,330,0
chr1	237863718	.	T	G	9184.45	PASS	AC=2;AF=1.00;AN=2;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.82;SOR=0.891;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1543,150,0
chr1	237881770	.	C	T	7813.45	PASS	AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.94;SOR=0.851;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1150,108,0
chr1	237890437	.	C	T	6308.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;ClippingRankSum=0.00;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=28.29;ReadPosRankSum=-4.670e-01;SOR=0.512;set=variant	GT:AD:DP:GQ:PL	1/1:0,25:25:75:759,75,0
chr1	237957161	.	A	G	4578.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.31;ClippingRankSum=0.00;DP=188;ExcessHet=0.4012;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=29.73;ReadPosRankSum=0.120;SOR=0.527;set=variant	GT:AD:DP:GQ:PL	1/1:0,26:26:78:787,78,0
chr1	240255568	.	GGGC	G	12107.86	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=1.39;ClippingRankSum=0.00;DP=369;ExcessHet=3.0103;FS=1.811;MLEAC=17;MLEAF=0.944;MQ=60.29;MQRankSum=1.40;QD=33.93;ReadPosRankSum=1.74;SOR=0.990;set=variant2	GT:AD:DP:GQ:PL	0/1:26,28:54:99:971,0,1035
chr1	240256822	.	C	A	2482.15	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.55;ClippingRankSum=0.00;DP=172;ExcessHet=0.5153;FS=10.617;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=25.07;ReadPosRankSum=0.371;SOR=1.304;set=variant	GT:AD:DP:GQ:PL	0/1:13,19:32:99:623,0,318
chr1	240341268	.	A	G	964.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.77;ClippingRankSum=0.00;DP=287;ExcessHet=3.8535;FS=0.748;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.55;ReadPosRankSum=-7.980e-01;SOR=0.600;set=variant	GT:AD:DP:GQ:PL	0/1:22,15:37:99:375,0,542
chr1	240370913	.	TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	T	267.80	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.00;DP=102;ExcessHet=3.2736;FS=2.392;MLEAC=1;MLEAF=0.056;MQ=59.96;MQRankSum=-7.220e-01;QD=15.75;ReadPosRankSum=0.796;SOR=1.828;set=variant2	GT:AD:DP:GQ:PL	0/1:9,8:17:99:309,0,391
chr1	240370985	.	C	T	134.43	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.383e+00;ClippingRankSum=0.00;DP=49;ExcessHet=3.6798;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=22.41;ReadPosRankSum=-2.100e-01;SOR=2.303;set=variant	GT:AD:DP:GQ:PL	0/1:1,5:6:22:166,0,22
chr1	240492734	.	G	A	3818.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-4.660e-01;ClippingRankSum=0.00;DP=469;ExcessHet=8.3924;FS=8.280;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.20;ReadPosRankSum=0.318;SOR=1.076;set=variant	GT:AD:DP:GQ:PL	0/1:29,29:58:99:743,0,799
chr1	240975213	.	T	C	3523.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.00;DP=322;ExcessHet=3.9991;FS=0.497;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.32;ReadPosRankSum=0.106;SOR=0.639;set=variant	GT:AD:DP:GQ:PL	0/1:26,30:56:99:747,0,549
chr1	242030151	.	A	G	8742.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-4.400e-02;ClippingRankSum=0.00;DP=395;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=22.89;ReadPosRankSum=1.34;SOR=0.726;set=variant	GT:AD:DP:GQ:PL	0/1:26,37:63:99:933,0,606
chr1	242042301	.	G	A	6007.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-1.488e+00;ClippingRankSum=0.00;DP=525;ExcessHet=2.5097;FS=4.306;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=16.73;ReadPosRankSum=0.496;SOR=0.502;set=variant	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1254,0,1137
chr1	242042545	.	A	G	851.95	PASS	AC=1;AF=0.438;AN=2;BaseQRankSum=0.00;ClippingRankSum=0.00;DP=44;ExcessHet=0.7918;FS=0.000;MLEAC=10;MLEAF=0.625;MQ=60.00;MQRankSum=0.00;QD=34.08;ReadPosRankSum=-4.040e-01;SOR=5.058;set=variant	GT:AD:DP:GQ:PL	0/1:1,10:11:6:352,0,6
chr1	242045275	.	C	T	13102.45	PASS	AC=2;AF=1.00;AN=2;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.12;SOR=1.099;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,71:71:99:.:.:2176,213,0
chr1	243493907	.	A	T	3430.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-5.850e-01;ClippingRankSum=0.00;DP=432;ExcessHet=8.3924;FS=5.020;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=10.52;ReadPosRankSum=-9.510e-01;SOR=0.477;set=variant	GT:AD:DP:GQ:PL	0/1:37,25:62:99:544,0,807
chr1	243579112	.	G	A	3376.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.407e+00;ClippingRankSum=0.00;DP=305;ExcessHet=3.9991;FS=1.161;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.78;ReadPosRankSum=0.257;SOR=0.809;set=variant	GT:AD:DP:GQ:PL	0/1:21,21:42:99:486,0,555
chr1	245027349	.	C	T	8307.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-2.850e-01;ClippingRankSum=0.00;DP=623;ExcessHet=1.8603;FS=6.030;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=17.06;ReadPosRankSum=2.08;SOR=0.417;set=variant	GT:AD:DP:GQ:PL	0/1:70,48:118:99:1350,0,1910
chr1	246021941	.	T	C	5586.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.00;DP=477;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=15.02;ReadPosRankSum=0.288;SOR=0.704;set=variant	GT:AD:DP:GQ:PL	0/1:56,36:92:99:830,0,1327
chr1	246670481	.	C	G	32332.45	PASS	AC=2;AF=1.00;AN=2;DP=1080;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.10;SOR=0.758;set=variant	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4460,426,0
chr1	247587477	.	G	A	7678.47	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-3.280e+00;ClippingRankSum=0.00;DP=368;ExcessHet=3.9991;FS=5.155;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=22.32;ReadPosRankSum=0.115;SOR=0.463;set=variant	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2478,228,0
chr1	247587531	.	A	G	12679.45	PASS	AC=2;AF=1.00;AN=2;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.49;SOR=1.157;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2505,204,0
chr2	1079320	.	C	T	10712.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=1.37;ClippingRankSum=0.00;DP=547;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=21.82;ReadPosRankSum=-7.360e-01;SOR=0.710;set=variant	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2266,237,0
chr2	1320143	.	C	T	5812.17	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-5.310e-01;ClippingRankSum=0.00;DP=336;ExcessHet=6.2839;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=17.99;ReadPosRankSum=-1.670e-01;SOR=0.689;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:989,93,0
chr2	1418192	.	C	G	3419.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.56;ClippingRankSum=0.00;DP=456;ExcessHet=2.5097;FS=0.896;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.83;ReadPosRankSum=2.16;SOR=0.766;set=variant	GT:AD:DP:GQ:PL	0/1:52,19:71:99:441,0,1335
chr2	1460004	.	G	T	1522.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.00;DP=198;ExcessHet=0.8432;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=22.07;ReadPosRankSum=-4.050e-01;SOR=0.569;set=variant	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1239,126,0
chr2	1497803	.	C	T	3895.48	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-3.160e-01;ClippingRankSum=0.00;DP=325;ExcessHet=3.9991;FS=4.947;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.90;ReadPosRankSum=-7.510e-01;SOR=0.433;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1497,150,0
chr2	1499899	.	C	T	8846.08	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.00;DP=687;ExcessHet=1.8603;FS=2.539;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=15.68;ReadPosRankSum=0.797;SOR=0.901;set=variant	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2739,282,0
chr2	1499927	.	A	C	7849.08	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=1.28;ClippingRankSum=0.00;DP=587;ExcessHet=1.8603;FS=2.546;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=16.84;ReadPosRankSum=-3.630e-01;SOR=0.898;set=variant	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2366,228,0
chr2	1520676	.	T	C	7006.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.17;ClippingRankSum=0.00;DP=542;ExcessHet=6.2536;FS=0.535;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=14.36;ReadPosRankSum=0.318;SOR=0.776;set=variant	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2303,231,0
chr2	1647171	.	T	C	10062.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.63;ClippingRankSum=0.00;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.17;ReadPosRankSum=1.26;SOR=0.718;set=variant	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1531,138,0
chr2	1652822	.	T	G	12415.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.915e+00;ClippingRankSum=0.00;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.53;ReadPosRankSum=0.228;SOR=0.662;set=variant	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2665,273,0
chr2	1664654	.	A	G	2494.65	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-5.240e-01;ClippingRankSum=0.00;DP=107;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.99;ReadPosRankSum=-6.500e-01;SOR=0.840;set=variant	GT:AD:DP:GQ:PL	1/1:0,18:18:54:545,54,0
chr2	1842968	.	T	C,A	8290.82	PASS	AC=1,0;AF=0.056,0.278;AN=2;BaseQRankSum=1.25;ClippingRankSum=0.00;DP=921;ExcessHet=8.3924;FS=1.768;MLEAC=1,5;MLEAF=0.056,0.278;MQ=60.00;MQRankSum=0.00;QD=10.43;ReadPosRankSum=0.435;SOR=0.851;set=variant	GT:AD:DP:GQ:PL	0/1:77,0,69:146:99:1656,1887,3941,0,2054,1847
chr2	1893133	.	C	T	2424.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.647e+00;ClippingRankSum=0.00;DP=431;ExcessHet=3.8535;FS=2.479;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=12.31;ReadPosRankSum=-8.740e-01;SOR=0.531;set=variant	GT:AD:DP:GQ:PL	0/1:31,42:73:99:907,0,756
chr2	1926437	.	G	T	23947.45	PASS	AC=2;AF=1.00;AN=2;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.68;SOR=0.816;set=variant	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4541,415,0
chr2	1946914	.	A	G	4360.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.34;ClippingRankSum=0.00;DP=314;ExcessHet=6.2536;FS=0.976;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=16.64;ReadPosRankSum=0.141;SOR=0.603;set=variant	GT:AD:DP:GQ:PL	0/1:24,24:48:99:674,0,616
chr2	10188649	.	A	T	33665.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.59;ClippingRankSum=0.00;DP=1402;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.52;ReadPosRankSum=-1.381e+00;SOR=0.634;set=variant	GT:AD:DP:GQ:PL	1/1:0,233:233:99:6406,699,0
chr2	11355712	.	A	C	668.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=3.02;ClippingRankSum=0.00;DP=368;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=9.84;ReadPosRankSum=-3.980e-01;SOR=0.456;set=variant	GT:AD:DP:GQ:PL	0/1:42,26:68:99:703,0,1078
chr2	11359120	.	G	T	2834.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-4.020e-01;ClippingRankSum=0.00;DP=201;ExcessHet=0.9154;FS=2.487;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.10;ReadPosRankSum=0.746;SOR=0.967;set=variant	GT:AD:DP:GQ:PL	1/1:0,15:15:45:523,45,0
chr2	15372562	.	C	T	181.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.273e+00;ClippingRankSum=0.00;DP=248;ExcessHet=3.2736;FS=1.372;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=4.32;ReadPosRankSum=1.03;SOR=0.412;set=variant	GT:AD:DP:GQ:PL	0/1:19,6:25:91:91,0,555
chr2	15378808	.	C	G	1035.10	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-7.180e-01;ClippingRankSum=0.00;DP=212;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=16.70;ReadPosRankSum=-1.700e-02;SOR=0.761;set=variant	GT:AD:DP:GQ:PL	0/1:14,24:38:99:729,0,422
chr2	15601441	.	C	T	13010.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-9.390e-01;ClippingRankSum=0.00;DP=813;ExcessHet=1.8603;FS=4.489;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=18.72;ReadPosRankSum=0.536;SOR=0.730;set=variant	GT:AD:DP:GQ:PL	0/1:82,51:133:99:1181,0,2164
chr2	15607842	.	T	C	11836.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.71;ClippingRankSum=0.00;DP=653;ExcessHet=1.8603;FS=0.593;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.44;ReadPosRankSum=1.55;SOR=0.613;set=variant	GT:AD:DP:GQ:PL	0/1:52,57:109:99:1491,0,1262
chr2	15614404	.	T	C	3819.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.49;ClippingRankSum=0.00;DP=277;ExcessHet=1.8603;FS=1.097;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=18.10;ReadPosRankSum=0.916;SOR=0.730;set=variant	GT:AD:DP:GQ:PL	0/1:28,17:45:99:454,0,676
chr2	15615910	.	A	G	10231.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.00;DP=763;ExcessHet=1.8603;FS=4.162;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.16;ReadPosRankSum=0.00;SOR=0.981;set=variant	GT:AD:DP:GQ:PL	0/1:75,52:127:99:1219,0,1969
chr2	15616013	.	C	G	3914.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=3.44;ClippingRankSum=0.00;DP=418;ExcessHet=1.8603;FS=43.278;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=13.54;ReadPosRankSum=0.490;SOR=2.330;set=variant	GT:AD:DP:GQ:PL	0/1:57,17:74:99:411,0,1566
chr2	15618339	.	G	A	3503.09	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.00;DP=224;ExcessHet=1.8603;FS=3.107;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=19.14;ReadPosRankSum=0.447;SOR=0.458;set=variant	GT:AD:DP:GQ:PL	0/1:16,15:31:99:376,0,454
chr2	15674686	.	T	C	5671.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.00;DP=397;ExcessHet=3.4788;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=17.95;ReadPosRankSum=0.313;SOR=0.682;set=variant	GT:AD:DP:GQ:PL	0/1:19,25:44:99:632,0,444
chr2	18112473	.	G	A	19822.45	PASS	AC=2;AF=1.00;AN=2;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.73;SOR=1.231;set=variant	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3508,339,0
chr2	18113508	.	G	A	15937.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-1.873e+00;ClippingRankSum=0.00;DP=783;ExcessHet=0.9154;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=22.70;ReadPosRankSum=1.10;SOR=0.710;set=variant	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4051,399,0
chr2	18113623	.	A	G	13047.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.00;DP=500;ExcessHet=3.2736;FS=0.870;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.57;ReadPosRankSum=1.49;SOR=0.641;set=variant	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2843,267,0
chr2	20135283	.	T	C	2408.21	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.00;DP=201;ExcessHet=1.8603;FS=2.855;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.24;ReadPosRankSum=1.60;SOR=0.977;set=variant	GT:AD:DP:GQ:PL	0/1:19,9:28:99:220,0,477
chr2	20137622	.	T	C	1578.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.200e-02;ClippingRankSum=0.00;DP=415;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.05;ReadPosRankSum=8.000e-03;SOR=0.703;set=variant	GT:AD:DP:GQ:PL	0/1:56,42:98:99:966,0,1369
chr2	20192931	.	G	A	1874.21	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-4.700e-02;ClippingRankSum=0.00;DP=208;ExcessHet=10.0405;FS=7.206;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.41;ReadPosRankSum=0.474;SOR=0.346;set=variant	GT:AD:DP:GQ:PL	0/1:20,20:40:99:476,0,536
chr2	20202929	.	C	T	4869.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.501e+00;ClippingRankSum=0.00;DP=641;ExcessHet=6.2839;FS=0.530;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.43;ReadPosRankSum=-2.360e-01;SOR=0.631;set=variant	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1079,0,1240
chr2	20205680	.	C	T	8714.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-7.500e-02;ClippingRankSum=0.00;DP=515;ExcessHet=1.8603;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.03;ReadPosRankSum=-8.200e-02;SOR=0.692;set=variant	GT:AD:DP:GQ:PL	0/1:51,49:100:99:1192,0,1400
chr2	20205848	.	G	A	13669.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.25;ClippingRankSum=0.00;DP=851;ExcessHet=1.8603;FS=0.562;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.75;ReadPosRankSum=0.911;SOR=0.753;set=variant	GT:AD:DP:GQ:PL	0/1:69,77:146:99:1785,0,1521
chr2	20823724	.	T	C	22424.45	PASS	AC=2;AF=1.00;AN=2;DP=797;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.39;SOR=0.805;set=variant	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3851,399,0
chr2	20824498	.	C	T	2754.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-2.205e+00;ClippingRankSum=0.00;DP=165;ExcessHet=1.8603;FS=2.321;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=22.95;ReadPosRankSum=0.343;SOR=0.422;set=variant	GT:AD:DP:GQ:PL	0/1:2,13:15:33:391,0,33
chr2	20824559	.	C	T	2069.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.339e+00;ClippingRankSum=0.00;DP=241;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=14.47;ReadPosRankSum=0.274;SOR=0.644;set=variant	GT:AD:DP:GQ:PL	0/1:16,7:23:99:118,0,432
chr2	20824658	.	G	A	1423.12	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.473e+00;ClippingRankSum=0.00;DP=142;ExcessHet=1.8603;FS=4.167;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=16.55;ReadPosRankSum=-5.520e-01;SOR=0.304;set=variant	GT:AD:DP:GQ:PL	0/1:12,3:15:64:64,0,382
chr2	20838318	.	G	A	7642.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-9.430e-01;ClippingRankSum=0.00;DP=665;ExcessHet=2.5097;FS=0.537;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.63;ReadPosRankSum=-2.740e-01;SOR=0.629;set=variant	GT:AD:DP:GQ:PL	0/1:52,81:133:99:1974,0,1288
chr2	20845273	.	G	A	14507.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-9.240e-01;ClippingRankSum=0.00;DP=737;ExcessHet=6.2839;FS=1.299;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=19.82;ReadPosRankSum=-1.150e-01;SOR=0.583;set=variant	GT:AD:DP:GQ:PL	0/1:62,74:136:99:1924,0,1537
chr2	21225281	.	C	T	3757.52	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.697e+00;ClippingRankSum=0.00;DP=161;ExcessHet=0.9154;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=27.23;ReadPosRankSum=0.181;SOR=0.748;set=variant	GT:AD:DP:GQ:PL	0/1:14,13:27:99:391,0,426
chr2	21225753	.	C	T	2453.61	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.22;ClippingRankSum=0.00;DP=377;ExcessHet=0.8432;FS=1.180;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=14.18;ReadPosRankSum=0.725;SOR=0.792;set=variant	GT:AD:DP:GQ:PL	0/1:49,37:86:99:946,0,1219
chr2	21231524	.	G	A	8359.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.00;DP=674;ExcessHet=0.9154;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.36;ReadPosRankSum=-2.550e-01;SOR=0.709;set=variant	GT:AD:DP:GQ:PL	0/1:97,69:166:99:1614,0,2593
chr2	21232803	.	T	C	28265.45	PASS	AC=2;AF=1.00;AN=2;DP=778;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.11;SOR=0.768;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,144:144:99:.:.:4699,433,0
chr2	21235475	.	T	C	7559.45	PASS	AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.35;SOR=2.247;set=variant	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1301,105,0
chr2	21250914	.	G	A	16937.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-2.539e+00;ClippingRankSum=0.00;DP=1006;ExcessHet=0.9154;FS=5.609;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=21.69;ReadPosRankSum=0.275;SOR=1.179;set=variant	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4812,466,0
chr2	21266751	.	C	CCAGCAG	1438.52	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=262;ExcessHet=3.7566;FS=7.818;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=19.71;ReadPosRankSum=0.571;SOR=0.223;set=variant2	GT:AD:DP:GQ:PL	0/1:25,24:53:99:975,0,1671
chr2	24475205	.	T	C	13869.45	PASS	AC=2;AF=1.00;AN=2;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.07;SOR=2.033;set=variant	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2028,159,0
chr2	24905927	.	G	C	15215.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.700e-02;ClippingRankSum=0.00;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=30.62;ReadPosRankSum=-1.363e+00;SOR=0.457;set=variant	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2033,180,0
chr2	24974945	.	T	G	30470.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-2.130e-01;ClippingRankSum=0.00;DP=1026;ExcessHet=3.0103;FS=1.430;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.87;ReadPosRankSum=1.52;SOR=0.604;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,144:144:99:.:.:4645,432,0
chr2	25046090	.	T	C	10311.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.00;DP=398;ExcessHet=3.2736;FS=0.735;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.04;ReadPosRankSum=0.768;SOR=0.608;set=variant	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1905,189,0
chr2	25047408	.	A	G	8906.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=2.11;ClippingRankSum=0.00;DP=374;ExcessHet=4.8226;FS=3.778;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=24.14;ReadPosRankSum=1.18;SOR=0.941;set=variant	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1916,168,0
chr2	25050977	.	T	C	19035.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.73;ClippingRankSum=0.00;DP=788;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.63;ReadPosRankSum=-9.290e-01;SOR=0.634;set=variant	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3815,381,0
chr2	25064157	.	G	C	4425.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-6.000e-01;ClippingRankSum=0.00;DP=422;ExcessHet=8.3924;FS=2.563;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.28;ReadPosRankSum=-2.320e-01;SOR=0.558;set=variant	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1151,0,783
chr2	25469502	.	C	T	1101.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-5.530e-01;ClippingRankSum=0.00;DP=786;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=9.18;ReadPosRankSum=0.703;SOR=0.969;set=variant	GT:AD:DP:GQ:PL	0/1:74,46:120:99:1136,0,2010
chr2	25469913	.	C	T	7011.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-1.699e+00;ClippingRankSum=0.00;DP=349;ExcessHet=1.5127;FS=1.910;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.54;ReadPosRankSum=-1.076e+00;SOR=0.554;set=variant	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1656,177,0
chr2	26455127	.	G	A	817.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.618e+00;ClippingRankSum=0.00;DP=327;ExcessHet=3.8535;FS=1.470;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=6.49;ReadPosRankSum=-5.860e-01;SOR=0.859;set=variant	GT:AD:DP:GQ:PL	0/1:36,19:55:99:355,0,953
chr2	26477125	.	G	GACT	7210.43	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.00;DP=387;ExcessHet=3.9991;FS=0.936;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=22.46;ReadPosRankSum=0.810;SOR=0.612;set=variant2	GT:AD:DP:GQ:PL	0/1:36,28:64:99:1074,0,1716
chr2	26502875	.	T	C	2273.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.45;ClippingRankSum=0.00;DP=575;ExcessHet=3.8535;FS=2.484;MLEAC=3;MLEAF=0.167;MQ=59.89;MQRankSum=0.00;QD=11.14;ReadPosRankSum=-2.840e-01;SOR=0.891;set=variant	GT:AD:DP:GQ:PL	0/1:54,39:93:99:984,0,1349
chr2	26507076	.	A	T	3753.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-7.020e-01;ClippingRankSum=0.00;DP=395;ExcessHet=3.9991;FS=3.439;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.36;ReadPosRankSum=0.062;SOR=0.929;set=variant	GT:AD:DP:GQ:PL	0/1:34,44:78:99:1071,0,795
chr2	26699126	.	C	G	11838.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-2.690e-01;ClippingRankSum=0.00;DP=560;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=21.52;ReadPosRankSum=0.067;SOR=0.763;set=variant	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2913,288,0
chr2	26699855	.	G	C	11859.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=2.08;ClippingRankSum=0.00;DP=551;ExcessHet=4.8226;FS=1.334;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=21.96;ReadPosRankSum=0.615;SOR=0.566;set=variant	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2429,240,0
chr2	26700700	.	G	A	4006.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-1.087e+00;ClippingRankSum=0.00;DP=197;ExcessHet=4.8226;FS=4.305;MLEAC=14;MLEAF=0.778;MQ=60.05;MQRankSum=0.00;QD=21.66;ReadPosRankSum=1.40;SOR=1.100;set=variant	GT:AD:DP:GQ:PL	1/1:0,20:20:60:675,60,0
chr2	26739423	.	T	C	2914.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.00;DP=344;ExcessHet=2.5097;FS=4.072;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.75;ReadPosRankSum=0.832;SOR=0.457;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:22,28:50:99:.:.:716,0,526
chr2	26741961	.	G	A	5190.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830e-01;ClippingRankSum=0.00;DP=398;ExcessHet=0.7786;FS=1.073;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=18.94;ReadPosRankSum=-4.020e-01;SOR=0.796;set=variant	GT:AD:DP:GQ:PL	0/1:26,41:67:99:984,0,548
chr2	26750769	.	G	A	5010.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.067e+00;ClippingRankSum=0.00;DP=509;ExcessHet=3.9991;FS=3.254;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.95;ReadPosRankSum=0.245;SOR=0.556;set=variant	GT:AD:DP:GQ:PL	0/1:50,38:88:99:816,0,1123
chr2	27315252	.	G	A	8489.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.00;DP=549;ExcessHet=2.5097;FS=0.566;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=16.84;ReadPosRankSum=-7.020e-01;SOR=0.625;set=variant	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2525,279,0
chr2	27589810	.	T	C	3538.49	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.00;DP=149;ExcessHet=0.9154;FS=1.076;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=28.54;ReadPosRankSum=0.846;SOR=0.977;set=variant	GT:AD:DP:GQ:PL	1/1:0,26:26:78:945,78,0
chr2	27592423	.	C	T	7533.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-1.857e+00;ClippingRankSum=0.00;DP=455;ExcessHet=0.9154;FS=3.533;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.87;ReadPosRankSum=1.03;SOR=0.512;set=variant	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1889,192,0
chr2	27730940	.	T	C	5488.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.00;DP=208;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=29.99;ReadPosRankSum=0.043;SOR=0.782;set=variant	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1523,126,0
chr2	29287926	.	C	CGCT	5833.59	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.040e-01;ClippingRankSum=0.00;DP=504;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=22.88;ReadPosRankSum=0.852;SOR=0.710;set=variant2	GT:AD:DP:GQ:PL	0/1:34,57:91:99:2237,0,1409
chr2	29294239	.	G	A	1546.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=3.38;ClippingRankSum=0.00;DP=429;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.84;ReadPosRankSum=0.492;SOR=0.671;set=variant	GT:AD:DP:GQ:PL	0/1:71,35:106:99:791,0,1736
chr2	29295016	.	A	G	7252.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-2.800e-01;ClippingRankSum=0.00;DP=913;ExcessHet=4.8226;FS=1.777;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.17;ReadPosRankSum=0.912;SOR=0.881;set=variant	GT:AD:DP:GQ:PL	0/1:124,120:244:99:2865,0,2914
chr2	29295389	.	G	A	2390.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-2.512e+00;ClippingRankSum=0.00;DP=507;ExcessHet=3.2736;FS=3.410;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=13.14;ReadPosRankSum=0.961;SOR=0.964;set=variant	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1520,0,1765
chr2	29295676	.	G	A	5604.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-9.730e-01;ClippingRankSum=0.00;DP=769;ExcessHet=4.8226;FS=5.116;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=9.92;ReadPosRankSum=-9.000e-02;SOR=1.056;set=variant	GT:AD:DP:GQ:PL	0/1:110,75:185:99:1702,0,2841
chr2	29295866	.	T	C	631.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=3.73;ClippingRankSum=0.00;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.70;ReadPosRankSum=0.480;SOR=0.725;set=variant	GT:AD:DP:GQ:PL	0/1:32,22:54:99:666,0,973
chr2	29416366	.	G	C	24039.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-3.030e-01;ClippingRankSum=0.00;DP=1208;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=21.26;ReadPosRankSum=0.938;SOR=0.682;set=variant	GT:AD:DP:GQ:PL	1/1:0,209:209:99:6667,627,0
chr2	29416481	.	T	C	9630.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=3.29;ClippingRankSum=0.00;DP=562;ExcessHet=1.8603;FS=2.984;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.45;ReadPosRankSum=0.919;SOR=0.953;set=variant	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2948,246,0
chr2	29416572	.	T	C	4519.46	PASS	AC=2;AF=1.00;AN=2;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=26.86;SOR=9.472;set=variant	GT:AD:DP:GQ:PL	1/1:0,18:18:54:721,54,0
chr2	29445458	.	G	T	4353.47	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=1.16;ClippingRankSum=0.00;DP=268;ExcessHet=3.9991;FS=5.191;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.01;ReadPosRankSum=-4.320e-01;SOR=1.044;set=variant	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1517,153,0
chr2	29543663	.	T	C	7745.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-1.180e+00;ClippingRankSum=0.00;DP=344;ExcessHet=3.8535;FS=0.547;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.76;ReadPosRankSum=-2.145e+00;SOR=0.632;set=variant	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1113,111,0
chr2	29940529	.	A	T	4567.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-3.920e-01;ClippingRankSum=0.00;DP=250;ExcessHet=3.8535;FS=1.106;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=-2.740e-01;SOR=0.746;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:904,102,0
chr2	30143499	.	G	C	4230.64	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=3.44;ClippingRankSum=0.00;DP=127;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=33.31;ReadPosRankSum=1.37;SOR=3.102;set=variant	GT:AD:DP:GQ:PL	1/1:0,23:23:69:939,69,0
chr2	30986989	.	G	T	3621.65	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.00;DP=129;ExcessHet=3.2736;FS=1.883;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=29.21;ReadPosRankSum=1.08;SOR=1.460;set=variant	GT:AD:DP:GQ:PL	1/1:0,18:18:54:570,54,0
chr2	31571786	.	A	G	4155.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.00;DP=339;ExcessHet=3.9991;FS=6.837;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=13.71;ReadPosRankSum=0.054;SOR=0.861;set=variant	GT:AD:DP:GQ:PL	0/1:32,11:43:99:290,0,833
chr2	31805706	.	G	C	7171.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-2.027e+00;ClippingRankSum=0.00;DP=237;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=30.78;ReadPosRankSum=-5.800e-01;SOR=1.107;set=variant	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1432,111,0
chr2	31805880	.	A	AG	29207.41	PASS	AC=2;AF=1.00;AN=2;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.04;QD=34.69;SOR=1.529;set=variant2	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4243,373,0
chr2	33172679	.	G	A	5765.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-3.017e+00;ClippingRankSum=0.00;DP=385;ExcessHet=1.8603;FS=7.386;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=20.96;ReadPosRankSum=0.633;SOR=1.127;set=variant	GT:AD:DP:GQ:PL	0/1:23,25:48:99:780,0,730
chr2	33412077	.	G	A	11400.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.472e+00;ClippingRankSum=0.00;DP=750;ExcessHet=3.9991;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=16.84;ReadPosRankSum=0.519;SOR=0.709;set=variant	GT:AD:DP:GQ:PL	0/1:60,49:109:99:1104,0,1537
chr2	33413640	.	G	T	5311.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.255e+00;ClippingRankSum=0.00;DP=297;ExcessHet=3.9991;FS=1.085;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.67;ReadPosRankSum=0.207;SOR=0.791;set=variant	GT:AD:DP:GQ:PL	0/1:22,25:47:99:631,0,634
chr2	33447202	.	C	T	2439	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.00;DP=339;ExcessHet=3.4788;FS=4.171;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=9.24;ReadPosRankSum=0.888;SOR=0.549;set=variant	GT:AD:DP:GQ:PL	0/1:32,15:47:99:300,0,858
chr2	33540248	.	G	A	5619.17	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-8.930e-01;ClippingRankSum=0.00;DP=355;ExcessHet=6.2839;FS=0.408;MLEAC=13;MLEAF=0.722;MQ=60.06;MQRankSum=0.00;QD=16.38;ReadPosRankSum=-5.500e-02;SOR=0.653;set=variant	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1528,165,0
chr2	33585796	.	T	C	21828.45	PASS	AC=2;AF=1.00;AN=2;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.07;SOR=1.135;set=variant	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3876,396,0
chr2	37471114	.	C	A	2049.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-4.480e-01;ClippingRankSum=0.00;DP=258;ExcessHet=2.5097;FS=1.325;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.22;ReadPosRankSum=0.00;SOR=0.839;set=variant	GT:AD:DP:GQ:PL	0/1:12,17:29:99:436,0,341
chr2	37494591	.	A	G	646.37	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.590e-01;ClippingRankSum=0.00;DP=167;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=12.93;ReadPosRankSum=0.765;SOR=0.806;set=variant	GT:AD:DP:GQ:PL	0/1:8,14:22:99:359,0,216
chr2	37505105	.	T	G	2342.60	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.00;DP=267;ExcessHet=0.9154;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=19.69;ReadPosRankSum=1.00;SOR=0.671;set=variant	GT:AD:DP:GQ:PL	0/1:20,14:34:99:343,0,457
chr2	37506939	.	A	G	6071.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.00;DP=607;ExcessHet=0.9154;FS=3.208;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.40;ReadPosRankSum=-3.460e-01;SOR=0.922;set=variant	GT:AD:DP:GQ:PL	0/1:86,30:116:99:582,0,1985
chr2	37543371	.	A	G	4669.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-2.130e-01;ClippingRankSum=0.00;DP=350;ExcessHet=1.8603;FS=2.427;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=18.24;ReadPosRankSum=0.294;SOR=0.885;set=variant	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1440,156,0
chr2	38298150	.	A	G	18882.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=3.02;ClippingRankSum=0.00;DP=669;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=29.05;ReadPosRankSum=1.05;SOR=0.635;set=variant	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3237,280,0
chr2	38298203	.	C	G	11257.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-1.479e+00;ClippingRankSum=0.00;DP=327;ExcessHet=3.2736;FS=1.105;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=34.43;ReadPosRankSum=1.13;SOR=0.980;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2252,172,0
chr2	38302177	.	C	A	5660.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-2.158e+00;ClippingRankSum=0.00;DP=556;ExcessHet=2.5097;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.08;ReadPosRankSum=0.309;SOR=0.672;set=variant	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1302,0,1429
chr2	38302390	.	G	C	2623.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.00;DP=309;ExcessHet=2.5097;FS=13.732;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.43;ReadPosRankSum=-3.300e-02;SOR=0.280;set=variant	GT:AD:DP:GQ:PL	0/1:24,25:49:99:720,0,625
chr2	39240646	.	C	T	686.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.00;DP=258;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=6.02;ReadPosRankSum=-2.100e-02;SOR=0.672;set=variant	GT:AD:DP:GQ:PL	0/1:26,13:39:99:292,0,731
chr2	43793963	.	TA	TAA,T	577.75	PASS	AC=1,0;AF=0.222,0.278;AN=2;BaseQRankSum=-2.340e-01;ClippingRankSum=0.00;DP=321;ExcessHet=22.7857;FS=2.482;MLEAC=4,5;MLEAF=0.222,0.278;MQ=60.00;MQRankSum=0.00;QD=2.51;ReadPosRankSum=0.418;SOR=0.485;set=variant2	GT:AD:DP:GQ:PL	0/1:22,8,14:44:99:198,186,876,0,325,453
chr2	44040401	.	G	C	2919.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-7.760e-01;ClippingRankSum=0.00;DP=377;ExcessHet=3.9991;FS=2.673;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=10.50;ReadPosRankSum=-3.710e-01;SOR=0.881;set=variant	GT:AD:DP:GQ:PL	0/1:34,26:60:99:666,0,1036
chr2	44071639	.	C	T	3475.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.00;DP=378;ExcessHet=3.9991;FS=4.399;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.07;ReadPosRankSum=-1.530e-01;SOR=0.847;set=variant	GT:AD:DP:GQ:PL	0/1:19,36:55:99:793,0,415
chr2	44071743	.	A	G	1873.48	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.64;ClippingRankSum=0.00;DP=203;ExcessHet=3.9991;FS=3.456;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.88;ReadPosRankSum=-1.104e+00;SOR=1.055;set=variant	GT:AD:DP:GQ:PL	0/1:11,10:21:99:308,0,256
chr2	44099433	.	C	A	4250.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.21;ClippingRankSum=0.00;DP=457;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.58;ReadPosRankSum=1.94;SOR=0.677;set=variant	GT:AD:DP:GQ:PL	0/1:60,21:81:99:420,0,1472
chr2	44101537	.	A	AT	4568.57	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-2.940e-01;ClippingRankSum=0.00;DP=228;ExcessHet=0.7786;FS=0.758;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=32.17;ReadPosRankSum=1.52;SOR=0.607;set=variant2	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,42:42:99:1|1:44101537_A_AT:1890,126,0
chr2	44101538	.	C	T	8448.45	PASS	AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.43;SOR=0.719;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,42:42:99:1|1:44101537_A_AT:1890,126,0
chr2	44104925	.	T	C	7966.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=2.99;ClippingRankSum=0.00;DP=308;ExcessHet=3.8535;FS=1.892;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=26.47;ReadPosRankSum=-7.000e-01;SOR=0.550;set=variant	GT:AD:DP:GQ:PL	0/1:19,24:43:99:757,0,451
chr2	44201376	.	T	C	2739.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.00;DP=360;ExcessHet=0.9154;FS=0.525;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.77;ReadPosRankSum=0.862;SOR=0.772;set=variant	GT:AD:DP:GQ:PL	0/1:45,12:57:99:222,0,1118
chr2	44209477	.	C	T	7923.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-4.774e+00;ClippingRankSum=0.00;DP=578;ExcessHet=3.9991;FS=2.579;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=17.57;ReadPosRankSum=-1.310e+00;SOR=0.523;set=variant	GT:AD:DP:GQ:PL	0/1:39,50:89:99:1333,0,1229
chr2	44539757	.	G	A	334.93	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.00;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=6.44;ReadPosRankSum=1.08;SOR=0.693;set=variant	GT:AD:DP:GQ:PL	0/1:34,18:52:99:369,0,806
chr2	44566504	.	TAG	T	430.64	my_filter	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.400e-01;ClippingRankSum=0.00;DP=413;ExcessHet=6.2839;FS=1.480;MLEAC=5;MLEAF=0.278;MQ=62.77;MQRankSum=0.00;QD=1.89;ReadPosRankSum=-6.460e-01;SOR=0.510;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:60,5:68:7:7,0,2045
chr2	45171842	.	A	G	15998.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=1.69;ClippingRankSum=0.00;DP=768;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=20.97;ReadPosRankSum=0.222;SOR=0.674;set=variant	GT:AD:DP:GQ:PL	0/1:74,56:130:99:1218,0,1776
chr2	46583279	.	C	CT	8566.50	my_filter	AC=1;AF=0.389;AN=2;BaseQRankSum=-6.270e-01;ClippingRankSum=0.00;DP=344;ExcessHet=11.4027;FS=290.440;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=29.85;ReadPosRankSum=-6.700e-02;SOR=2.599;set=FilteredInAll	GT:AD:DP:GQ:PGT:PID:PL	0/1:11,40:51:99:.:.:1711,0,336
chr2	48915871	.	A	G	9006.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=2.27;ClippingRankSum=0.00;DP=361;ExcessHet=3.8535;FS=11.153;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.95;ReadPosRankSum=0.365;SOR=1.350;set=variant	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2333,189,0
chr2	48921375	.	T	C	13238.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.54;ClippingRankSum=0.00;DP=532;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=25.03;ReadPosRankSum=0.910;SOR=0.657;set=variant	GT:AD:DP:GQ:PL	1/1:2,66:68:99:2193,155,0
chr2	48925746	.	C	T	1632.63	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.660e+00;ClippingRankSum=0.00;DP=100;ExcessHet=2.5225;FS=3.612;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=23.32;ReadPosRankSum=0.922;SOR=0.286;set=variant	GT:AD:DP:GQ:PL	0/1:9,5:14:99:138,0,287
chr2	49189921	.	C	T	4444.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-2.002e+00;ClippingRankSum=0.00;DP=229;ExcessHet=2.5097;FS=1.751;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=22.11;ReadPosRankSum=0.860;SOR=0.979;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1199,108,0
chr2	49191041	.	C	T	3211.82	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-2.860e-01;ClippingRankSum=0.00;DP=226;ExcessHet=8.3924;FS=2.426;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=15.22;ReadPosRankSum=-5.860e-01;SOR=0.878;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1094,108,0
chr2	58388696	.	A	G	4398.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.00;DP=264;ExcessHet=6.2839;FS=0.976;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=16.79;ReadPosRankSum=0.266;SOR=0.631;set=variant	GT:AD:DP:GQ:PL	0/1:29,18:47:99:382,0,682
chr2	60687959	.	A	G	15764.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=2.17;ClippingRankSum=0.00;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=30.55;ReadPosRankSum=1.86;SOR=0.865;set=variant	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2779,264,0
chr2	62052380	.	A	G	6002.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=1.02;ClippingRankSum=0.00;DP=350;ExcessHet=3.9991;FS=6.624;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.53;ReadPosRankSum=0.00;SOR=0.663;set=variant	GT:AD:DP:GQ:PL	0/1:37,35:72:99:1088,0,927
chr2	62052774	.	CTT	C	246.73	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.00;DP=154;ExcessHet=6.2839;FS=3.393;MLEAC=2;MLEAF=0.111;MQ=64.64;MQRankSum=0.722;QD=4.41;ReadPosRankSum=0.928;SOR=0.824;set=variant2	GT:AD:DP:GQ:PL	0/1:14,3:24:87:87,0,437
chr2	62053279	.	T	G	3221.60	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=4.37;ClippingRankSum=0.00;DP=466;ExcessHet=3.2736;FS=1.075;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=15.56;ReadPosRankSum=0.670;SOR=0.634;set=variant	GT:AD:DP:GQ:PL	0/1:50,59:109:99:1784,0,1865
chr2	62053290	.	A	G	12890.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=3.14;ClippingRankSum=0.00;DP=752;ExcessHet=3.9991;FS=0.546;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.65;ReadPosRankSum=0.054;SOR=0.648;set=variant	GT:AD:DP:GQ:PL	0/1:59,43:102:99:1217,0,2338
chr2	62053341	.	TA	T	2760.58	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.00;DP=570;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.80;ReadPosRankSum=1.08;SOR=0.730;set=variant2	GT:AD:DP:GQ:PL	0/1:58,69:127:99:1685,0,1468
chr2	62065759	.	C	T	9153.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-2.573e+00;ClippingRankSum=0.00;DP=819;ExcessHet=2.5097;FS=1.854;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.86;ReadPosRankSum=0.649;SOR=0.895;set=variant	GT:AD:DP:GQ:PL	0/1:66,79:145:99:1904,0,1729
chr2	62066927	.	A	G	28669.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.80;ClippingRankSum=0.00;DP=996;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.05;ReadPosRankSum=1.10;SOR=0.772;set=variant	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4641,427,0
chr2	62067433	.	T	C	2405.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=4.69;ClippingRankSum=0.00;DP=461;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=14.85;ReadPosRankSum=-2.660e-01;SOR=0.637;set=variant	GT:AD:DP:GQ:PL	0/1:46,45:91:99:1410,0,1306
chr2	62081012	.	A	C	31315.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.99;ClippingRankSum=0.00;DP=1074;ExcessHet=3.0103;FS=1.428;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.46;ReadPosRankSum=-3.060e-01;SOR=0.547;set=variant	GT:AD:DP:GQ:PL	1/1:0,182:182:99:5760,546,0
chr2	62081217	.	A	G	12645.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=3.22;ClippingRankSum=0.00;DP=379;ExcessHet=3.0103;FS=3.413;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=33.72;ReadPosRankSum=-1.031e+00;SOR=1.166;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2050,162,0
chr2	65296798	.	G	A	4619.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.00;DP=630;ExcessHet=3.8535;FS=1.718;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=12.48;ReadPosRankSum=0.600;SOR=0.597;set=variant	GT:AD:DP:GQ:PL	0/1:72,83:155:99:2077,0,1715
chr2	65298839	.	A	G	5791.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.36;ClippingRankSum=0.00;DP=756;ExcessHet=4.8226;FS=2.543;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=11.75;ReadPosRankSum=-4.580e-01;SOR=0.909;set=variant	GT:AD:DP:GQ:PL	0/1:95,86:181:99:2361,0,2600
chr2	69093312	.	A	G	674.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=2.14;ClippingRankSum=0.00;DP=244;ExcessHet=3.0103;FS=7.257;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=16.87;ReadPosRankSum=-1.030e+00;SOR=0.138;set=variant	GT:AD:DP:GQ:PL	0/1:16,24:40:99:709,0,397
chr2	69553375	.	GA	G	1683.16	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-3.780e-01;ClippingRankSum=0.00;DP=241;ExcessHet=13.3984;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.05;MQRankSum=0.00;QD=11.22;ReadPosRankSum=0.326;SOR=0.743;set=variant2	GT:AD:DP:GQ:PL	0/1:11,16:35:99:360,0,142
chr2	69573029	.	T	C	2892.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.11;ClippingRankSum=0.00;DP=271;ExcessHet=3.9991;FS=3.873;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=17.12;ReadPosRankSum=-3.560e-01;SOR=0.447;set=variant	GT:AD:DP:GQ:PL	0/1:16,19:35:99:477,0,383
chr2	70188676	.	T	C	19181.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=1.78;ClippingRankSum=0.00;DP=810;ExcessHet=3.2736;FS=0.766;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.78;ReadPosRankSum=8.000e-03;SOR=0.564;set=variant	GT:AD:DP:GQ:PL	0/1:76,69:145:99:1592,0,1854
chr2	71004492	.	T	C	2255.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;ClippingRankSum=0.00;DP=187;ExcessHet=11.6816;FS=6.962;MLEAC=10;MLEAF=0.556;MQ=60.06;MQRankSum=0.00;QD=12.74;ReadPosRankSum=0.164;SOR=1.204;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:10,3:13:96:0|1:71004492_T_C:96,0,577
chr2	71004494	.	A	T	2255.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;ClippingRankSum=0.00;DP=191;ExcessHet=11.6816;FS=5.742;MLEAC=10;MLEAF=0.556;MQ=60.06;MQRankSum=0.00;QD=12.53;ReadPosRankSum=-2.600e-01;SOR=1.148;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:10,3:13:96:0|1:71004492_T_C:96,0,577
chr2	71012604	.	G	A	7404.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.00;DP=385;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=20.01;ReadPosRankSum=0.461;SOR=0.674;set=variant	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1665,177,0
chr2	71012734	.	C	G	8624.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.00;DP=379;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=23.37;ReadPosRankSum=-1.500e-01;SOR=0.731;set=variant	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1434,138,0
chr2	71058184	.	C	T	53.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=1.96;ClippingRankSum=0.00;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.98;ReadPosRankSum=-1.960e+00;SOR=0.693;set=variant	GT:AD:DP:GQ:PL	0/1:3,3:6:57:88,0,57
chr2	71058226	.	C	T	2645.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.00;DP=323;ExcessHet=0.9154;FS=3.526;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.03;ReadPosRankSum=0.949;SOR=0.769;set=variant	GT:AD:DP:GQ:PL	0/1:21,5:26:56:56,0,532
chr2	71058270	.	C	G	96.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.280e-01;ClippingRankSum=0.00;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=3.46;ReadPosRankSum=0.698;SOR=0.839;set=variant	GT:AD:DP:GQ:PL	0/1:21,7:28:99:131,0,575
chr2	71060936	.	G	C	514.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-5.500e-02;ClippingRankSum=0.00;DP=332;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.51;ReadPosRankSum=0.00;SOR=0.721;set=variant	GT:AD:DP:GQ:PL	0/1:27,22:49:99:549,0,716
chr2	71061108	.	G	A	497.79	PASS	AC=1;AF=0.313;AN=2;BaseQRankSum=-2.548e+00;ClippingRankSum=0.00;DP=48;ExcessHet=0.3904;FS=0.000;MLEAC=6;MLEAF=0.375;MQ=57.33;MQRankSum=0.00;QD=23.70;ReadPosRankSum=0.976;SOR=2.200;set=variant	GT:AD:DP:GQ:PL	0/1:5,6:11:99:186,0,161
chr2	71062648	.	G	A	4834.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.744e+00;ClippingRankSum=0.00;DP=514;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.27;ReadPosRankSum=0.167;SOR=0.688;set=variant	GT:AD:DP:GQ:PL	0/1:57,35:92:99:781,0,1476
chr2	71062833	.	G	GC	16973.41	PASS	AC=2;AF=1.00;AN=2;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.32;SOR=0.986;set=variant2	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2728,220,0
chr2	71163086	.	T	C	1441.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.00;DP=174;ExcessHet=0.8432;FS=3.734;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=19.48;ReadPosRankSum=-5.410e-01;SOR=1.103;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:952,96,0
chr2	71190384	.	C	T	3384.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-1.050e-01;ClippingRankSum=0.00;DP=195;ExcessHet=1.5127;FS=2.645;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=21.02;ReadPosRankSum=-1.340e-01;SOR=0.471;set=variant	GT:AD:DP:GQ:PL	1/1:0,29:29:87:784,87,0
chr2	71743376	.	T	C	1076.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.46;ClippingRankSum=0.00;DP=471;ExcessHet=3.2736;FS=0.698;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.97;ReadPosRankSum=2.64;SOR=0.804;set=variant	GT:AD:DP:GQ:PL	0/1:44,32:76:99:666,0,992
chr2	71780215	.	T	C	5803.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.00;DP=444;ExcessHet=1.8603;FS=0.836;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.77;ReadPosRankSum=0.927;SOR=0.631;set=variant	GT:AD:DP:GQ:PL	1/1:0,73:73:99:1935,219,0
chr2	71795152	.	A	T	3233.06	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=1.77;ClippingRankSum=0.00;DP=256;ExcessHet=0.2709;FS=1.737;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=22.93;ReadPosRankSum=1.11;SOR=0.980;set=variant	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1495,138,0
chr2	71795460	.	G	A	309.95	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.038e+00;ClippingRankSum=0.00;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.92;ReadPosRankSum=1.25;SOR=1.270;set=variant	GT:AD:DP:GQ:PL	0/1:15,11:26:99:344,0,477
chr2	71838443	.	C	T	931.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-7.160e-01;ClippingRankSum=0.00;DP=364;ExcessHet=3.2736;FS=0.724;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.47;ReadPosRankSum=0.366;SOR=0.655;set=variant	GT:AD:DP:GQ:PL	0/1:39,28:67:99:650,0,1091
chr2	71838657	.	C	T	1810.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-5.660e-01;ClippingRankSum=0.00;DP=596;ExcessHet=3.2736;FS=0.489;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=7.61;ReadPosRankSum=1.88;SOR=0.641;set=variant	GT:AD:DP:GQ:PL	0/1:93,57:150:99:1243,0,2414
chr2	71871188	.	C	T	524.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.400e-01;ClippingRankSum=0.00;DP=268;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=0.159;SOR=1.011;set=variant	GT:AD:DP:GQ:PL	0/1:23,20:43:99:559,0,621
chr2	72359518	.	A	G	7459.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=4.30;ClippingRankSum=0.00;DP=620;ExcessHet=2.5097;FS=0.587;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.97;ReadPosRankSum=-3.700e-01;SOR=0.771;set=variant	GT:AD:DP:GQ:PL	0/1:66,61:127:99:1843,0,1749
chr2	72361960	.	A	G	2333.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-5.860e-01;ClippingRankSum=0.00;DP=366;ExcessHet=1.5127;FS=0.558;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.11;ReadPosRankSum=1.11;SOR=0.747;set=variant	GT:AD:DP:GQ:PL	0/1:38,26:64:99:601,0,926
chr2	73339708	.	G	A	18343.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-1.865e+00;ClippingRankSum=0.00;DP=1066;ExcessHet=6.2839;FS=1.892;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=17.50;ReadPosRankSum=0.935;SOR=0.539;set=variant	GT:AD:DP:GQ:PL	0/1:94,59:153:99:1249,0,2567
chr2	73613031	.	TGGAGGA	TGGAGGAGGA,TGGAGGAGGAGGA,TGGA,T,TGGAGGAGGAGGAGGAGGAGGA	5954.41	PASS	AC=1,1,0,0,0;AF=0.278,0.222,0.222,0.167,0.056;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.00;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=5,4,4,3,1;MLEAF=0.278,0.222,0.222,0.167,0.056;MQ=60.04;MQRankSum=0.00;QD=28.18;ReadPosRankSum=1.09;SOR=1.015;set=variant2	GT:AD:DP:GQ:PL	1/2:2,0,9,0,9,0:20:99:645,632,732,277,346,303,632,732,346,732,257,375,0,375,381,632,732,346,732,375,732
chr2	73675227	.	T	TCTC	18558.59	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=1.44;ClippingRankSum=0.00;DP=535;ExcessHet=4.8226;FS=5.614;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=34.69;ReadPosRankSum=1.55;SOR=1.150;set=variant2	GT:AD:DP:GQ:PL	1/1:0,79:79:99:3699,249,0
chr2	73675669	.	T	G	25728.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=2.43;ClippingRankSum=0.00;DP=918;ExcessHet=3.0103;FS=1.119;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.24;ReadPosRankSum=-6.100e-01;SOR=0.901;set=variant	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5295,478,0
chr2	73675844	.	C	T	16424.65	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.00;DP=1271;ExcessHet=9.7754;FS=1.102;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=13.43;ReadPosRankSum=0.573;SOR=0.808;set=variant	GT:AD:DP:GQ:PL	1/1:0,212:212:99:6666,637,0
chr2	73828538	.	G	A	1239.85	PASS	AC=2;AF=0.688;AN=2;BaseQRankSum=-1.579e+00;ClippingRankSum=0.00;DP=51;ExcessHet=4.1497;FS=6.307;MLEAC=12;MLEAF=0.750;MQ=60.00;MQRankSum=0.00;QD=26.38;ReadPosRankSum=1.28;SOR=3.834;set=variant	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
chr2	85360828	.	GGGC	G	2136.48	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.32;ClippingRankSum=0.00;DP=128;ExcessHet=11.4027;FS=6.056;MLEAC=7;MLEAF=0.389;MQ=59.83;MQRankSum=0.00;QD=19.97;ReadPosRankSum=0.251;SOR=1.936;set=variant2	GT:AD:DP:GQ:PL	0/1:8,10:18:99:396,0,308
chr2	85780536	.	C	T	3850.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.00;DP=469;ExcessHet=8.3924;FS=7.687;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=10.44;ReadPosRankSum=-6.620e-01;SOR=1.027;set=variant	GT:AD:DP:GQ:PL	0/1:36,39:75:99:931,0,894
chr2	85781318	.	T	G	8501.45	PASS	AC=2;AF=1.00;AN=2;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.62;SOR=0.907;set=variant	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1487,159,0
chr2	85893741	.	G	A	6568.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.00;DP=447;ExcessHet=3.4788;FS=0.885;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=18.00;ReadPosRankSum=-2.190e-01;SOR=0.777;set=variant	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2234,234,0
chr2	86371883	.	T	C	8582.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.71;ClippingRankSum=0.00;DP=812;ExcessHet=2.5097;FS=1.115;MLEAC=6;MLEAF=0.333;MQ=59.98;MQRankSum=0.00;QD=13.58;ReadPosRankSum=-1.100e-02;SOR=0.773;set=variant	GT:AD:DP:GQ:PL	0/1:128,77:205:99:1756,0,3385
chr2	86378518	.	C	T	2881.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-9.670e-01;ClippingRankSum=0.00;DP=592;ExcessHet=3.2736;FS=4.912;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.04;ReadPosRankSum=1.42;SOR=0.619;set=variant	GT:AD:DP:GQ:PL	0/1:82,84:166:99:1906,0,1939
chr2	86400824	.	G	A	3085.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.697e+00;ClippingRankSum=0.00;DP=228;ExcessHet=3.9991;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=59.89;MQRankSum=0.00;QD=15.20;ReadPosRankSum=-7.130e-01;SOR=0.664;set=variant	GT:AD:DP:GQ:PL	0/1:15,14:29:99:339,0,427
chr2	86481835	.	C	T	5027.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-6.670e-01;ClippingRankSum=0.00;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.05;ReadPosRankSum=2.88;SOR=0.739;set=variant	GT:AD:DP:GQ:PL	1/1:0,22:22:66:719,66,0
chr2	87012399	.	TA	T,TAA,TAAA	6102.06	PASS	AC=1,0,0;AF=0.056,0.111,0.278;AN=2;BaseQRankSum=-9.670e-01;ClippingRankSum=0.00;DP=858;ExcessHet=6.2536;FS=0.524;MLEAC=1,2,5;MLEAF=0.056,0.111,0.278;MQ=60.11;MQRankSum=0.00;QD=10.52;ReadPosRankSum=0.761;SOR=0.730;set=variant2	GT:AD:DP:GQ:PL	0/1:98,24,7,0:129:99:224,0,2489,414,2113,2751,580,2442,2766,3021
chr2	87017683	.	G	A	589.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.622e+00;ClippingRankSum=0.00;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=19.66;ReadPosRankSum=-4.190e-01;SOR=0.602;set=variant	GT:AD:DP:GQ:PL	0/1:9,21:30:99:624,0,237
chr2	88874891	.	C	A	16261.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-3.030e-01;ClippingRankSum=0.00;DP=955;ExcessHet=1.8603;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=18.63;ReadPosRankSum=1.09;SOR=0.679;set=variant	GT:AD:DP:GQ:PL	1/1:0,170:170:99:4991,510,0
chr2	88879131	.	T	C	2577.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.050e-01;ClippingRankSum=0.00;DP=321;ExcessHet=0.9154;FS=2.643;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.48;ReadPosRankSum=0.539;SOR=0.526;set=variant	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1242,123,0
chr2	88895123	.	T	C	9065.08	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.00;DP=652;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=18.24;ReadPosRankSum=-7.520e-01;SOR=0.662;set=variant	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3478,318,0
chr2	88926729	.	CCAGCAG	C,CCAG	26101.86	PASS	AC=1,1;AF=0.222,0.722;AN=2;BaseQRankSum=1.68;ClippingRankSum=0.00;DP=826;ExcessHet=3.0103;FS=2.846;MLEAC=4,13;MLEAF=0.222,0.722;MQ=59.99;MQRankSum=0.00;QD=29.65;ReadPosRankSum=-4.110e-01;SOR=1.208;set=variant2	GT:AD:DP:GQ:PL	1/2:0,13,102:115:99:4814,4181,4271,512,0,198
chr2	89246822	.	A	G	854.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=1.25;ClippingRankSum=0.00;DP=311;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.056;MQ=59.03;MQRankSum=-2.290e+00;QD=12.57;ReadPosRankSum=-1.577e+00;SOR=0.990;set=variant	GT:AD:DP:GQ:PL	0/1:34,34:68:99:889,0,838
chr2	89246836	.	G	C	1154.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-9.370e-01;ClippingRankSum=0.00;DP=357;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.056;MQ=58.66;MQRankSum=-2.359e+00;QD=13.12;ReadPosRankSum=-1.710e+00;SOR=0.831;set=variant	GT:AD:DP:GQ:PL	0/1:42,46:88:99:1189,0,1115
chr2	89246951	.	C	T	4361.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-3.140e-01;ClippingRankSum=0.00;DP=427;ExcessHet=2.5097;FS=7.161;MLEAC=6;MLEAF=0.333;MQ=59.96;MQRankSum=0.00;QD=14.69;ReadPosRankSum=0.893;SOR=1.078;set=variant	GT:AD:DP:GQ:PL	0/1:44,55:99:99:1324,0,1055
chr2	89247474	.	C	T	762.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.936e+00;ClippingRankSum=0.00;DP=271;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.056;MQ=56.47;MQRankSum=-7.200e-02;QD=12.72;ReadPosRankSum=-7.570e-01;SOR=0.301;set=variant	GT:AD:DP:GQ:PL	0/1:26,34:60:99:797,0,634
chr2	96780716	.	T	G	21635.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-1.023e+00;ClippingRankSum=0.00;DP=1196;ExcessHet=1.8603;FS=0.594;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=19.70;ReadPosRankSum=0.668;SOR=0.600;set=variant	GT:AD:DP:GQ:PL	1/1:1,203:204:99:6175,577,0
chr2	96780986	.	C	CTCCTCCTCT	4596.04	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.07;ClippingRankSum=0.00;DP=202;ExcessHet=1.8603;FS=4.593;MLEAC=10;MLEAF=0.556;MQ=59.95;MQRankSum=0.00;QD=32.60;ReadPosRankSum=0.607;SOR=1.310;set=variant2	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1655,113,0
chr2	96781257	.	C	G	1619.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-1.515e+00;ClippingRankSum=0.00;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=12.56;ReadPosRankSum=1.13;SOR=0.712;set=variant	GT:AD:DP:GQ:PL	0/1:59,70:129:99:1654,0,1431
chr2	96781853	.	T	C	7577.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-5.610e-01;ClippingRankSum=0.00;DP=709;ExcessHet=2.5097;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.60;ReadPosRankSum=1.17;SOR=0.703;set=variant	GT:AD:DP:GQ:PL	0/1:72,61:133:99:1451,0,1725
chr2	96944553	.	G	A	1135.14	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-1.645e+00;ClippingRankSum=0.00;DP=79;ExcessHet=1.8603;FS=2.017;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.94;ReadPosRankSum=0.358;SOR=0.984;set=variant	GT:AD:DP:GQ:PL	0/1:19,3:22:47:47,0,666
chr2	98986510	.	T	C	304.01	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.97;ClippingRankSum=0.00;DP=158;ExcessHet=3.7566;FS=1.720;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=10.86;ReadPosRankSum=0.875;SOR=1.095;set=variant	GT:AD:DP:GQ:PL	0/1:7,4:11:99:133,0,151
chr2	99012373	.	C	T	86.04	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.323e+00;ClippingRankSum=0.00;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=4.78;ReadPosRankSum=0.597;SOR=0.169;set=variant	GT:AD:DP:GQ:PL	0/1:13,5:18:99:120,0,466
chr2	99149946	.	G	A	3194.89	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-1.310e-01;ClippingRankSum=0.00;DP=421;ExcessHet=2.5097;FS=0.953;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.19;ReadPosRankSum=1.20;SOR=0.789;set=variant	GT:AD:DP:GQ:PL	0/1:41,23:64:99:428,0,970
chr2	99172244	.	A	G	3611.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=2.60;ClippingRankSum=0.00;DP=474;ExcessHet=1.5127;FS=18.374;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.94;ReadPosRankSum=0.124;SOR=1.513;set=variant	GT:AD:DP:GQ:PL	0/1:47,30:77:99:838,0,1171
chr2	99193496	.	C	T	7698.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-2.680e-01;ClippingRankSum=0.00;DP=830;ExcessHet=1.5127;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.20;ReadPosRankSum=1.07;SOR=0.695;set=variant	GT:AD:DP:GQ:PL	0/1:98,91:189:99:2116,0,2274
chr2	100218080	.	G	A	9804.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-6.040e-01;ClippingRankSum=0.00;DP=800;ExcessHet=3.9991;FS=0.550;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.05;ReadPosRankSum=0.613;SOR=0.788;set=variant	GT:AD:DP:GQ:PL	1/1:1,134:135:99:4121,368,0
chr2	100343557	.	C	T	7306.45	PASS	AC=2;AF=1.00;AN=2;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.21;SOR=0.765;set=variant	GT:AD:DP:GQ:PL	1/1:0,30:30:90:873,90,0
chr2	101584895	.	C	T	2789.94	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.00;DP=170;ExcessHet=5.1594;FS=0.673;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=18.23;ReadPosRankSum=-5.920e-01;SOR=0.624;set=variant	GT:AD:DP:GQ:PL	1/1:0,27:27:81:790,81,0
chr2	101591304	.	A	G	12402.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.14;ClippingRankSum=0.00;DP=578;ExcessHet=3.8535;FS=2.281;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.76;ReadPosRankSum=0.021;SOR=0.868;set=variant	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3108,306,0
chr2	102984279	.	T	C	1926.62	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=1.33;ClippingRankSum=0.00;DP=284;ExcessHet=0.8432;FS=4.171;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=19.66;ReadPosRankSum=1.05;SOR=0.362;set=variant	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1123,99,0
chr2	103001402	.	C	T	1980.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=2.96;ClippingRankSum=0.00;DP=377;ExcessHet=0.8432;FS=0.612;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.62;ReadPosRankSum=2.51;SOR=0.763;set=variant	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1339,147,0
chr2	105885961	.	T	C	19224.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-1.408e+00;ClippingRankSum=0.00;DP=990;ExcessHet=6.2839;FS=0.576;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=19.82;ReadPosRankSum=0.447;SOR=0.764;set=variant	GT:AD:DP:GQ:PL	0/1:93,72:165:99:1689,0,2462
chr2	105889349	.	G	A	15745.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.606e+00;ClippingRankSum=0.00;DP=1294;ExcessHet=3.9991;FS=0.534;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.01;ReadPosRankSum=0.337;SOR=0.621;set=variant	GT:AD:DP:GQ:PL	0/1:116,109:225:99:2458,0,2830
chr2	105915128	.	G	A	343.39	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.640e-01;ClippingRankSum=0.00;DP=88;ExcessHet=3.9794;FS=1.222;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.58;ReadPosRankSum=1.41;SOR=0.960;set=variant	GT:AD:DP:GQ:PL	0/1:15,6:21:99:102,0,400
chr2	105924510	.	A	G	11064.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.00;DP=784;ExcessHet=6.2536;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.37;ReadPosRankSum=0.951;SOR=0.679;set=variant	GT:AD:DP:GQ:PL	0/1:76,80:156:99:2051,0,1858
chr2	109389463	.	G	A	24152.45	PASS	AC=2;AF=1.00;AN=2;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.49;SOR=0.902;set=variant	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3770,343,0
chr2	109513601	.	A	G	8264.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.00;DP=333;ExcessHet=0.8432;FS=6.356;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=27.19;ReadPosRankSum=-1.189e+00;SOR=0.306;set=variant	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1595,144,0
chr2	109513654	.	G	A	3857.46	PASS	AC=2;AF=1.00;AN=2;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.54;SOR=9.507;set=variant	GT:AD:DP:GQ:PL	1/1:0,18:18:54:607,54,0
chr2	109526969	.	G	A	14785.45	PASS	AC=2;AF=1.00;AN=2;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.60;SOR=0.910;set=variant	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2425,243,0
chr2	110962532	.	C	A	1576.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-5.700e-01;ClippingRankSum=0.00;DP=400;ExcessHet=3.2736;FS=2.109;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.03;ReadPosRankSum=1.92;SOR=0.510;set=variant	GT:AD:DP:GQ:PL	0/1:32,48:80:99:1081,0,735
chr2	111907691	.	T	C	5987.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-7.820e-01;ClippingRankSum=0.00;DP=518;ExcessHet=1.8603;FS=1.729;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=15.80;ReadPosRankSum=2.31;SOR=0.591;set=variant	GT:AD:DP:GQ:PL	0/1:33,37:70:99:860,0,791
chr2	112536264	.	G	T	2638.47	my_filter	AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=14;MLEAF=1.00;MQ=32.11;QD=33.83;SOR=7.328;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,12:12:36:417,36,0
chr2	112605302	.	C	T	1103.14	my_filter	AC=2;AF=0.611;AN=2;BaseQRankSum=-2.189e+00;ClippingRankSum=0.00;DP=65;ExcessHet=0.1703;FS=5.366;MLEAC=12;MLEAF=0.667;MQ=37.13;MQRankSum=-2.189e+00;QD=29.03;ReadPosRankSum=-5.660e-01;SOR=1.000;set=FilteredInAll	GT:AD:DP:GQ:PL	1/1:0,6:6:18:222,18,0
chr2	112608423	.	C	T	1861.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-2.516e+00;ClippingRankSum=0.00;DP=857;ExcessHet=11.4027;FS=16.808;MLEAC=7;MLEAF=0.389;MQ=47.21;MQRankSum=-4.546e+00;QD=2.43;ReadPosRankSum=1.05;SOR=1.337;set=variant	GT:AD:DP:GQ:PL	0/1:124,37:161:99:551,0,3314
chr2	112614429	.	G	A	1589.86	my_filter	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037e+00;ClippingRankSum=0.00;DP=908;ExcessHet=22.7857;FS=8.407;MLEAC=9;MLEAF=0.500;MQ=52.88;MQRankSum=-3.454e+00;QD=1.76;ReadPosRankSum=0.720;SOR=0.311;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:113,30:143:99:325,0,3203
chr2	112619981	.	G	A	477.51	my_filter	AC=1;AF=0.444;AN=2;BaseQRankSum=3.21;ClippingRankSum=0.00;DP=382;ExcessHet=15.7960;FS=49.849;MLEAC=8;MLEAF=0.444;MQ=49.25;MQRankSum=-3.480e+00;QD=1.36;ReadPosRankSum=0.147;SOR=5.491;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:60,7:67:21:21,0,1666
chr2	112751928	.	G	A	7808.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-4.450e-01;ClippingRankSum=0.00;DP=373;ExcessHet=3.8535;FS=0.966;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.16;ReadPosRankSum=-2.530e-01;SOR=0.788;set=variant	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1428,147,0
chr2	112755001	.	A	G	7657.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-5.190e-01;ClippingRankSum=0.00;DP=379;ExcessHet=3.8535;FS=0.913;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=20.42;ReadPosRankSum=-5.990e-01;SOR=0.618;set=variant	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1777,189,0
chr2	112765973	.	A	G	5322.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.00;DP=283;ExcessHet=3.8535;FS=1.587;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=18.94;ReadPosRankSum=-3.450e-01;SOR=0.579;set=variant	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1137,111,0
chr2	112776979	.	C	A	1877.98	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.00;DP=107;ExcessHet=4.8226;FS=1.742;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=18.41;ReadPosRankSum=1.37;SOR=0.527;set=variant	GT:AD:DP:GQ:PL	1/1:0,17:17:51:510,51,0
chr2	113877713	.	A	C	4427.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.00;DP=496;ExcessHet=2.5097;FS=0.885;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.66;ReadPosRankSum=-7.820e-01;SOR=0.621;set=variant	GT:AD:DP:GQ:PL	0/1:43,39:82:99:867,0,1045
chr2	113887207	.	T	C	3609.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=531;ExcessHet=2.5097;FS=0.408;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.46;ReadPosRankSum=1.78;SOR=0.732;set=variant	GT:AD:DP:GQ:PL	0/1:46,21:67:99:450,0,1128
chr2	113890304	.	T	C	5882.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.53;ClippingRankSum=0.00;DP=546;ExcessHet=0.9154;FS=0.790;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.32;ReadPosRankSum=0.132;SOR=0.755;set=variant	GT:AD:DP:GQ:PL	0/1:57,60:117:99:1389,0,1322
chr2	116497479	.	A	G	10044.45	PASS	AC=2;AF=1.00;AN=2;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=34.05;SOR=2.376;set=variant	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1905,168,0
chr2	116510817	.	G	C	13560.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.00;DP=565;ExcessHet=3.2736;FS=0.705;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.26;ReadPosRankSum=2.32;SOR=0.554;set=variant	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3052,285,0
chr2	116525960	.	G	A	23611.45	PASS	AC=2;AF=1.00;AN=2;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.35;SOR=0.839;set=variant	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4075,411,0
chr2	116599927	.	T	C	7533.45	PASS	AC=2;AF=1.00;AN=2;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=26.91;SOR=0.878;set=variant	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1205,126,0
chr2	120125029	.	A	G	4445.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=1.95;ClippingRankSum=0.00;DP=171;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=26.15;ReadPosRankSum=0.311;SOR=0.711;set=variant	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1193,99,0
chr2	120125053	.	C	G	897.63	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.50;ClippingRankSum=0.00;DP=152;ExcessHet=3.2736;FS=14.507;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=20.40;ReadPosRankSum=0.737;SOR=0.693;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,17:31:99:0|1:120125053_C_G:662,0,537
chr2	120125058	.	C	T	899.63	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-1.277e+00;ClippingRankSum=0.00;DP=146;ExcessHet=3.2736;FS=11.642;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=20.45;ReadPosRankSum=0.474;SOR=0.407;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:14,16:30:99:0|1:120125053_C_G:630,0,540
chr2	121726447	.	G	A	13315.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.00;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.42;ReadPosRankSum=0.226;SOR=0.695;set=variant	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2144,216,0
chr2	121746956	.	G	T	13659.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.00;DP=1003;ExcessHet=6.2536;FS=0.530;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=14.52;ReadPosRankSum=0.558;SOR=0.754;set=variant	GT:AD:DP:GQ:PL	0/1:97,75:172:99:1842,0,2473
chr2	121747406	.	G	A	3507.34	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-1.402e+00;ClippingRankSum=0.00;DP=219;ExcessHet=6.2536;FS=1.845;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=17.80;ReadPosRankSum=-5.530e-01;SOR=0.569;set=variant	GT:AD:DP:GQ:PL	0/1:16,26:42:99:722,0,416
chr2	121747429	.	A	G	3919.16	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.47;ClippingRankSum=0.00;DP=264;ExcessHet=6.2536;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.75;ReadPosRankSum=0.342;SOR=0.692;set=variant	GT:AD:DP:GQ:PL	0/1:21,26:47:99:751,0,485
chr2	125192068	.	T	C	10345.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=1.59;ClippingRankSum=0.00;DP=563;ExcessHet=2.5097;FS=1.256;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.25;ReadPosRankSum=1.37;SOR=0.680;set=variant	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2700,273,0
chr2	128180872	.	G	T	10808.45	PASS	AC=2;AF=1.00;AN=2;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.78;SOR=1.260;set=variant	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1561,147,0
chr2	128321770	.	G	A	12168.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.00;DP=669;ExcessHet=4.8226;FS=0.585;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=18.55;ReadPosRankSum=0.826;SOR=0.758;set=variant	GT:AD:DP:GQ:PL	1/1:0,107:107:99:2964,321,0
chr2	128339456	.	G	T	7280.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-8.680e-01;ClippingRankSum=0.00;DP=336;ExcessHet=4.8226;FS=1.852;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=22.13;ReadPosRankSum=-7.480e-01;SOR=0.546;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1538,162,0
chr2	128345960	.	T	C	1469.08	PASS	AC=2;AF=0.875;AN=2;BaseQRankSum=2.19;ClippingRankSum=0.00;DP=58;ExcessHet=3.3099;FS=2.140;MLEAC=14;MLEAF=0.875;MQ=57.89;MQRankSum=0.00;QD=27.72;ReadPosRankSum=2.19;SOR=1.680;set=variant	GT:AD:DP:GQ:PL	1/1:0,6:6:18:203,18,0
chr2	128387261	.	G	A	2711.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-6.930e-01;ClippingRankSum=0.00;DP=737;ExcessHet=3.2736;FS=1.917;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.80;ReadPosRankSum=2.16;SOR=0.832;set=variant	GT:AD:DP:GQ:PL	0/1:95,92:187:99:2031,0,2365
chr2	135911422	.	T	C	31050.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=1.22;ClippingRankSum=0.00;DP=1359;ExcessHet=0.8432;FS=0.832;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=25.02;ReadPosRankSum=1.53;SOR=0.848;set=variant	GT:AD:DP:GQ:PL	1/1:0,247:247:99:7235,741,0
chr2	136546110	.	A	G	1548.79	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-3.430e-01;ClippingRankSum=0.00;DP=116;ExcessHet=1.4371;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=19.86;ReadPosRankSum=-4.180e-01;SOR=0.717;set=variant	GT:AD:DP:GQ:PL	0/1:11,17:28:99:464,0,309
chr2	136555659	.	T	C	2725.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.00;DP=311;ExcessHet=0.9154;FS=3.695;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.13;ReadPosRankSum=-7.800e-01;SOR=0.540;set=variant	GT:AD:DP:GQ:PL	0/1:29,11:40:99:264,0,672
chr2	136561557	.	G	A	7752.34	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-4.760e-01;ClippingRankSum=0.00;DP=385;ExcessHet=0.4012;FS=2.126;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.21;ReadPosRankSum=-7.040e-01;SOR=0.788;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1263,132,0
chr2	136562472	.	G	A	3049.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-2.400e-02;ClippingRankSum=0.00;DP=420;ExcessHet=1.5127;FS=2.884;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=12.76;ReadPosRankSum=1.32;SOR=0.896;set=variant	GT:AD:DP:GQ:PL	0/1:52,36:88:99:736,0,1306
chr2	136575199	.	G	T	12518.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.45;ClippingRankSum=0.00;DP=759;ExcessHet=0.9154;FS=0.603;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=20.76;ReadPosRankSum=-6.590e-01;SOR=0.610;set=variant	GT:AD:DP:GQ:PL	0/1:68,103:171:99:2774,0,1700
chr2	136575534	.	T	C	19188.45	PASS	AC=2;AF=1.00;AN=2;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.80;SOR=1.441;set=variant	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3182,282,0
chr2	145270592	.	G	A	9252.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.00;DP=854;ExcessHet=3.9991;FS=1.109;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.61;ReadPosRankSum=0.226;SOR=0.806;set=variant	GT:AD:DP:GQ:PL	0/1:92,64:156:99:1446,0,2273
chr2	148701099	.	GAAA	GAA,G	1116.24	PASS	AC=1,0;AF=0.444,0.056;AN=2;BaseQRankSum=1.09;ClippingRankSum=0.00;DP=149;ExcessHet=7.7512;FS=16.211;MLEAC=8,1;MLEAF=0.444,0.056;MQ=60.00;MQRankSum=0.00;QD=13.95;ReadPosRankSum=0.641;SOR=2.488;set=variant2	GT:AD:DP:GQ:PL	0/1:4,11,0:20:35:247,0,35,255,90,374
chr2	148716428	.	T	C	4890.46	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=1.46;ClippingRankSum=0.00;DP=299;ExcessHet=0.9154;FS=1.123;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.55;ReadPosRankSum=-3.230e-01;SOR=0.794;set=variant	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1545,147,0
chr2	150432976	.	C	T	5137.60	PASS	AC=2;AF=0.889;AN=2;DP=227;ExcessHet=0.1296;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;QD=27.04;SOR=0.803;set=variant	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1060,111,0
chr2	152352843	.	C	G	6998.62	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-3.120e-01;ClippingRankSum=0.00;DP=275;ExcessHet=0.8432;FS=0.780;MLEAC=14;MLEAF=0.778;MQ=59.79;MQRankSum=0.00;QD=27.88;ReadPosRankSum=0.433;SOR=0.838;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1241,108,0
chr2	152387553	.	T	C	4714.13	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-8.560e-01;ClippingRankSum=0.00;DP=214;ExcessHet=0.1296;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=26.34;ReadPosRankSum=-3.960e-01;SOR=0.589;set=variant	GT:AD:DP:GQ:PL	1/1:0,24:24:72:718,72,0
chr2	152388415	.	AT	A	5043.55	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-2.680e-01;ClippingRankSum=0.00;DP=203;ExcessHet=0.1296;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=32.96;ReadPosRankSum=-9.110e-01;SOR=0.671;set=variant2	GT:AD:DP:GQ:PL	1/1:0,26:26:78:955,78,0
chr2	152402515	.	T	TA,TAA	1160.72	PASS	AC=1,1;AF=0.313,0.250;AN=2;BaseQRankSum=1.03;ClippingRankSum=0.00;DP=115;ExcessHet=3.0103;FS=1.438;MLEAC=6,5;MLEAF=0.375,0.313;MQ=55.19;MQRankSum=0.00;QD=16.82;ReadPosRankSum=-3.110e-01;SOR=1.253;set=variant2	GT:AD:DP:GQ:PL	1/2:3,8,7:18:58:294,58,71,98,0,144
chr2	152422076	.	C	G	13125.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.44;ClippingRankSum=0.00;DP=507;ExcessHet=3.2736;FS=0.737;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.52;ReadPosRankSum=-2.470e-01;SOR=0.605;set=variant	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2571,243,0
chr2	152422087	.	A	G	7814.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=2.19;ClippingRankSum=0.00;DP=458;ExcessHet=1.8603;FS=0.428;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.59;ReadPosRankSum=0.479;SOR=0.667;set=variant	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2517,240,0
chr2	152424933	.	T	TA	4195.53	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.00;DP=355;ExcessHet=15.7960;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=60.94;MQRankSum=0.00;QD=17.12;ReadPosRankSum=-6.200e-01;SOR=0.683;set=variant2	GT:AD:DP:GQ:PL	0/1:8,29:47:75:929,0,75
chr2	152436012	.	T	G	888.61	my_filter	AC=1;AF=0.438;AN=2;BaseQRankSum=-6.670e-01;ClippingRankSum=0.00;DP=89;ExcessHet=1.7156;FS=3.611;MLEAC=8;MLEAF=0.500;MQ=32.08;MQRankSum=0.283;QD=13.67;ReadPosRankSum=0.402;SOR=0.312;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:10,9:19:99:192,0,250
chr2	152490219	.	A	G	4019.01	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-3.196e+00;ClippingRankSum=0.00;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=59.21;MQRankSum=0.00;QD=31.16;ReadPosRankSum=-1.063e+00;SOR=1.022;set=variant	GT:AD:DP:GQ:PL	1/1:0,30:30:90:977,90,0
chr2	152490458	.	A	G	3945.47	PASS	AC=2;AF=1.00;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.77;SOR=3.872;set=variant	GT:AD:DP:GQ:PL	1/1:0,18:18:54:692,54,0
chr2	152496526	.	A	G	1554.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.34;ClippingRankSum=0.00;DP=415;ExcessHet=3.8535;FS=1.236;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.09;ReadPosRankSum=0.997;SOR=0.818;set=variant	GT:AD:DP:GQ:PL	0/1:36,33:69:99:844,0,849
chr2	152500449	.	C	G	6631.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970e-01;ClippingRankSum=0.00;DP=518;ExcessHet=3.4788;FS=1.136;MLEAC=9;MLEAF=0.500;MQ=57.94;MQRankSum=-2.960e-01;QD=15.07;ReadPosRankSum=-7.960e-01;SOR=0.780;set=variant	GT:AD:DP:GQ:PL	0/1:50,52:102:99:1246,0,1153
chr2	152511778	.	A	C	727.52	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.35;ClippingRankSum=0.00;DP=176;ExcessHet=3.8535;FS=0.833;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.56;ReadPosRankSum=-6.390e-01;SOR=0.581;set=variant	GT:AD:DP:GQ:PL	0/1:26,16:42:99:364,0,632
chr2	152515683	.	G	A	646.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.00;DP=205;ExcessHet=3.2736;FS=3.464;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.80;ReadPosRankSum=0.913;SOR=1.220;set=variant	GT:AD:DP:GQ:PL	0/1:22,21:43:99:490,0,579
chr2	152521096	.	C	T	396.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-4.490e-01;ClippingRankSum=0.00;DP=273;ExcessHet=3.8535;FS=2.280;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=5.36;ReadPosRankSum=-3.500e-01;SOR=1.096;set=variant	GT:AD:DP:GQ:PL	0/1:26,11:37:99:255,0,741
chr2	152527572	.	C	T	11929.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-2.039e+00;ClippingRankSum=0.00;DP=502;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.10;ReadPosRankSum=1.47;SOR=0.709;set=variant	GT:AD:DP:GQ:PL	0/1:28,51:79:99:1200,0,639
chr2	152527608	.	C	T	1717.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.00;DP=477;ExcessHet=3.8535;FS=1.626;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=7.25;ReadPosRankSum=0.861;SOR=0.579;set=variant	GT:AD:DP:GQ:PL	0/1:71,41:112:99:835,0,1652
chr2	152531077	.	A	G	4430.67	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=-2.220e-01;ClippingRankSum=0.00;DP=164;ExcessHet=3.2736;FS=6.488;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=27.52;ReadPosRankSum=-5.370e-01;SOR=0.273;set=variant	GT:AD:DP:GQ:PL	0/1:3,22:25:27:620,0,27
chr2	152536498	.	T	A	8091.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=1.50;ClippingRankSum=0.00;DP=343;ExcessHet=3.2736;FS=6.626;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.08;ReadPosRankSum=-1.166e+00;SOR=0.363;set=variant	GT:AD:DP:GQ:PL	0/1:25,22:47:99:533,0,569
chr2	152573981	.	A	G	7319.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.00;DP=349;ExcessHet=3.8535;FS=2.742;MLEAC=15;MLEAF=0.833;MQ=60.37;MQRankSum=1.63;QD=21.15;ReadPosRankSum=0.787;SOR=0.548;set=variant	GT:AD:DP:GQ:PL	0/1:38,22:60:99:498,0,978
chr2	152698480	.	C	T	1970.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-4.114e+00;ClippingRankSum=0.00;DP=514;ExcessHet=3.2736;FS=3.846;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=-1.321e+00;SOR=0.524;set=variant	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1124,0,1117
chr2	155711357	.	T	C	3351.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.00;DP=446;ExcessHet=4.8226;FS=2.196;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=13.62;ReadPosRankSum=-3.570e-01;SOR=0.561;set=variant	GT:AD:DP:GQ:PL	0/1:33,38:71:99:1021,0,866
chr2	157370018	.	GT	G	139.94	PASS	AC=1;AF=0.125;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.00;DP=102;ExcessHet=7.0302;FS=0.000;MLEAC=3;MLEAF=0.188;MQ=65.08;MQRankSum=0.00;QD=6.66;ReadPosRankSum=0.325;SOR=0.576;set=variant2	GT:AD:DP:GQ:PL	0/1:8,4:12:46:46,0,168
chr2	157406249	.	G	A	4432.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-8.040e-01;ClippingRankSum=0.00;DP=208;ExcessHet=3.8535;FS=0.725;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.50;ReadPosRankSum=0.271;SOR=0.829;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:959,96,0
chr2	158395079	.	C	G	6901.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.00;DP=283;ExcessHet=3.8535;FS=3.169;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=25.10;ReadPosRankSum=-7.700e-02;SOR=0.461;set=variant	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1420,135,0
chr2	158443889	.	G	A	6535.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.415e+00;ClippingRankSum=0.00;DP=722;ExcessHet=1.5127;FS=1.152;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=12.99;ReadPosRankSum=-6.590e-01;SOR=0.789;set=variant	GT:AD:DP:GQ:PL	0/1:112,67:179:99:1546,0,3317
chr2	158626980	.	C	T	27324.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374e+00;ClippingRankSum=0.00;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=27.80;ReadPosRankSum=-6.610e-01;SOR=0.260;set=variant	GT:AD:DP:GQ:PL	1/1:0,165:165:99:4737,495,0
chr2	158636910	.	G	A	6512.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=-2.350e-01;ClippingRankSum=0.00;DP=309;ExcessHet=3.8535;FS=0.581;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.93;ReadPosRankSum=-7.120e-01;SOR=0.768;set=variant	GT:AD:DP:GQ:PL	0/1:21,16:37:99:351,0,524
chr2	163128725	.	A	G	4066.61	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;ClippingRankSum=0.00;DP=287;ExcessHet=0.7786;FS=3.480;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=23.51;ReadPosRankSum=-3.770e-01;SOR=0.444;set=variant	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1503,135,0
chr2	163128824	.	T	C	20054.60	PASS	AC=2;AF=0.889;AN=2;DP=738;ExcessHet=0.1296;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;QD=29.19;SOR=0.738;set=variant	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4081,405,0
chr2	163137871	.	C	G	6289.61	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=1.04;ClippingRankSum=0.00;DP=448;ExcessHet=0.7786;FS=4.530;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=19.29;ReadPosRankSum=0.373;SOR=0.933;set=variant	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2398,216,0
chr2	163137983	.	T	C	6127.61	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-7.810e-01;ClippingRankSum=0.00;DP=433;ExcessHet=0.7786;FS=2.198;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=19.58;ReadPosRankSum=0.913;SOR=0.551;set=variant	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2360,240,0
chr2	165996107	.	T	A	7420.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-3.950e-01;ClippingRankSum=0.00;DP=353;ExcessHet=0.1296;FS=2.961;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=25.76;ReadPosRankSum=-3.730e-01;SOR=0.448;set=variant	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1544,123,0
chr2	166020893	.	G	A	5927.08	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=-1.778e+00;ClippingRankSum=0.00;DP=465;ExcessHet=1.8603;FS=2.047;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=18.07;ReadPosRankSum=1.00;SOR=0.851;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2189,204,0
chr2	166170127	.	T	C	5767.97	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.00;DP=189;ExcessHet=3.0103;FS=2.543;MLEAC=17;MLEAF=0.944;MQ=59.98;MQRankSum=0.00;QD=31.87;ReadPosRankSum=0.812;SOR=0.293;set=variant	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1472,129,0
chr2	166788336	.	T	C	14525.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;ClippingRankSum=0.00;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=28.20;ReadPosRankSum=2.24;SOR=0.278;set=variant	GT:AD:DP:GQ:PL	1/1:1,83:84:99:2357,218,0
chr2	166797646	.	C	T	10700.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.00;DP=454;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.21;ReadPosRankSum=0.204;SOR=0.738;set=variant	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1865,195,0
chr2	166892788	.	C	T	7712.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-1.507e+00;ClippingRankSum=0.00;DP=359;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.79;ReadPosRankSum=-9.590e-01;SOR=0.699;set=variant	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1776,186,0
chr2	166897864	.	A	G	4624.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.00;DP=214;ExcessHet=3.8535;FS=2.215;MLEAC=15;MLEAF=0.833;MQ=59.92;MQRankSum=0.00;QD=21.92;ReadPosRankSum=0.332;SOR=0.534;set=variant	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1055,111,0
chr2	166903445	.	T	C	8574.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=2.11;ClippingRankSum=0.00;DP=310;ExcessHet=3.8535;FS=2.052;MLEAC=15;MLEAF=0.833;MQ=59.80;MQRankSum=0.00;QD=27.66;ReadPosRankSum=0.397;SOR=0.913;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1723,150,0
chr2	167055393	.	T	C	11681.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.48;ClippingRankSum=0.00;DP=764;ExcessHet=6.2536;FS=1.140;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.41;ReadPosRankSum=0.314;SOR=0.709;set=variant	GT:AD:DP:GQ:PL	0/1:83,46:129:99:1165,0,2141
chr2	167060980	.	GAAAC	G	13877.86	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.02;ClippingRankSum=0.00;DP=367;ExcessHet=3.0103;FS=0.677;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=35.03;ReadPosRankSum=-1.363e+00;SOR=0.629;set=variant2	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2420,166,0
chr2	167099158	.	A	G	5810.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.00;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.03;ReadPosRankSum=-6.900e-01;SOR=0.640;set=variant	GT:AD:DP:GQ:PL	1/1:0,35:35:99:998,105,0
chr2	167129256	.	C	A	4492.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-3.505e+00;ClippingRankSum=0.00;DP=435;ExcessHet=6.2839;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=15.38;ReadPosRankSum=-1.100e-02;SOR=0.663;set=variant	GT:AD:DP:GQ:PL	0/1:33,61:94:99:1681,0,936
chr2	167133540	.	T	G	2069.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.00;DP=269;ExcessHet=6.2839;FS=2.006;MLEAC=5;MLEAF=0.278;MQ=59.34;MQRankSum=-8.010e-01;QD=12.93;ReadPosRankSum=-3.980e-01;SOR=0.537;set=variant	GT:AD:DP:GQ:PL	0/1:15,19:34:99:539,0,337
chr2	167144974	.	A	T	12099.47	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-1.470e-01;ClippingRankSum=0.00;DP=720;ExcessHet=3.9991;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.87;ReadPosRankSum=0.493;SOR=0.753;set=variant	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3491,348,0
chr2	167144995	.	T	C	6926.13	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=2.81;ClippingRankSum=0.00;DP=661;ExcessHet=0.1296;FS=3.163;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=23.01;ReadPosRankSum=0.390;SOR=0.952;set=variant	GT:AD:DP:GQ:PL	0/1:65,64:129:99:1721,0,1609
chr2	167145142	.	A	G	4215.13	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.01;ClippingRankSum=0.00;DP=569;ExcessHet=0.1296;FS=0.576;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=20.46;ReadPosRankSum=3.71;SOR=0.620;set=variant	GT:AD:DP:GQ:PL	0/1:60,44:104:99:1064,0,1501
chr2	167163043	.	T	C	6145.61	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.00;DP=491;ExcessHet=0.7786;FS=2.069;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=19.21;ReadPosRankSum=-6.330e-01;SOR=0.559;set=variant	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2042,207,0
chr2	167168093	.	C	T	2993.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-8.400e-02;ClippingRankSum=0.00;DP=351;ExcessHet=2.5097;FS=2.301;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.13;ReadPosRankSum=0.644;SOR=0.855;set=variant	GT:AD:DP:GQ:PL	0/1:34,23:57:99:481,0,834
chr2	168931610	.	G	A	4239.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-7.910e-01;ClippingRankSum=0.00;DP=445;ExcessHet=8.3924;FS=1.309;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=0.028;SOR=0.622;set=variant	GT:AD:DP:GQ:PL	0/1:24,34:58:99:866,0,694
chr2	169764176	.	G	C	22764.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.00;DP=887;ExcessHet=3.2736;FS=0.848;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.90;ReadPosRankSum=-2.580e-01;SOR=0.593;set=variant	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3279,303,0
chr2	169789016	.	T	C	8774.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.00;DP=424;ExcessHet=0.8432;FS=0.619;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=24.31;ReadPosRankSum=1.26;SOR=0.659;set=variant	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1934,169,0
chr2	169830328	.	A	G	5774.61	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;ClippingRankSum=0.00;DP=405;ExcessHet=0.7786;FS=1.046;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=20.19;ReadPosRankSum=-6.620e-01;SOR=0.595;set=variant	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1784,180,0
chr2	169997051	.	G	A	3850.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-3.790e-01;ClippingRankSum=0.00;DP=230;ExcessHet=0.9154;FS=0.699;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=21.39;ReadPosRankSum=0.287;SOR=0.799;set=variant	GT:AD:DP:GQ:PL	0/1:16,19:35:99:490,0,415
chr2	170003432	.	T	G	5270.78	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.00;DP=248;ExcessHet=0.3904;FS=6.326;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=26.76;ReadPosRankSum=-1.093e+00;SOR=0.276;set=variant	GT:AD:DP:GQ:PL	0/1:15,22:37:99:612,0,416
chr2	170010985	.	T	C	4216.64	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.00;DP=187;ExcessHet=4.8226;FS=0.750;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=23.69;ReadPosRankSum=-1.700e-02;SOR=0.619;set=variant	GT:AD:DP:GQ:PL	0/1:18,17:35:99:442,0,406
chr2	170032989	.	C	T	5587.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.736e+00;ClippingRankSum=0.00;DP=363;ExcessHet=0.9154;FS=1.815;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.39;ReadPosRankSum=-6.440e-01;SOR=0.575;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:19,26:45:99:.:.:618,0,511
chr2	170053505	.	C	T	1253.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.00;DP=335;ExcessHet=3.8535;FS=1.350;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.83;ReadPosRankSum=0.011;SOR=0.573;set=variant	GT:AD:DP:GQ:PL	0/1:25,23:48:99:534,0,589
chr2	170070172	.	C	T	1997.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.172e+00;ClippingRankSum=0.00;DP=332;ExcessHet=3.8535;FS=1.436;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=14.58;ReadPosRankSum=-6.810e-01;SOR=0.842;set=variant	GT:AD:DP:GQ:PL	0/1:26,43:69:99:1123,0,628
chr2	170088351	.	G	A	623.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.45;ClippingRankSum=0.00;DP=243;ExcessHet=4.8226;FS=1.691;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=5.72;ReadPosRankSum=0.726;SOR=0.952;set=variant	GT:AD:DP:GQ:PL	0/1:34,17:51:99:295,0,801
chr2	170099473	.	T	C	11859.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.00;DP=673;ExcessHet=4.8226;FS=1.180;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=17.86;ReadPosRankSum=-1.510e-01;SOR=0.850;set=variant	GT:AD:DP:GQ:PL	0/1:72,45:117:99:1013,0,1825
chr2	170103336	.	T	C	6435.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.00;DP=413;ExcessHet=4.8226;FS=3.314;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=15.74;ReadPosRankSum=0.457;SOR=0.810;set=variant	GT:AD:DP:GQ:PL	0/1:59,25:84:99:454,0,1352
chr2	170103351	.	G	T	4806.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-1.050e-01;ClippingRankSum=0.00;DP=417;ExcessHet=2.5097;FS=0.798;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=13.35;ReadPosRankSum=0.505;SOR=0.748;set=variant	GT:AD:DP:GQ:PL	0/1:52,24:76:99:453,0,1262
chr2	170115588	.	T	C	10257.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=-6.520e-01;ClippingRankSum=0.00;DP=520;ExcessHet=4.8226;FS=0.588;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=20.60;ReadPosRankSum=-3.870e-01;SOR=0.653;set=variant	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1046,0,970
chr2	170150671	.	G	A	4529.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=1.74;ClippingRankSum=0.00;DP=242;ExcessHet=1.5127;FS=2.232;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.09;ReadPosRankSum=0.107;SOR=0.525;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1010,102,0
chr2	170151227	.	TA	T	58.26	PASS	AC=2;AF=0.333;AN=2;DP=10;ExcessHet=0.4576;FS=0.000;MLEAC=3;MLEAF=0.500;MQ=56.12;QD=8.32;SOR=4.174;set=variant2	GT:AD:DP:GQ:PL	1/1:0,7:7:19:98,19,0
chr2	170218847	.	C	G	12808.45	PASS	AC=2;AF=1.00;AN=2;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.32;SOR=1.409;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,72:72:99:.:.:2314,216,0
chr2	170684224	.	C	T	4399.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-2.156e+00;ClippingRankSum=0.00;DP=240;ExcessHet=1.8603;FS=3.354;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.89;ReadPosRankSum=-2.300e-01;SOR=0.458;set=variant	GT:AD:DP:GQ:PL	0/1:26,24:50:99:643,0,767
chr2	170684569	.	G	A	483.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.449e+00;ClippingRankSum=0.00;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.34;ReadPosRankSum=-9.170e-01;SOR=0.591;set=variant	GT:AD:DP:GQ:PL	0/1:37,21:58:99:518,0,1117
chr2	170762566	.	A	T	3822.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.00;DP=400;ExcessHet=2.5097;FS=0.474;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.99;ReadPosRankSum=0.286;SOR=0.645;set=variant	GT:AD:DP:GQ:PL	0/1:27,29:56:99:664,0,566
chr2	170917648	.	A	G	2928.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=2.80;ClippingRankSum=0.00;DP=385;ExcessHet=1.5127;FS=1.821;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=14.57;ReadPosRankSum=0.357;SOR=0.549;set=variant	GT:AD:DP:GQ:PL	0/1:39,29:68:99:777,0,1028
chr2	171850329	.	T	G	3346.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=2.21;ClippingRankSum=0.00;DP=406;ExcessHet=2.5097;FS=5.398;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=14.18;ReadPosRankSum=0.954;SOR=1.048;set=variant	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1645,156,0
chr2	172339964	.	C	T	21401.45	PASS	AC=2;AF=1.00;AN=2;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.93;SOR=0.911;set=variant	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4000,388,0
chr2	172693780	.	G	A	1174.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.566e+00;ClippingRankSum=0.00;DP=300;ExcessHet=3.8535;FS=2.502;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.87;ReadPosRankSum=0.620;SOR=0.486;set=variant	GT:AD:DP:GQ:PL	0/1:24,19:43:99:427,0,649
chr2	172725301	.	A	G	2584.95	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.00;DP=187;ExcessHet=5.1594;FS=2.014;MLEAC=12;MLEAF=0.667;MQ=60.06;MQRankSum=0.00;QD=16.16;ReadPosRankSum=-4.000e-02;SOR=0.527;set=variant	GT:AD:DP:GQ:PL	1/1:0,17:17:51:562,51,0
chr2	173352103	.	C	T	3669.10	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.15;ClippingRankSum=0.00;DP=261;ExcessHet=6.2536;FS=3.178;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.75;ReadPosRankSum=-5.540e-01;SOR=0.945;set=variant	GT:AD:DP:GQ:PL	0/1:30,17:47:99:420,0,730
chr2	173368989	.	TA	T	156.62	my_filter	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.337e+00;ClippingRankSum=0.00;DP=223;ExcessHet=6.5821;FS=7.383;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=1.78;ReadPosRankSum=0.155;SOR=0.218;set=FilteredInAll	GT:AD:DP:GQ:PL	0/1:30,9:39:99:101,0,672
chr2	175436940	.	G	A	11987.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-4.400e-02;ClippingRankSum=0.00;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.81;ReadPosRankSum=-4.560e-01;SOR=0.907;set=variant	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1690,165,0
chr2	175624107	.	GA	G	3770.43	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.00;DP=442;ExcessHet=3.9991;FS=2.707;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.86;ReadPosRankSum=-3.080e-01;SOR=0.536;set=variant2	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1611,180,0
chr2	178494173	.	G	GGGA	33044.58	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=2.11;ClippingRankSum=0.00;DP=853;ExcessHet=3.2736;FS=0.980;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.82;ReadPosRankSum=-2.050e-01;SOR=0.513;set=variant2	GT:AD:DP:GQ:PL	1/1:0,101:101:99:4880,342,0
chr2	178936373	.	T	G	33760.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=3.96;ClippingRankSum=0.00;DP=1158;ExcessHet=3.0103;FS=1.236;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.46;ReadPosRankSum=-4.700e-02;SOR=0.509;set=variant	GT:AD:DP:GQ:PL	1/1:0,194:194:99:6357,583,0
chr2	178936614	.	C	T	22110.45	PASS	AC=2;AF=1.00;AN=2;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.36;SOR=1.819;set=variant	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3818,343,0
chr2	179414162	.	T	C	1568.83	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-8.180e-01;ClippingRankSum=0.00;DP=123;ExcessHet=2.5097;FS=5.745;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=20.64;ReadPosRankSum=0.860;SOR=0.253;set=variant	GT:AD:DP:GQ:PL	1/1:0,24:24:72:844,72,0
chr2	179444768	.	C	G	8694.45	PASS	AC=2;AF=1.00;AN=2;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.67;SOR=0.815;set=variant	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1342,123,0
chr2	179458002	.	G	A	3723.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-8.160e-01;ClippingRankSum=0.00;DP=345;ExcessHet=2.5097;FS=0.560;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=18.16;ReadPosRankSum=-1.148e+00;SOR=0.764;set=variant	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1866,177,0
chr2	179497018	.	G	A	2913.15	PASS	AC=2;AF=0.278;AN=2;BaseQRankSum=-1.041e+00;ClippingRankSum=0.00;DP=376;ExcessHet=1.5127;FS=1.211;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=15.92;ReadPosRankSum=0.899;SOR=0.815;set=variant	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1915,195,0
chr2	179585266	.	C	T	18253.45	PASS	AC=2;AF=1.00;AN=2;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.22;SOR=0.783;set=variant	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3184,312,0
chr2	179600563	.	G	A	20277.45	PASS	AC=2;AF=1.00;AN=2;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.91;SOR=0.762;set=variant	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3057,271,0
chr2	179600648	.	C	T	5729.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.107e+00;ClippingRankSum=0.00;DP=627;ExcessHet=3.9991;FS=3.372;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.32;ReadPosRankSum=-9.400e-02;SOR=0.912;set=variant	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3226,294,0
chr2	179604160	.	T	G	10565.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=1.89;ClippingRankSum=0.00;DP=711;ExcessHet=3.9991;FS=2.595;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=17.61;ReadPosRankSum=1.19;SOR=0.914;set=variant	GT:AD:DP:GQ:PL	1/1:0,147:147:99:5000,442,0
chr2	179604366	.	T	G	13283.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=2.22;ClippingRankSum=0.00;DP=928;ExcessHet=3.9991;FS=1.783;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.96;ReadPosRankSum=0.022;SOR=0.849;set=variant	GT:AD:DP:GQ:PL	1/1:1,194:195:99:6760,553,0
chr2	179604742	.	G	A	10054.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.00;DP=656;ExcessHet=3.9991;FS=0.557;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=18.65;ReadPosRankSum=0.266;SOR=0.627;set=variant	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4786,442,0
chr2	179605180	.	C	A,T	6791.10	PASS	AC=2,0;AF=0.389,0.167;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.00;DP=433;ExcessHet=6.2536;FS=0.000;MLEAC=7,3;MLEAF=0.389,0.167;MQ=60.00;MQRankSum=0.00;QD=17.41;ReadPosRankSum=0.217;SOR=0.705;set=variant	GT:AD:DP:GQ:PL	1/1:0,91,0:91:99:3068,274,0,3068,274,3068
chr2	179605705	.	A	G	13114.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=1.57;ClippingRankSum=0.00;DP=936;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.31;ReadPosRankSum=0.689;SOR=0.698;set=variant	GT:AD:DP:GQ:PL	1/1:1,206:207:99:6560,587,0
chr2	179606538	.	G	A	11039.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-8.340e-01;ClippingRankSum=0.00;DP=722;ExcessHet=6.2536;FS=1.151;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.28;ReadPosRankSum=-8.240e-01;SOR=0.804;set=variant	GT:AD:DP:GQ:PL	1/1:3,109:112:99:3160,247,0
chr2	179611711	.	C	A	5829.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.546e+00;ClippingRankSum=0.00;DP=514;ExcessHet=3.9991;FS=12.533;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.61;ReadPosRankSum=-5.760e-01;SOR=1.228;set=variant	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2942,279,0
chr2	179614952	.	A	G	22923.45	PASS	AC=2;AF=1.00;AN=2;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.71;SOR=0.837;set=variant	GT:AD:DP:GQ:PL	1/1:0,115:115:99:4140,346,0
chr2	179615931	.	C	G	13746.45	PASS	AC=2;AF=1.00;AN=2;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=34.63;SOR=0.719;set=variant	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2645,216,0
chr2	179615994	.	T	C	11229.45	PASS	AC=2;AF=1.00;AN=2;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.81;SOR=1.228;set=variant	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2094,186,0
chr2	179621477	.	C	T	10545.45	PASS	AC=2;AF=1.00;AN=2;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.81;SOR=1.295;set=variant	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1642,168,0
chr2	179629363	.	T	C	16372.45	PASS	AC=2;AF=1.00;AN=2;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.55;SOR=0.799;set=variant	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2583,255,0
chr2	179631214	.	T	C	6081.65	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.00;DP=563;ExcessHet=9.7754;FS=1.733;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=11.67;ReadPosRankSum=0.377;SOR=0.832;set=variant	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2093,201,0
chr2	179634936	.	C	T	4869.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.187e+00;ClippingRankSum=0.00;DP=481;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.16;ReadPosRankSum=-1.180e-01;SOR=0.676;set=variant	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1960,198,0
chr2	179637861	.	C	G	8345.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=1.72;ClippingRankSum=0.00;DP=740;ExcessHet=3.9991;FS=6.234;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.48;ReadPosRankSum=-7.180e-01;SOR=1.094;set=variant	GT:AD:DP:GQ:PL	1/1:1,108:109:99:3929,289,0
chr2	179641975	.	C	T	2659.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.00;DP=318;ExcessHet=3.9991;FS=2.356;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.49;ReadPosRankSum=0.715;SOR=0.537;set=variant	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1341,135,0
chr2	179642425	.	G	A	2769.98	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.928e+00;ClippingRankSum=0.00;DP=95;ExcessHet=3.0103;FS=9.253;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=29.16;ReadPosRankSum=-2.730e+00;SOR=0.129;set=variant	GT:AD:DP:GQ:PL	1/1:0,13:13:39:449,39,0
chr2	179644035	.	G	A	14304.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.560e+00;ClippingRankSum=0.00;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.56;ReadPosRankSum=-2.201e+00;SOR=0.885;set=variant	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2171,219,0
chr2	179644160	.	T	C	2768.47	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=1.73;ClippingRankSum=0.00;DP=247;ExcessHet=3.9991;FS=1.413;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.88;ReadPosRankSum=-3.250e-01;SOR=0.559;set=variant	GT:AD:DP:GQ:PL	1/1:2,32:34:53:1096,53,0
chr2	179647546	.	A	G	2236.72	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=3.18;ClippingRankSum=0.00;DP=159;ExcessHet=3.9991;FS=0.902;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=19.79;ReadPosRankSum=0.160;SOR=0.864;set=variant	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1056,81,0
chr2	182374534	.	A	G	7745.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-1.171e+00;ClippingRankSum=0.00;DP=388;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=21.40;ReadPosRankSum=0.697;SOR=0.679;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1510,150,0
chr2	182395345	.	G	A	6979.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=1.42;ClippingRankSum=0.00;DP=378;ExcessHet=4.8226;FS=2.583;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=19.55;ReadPosRankSum=0.773;SOR=0.864;set=variant	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1393,144,0
chr2	182399097	.	T	C	6773.34	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.87;ClippingRankSum=0.00;DP=282;ExcessHet=0.4012;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=26.67;ReadPosRankSum=0.212;SOR=0.820;set=variant	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1248,126,0
chr2	182399638	.	A	G	13491.45	PASS	AC=2;AF=1.00;AN=2;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.81;SOR=0.848;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2313,204,0
chr2	182401566	.	C	T	3256.53	PASS	AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.72;SOR=2.685;set=variant	GT:AD:DP:GQ:PL	1/1:0,23:23:69:741,69,0
chr2	182401752	.	G	A	2345.38	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-6.230e-01;ClippingRankSum=0.00;DP=181;ExcessHet=5.1594;FS=9.436;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=17.25;ReadPosRankSum=0.085;SOR=1.190;set=variant	GT:AD:DP:GQ:PL	1/1:2,34:36:59:1097,59,0
chr2	182402031	.	C	T	16914.45	PASS	AC=2;AF=1.00;AN=2;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.92;SOR=1.034;set=variant	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3979,364,0
chr2	182402790	.	G	A	7814.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=1.56;ClippingRankSum=0.00;DP=290;ExcessHet=4.8226;FS=1.432;MLEAC=14;MLEAF=0.778;MQ=59.97;MQRankSum=0.00;QD=27.23;ReadPosRankSum=0.078;SOR=0.577;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1526,132,0
chr2	182403851	.	G	A	7087.45	PASS	AC=2;AF=1.00;AN=2;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.04;QD=28.24;SOR=1.051;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:892,93,0
chr2	182521578	.	G	A	17380.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=1.05;ClippingRankSum=0.00;DP=983;ExcessHet=1.8603;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=19.38;ReadPosRankSum=0.085;SOR=0.674;set=variant	GT:AD:DP:GQ:PL	1/1:1,156:157:99:4769,437,0
chr2	182543455	.	T	C	9855.60	PASS	AC=2;AF=0.889;AN=2;DP=285;ExcessHet=0.1296;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;QD=32.17;SOR=5.994;set=variant	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2431,178,0
chr2	183799558	.	G	C	6250.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.824e+00;ClippingRankSum=0.00;DP=240;ExcessHet=3.0103;FS=7.883;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.54;ReadPosRankSum=0.348;SOR=0.238;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1052,96,0
chr2	185800905	.	A	T	19365.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-2.320e-01;ClippingRankSum=0.00;DP=1049;ExcessHet=8.3924;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=18.69;ReadPosRankSum=0.668;SOR=0.686;set=variant	GT:AD:DP:GQ:PL	0/1:72,104:176:99:2687,0,1757
chr2	185801747	.	G	A	10377.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-1.793e+00;ClippingRankSum=0.00;DP=512;ExcessHet=8.3924;FS=0.521;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.31;ReadPosRankSum=0.803;SOR=0.670;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:69,40:109:99:0|1:185801747_G_A:1441,0,4031
chr2	185801755	.	A	G	10236.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.00;DP=490;ExcessHet=8.3924;FS=0.516;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.98;ReadPosRankSum=0.588;SOR=0.660;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:65,38:103:99:0|1:185801747_G_A:1416,0,3985
chr2	185802211	.	C	CACA	9296.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.00;DP=442;ExcessHet=11.4027;FS=4.171;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=21.57;ReadPosRankSum=0.501;SOR=0.972;set=variant2	GT:AD:DP:GQ:PL	0/1:47,33:80:99:1244,0,2120
chr2	185802243	.	C	A	7765.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-2.227e+00;ClippingRankSum=0.00;DP=462;ExcessHet=8.3924;FS=1.785;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=16.81;ReadPosRankSum=-1.092e+00;SOR=0.554;set=variant	GT:AD:DP:GQ:PL	0/1:45,37:82:99:926,0,1333
chr2	185802363	.	A	G	9072.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.00;DP=614;ExcessHet=8.3924;FS=1.100;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=14.78;ReadPosRankSum=0.925;SOR=0.602;set=variant	GT:AD:DP:GQ:PL	0/1:59,47:106:99:1199,0,1540
chr2	189863389	.	C	T	2113.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-3.410e-01;ClippingRankSum=0.00;DP=511;ExcessHet=6.2839;FS=4.298;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=8.03;ReadPosRankSum=1.46;SOR=0.954;set=variant	GT:AD:DP:GQ:PL	0/1:40,28:68:99:658,0,1123
chr2	189864080	.	G	A	2573.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-6.770e-01;ClippingRankSum=0.00;DP=325;ExcessHet=6.2839;FS=1.200;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.47;ReadPosRankSum=0.793;SOR=0.824;set=variant	GT:AD:DP:GQ:PL	0/1:22,25:47:99:672,0,675
chr2	189875421	.	T	G	31994.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.630e-01;ClippingRankSum=0.00;DP=1064;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=30.41;ReadPosRankSum=-3.560e-01;SOR=0.968;set=variant	GT:AD:DP:GQ:PL	1/1:0,193:193:99:6153,579,0
chr2	189907937	.	A	G	6673.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=2.58;ClippingRankSum=0.00;DP=272;ExcessHet=3.2736;FS=2.608;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.57;ReadPosRankSum=-6.860e-01;SOR=0.454;set=variant	GT:AD:DP:GQ:PL	0/1:14,30:44:99:833,0,234
chr2	189932831	.	T	C	6197.62	PASS	AC=1;AF=0.889;AN=2;BaseQRankSum=-1.000e-01;ClippingRankSum=0.00;DP=258;ExcessHet=3.2736;FS=0.668;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.50;ReadPosRankSum=1.41;SOR=0.817;set=variant	GT:AD:DP:GQ:PL	0/1:16,22:38:99:574,0,401
chr2	190430177	.	A	G	8398.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.00;DP=562;ExcessHet=2.5097;FS=1.141;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=16.90;ReadPosRankSum=0.072;SOR=0.782;set=variant	GT:AD:DP:GQ:PL	1/1:1,68:69:99:2104,171,0
chr2	191161622	.	T	C	7815.63	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.00;DP=429;ExcessHet=4.8226;FS=0.560;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=18.26;ReadPosRankSum=0.237;SOR=0.714;set=variant	GT:AD:DP:GQ:PL	0/1:29,33:62:99:875,0,706
chr2	200173684	.	T	G	5301.46	PASS	AC=2;AF=1.00;AN=2;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.93;SOR=1.959;set=variant	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1182,105,0
chr2	202252539	.	G	A	6576.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-1.441e+00;ClippingRankSum=0.00;DP=452;ExcessHet=3.4788;FS=1.897;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=0.187;SOR=0.574;set=variant	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2220,216,0
chr2	202260049	.	G	A	10918.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.00;DP=396;ExcessHet=3.0103;FS=2.090;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.00;ReadPosRankSum=0.801;SOR=1.034;set=variant	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1852,186,0
chr2	202528830	.	A	AT	7209.06	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-2.280e-01;ClippingRankSum=0.00;DP=512;ExcessHet=6.2536;FS=0.528;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.46;ReadPosRankSum=-4.450e-01;SOR=0.643;set=variant2	GT:AD:DP:GQ:PL	0/1:34,21:55:99:497,0,833
chr2	202557702	.	C	T	11158.45	PASS	AC=2;AF=1.00;AN=2;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.04;SOR=0.703;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1617,171,0
chr2	202558687	.	C	T	961.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-5.340e-01;ClippingRankSum=0.00;DP=411;ExcessHet=3.0103;FS=4.333;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.73;ReadPosRankSum=0.082;SOR=0.351;set=variant	GT:AD:DP:GQ:PL	0/1:39,43:82:99:996,0,930
chr2	202575821	.	G	A	5458.91	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=-7.480e-01;ClippingRankSum=0.00;DP=204;ExcessHet=3.0103;FS=1.418;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.29;ReadPosRankSum=-1.180e-01;SOR=0.389;set=variant	GT:AD:DP:GQ:PL	0/1:9,8:17:99:208,0,248
chr2	202598113	.	C	T	17681.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-2.543e+00;ClippingRankSum=0.00;DP=976;ExcessHet=2.5097;FS=0.586;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=19.71;ReadPosRankSum=-4.460e-01;SOR=0.615;set=variant	GT:AD:DP:GQ:PL	0/1:88,82:170:99:2092,0,2428
chr2	202625615	.	C	T	5032.45	PASS	AC=2;AF=1.00;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.11;SOR=4.776;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1012,93,0
chr2	204824324	.	A	C	1828.17	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.00;DP=229;ExcessHet=15.7960;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=9.88;ReadPosRankSum=-1.280e-01;SOR=0.718;set=variant	GT:AD:DP:GQ:PL	0/1:30,15:45:99:317,0,686
chr2	205829991	.	C	T	32670.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.00;DP=1220;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.91;ReadPosRankSum=-1.534e+00;SOR=0.928;set=variant	GT:AD:DP:GQ:PL	1/1:0,165:165:99:4995,495,0
chr2	205969220	.	G	A	7247.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-3.040e-01;ClippingRankSum=0.00;DP=361;ExcessHet=1.5127;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.58;ReadPosRankSum=-7.490e-01;SOR=0.686;set=variant	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1782,192,0
chr2	205990353	.	C	T	10094.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-9.540e-01;ClippingRankSum=0.00;DP=683;ExcessHet=6.2536;FS=0.000;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.33;ReadPosRankSum=-5.440e-01;SOR=0.700;set=variant	GT:AD:DP:GQ:PL	1/1:1,74:75:99:2363,186,0
chr2	206364737	.	T	C	8801.78	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.00;DP=473;ExcessHet=0.3904;FS=0.579;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=23.22;ReadPosRankSum=0.992;SOR=0.762;set=variant	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1962,198,0
chr2	206581033	.	G	A	7170.45	PASS	AC=2;AF=1.00;AN=2;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.63;SOR=1.476;set=variant	GT:AD:DP:GQ:PL	1/1:0,27:27:81:864,81,0
chr2	206592695	.	T	C	2833.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.00;DP=274;ExcessHet=6.2536;FS=1.536;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=11.71;ReadPosRankSum=0.290;SOR=0.665;set=variant	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1072,114,0
chr2	206608039	.	T	C	6962.45	PASS	AC=2;AF=1.00;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=34.81;SOR=2.375;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1191,96,0
chr2	206610502	.	T	G	1761.61	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.58;ClippingRankSum=0.00;DP=410;ExcessHet=0.8432;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=9.79;ReadPosRankSum=0.497;SOR=0.716;set=variant	GT:AD:DP:GQ:PL	0/1:47,36:83:99:771,0,993
chr2	207008763	.	C	A	3383.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.368e+00;ClippingRankSum=0.00;DP=306;ExcessHet=6.2536;FS=1.023;MLEAC=8;MLEAF=0.444;MQ=60.13;MQRankSum=0.00;QD=14.16;ReadPosRankSum=0.703;SOR=0.620;set=variant	GT:AD:DP:GQ:PL	0/1:25,24:49:99:587,0,697
chr2	207025444	.	T	C	3818.12	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.67;ClippingRankSum=0.00;DP=323;ExcessHet=6.2536;FS=0.444;MLEAC=8;MLEAF=0.444;MQ=59.78;MQRankSum=0.00;QD=13.99;ReadPosRankSum=0.054;SOR=0.644;set=variant	GT:AD:DP:GQ:PL	0/1:26,13:39:99:354,0,698
chr2	207041053	.	T	C	9730.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=2.81;ClippingRankSum=0.00;DP=794;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.96;ReadPosRankSum=0.059;SOR=0.682;set=variant	GT:AD:DP:GQ:PL	0/1:86,67:153:99:1816,0,2078
chr2	207988613	.	C	T	29970.45	PASS	AC=2;AF=1.00;AN=2;DP=1048;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=59.30;QD=29.35;SOR=0.743;set=variant	GT:AD:DP:GQ:PL	1/1:0,193:193:99:5858,579,0
chr2	207998800	.	C	T	4517.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.00;DP=248;ExcessHet=3.8535;FS=8.059;MLEAC=15;MLEAF=0.833;MQ=60.09;MQRankSum=0.00;QD=18.44;ReadPosRankSum=1.07;SOR=1.188;set=variant	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1146,123,0
chr2	208977161	.	C	T	8454.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-1.778e+00;ClippingRankSum=0.00;DP=793;ExcessHet=2.5097;FS=1.775;MLEAC=6;MLEAF=0.333;MQ=57.08;MQRankSum=4.88;QD=14.81;ReadPosRankSum=0.120;SOR=0.584;set=variant	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4251,441,0
chr2	208986637	.	T	C	5094.35	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-5.310e-01;ClippingRankSum=0.00;DP=196;ExcessHet=0.4012;FS=3.240;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=28.78;ReadPosRankSum=-1.450e+00;SOR=0.624;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1303,132,0
chr2	208988920	.	G	C	1176.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-4.080e-01;ClippingRankSum=0.00;DP=579;ExcessHet=3.0103;FS=8.526;MLEAC=1;MLEAF=0.056;MQ=84.73;MQRankSum=-8.309e+00;QD=9.19;ReadPosRankSum=2.01;SOR=1.266;set=variant	GT:AD:DP:GQ:PL	0/1:82,46:128:99:1211,0,2364
chr2	209007559	.	T	G	9251.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=533;ExcessHet=0.7786;FS=0.621;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=22.56;ReadPosRankSum=-8.440e-01;SOR=0.627;set=variant	GT:AD:DP:GQ:PL	0/1:42,46:88:99:1208,0,1018
chr2	209184980	.	G	A	7345.45	PASS	AC=2;AF=1.00;AN=2;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.73;SOR=1.680;set=variant	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1328,129,0
chr2	209184999	.	C	T	7522.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.145e+00;ClippingRankSum=0.00;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.06;ReadPosRankSum=-1.498e+00;SOR=0.629;set=variant	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1345,138,0
chr2	209190330	.	T	C	20686.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.00;DP=742;ExcessHet=3.0103;FS=1.125;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.15;ReadPosRankSum=0.393;SOR=0.512;set=variant	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3650,342,0
chr2	209190519	.	A	T	19562.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.00;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=30.77;ReadPosRankSum=0.221;SOR=0.757;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,76:76:99:1|1:209190519_A_T:3540,238,0
chr2	209190528	.	C	G	19822.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.00;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.07;ReadPosRankSum=1.31;SOR=0.836;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,83:83:99:1|1:209190519_A_T:3654,250,0
chr2	209191082	.	C	A	1104.66	PASS	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=12;MLEAF=1.00;MQ=57.29;QD=27.93;SOR=6.932;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,8:8:24:.:.:285,24,0
chr2	209191099	.	T	C	840.81	PASS	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=12;MLEAF=1.00;MQ=58.83;QD=33.63;SOR=6.518;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,6:6:18:.:.:208,18,0
chr2	209209827	.	G	A	10198.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-3.990e-01;ClippingRankSum=0.00;DP=392;ExcessHet=3.0103;FS=2.031;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.91;ReadPosRankSum=-4.580e-01;SOR=1.059;set=variant	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1586,159,0
chr2	209212707	.	G	A	5958.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-7.350e-01;ClippingRankSum=0.00;DP=231;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.91;ReadPosRankSum=2.42;SOR=0.647;set=variant	GT:AD:DP:GQ:PL	1/1:0,23:23:69:758,69,0
chr2	209214770	.	A	G	5704.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.00;DP=204;ExcessHet=3.0103;FS=3.220;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.24;ReadPosRankSum=0.431;SOR=0.605;set=variant	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1034,99,0
chr2	209215586	.	A	G	6927.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.00;DP=229;ExcessHet=3.0103;FS=1.363;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=31.07;ReadPosRankSum=1.39;SOR=1.189;set=variant	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1504,135,0
chr2	210685100	.	G	A	3801.34	PASS	AC=2;AF=0.167;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.00;DP=486;ExcessHet=0.4012;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=20.44;ReadPosRankSum=-8.920e-01;SOR=0.678;set=variant	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3191,336,0
chr2	210685367	.	C	T	277.63	PASS	AC=2;AF=0.111;AN=2;DP=56;ExcessHet=0.1472;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;QD=30.85;SOR=4.615;set=variant	GT:AD:DP:GQ:PL	1/1:0,9:9:27:322,27,0
chr2	210690624	.	G	T	912.06	PASS	AC=2;AF=0.111;AN=2;DP=121;ExcessHet=0.3572;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;QD=26.83;SOR=1.085;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:957,102,0
chr2	210745681	.	C	A	8944.45	PASS	AC=2;AF=1.00;AN=2;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.61;SOR=1.017;set=variant	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1765,201,0
chr2	210843383	.	G	A	14475.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-4.500e-01;ClippingRankSum=0.00;DP=861;ExcessHet=2.5097;FS=0.000;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=18.28;ReadPosRankSum=-7.510e-01;SOR=0.697;set=variant	GT:AD:DP:GQ:PL	0/1:80,63:143:99:1267,0,1793
chr2	211421452	.	A	ATCT	5002.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-3.600e-02;ClippingRankSum=0.00;DP=229;ExcessHet=6.2536;FS=1.123;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=25.01;ReadPosRankSum=0.172;SOR=0.797;set=variant2	GT:AD:DP:GQ:PL	1/1:1,29:30:41:1313,41,0
chr2	212251864	.	T	C	5058.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=2.63;ClippingRankSum=0.00;DP=522;ExcessHet=2.5097;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.31;ReadPosRankSum=-5.200e-01;SOR=0.700;set=variant	GT:AD:DP:GQ:PL	0/1:72,46:118:99:1171,0,1801
chr2	212285339	.	AAAAG	A	2879.78	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.00;DP=314;ExcessHet=8.3924;FS=0.524;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.91;ReadPosRankSum=-7.390e-01;SOR=0.623;set=variant2	GT:AD:DP:GQ:PL	0/1:24,26:50:99:1020,0,1319
chr2	212578379	.	TA	T	207.94	PASS	AC=1;AF=0.250;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.00;DP=55;ExcessHet=1.3830;FS=5.972;MLEAC=5;MLEAF=0.313;MQ=54.95;MQRankSum=0.00;QD=9.90;ReadPosRankSum=-2.980e-01;SOR=2.985;set=variant2	GT:AD:DP:GQ:PL	0/1:5,5:10:69:92,0,69
chr2	214228792	.	C	T	10779.45	PASS	AC=2;AF=1.00;AN=2;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.29;SOR=1.117;set=variant	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1772,183,0
chr2	214727221	.	A	C	15911.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=2.33;ClippingRankSum=0.00;DP=728;ExcessHet=1.5127;FS=0.741;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=24.94;ReadPosRankSum=-4.900e-01;SOR=0.636;set=variant	GT:AD:DP:GQ:PL	1/1:1,102:103:99:3329,276,0
chr2	215632256	.	A	G	5567.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.00;DP=254;ExcessHet=4.8226;FS=1.056;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=22.18;ReadPosRankSum=0.037;SOR=0.605;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:1,39:40:84:.:.:1090,84,0
chr2	215645545	.	C	G	5034.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.00;DP=673;ExcessHet=3.8535;FS=1.094;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=11.63;ReadPosRankSum=1.69;SOR=0.602;set=variant	GT:AD:DP:GQ:PL	0/1:99,104:203:99:2569,0,2466
chr2	215674224	.	G	A	17748.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=-2.314e+00;ClippingRankSum=0.00;DP=1016;ExcessHet=2.5097;FS=2.768;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=19.48;ReadPosRankSum=0.392;SOR=0.505;set=variant	GT:AD:DP:GQ:PL	0/1:86,73:159:99:1714,0,2461
chr2	215815807	.	C	A	816.72	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.763e+00;ClippingRankSum=0.00;DP=118;ExcessHet=4.8226;FS=2.822;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=13.39;ReadPosRankSum=-1.240e-01;SOR=0.330;set=variant	GT:AD:DP:GQ:PL	0/1:8,13:21:99:341,0,260
chr2	215820013	.	G	A	4332.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640e-01;ClippingRankSum=0.00;DP=456;ExcessHet=9.7754;FS=4.196;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=10.65;ReadPosRankSum=-7.000e-02;SOR=0.993;set=variant	GT:AD:DP:GQ:PL	0/1:42,31:73:99:789,0,1138
chr2	215876166	.	A	T	11913.45	PASS	AC=2;AF=1.00;AN=2;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.56;SOR=2.038;set=variant	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1818,171,0
chr2	216190020	.	C	G	1432.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.00;DP=265;ExcessHet=1.5127;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.37;ReadPosRankSum=0.600;SOR=0.647;set=variant	GT:AD:DP:GQ:PL	0/1:19,11:30:99:281,0,535
chr2	216229692	.	A	G	3056.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.75;ClippingRankSum=0.00;DP=395;ExcessHet=1.5127;FS=0.577;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=16.61;ReadPosRankSum=0.225;SOR=0.757;set=variant	GT:AD:DP:GQ:PL	0/1:26,32:58:99:736,0,547
chr2	216235089	.	C	T	10496.45	PASS	AC=2;AF=1.00;AN=2;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=26.85;SOR=0.937;set=variant	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1346,141,0
chr2	216240126	.	AAC	A	6795.41	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-4.590e-01;ClippingRankSum=0.00;DP=306;ExcessHet=0.9154;FS=0.545;MLEAC=11;MLEAF=0.611;MQ=61.26;MQRankSum=1.02;QD=28.92;ReadPosRankSum=-9.820e-01;SOR=0.631;set=variant2	GT:AD:DP:GQ:PL	0/1:21,22:43:99:789,0,849
chr2	216242917	.	T	A	8286.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-5.930e-01;ClippingRankSum=0.00;DP=580;ExcessHet=0.9154;FS=2.715;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.01;ReadPosRankSum=-1.309e+00;SOR=0.924;set=variant	GT:AD:DP:GQ:PL	0/1:57,45:102:99:962,0,1335
chr2	216249587	.	C	T	11538.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.87;ClippingRankSum=0.00;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.92;ReadPosRankSum=-4.780e-01;SOR=0.733;set=variant	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1424,135,0
chr2	216269209	.	T	G	2051.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.548e+00;ClippingRankSum=0.00;DP=373;ExcessHet=1.5127;FS=1.096;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.47;ReadPosRankSum=1.96;SOR=0.614;set=variant	GT:AD:DP:GQ:PL	0/1:34,19:53:99:328,0,763
chr2	216269254	.	T	G	1683.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-7.820e-01;ClippingRankSum=0.00;DP=265;ExcessHet=1.5127;FS=3.203;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=0.564;SOR=0.772;set=variant	GT:AD:DP:GQ:PL	0/1:17,17:34:99:336,0,348
chr2	216272900	.	T	G	10605.45	PASS	AC=2;AF=1.00;AN=2;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=25.91;SOR=1.040;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,50:50:99:1|1:216272900_T_G:1766,150,0
chr2	216272907	.	A	T	5725.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=1.38;ClippingRankSum=0.00;DP=276;ExcessHet=2.5097;FS=3.888;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=23.76;ReadPosRankSum=0.054;SOR=0.979;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:29,19:48:99:0|1:216272900_T_G:449,0,675
chr2	216283958	.	T	A	1114.39	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=-1.645e+00;ClippingRankSum=0.00;DP=60;ExcessHet=0.5153;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=25.33;ReadPosRankSum=0.00;SOR=0.800;set=variant	GT:AD:DP:GQ:PL	0/1:5,6:11:99:137,0,157
chr2	216299550	.	G	A	4476.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.00;DP=501;ExcessHet=2.5097;FS=2.874;MLEAC=12;MLEAF=0.667;MQ=65.92;MQRankSum=0.00;QD=10.84;ReadPosRankSum=-3.293e+00;SOR=0.942;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:86,9:95:99:0|1:216299550_G_A:119,0,5105
chr2	216299551	.	C	A	4476.80	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.00;DP=504;ExcessHet=2.5097;FS=2.874;MLEAC=12;MLEAF=0.667;MQ=65.96;MQRankSum=0.00;QD=10.79;ReadPosRankSum=-3.142e+00;SOR=0.950;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:86,9:95:99:0|1:216299550_G_A:119,0,5105
chr2	216300482	.	T	A	12823.36	PASS	AC=1;AF=0.833;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.00;DP=574;ExcessHet=3.8535;FS=2.252;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.82;ReadPosRankSum=-1.195e+00;SOR=0.491;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:48,45:93:99:.:.:1139,0,1168
chr2	216904019	.	A	T	595.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.500e-01;ClippingRankSum=0.00;DP=408;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=7.27;ReadPosRankSum=1.09;SOR=0.753;set=variant	GT:AD:DP:GQ:PL	0/1:50,32:82:99:630,0,1137
chr2	216908679	.	C	T	233.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.500e-02;ClippingRankSum=0.00;DP=366;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=3.71;ReadPosRankSum=-5.350e-01;SOR=0.733;set=variant	GT:AD:DP:GQ:PL	0/1:46,17:63:99:268,0,1049
chr2	216923679	.	C	T	1411.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.623e+00;ClippingRankSum=0.00;DP=462;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=12.95;ReadPosRankSum=0.698;SOR=0.647;set=variant	GT:AD:DP:GQ:PL	0/1:46,63:109:99:1446,0,1193
chr2	217012901	.	A	G	24898.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.60;ClippingRankSum=0.00;DP=949;ExcessHet=3.0103;FS=2.357;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.26;ReadPosRankSum=-7.780e-01;SOR=0.659;set=variant	GT:AD:DP:GQ:PL	1/1:1,157:158:99:4509,438,0
chr2	217279768	.	G	A	1248.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.168e+00;ClippingRankSum=0.00;DP=386;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=12.88;ReadPosRankSum=0.759;SOR=0.527;set=variant	GT:AD:DP:GQ:PL	0/1:47,50:97:99:1283,0,1272
chr2	217285119	.	C	T	2300.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-8.630e-01;ClippingRankSum=0.00;DP=442;ExcessHet=3.8535;FS=1.632;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=10.46;ReadPosRankSum=0.765;SOR=0.815;set=variant	GT:AD:DP:GQ:PL	0/1:51,45:96:99:1035,0,1260
chr2	217541582	.	T	C	13540.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.96;ClippingRankSum=0.00;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=25.45;ReadPosRankSum=1.72;SOR=0.709;set=variant	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2320,240,0
chr2	219029108	.	C	G	1275.63	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.31;ClippingRankSum=0.00;DP=306;ExcessHet=3.2736;FS=1.808;MLEAC=2;MLEAF=0.111;MQ=59.68;MQRankSum=0.00;QD=14.02;ReadPosRankSum=0.144;SOR=0.938;set=variant	GT:AD:DP:GQ:PL	0/1:27,29:56:99:903,0,755
chr2	219252630	.	C	T	5329.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.08;ClippingRankSum=0.00;DP=944;ExcessHet=3.8535;FS=2.470;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.94;ReadPosRankSum=1.35;SOR=0.936;set=variant	GT:AD:DP:GQ:PL	0/1:142,126:268:99:2802,0,3126
chr2	219254622	.	A	G	10616.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;ClippingRankSum=0.00;DP=360;ExcessHet=3.0103;FS=2.844;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=29.57;ReadPosRankSum=1.17;SOR=1.812;set=variant	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1667,165,0
chr2	219259732	.	G	A	3477.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.509e+00;ClippingRankSum=0.00;DP=446;ExcessHet=6.2839;FS=3.812;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=11.22;ReadPosRankSum=0.404;SOR=0.904;set=variant	GT:AD:DP:GQ:PL	0/1:39,36:75:99:908,0,1066
chr2	219526634	.	G	A	1717.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.00;DP=434;ExcessHet=3.2736;FS=1.136;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=9.14;ReadPosRankSum=0.410;SOR=0.590;set=variant	GT:AD:DP:GQ:PL	0/1:47,49:96:99:996,0,1032
chr2	219692790	.	A	AG	6062.41	PASS	AC=2;AF=1.00;AN=2;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=33.31;SOR=1.744;set=variant2	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1310,117,0
chr2	219920037	.	A	G	13351.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-1.510e-01;ClippingRankSum=0.00;DP=555;ExcessHet=3.2736;FS=1.644;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=24.41;ReadPosRankSum=2.30;SOR=0.564;set=variant	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2715,261,0
chr2	219920412	.	A	G	14537.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.79;ClippingRankSum=0.00;DP=961;ExcessHet=1.8603;FS=1.153;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=16.71;ReadPosRankSum=0.218;SOR=0.608;set=variant	GT:AD:DP:GQ:PL	0/1:106,78:184:99:1916,0,2752
chr2	220083279	.	C	T	9277.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-1.713e+00;ClippingRankSum=0.00;DP=401;ExcessHet=3.8535;FS=1.867;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=25.77;ReadPosRankSum=-1.310e-01;SOR=0.562;set=variant	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1561,156,0
chr2	220283259	.	A	G	2828.93	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-5.430e-01;ClippingRankSum=0.00;DP=93;ExcessHet=3.0103;FS=2.469;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=30.42;ReadPosRankSum=-7.650e-01;SOR=1.743;set=variant	GT:AD:DP:GQ:PL	1/1:0,12:12:36:392,36,0
chr2	220283277	.	T	C	3335.92	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-4.650e-01;ClippingRankSum=0.00;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=33.70;ReadPosRankSum=0.136;SOR=0.984;set=variant	GT:AD:DP:GQ:PL	1/1:0,16:16:48:587,48,0
chr2	220285309	.	C	T	1442.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.00;DP=381;ExcessHet=6.2839;FS=1.103;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=6.41;ReadPosRankSum=0.783;SOR=0.808;set=variant	GT:AD:DP:GQ:PL	0/1:43,27:70:99:608,0,1080
chr2	220285666	.	G	C	1806.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.00;DP=272;ExcessHet=6.2839;FS=2.992;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=12.54;ReadPosRankSum=0.570;SOR=0.487;set=variant	GT:AD:DP:GQ:PL	0/1:18,30:48:99:757,0,453
chr2	220286142	.	G	A	3258.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-4.580e-01;ClippingRankSum=0.00;DP=479;ExcessHet=6.2839;FS=0.837;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=9.90;ReadPosRankSum=0.574;SOR=0.631;set=variant	GT:AD:DP:GQ:PL	0/1:57,54:111:99:1218,0,1350
chr2	220416942	.	G	C	8014.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-1.440e+00;ClippingRankSum=0.00;DP=642;ExcessHet=1.8603;FS=1.879;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=15.84;ReadPosRankSum=1.76;SOR=0.831;set=variant	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2219,234,0
chr2	220417266	.	C	T	11221.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.00;ClippingRankSum=0.00;DP=597;ExcessHet=1.8603;FS=0.663;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.83;ReadPosRankSum=-1.900e-02;SOR=0.843;set=variant	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2741,270,0
chr2	220419236	.	T	C	9312.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=3.07;ClippingRankSum=0.00;DP=349;ExcessHet=3.0103;FS=0.932;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.07;ReadPosRankSum=-1.774e+00;SOR=0.849;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1440,150,0
chr2	220419339	.	T	C	12151.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.00;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=25.80;ReadPosRankSum=2.33;SOR=0.547;set=variant	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1960,207,0
chr2	220420785	.	G	A	12096.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.11;ClippingRankSum=0.00;DP=871;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=16.19;ReadPosRankSum=1.51;SOR=0.714;set=variant	GT:AD:DP:GQ:PL	0/1:75,98:173:99:2168,0,1556
chr2	220420956	.	A	G	19624.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.00;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.22;ReadPosRankSum=1.41;SOR=0.831;set=variant	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3257,318,0
chr2	220421417	.	C	G	3167.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257e+00;ClippingRankSum=0.00;DP=177;ExcessHet=0.7786;FS=3.964;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=24.75;ReadPosRankSum=-3.100e-01;SOR=0.355;set=variant	GT:AD:DP:GQ:PL	0/1:17,19:36:99:573,0,546
chr2	220422774	.	A	G	10424.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-1.900e-02;ClippingRankSum=0.00;DP=595;ExcessHet=1.8603;FS=3.674;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.05;ReadPosRankSum=0.124;SOR=0.978;set=variant	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3760,363,0
chr2	220427347	.	G	T	1637.48	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.00;DP=147;ExcessHet=0.9154;FS=2.157;MLEAC=7;MLEAF=0.389;MQ=60.13;MQRankSum=0.00;QD=19.73;ReadPosRankSum=-6.190e-01;SOR=1.022;set=variant	GT:AD:DP:GQ:PL	0/1:14,16:30:99:349,0,286
chr2	220427395	.	G	A	628.33	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-2.655e+00;ClippingRankSum=0.00;DP=52;ExcessHet=0.1076;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.40;MQRankSum=0.00;QD=23.27;ReadPosRankSum=-2.057e+00;SOR=0.743;set=variant	GT:AD:DP:GQ:PL	0/1:4,5:9:99:147,0,133
chr2	220430203	.	C	T	6286.62	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-1.027e+00;ClippingRankSum=0.00;DP=261;ExcessHet=0.8432;FS=1.128;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=27.45;ReadPosRankSum=0.368;SOR=1.041;set=variant	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1231,123,0
chr2	220435034	.	A	G	5478.64	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=4.10;ClippingRankSum=0.00;DP=197;ExcessHet=0.8432;FS=1.571;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=32.04;ReadPosRankSum=3.04;SOR=0.565;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1253,93,0
chr2	220435375	.	G	A	1534.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-2.550e+00;ClippingRankSum=0.00;DP=277;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=11.12;ReadPosRankSum=0.623;SOR=0.712;set=variant	GT:AD:DP:GQ:PL	0/1:27,20:47:99:524,0,785
chr2	220439678	.	C	T	4923.45	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.00;DP=437;ExcessHet=0.9154;FS=0.453;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=17.52;ReadPosRankSum=-4.490e-01;SOR=0.748;set=variant	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1060,0,1150
chr2	220494118	.	A	C	17580.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.00;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=30.52;ReadPosRankSum=1.26;SOR=0.753;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,104:104:99:.:.:3239,312,0
chr2	220500423	.	A	G	9519.45	PASS	AC=2;AF=1.00;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.42;SOR=2.058;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,42:42:99:1|1:220500423_A_G:2033,141,0
chr2	220500426	.	A	G	9498.45	PASS	AC=2;AF=1.00;AN=2;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=24.50;SOR=2.060;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,46:46:99:1|1:220500423_A_G:1999,138,0
chr2	220502367	.	A	C	12893.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=2.09;ClippingRankSum=0.00;DP=582;ExcessHet=0.8432;FS=0.716;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=24.94;ReadPosRankSum=0.290;SOR=0.582;set=variant	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3314,294,0
chr2	220505265	.	T	C	15041.34	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=608;ExcessHet=0.4012;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=27.05;ReadPosRankSum=2.16;SOR=0.557;set=variant	GT:AD:DP:GQ:PL	1/1:2,104:106:99:3124,269,0
chr2	223161889	.	A	G	27055.45	PASS	AC=2;AF=1.00;AN=2;DP=859;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.57;SOR=1.474;set=variant	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4400,402,0
chr2	223917629	.	C	T	8752.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-5.030e-01;ClippingRankSum=0.00;DP=406;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.94;ReadPosRankSum=-5.500e-02;SOR=0.690;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,63:63:99:.:.:1866,189,0
chr2	223917812	.	T	C	7402.45	PASS	AC=2;AF=1.00;AN=2;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.75;SOR=2.762;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1131,102,0
chr2	223917983	.	T	G	7115.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-9.200e-02;ClippingRankSum=0.00;DP=329;ExcessHet=3.8535;FS=2.235;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.69;ReadPosRankSum=2.07;SOR=0.794;set=variant	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1438,138,0
chr2	225346646	.	T	C	1153.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.00;DP=380;ExcessHet=3.8535;FS=2.109;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=7.39;ReadPosRankSum=1.12;SOR=0.534;set=variant	GT:AD:DP:GQ:PL	0/1:37,27:64:99:700,0,953
chr2	225362478	.	C	T	695.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.478e+00;ClippingRankSum=0.00;DP=317;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=6.05;ReadPosRankSum=-1.550e-01;SOR=0.608;set=variant	GT:AD:DP:GQ:PL	0/1:30,13:43:99:246,0,822
chr2	225434445	.	A	G	3747.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.07;ClippingRankSum=0.00;DP=388;ExcessHet=1.8603;FS=2.598;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=13.01;ReadPosRankSum=0.531;SOR=0.872;set=variant	GT:AD:DP:GQ:PL	0/1:49,20:69:99:373,0,1157
chr2	227661043	.	T	C	6360.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.00;DP=631;ExcessHet=3.9991;FS=3.300;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=12.33;ReadPosRankSum=-1.168e+00;SOR=0.954;set=variant	GT:AD:DP:GQ:PL	0/1:65,43:108:99:1166,0,1760
chr2	227661395	.	TTGC	T	199.58	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-2.130e-01;ClippingRankSum=0.00;DP=362;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=2.43;ReadPosRankSum=1.66;SOR=0.487;set=variant2	GT:AD:DP:GQ:PL	0/1:43,6:49:99:123,0,1823
chr2	227872182	.	G	A	10116.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.00;DP=603;ExcessHet=0.9154;FS=0.595;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.09;ReadPosRankSum=0.931;SOR=0.760;set=variant	GT:AD:DP:GQ:PL	0/1:45,52:97:99:1174,0,1215
chr2	227872995	.	T	C	6881.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.00;DP=472;ExcessHet=0.9154;FS=0.818;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.11;ReadPosRankSum=-1.830e-01;SOR=0.758;set=variant	GT:AD:DP:GQ:PL	0/1:49,32:81:99:701,0,1183
chr2	227873028	.	A	G	6697.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=1.30;ClippingRankSum=0.00;DP=464;ExcessHet=0.9154;FS=4.138;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.91;ReadPosRankSum=0.289;SOR=0.912;set=variant	GT:AD:DP:GQ:PL	0/1:59,26:85:99:585,0,1448
chr2	227886773	.	A	G	8227.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.00;DP=522;ExcessHet=0.9154;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.45;ReadPosRankSum=-3.550e-01;SOR=0.705;set=variant	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1193,0,823
chr2	227892619	.	C	T	8374.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-9.990e-01;ClippingRankSum=0.00;DP=590;ExcessHet=0.9154;FS=0.573;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.23;ReadPosRankSum=0.453;SOR=0.805;set=variant	GT:AD:DP:GQ:PL	0/1:46,39:85:99:1005,0,1280
chr2	227892720	.	C	T	8088.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.826e+00;ClippingRankSum=0.00;DP=536;ExcessHet=0.9154;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.59;ReadPosRankSum=-4.970e-01;SOR=0.665;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:60,34:94:99:0|1:227892720_C_T:727,0,1715
chr2	227896652	.	C	G	9810.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.076e+00;ClippingRankSum=0.00;DP=574;ExcessHet=0.9154;FS=0.643;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.52;ReadPosRankSum=-2.160e-01;SOR=0.604;set=variant	GT:AD:DP:GQ:PL	0/1:34,63:97:99:1642,0,733
chr2	227896886	.	C	T	10341.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.029e+00;ClippingRankSum=0.00;DP=575;ExcessHet=0.9154;FS=2.197;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=21.11;ReadPosRankSum=0.081;SOR=0.523;set=variant	GT:AD:DP:GQ:PL	0/1:35,55:90:99:1378,0,842
chr2	227896976	.	C	T	4210.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-1.890e+00;ClippingRankSum=0.00;DP=248;ExcessHet=0.9154;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=21.48;ReadPosRankSum=-3.830e-01;SOR=0.761;set=variant	GT:AD:DP:GQ:PL	0/1:17,26:43:99:666,0,427
chr2	227915832	.	G	A	4187.45	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.00;DP=331;ExcessHet=0.9154;FS=2.755;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=15.68;ReadPosRankSum=0.024;SOR=0.565;set=variant	GT:AD:DP:GQ:PL	0/1:29,24:53:99:560,0,713
chr2	227954599	.	G	A	9647.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=6.000e-03;ClippingRankSum=0.00;DP=509;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=18.99;ReadPosRankSum=1.14;SOR=0.671;set=variant	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1505,159,0
chr2	228111435	.	T	C	4668.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.853e+00;ClippingRankSum=0.00;DP=172;ExcessHet=3.0103;FS=1.860;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.13;ReadPosRankSum=1.40;SOR=0.354;set=variant	GT:AD:DP:GQ:PL	1/1:0,26:26:78:764,78,0
chr2	228113175	.	A	G	20208.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=1.00;ClippingRankSum=0.00;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=27.91;ReadPosRankSum=0.293;SOR=0.793;set=variant	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3443,330,0
chr2	228115847	.	A	C	2243.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=2.61;ClippingRankSum=0.00;DP=419;ExcessHet=6.2839;FS=9.155;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=8.94;ReadPosRankSum=0.871;SOR=1.241;set=variant	GT:AD:DP:GQ:PL	0/1:37,29:66:99:853,0,975
chr2	228128540	.	C	T	9205.45	PASS	AC=2;AF=1.00;AN=2;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.58;SOR=0.919;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1010,102,0
chr2	228128568	.	G	A	2779.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.271e+00;ClippingRankSum=0.00;DP=439;ExcessHet=6.2839;FS=1.432;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.03;ReadPosRankSum=-6.600e-02;SOR=0.603;set=variant	GT:AD:DP:GQ:PL	0/1:37,30:67:99:592,0,865
chr2	228131169	.	A	G	3356.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.12;ClippingRankSum=0.00;DP=515;ExcessHet=6.2839;FS=3.568;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.11;ReadPosRankSum=-1.700e-02;SOR=0.886;set=variant	GT:AD:DP:GQ:PL	0/1:55,34:89:99:797,0,1272
chr2	228131752	.	G	A	3992.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.656e+00;ClippingRankSum=0.00;DP=563;ExcessHet=6.2839;FS=1.220;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.82;ReadPosRankSum=-4.700e-01;SOR=0.665;set=variant	GT:AD:DP:GQ:PL	0/1:46,54:100:99:1259,0,1258
chr2	228135631	.	C	T	13538.49	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.00;DP=1050;ExcessHet=11.4027;FS=1.138;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=13.03;ReadPosRankSum=-6.140e-01;SOR=0.838;set=variant	GT:AD:DP:GQ:PL	0/1:94,69:163:99:1571,0,2366
chr2	228197238	.	G	A	1419.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-4.300e-02;ClippingRankSum=0.00;DP=545;ExcessHet=3.2736;FS=8.336;MLEAC=2;MLEAF=0.111;MQ=59.93;MQRankSum=0.00;QD=8.40;ReadPosRankSum=1.07;SOR=1.296;set=variant	GT:AD:DP:GQ:PL	0/1:43,39:82:99:971,0,1121
chr2	228560800	.	GA	G	12527.41	PASS	AC=2;AF=1.00;AN=2;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.09;SOR=1.583;set=variant2	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1360,147,0
chr2	230632268	.	G	A	6389.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.691e+00;ClippingRankSum=0.00;DP=599;ExcessHet=3.9991;FS=1.145;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=15.25;ReadPosRankSum=-8.260e-01;SOR=0.566;set=variant	GT:AD:DP:GQ:PL	0/1:39,30:69:99:740,0,1111
chr2	230668858	.	T	C	12367.08	PASS	AC=1;AF=0.556;AN=2;BaseQRankSum=1.27;ClippingRankSum=0.00;DP=702;ExcessHet=1.8603;FS=2.786;MLEAC=10;MLEAF=0.556;MQ=60.02;MQRankSum=0.00;QD=20.11;ReadPosRankSum=0.394;SOR=0.784;set=variant	GT:AD:DP:GQ:PL	0/1:50,58:108:99:1472,0,1145
chr2	230723777	.	G	C	1273.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.874e+00;ClippingRankSum=0.00;DP=200;ExcessHet=4.8226;FS=1.817;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=15.92;ReadPosRankSum=0.190;SOR=0.502;set=variant	GT:AD:DP:GQ:PL	0/1:14,15:29:99:462,0,478
chr2	231050715	.	A	G	12270.45	PASS	AC=2;AF=1.00;AN=2;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.27;SOR=1.308;set=variant	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2608,284,0
chr2	231072709	.	C	T	6803.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-6.550e-01;ClippingRankSum=0.00;DP=298;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.54;ReadPosRankSum=0.533;SOR=0.695;set=variant	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1048,111,0
chr2	231077112	.	G	A	958.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.00;DP=420;ExcessHet=3.8535;FS=2.916;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=5.32;ReadPosRankSum=0.397;SOR=0.490;set=variant	GT:AD:DP:GQ:PL	0/1:57,21:78:99:357,0,1390
chr2	231077154	.	G	A	779.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.00;DP=439;ExcessHet=3.8535;FS=3.887;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=4.06;ReadPosRankSum=-1.700e-02;SOR=0.675;set=variant	GT:AD:DP:GQ:PL	0/1:65,21:86:99:324,0,1546
chr2	231077725	.	A	G	2991.50	PASS	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=26.83;SOR=5.447;set=variant	GT:AD:DP:GQ:PL	1/1:0,15:15:45:581,45,0
chr2	231331896	.	G	A	12490.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-1.920e-01;ClippingRankSum=0.00;DP=703;ExcessHet=0.9154;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=20.54;ReadPosRankSum=-2.267e+00;SOR=0.719;set=variant	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3657,393,0
chr2	231363252	.	TA	T	3991.25	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-2.170e-01;ClippingRankSum=0.00;DP=383;ExcessHet=11.4027;FS=4.083;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=11.84;ReadPosRankSum=0.572;SOR=0.698;set=variant2	GT:AD:DP:GQ:PL	0/1:7,45:57:17:988,0,17
chr2	231406680	.	T	C	6189.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.00;DP=378;ExcessHet=0.9154;FS=4.358;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.53;ReadPosRankSum=-3.030e-01;SOR=0.974;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1548,162,0
chr2	231407663	.	C	T	3332.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.486e+00;ClippingRankSum=0.00;DP=274;ExcessHet=0.9154;FS=2.499;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=20.44;ReadPosRankSum=-5.790e-01;SOR=0.503;set=variant	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1265,126,0
chr2	232952286	.	A	G	2041.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=2.59;ClippingRankSum=0.00;DP=356;ExcessHet=3.8535;FS=2.277;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=15.58;ReadPosRankSum=-5.470e-01;SOR=0.494;set=variant	GT:AD:DP:GQ:PL	0/1:31,26:57:99:755,0,822
chr2	233385396	.	G	A	4462.65	PASS	AC=2;AF=0.889;AN=2;DP=187;ExcessHet=0.1296;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;QD=27.05;SOR=1.104;set=variant	GT:AD:DP:GQ:PL	1/1:0,27:27:81:783,81,0
chr2	233386583	.	T	C	8534.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.57;ClippingRankSum=0.00;DP=872;ExcessHet=8.3924;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.05;ReadPosRankSum=0.073;SOR=0.674;set=variant	GT:AD:DP:GQ:PL	0/1:92,83:175:99:1970,0,2088
chr2	233388813	.	T	G	17513.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=1.08;ClippingRankSum=0.00;DP=672;ExcessHet=3.2736;FS=1.598;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=26.14;ReadPosRankSum=-1.290e-01;SOR=0.715;set=variant	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3998,369,0
chr2	233389918	.	A	G	7997.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=-2.930e-01;ClippingRankSum=0.00;DP=340;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=25.07;ReadPosRankSum=-1.370e-01;SOR=0.739;set=variant	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1426,141,0
chr2	233390937	.	A	G	6523.17	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=-1.530e-01;ClippingRankSum=0.00;DP=373;ExcessHet=6.2839;FS=1.781;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=17.68;ReadPosRankSum=0.190;SOR=0.804;set=variant	GT:AD:DP:GQ:PL	0/1:34,36:70:99:874,0,834
chr2	233396375	.	T	C	683.64	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.11;ClippingRankSum=0.00;DP=152;ExcessHet=3.2736;FS=0.000;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=20.11;ReadPosRankSum=0.851;SOR=0.892;set=variant	GT:AD:DP:GQ:PL	0/1:3,17:20:49:555,0,49
chr2	233400074	.	A	G	7108.17	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.00;DP=292;ExcessHet=6.2839;FS=2.521;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=24.51;ReadPosRankSum=-4.850e-01;SOR=0.890;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1543,132,0
chr2	233400446	.	C	T	1278.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-9.780e-01;ClippingRankSum=0.00;DP=338;ExcessHet=3.2736;FS=1.939;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=13.90;ReadPosRankSum=1.46;SOR=1.051;set=variant	GT:AD:DP:GQ:PL	0/1:31,31:62:99:873,0,888
chr2	233400907	.	T	C	19391.17	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.00;DP=887;ExcessHet=6.2839;FS=2.132;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=21.99;ReadPosRankSum=0.060;SOR=0.900;set=variant	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5509,502,0
chr2	233410294	.	C	T	1498.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-1.086e+00;ClippingRankSum=0.00;DP=410;ExcessHet=3.8535;FS=2.655;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.61;ReadPosRankSum=-9.800e-02;SOR=0.519;set=variant	GT:AD:DP:GQ:PL	0/1:35,39:74:99:853,0,865
chr2	233599904	.	A	C	5315.10	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.00;DP=429;ExcessHet=6.2536;FS=9.393;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=14.40;ReadPosRankSum=-6.780e-01;SOR=0.652;set=variant	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1686,131,0
chr2	233899377	.	C	T	15013.65	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-2.850e-01;ClippingRankSum=0.00;DP=1023;ExcessHet=9.7754;FS=1.783;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=15.72;ReadPosRankSum=0.548;SOR=0.617;set=variant	GT:AD:DP:GQ:PL	1/1:3,194:197:99:5781,507,0
chr2	234255565	.	C	T	554.39	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=1.60;ClippingRankSum=0.00;DP=144;ExcessHet=3.8535;FS=1.164;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=8.94;ReadPosRankSum=0.459;SOR=0.899;set=variant	GT:AD:DP:GQ:PL	0/1:13,12:25:99:310,0,318
chr2	234526871	.	C	G	1363.48	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.00;DP=133;ExcessHet=3.9991;FS=1.793;MLEAC=7;MLEAF=0.389;MQ=58.41;MQRankSum=0.00;QD=14.66;ReadPosRankSum=-1.170e-01;SOR=0.518;set=variant	GT:AD:DP:GQ:PL	0/1:16,7:23:99:213,0,493
chr2	234627937	.	T	C	841.66	PASS	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=10;MLEAF=1.00;MQ=54.38;QD=32.37;SOR=1.220;set=variant	GT:AD:DP:GQ:PL	1/1:0,8:8:24:292,24,0
chr2	238233410	.	C	G	1998.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.76;ClippingRankSum=0.00;DP=267;ExcessHet=2.5097;FS=1.328;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.69;ReadPosRankSum=0.110;SOR=0.569;set=variant	GT:AD:DP:GQ:PL	0/1:26,5:31:99:115,0,778
chr2	238243464	.	C	G	17739.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=1.22;ClippingRankSum=0.00;DP=872;ExcessHet=0.9154;FS=0.710;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=25.31;ReadPosRankSum=-1.100e-02;SOR=0.755;set=variant	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4415,388,0
chr2	238253065	.	C	T	3942.80	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=-6.370e-01;ClippingRankSum=0.00;DP=367;ExcessHet=2.5097;FS=1.148;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=16.71;ReadPosRankSum=-2.400e-01;SOR=0.832;set=variant	GT:AD:DP:GQ:PL	1/1:1,68:69:99:1955,166,0
chr2	238258814	.	C	G	6605.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=1.25;ClippingRankSum=0.00;DP=373;ExcessHet=0.9154;FS=0.524;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=22.02;ReadPosRankSum=0.273;SOR=0.688;set=variant	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1711,168,0
chr2	238267717	.	C	T	2963.15	PASS	AC=2;AF=0.278;AN=2;BaseQRankSum=-2.988e+00;ClippingRankSum=0.00;DP=327;ExcessHet=1.5127;FS=0.000;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=21.63;ReadPosRankSum=0.356;SOR=0.726;set=variant	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1613,156,0
chr2	238277573	.	C	A	10447.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.812e+00;ClippingRankSum=0.00;DP=769;ExcessHet=0.9154;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=16.74;ReadPosRankSum=1.50;SOR=0.667;set=variant	GT:AD:DP:GQ:PL	1/1:1,155:156:99:4675,429,0
chr2	238277795	.	A	G	4678.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=1.79;ClippingRankSum=0.00;DP=334;ExcessHet=0.9154;FS=0.805;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=24.12;ReadPosRankSum=0.778;SOR=0.601;set=variant	GT:AD:DP:GQ:PL	1/1:1,63:64:99:2368,183,0
chr2	238280366	.	C	T	850.88	PASS	AC=2;AF=0.250;AN=2;BaseQRankSum=-1.776e+00;ClippingRankSum=0.00;DP=65;ExcessHet=0.9691;FS=0.000;MLEAC=4;MLEAF=0.250;MQ=57.52;MQRankSum=0.00;QD=25.03;ReadPosRankSum=0.723;SOR=1.127;set=variant	GT:AD:DP:GQ:PL	1/1:0,16:16:48:606,48,0
chr2	238283472	.	T	G	1879.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=2.23;ClippingRankSum=0.00;DP=301;ExcessHet=0.8432;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=20.00;ReadPosRankSum=1.43;SOR=0.668;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1426,132,0
chr2	238287288	.	C	A	2723.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-2.426e+00;ClippingRankSum=0.00;DP=278;ExcessHet=0.8432;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=23.08;ReadPosRankSum=0.950;SOR=0.836;set=variant	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1789,159,0
chr2	238287357	.	C	T	7129.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-1.448e+00;ClippingRankSum=0.00;DP=539;ExcessHet=0.8432;FS=1.123;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=21.80;ReadPosRankSum=1.42;SOR=0.616;set=variant	GT:AD:DP:GQ:PL	1/1:0,172:172:99:5258,517,0
chr2	238419238	.	G	A	921.97	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-5.530e-01;ClippingRankSum=0.00;DP=147;ExcessHet=0.9691;FS=3.466;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=18.08;ReadPosRankSum=1.01;SOR=1.455;set=variant	GT:AD:DP:GQ:PL	0/1:14,9:23:99:261,0,410
chr2	239155053	.	C	T	3638.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=-4.440e-01;ClippingRankSum=0.00;DP=215;ExcessHet=1.8603;FS=1.673;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.78;ReadPosRankSum=0.499;SOR=0.510;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:891,93,0
chr2	239229372	.	C	A	17454.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.102e+00;ClippingRankSum=0.00;DP=628;ExcessHet=3.0103;FS=1.430;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.02;ReadPosRankSum=-1.547e+00;SOR=0.603;set=variant	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2847,279,0
chr2	239237953	.	G	T	971.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726e+00;ClippingRankSum=0.00;DP=104;ExcessHet=3.4788;FS=3.158;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=12.95;ReadPosRankSum=0.00;SOR=0.459;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:3,10:13:84:.:.:247,0,84
chr2	240003870	.	G	A	8423.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.00;DP=410;ExcessHet=0.8432;FS=3.540;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=23.66;ReadPosRankSum=0.343;SOR=0.963;set=variant	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1878,192,0
chr2	240011717	.	T	C	814.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=2.03;ClippingRankSum=0.00;DP=349;ExcessHet=3.2736;FS=0.785;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=8.85;ReadPosRankSum=0.792;SOR=0.821;set=variant	GT:AD:DP:GQ:PL	0/1:35,28:63:99:580,0,784
chr2	240029736	.	T	C	33806.45	PASS	AC=2;AF=1.00;AN=2;DP=1152;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.63;SOR=0.980;set=variant	GT:AD:DP:GQ:PL	1/1:0,158:158:99:4934,474,0
chr2	240900607	.	TG	T	3580.76	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.00;DP=389;ExcessHet=2.5097;FS=1.059;MLEAC=6;MLEAF=0.333;MQ=60.05;MQRankSum=0.00;QD=16.13;ReadPosRankSum=0.684;SOR=0.794;set=variant2	GT:AD:DP:GQ:PL	0/1:21,33:54:99:892,0,501
chr2	240946766	.	T	C	11102.47	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=2.14;ClippingRankSum=0.00;DP=794;ExcessHet=3.9991;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=16.33;ReadPosRankSum=0.761;SOR=0.682;set=variant	GT:AD:DP:GQ:PL	0/1:64,51:115:99:1375,0,1525
chr2	240961728	.	T	C	1915.37	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=1.62;ClippingRankSum=0.00;DP=105;ExcessHet=2.5097;FS=3.925;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=22.27;ReadPosRankSum=-7.660e-01;SOR=0.315;set=variant	GT:AD:DP:GQ:PL	0/1:5,5:10:99:140,0,153
chr2	241537421	.	G	A	8635.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-01;ClippingRankSum=0.00;DP=561;ExcessHet=0.7786;FS=0.000;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=19.32;ReadPosRankSum=1.07;SOR=0.705;set=variant	GT:AD:DP:GQ:PL	0/1:49,53:102:99:1240,0,1107
chr2	241538074	.	A	G	15390.45	PASS	AC=2;AF=1.00;AN=2;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.93;SOR=0.771;set=variant	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2372,249,0
chr2	241664801	.	C	T	6870.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=1.49;ClippingRankSum=0.00;DP=1221;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.47;ReadPosRankSum=-3.510e-01;SOR=0.675;set=variant	GT:AD:DP:GQ:PL	0/1:94,74:168:99:1780,0,2334
chr2	241680802	.	G	A	4759.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.00;ClippingRankSum=0.00;DP=323;ExcessHet=1.8603;FS=1.879;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=20.34;ReadPosRankSum=1.23;SOR=0.873;set=variant	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1318,126,0
chr2	241817516	.	A	G	1500.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.00;DP=677;ExcessHet=3.0103;FS=3.045;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=10.80;ReadPosRankSum=1.20;SOR=0.999;set=variant	GT:AD:DP:GQ:PL	0/1:73,66:139:99:1535,0,1659
chr2	242046785	.	A	C	1746.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.19;ClippingRankSum=0.00;DP=297;ExcessHet=8.3924;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=9.05;ReadPosRankSum=1.17;SOR=0.690;set=variant	GT:AD:DP:GQ:PL	0/1:24,25:49:99:573,0,563
chr2	242051777	.	G	A	2868.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.08;ClippingRankSum=0.00;DP=373;ExcessHet=8.3924;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=10.59;ReadPosRankSum=0.151;SOR=0.689;set=variant	GT:AD:DP:GQ:PL	0/1:24,28:52:99:665,0,507
chr2	242054403	.	G	A	1971.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.00;DP=256;ExcessHet=8.3924;FS=2.782;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.60;ReadPosRankSum=0.575;SOR=0.487;set=variant	GT:AD:DP:GQ:PL	0/1:18,21:39:99:588,0,411
chr2	242062162	.	C	T	4119.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-6.880e-01;ClippingRankSum=0.00;DP=486;ExcessHet=8.3924;FS=0.000;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.48;ReadPosRankSum=0.746;SOR=0.699;set=variant	GT:AD:DP:GQ:PL	0/1:44,49:93:99:1132,0,1044
chr2	242063448	.	G	A	1258.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.230e-01;ClippingRankSum=0.00;DP=416;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.04;ReadPosRankSum=0.390;SOR=0.842;set=variant	GT:AD:DP:GQ:PL	0/1:55,59:114:99:1293,0,1192
chr2	242065624	.	A	G	968.37	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-9.680e-01;ClippingRankSum=0.00;DP=239;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=9.88;ReadPosRankSum=-1.390e-01;SOR=0.815;set=variant	GT:AD:DP:GQ:PL	0/1:29,14:43:99:352,0,821
chr2	242066314	.	T	C	3731.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.37;ClippingRankSum=0.00;DP=327;ExcessHet=2.5097;FS=0.588;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=19.96;ReadPosRankSum=-8.400e-02;SOR=0.644;set=variant	GT:AD:DP:GQ:PL	0/1:27,27:54:99:784,0,772
chr2	242066830	.	G	A	1539.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.276e+00;ClippingRankSum=0.00;DP=504;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.76;ReadPosRankSum=1.79;SOR=0.552;set=variant	GT:AD:DP:GQ:PL	0/1:66,65:131:99:1574,0,1744
chr2	242072280	.	G	A	1352.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-7.130e-01;ClippingRankSum=0.00;DP=165;ExcessHet=2.5097;FS=2.050;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=15.92;ReadPosRankSum=1.28;SOR=0.450;set=variant	GT:AD:DP:GQ:PL	0/1:8,14:22:99:402,0,191
chr2	242077496	.	C	T	2333.78	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=2.14;ClippingRankSum=0.00;DP=297;ExcessHet=0.3904;FS=5.017;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=19.29;ReadPosRankSum=1.43;SOR=0.336;set=variant	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1270,120,0
chr2	242082262	.	T	C	10331.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-1.003e+00;ClippingRankSum=0.00;DP=455;ExcessHet=3.8535;FS=0.708;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.70;ReadPosRankSum=-4.120e-01;SOR=0.620;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1764,162,0
chr2	242141719	.	C	T	5209.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=1.39;ClippingRankSum=0.00;DP=815;ExcessHet=1.5127;FS=2.311;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=14.00;ReadPosRankSum=0.261;SOR=0.578;set=variant	GT:AD:DP:GQ:PL	0/1:64,57:121:99:1402,0,1633
chr2	242142737	.	T	C	15000.45	PASS	AC=2;AF=1.00;AN=2;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.30;SOR=1.188;set=variant	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2214,210,0
chr2	242157241	.	G	A	629.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.193e+00;ClippingRankSum=0.00;DP=434;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=6.85;ReadPosRankSum=0.511;SOR=1.037;set=variant	GT:AD:DP:GQ:PL	0/1:61,31:92:99:664,0,1758
chr2	242176019	.	T	C	182.52	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=1.26;ClippingRankSum=0.00;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=16.59;ReadPosRankSum=-1.616e+00;SOR=0.399;set=variant	GT:AD:DP:GQ:PL	0/1:4,7:11:99:215,0,109
chr2	242203916	.	A	C	24031.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;ClippingRankSum=0.00;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=28.78;ReadPosRankSum=-9.160e-01;SOR=0.700;set=variant	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3444,339,0
chr2	242793273	.	A	G	13817.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=1.23;ClippingRankSum=0.00;DP=698;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=19.97;ReadPosRankSum=0.166;SOR=0.701;set=variant	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2814,285,0
chr3	361508	.	C	T	2044.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.00;DP=361;ExcessHet=2.5097;FS=1.786;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=10.71;ReadPosRankSum=1.20;SOR=0.823;set=variant	GT:AD:DP:GQ:PL	0/1:34,18:52:99:395,0,926
chr3	391100	.	A	G	25130.45	PASS	AC=2;AF=1.00;AN=2;DP=788;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.10;SOR=1.058;set=variant	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4123,366,0
chr3	439963	.	A	G	17133.45	PASS	AC=2;AF=1.00;AN=2;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.27;SOR=0.998;set=variant	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3027,291,0
chr3	440028	.	T	C	20665.45	PASS	AC=2;AF=1.00;AN=2;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.08;SOR=0.947;set=variant	GT:AD:DP:GQ:PL	1/1:0,139:139:99:3842,417,0
chr3	3076401	.	C	T	8412.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.859e+00;ClippingRankSum=0.00;DP=779;ExcessHet=0.9154;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=19.43;ReadPosRankSum=0.238;SOR=0.744;set=variant	GT:AD:DP:GQ:PL	1/1:1,134:135:99:3872,364,0
chr3	3076443	.	A	G	11499.61	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.00;DP=812;ExcessHet=0.7786;FS=1.284;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=20.54;ReadPosRankSum=-4.200e-02;SOR=0.597;set=variant	GT:AD:DP:GQ:PL	1/1:2,145:147:99:4319,371,0
chr3	3081750	.	A	T	2518.78	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.00;DP=165;ExcessHet=3.4788;FS=3.660;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=17.86;ReadPosRankSum=-5.700e-02;SOR=0.405;set=variant	GT:AD:DP:GQ:PL	1/1:0,33:33:99:972,99,0
chr3	3081825	.	T	C	11613.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-4.350e-01;ClippingRankSum=0.00;DP=509;ExcessHet=3.8535;FS=1.541;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=23.09;ReadPosRankSum=-1.970e-01;SOR=0.656;set=variant	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2198,228,0
chr3	3215954	.	A	G	2408.13	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.00;DP=73;ExcessHet=3.0103;FS=4.555;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=34.40;ReadPosRankSum=-1.006e+00;SOR=2.995;set=variant	GT:AD:DP:GQ:PL	1/1:0,16:16:48:590,48,0
chr3	4403817	.	T	A	4672.49	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-3.610e-01;ClippingRankSum=0.00;DP=272;ExcessHet=11.4027;FS=2.063;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=17.18;ReadPosRankSum=0.336;SOR=0.568;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:33,12:45:99:0|1:4403817_T_A:436,0,1597
chr3	4403818	.	T	C	3171.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.33;ClippingRankSum=0.00;DP=276;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=17.24;ReadPosRankSum=0.412;SOR=0.726;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:33,13:46:99:0|1:4403817_T_A:436,0,1597
chr3	4403837	.	A	G	5390.49	PASS	AC=1;AF=0.611;AN=2;BaseQRankSum=-8.100e-02;ClippingRankSum=0.00;DP=377;ExcessHet=11.4027;FS=0.000;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=15.14;ReadPosRankSum=-6.270e-01;SOR=0.714;set=variant	GT:AD:DP:GQ:PL	0/1:31,25:56:99:587,0,675
chr3	4508742	.	C	T	5252.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-2.380e+00;ClippingRankSum=0.00;DP=550;ExcessHet=1.5127;FS=10.466;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=15.40;ReadPosRankSum=-6.560e-01;SOR=0.376;set=variant	GT:AD:DP:GQ:PL	0/1:43,42:85:99:989,0,1146
chr3	4712413	.	G	A	15976.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-1.954e+00;ClippingRankSum=0.00;DP=669;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.06;ReadPosRankSum=0.187;SOR=0.645;set=variant	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2634,255,0
chr3	4716811	.	A	C	3618.45	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=1.19;ClippingRankSum=0.00;DP=252;ExcessHet=0.9154;FS=0.618;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=19.88;ReadPosRankSum=1.02;SOR=0.595;set=variant	GT:AD:DP:GQ:PL	1/1:0,28:28:84:848,84,0
chr3	4767262	.	T	C	5837.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.00;DP=268;ExcessHet=3.8535;FS=1.953;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=22.28;ReadPosRankSum=-2.600e-02;SOR=0.876;set=variant	GT:AD:DP:GQ:PL	1/1:0,23:23:69:668,69,0
chr3	4817057	.	T	C	6124.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.00;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.86;ReadPosRankSum=0.805;SOR=0.813;set=variant	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1286,126,0
chr3	4829732	.	A	G	1699.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.00;DP=296;ExcessHet=6.2839;FS=0.580;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=10.49;ReadPosRankSum=-5.350e-01;SOR=0.607;set=variant	GT:AD:DP:GQ:PL	0/1:16,19:35:99:424,0,386
chr3	4842231	.	C	T	6623.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-5.290e-01;ClippingRankSum=0.00;DP=720;ExcessHet=3.9991;FS=2.452;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=11.52;ReadPosRankSum=0.575;SOR=0.877;set=variant	GT:AD:DP:GQ:PL	0/1:65,59:124:99:1375,0,1784
chr3	4856180	.	T	C	4195.15	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=1.19;ClippingRankSum=0.00;DP=262;ExcessHet=1.5127;FS=1.143;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=18.81;ReadPosRankSum=0.298;SOR=0.635;set=variant	GT:AD:DP:GQ:PL	0/1:25,12:37:99:259,0,570
chr3	4856234	.	G	A	941.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-02;ClippingRankSum=0.00;DP=97;ExcessHet=0.7786;FS=3.419;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=14.27;ReadPosRankSum=-2.369e+00;SOR=1.052;set=variant	GT:AD:DP:GQ:PL	0/1:19,5:24:81:81,0,414
chr3	6903601	.	A	G	14337.45	PASS	AC=2;AF=1.00;AN=2;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=34.55;SOR=2.379;set=variant	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2268,189,0
chr3	7620168	.	A	G	2979.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=2.39;ClippingRankSum=0.00;DP=443;ExcessHet=4.8226;FS=0.507;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=13.42;ReadPosRankSum=-9.990e-01;SOR=0.638;set=variant	GT:AD:DP:GQ:PL	0/1:45,29:74:99:739,0,1171
chr3	7620382	.	C	T	5488.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.646e+00;ClippingRankSum=0.00;DP=650;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=12.98;ReadPosRankSum=0.821;SOR=0.681;set=variant	GT:AD:DP:GQ:PL	0/1:64,89:153:99:2294,0,1669
chr3	7620789	.	T	C	5589.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.74;ClippingRankSum=0.00;DP=500;ExcessHet=6.2536;FS=1.742;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.03;ReadPosRankSum=0.195;SOR=0.576;set=variant	GT:AD:DP:GQ:PL	0/1:42,55:97:99:1483,0,1027
chr3	7620828	.	G	A	2242.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=-1.686e+00;ClippingRankSum=0.00;DP=361;ExcessHet=4.8226;FS=3.508;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=13.11;ReadPosRankSum=-4.400e-01;SOR=0.746;set=variant	GT:AD:DP:GQ:PL	0/1:36,48:84:99:1314,0,970
chr3	8775661	.	C	T	2225.08	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.00;DP=314;ExcessHet=1.8603;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=11.13;ReadPosRankSum=0.949;SOR=0.657;set=variant	GT:AD:DP:GQ:PL	0/1:33,15:48:99:259,0,803
chr3	8809222	.	C	T	3239.07	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.00;DP=204;ExcessHet=0.2709;FS=2.075;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=24.17;ReadPosRankSum=0.433;SOR=1.073;set=variant	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1042,99,0
chr3	9798773	.	C	G	10167.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.00;DP=825;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=14.06;ReadPosRankSum=-5.200e-01;SOR=0.664;set=variant	GT:AD:DP:GQ:PL	0/1:73,72:145:99:1787,0,1770
chr3	9918861	.	C	A	8058.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-1.086e+00;ClippingRankSum=0.00;DP=757;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.00;ReadPosRankSum=0.708;SOR=0.723;set=variant	GT:AD:DP:GQ:PL	0/1:63,85:148:99:1894,0,1416
chr3	9976159	.	A	G	17292.45	PASS	AC=2;AF=1.00;AN=2;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=31.10;SOR=1.276;set=variant	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2311,204,0
chr3	10328453	.	T	A	7070.06	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.00;DP=449;ExcessHet=0.2709;FS=2.313;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=21.17;ReadPosRankSum=1.15;SOR=0.654;set=variant	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2145,225,0
chr3	10379923	.	C	T	4530.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.00;DP=219;ExcessHet=0.8432;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=24.23;ReadPosRankSum=0.036;SOR=0.646;set=variant	GT:AD:DP:GQ:PL	1/1:0,24:24:72:798,72,0
chr3	10387059	.	C	A	1175.71	PASS	AC=2;AF=0.563;AN=2;BaseQRankSum=-7.320e-01;ClippingRankSum=0.00;DP=73;ExcessHet=0.1076;FS=3.327;MLEAC=9;MLEAF=0.563;MQ=57.45;MQRankSum=0.00;QD=27.34;ReadPosRankSum=1.18;SOR=2.252;set=variant	GT:AD:DP:GQ:PL	1/1:0,15:15:45:513,45,0
chr3	10413715	.	G	A	755.65	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.00;DP=144;ExcessHet=4.8226;FS=2.039;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=10.79;ReadPosRankSum=1.19;SOR=0.443;set=variant	GT:AD:DP:GQ:PL	0/1:17,16:33:99:402,0,386
chr3	10420087	.	T	C	1605.17	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.13;ClippingRankSum=0.00;DP=136;ExcessHet=2.9800;FS=1.034;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=19.58;ReadPosRankSum=0.135;SOR=0.895;set=variant	GT:AD:DP:GQ:PL	0/1:15,12:27:99:347,0,370
chr3	12393125	.	C	G	811.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=-6.100e-02;ClippingRankSum=0.00;DP=282;ExcessHet=3.2736;FS=2.328;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=14.24;ReadPosRankSum=0.876;SOR=1.148;set=variant	GT:AD:DP:GQ:PL	0/1:16,24:40:99:607,0,367
chr3	12475557	.	C	T	1602.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-2.300e-01;ClippingRankSum=0.00;DP=471;ExcessHet=3.8535;FS=3.869;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=6.62;ReadPosRankSum=0.659;SOR=0.964;set=variant	GT:AD:DP:GQ:PL	0/1:61,43:104:99:908,0,1462
chr3	13896140	.	A	G	9297.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.00;DP=948;ExcessHet=8.3924;FS=1.103;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=11.44;ReadPosRankSum=0.214;SOR=0.808;set=variant	GT:AD:DP:GQ:PL	0/1:95,87:182:99:2116,0,2637
chr3	13896200	.	G	A	1775.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-2.258e+00;ClippingRankSum=0.00;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.46;ReadPosRankSum=-5.700e-02;SOR=0.651;set=variant	GT:AD:DP:GQ:PL	0/1:81,74:155:99:1810,0,2190
chr3	13896284	.	C	T	3675.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=1.52;ClippingRankSum=0.00;DP=514;ExcessHet=8.3924;FS=0.834;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=9.70;ReadPosRankSum=0.582;SOR=0.633;set=variant	GT:AD:DP:GQ:PL	0/1:53,41:94:99:1003,0,1382
chr3	14174427	.	A	T	3547.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.00;DP=703;ExcessHet=6.2839;FS=0.530;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=8.04;ReadPosRankSum=-4.710e-01;SOR=0.656;set=variant	GT:AD:DP:GQ:PL	0/1:68,55:123:99:1183,0,1585
chr3	14175262	.	T	C	5430.78	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-1.171e+00;ClippingRankSum=0.00;DP=333;ExcessHet=0.3904;FS=1.859;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=20.65;ReadPosRankSum=0.207;SOR=0.636;set=variant	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1257,132,0
chr3	14186757	.	C	G	5212.37	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.00;DP=208;ExcessHet=3.8535;FS=5.960;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=25.80;ReadPosRankSum=0.155;SOR=1.228;set=variant	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1166,102,0
chr3	14187449	.	G	T	5300.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=-1.664e+00;ClippingRankSum=0.00;DP=251;ExcessHet=2.5097;FS=4.406;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=24.65;ReadPosRankSum=-1.018e+00;SOR=1.213;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1265,108,0
chr3	14190237	.	T	G	11104.80	PASS	AC=2;AF=0.667;AN=2;BaseQRankSum=2.24;ClippingRankSum=0.00;DP=528;ExcessHet=2.5097;FS=1.438;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=25.24;ReadPosRankSum=0.456;SOR=0.854;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,80:80:99:.:.:2732,240,0
chr3	14193889	.	C	T	726.36	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-4.580e-01;ClippingRankSum=0.00;DP=303;ExcessHet=3.8535;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=7.19;ReadPosRankSum=-9.700e-01;SOR=0.759;set=variant	GT:AD:DP:GQ:PL	0/1:30,22:52:99:432,0,680
chr3	14197987	.	A	T	21841.45	PASS	AC=2;AF=1.00;AN=2;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.20;SOR=0.715;set=variant	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3362,336,0
chr3	14220023	.	G	C	3879.82	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=-1.055e+00;ClippingRankSum=0.00;DP=407;ExcessHet=8.3924;FS=2.220;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=13.76;ReadPosRankSum=1.08;SOR=0.554;set=variant	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1351,0,1025
chr3	14220095	.	C	G	3372.63	PASS	AC=1;AF=0.222;AN=2;BaseQRankSum=2.04;ClippingRankSum=0.00;DP=579;ExcessHet=4.8226;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=9.04;ReadPosRankSum=1.26;SOR=0.671;set=variant	GT:AD:DP:GQ:PL	0/1:78,58:136:99:1394,0,1787
chr3	16633664	.	C	T	1844.45	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-1.220e+00;ClippingRankSum=0.00;DP=213;ExcessHet=0.9154;FS=5.032;MLEAC=7;MLEAF=0.389;MQ=59.68;MQRankSum=0.00;QD=16.77;ReadPosRankSum=-6.290e-01;SOR=0.718;set=variant	GT:AD:DP:GQ:PL	1/1:0,24:24:72:737,72,0
chr3	16636093	.	TA	T	561.82	PASS	AC=1;AF=0.313;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.00;DP=147;ExcessHet=5.1594;FS=6.212;MLEAC=5;MLEAF=0.313;MQ=57.48;MQRankSum=0.00;QD=11.24;ReadPosRankSum=1.59;SOR=0.158;set=variant2	GT:AD:DP:GQ:PL	0/1:8,3:15:24:24,0,225
chr3	27763427	.	G	GCGGCGC,GCGC	4755.34	PASS	AC=2,0;AF=0.722,0.111;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.00;DP=140;ExcessHet=3.8535;FS=4.459;MLEAC=13,2;MLEAF=0.722,0.111;MQ=60.31;MQRankSum=0.00;QD=34.21;ReadPosRankSum=0.655;SOR=1.251;set=variant2	GT:AD:DP:GQ:PL	1/1:0,24,0:24:72:1076,72,0,1076,72,1076
chr3	30686414	.	A	G	1655.85	PASS	AC=2;AF=0.333;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.00;DP=118;ExcessHet=2.5097;FS=1.748;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=24.35;ReadPosRankSum=-2.400e-01;SOR=0.363;set=variant	GT:AD:DP:GQ:PL	1/1:0,20:20:60:776,60,0
chr3	30713126	.	T	A	2962.08	PASS	AC=2;AF=0.556;AN=2;BaseQRankSum=2.43;ClippingRankSum=0.00;DP=158;ExcessHet=1.8603;FS=1.688;MLEAC=10;MLEAF=0.556;MQ=60.00;MQRankSum=0.00;QD=24.68;ReadPosRankSum=0.302;SOR=0.430;set=variant	GT:AD:DP:GQ:PL	1/1:0,22:22:66:794,66,0
chr3	33055721	.	A	G	5578.45	PASS	AC=2;AF=1.00;AN=2;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.82;SOR=1.421;set=variant	GT:AD:DP:GQ:PL	1/1:0,31:31:93:947,93,0
chr3	33138544	.	A	G	7279.91	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.00;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=32.50;ReadPosRankSum=-4.410e-01;SOR=0.642;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,21:21:63:1|1:33138544_A_G:904,63,0
chr3	33138549	.	G	A	3472.47	PASS	AC=2;AF=0.611;AN=2;BaseQRankSum=-1.035e+00;ClippingRankSum=0.00;DP=223;ExcessHet=3.9991;FS=0.544;MLEAC=11;MLEAF=0.611;MQ=60.00;MQRankSum=0.00;QD=18.77;ReadPosRankSum=0.756;SOR=0.763;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,20:20:60:1|1:33138544_A_G:888,60,0
chr3	37535984	.	C	G	3977.37	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=-1.517e+00;ClippingRankSum=0.00;DP=224;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=17.84;ReadPosRankSum=0.763;SOR=0.668;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:981,96,0
chr3	37574951	.	G	A	10658.61	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.00;DP=499;ExcessHet=0.8432;FS=1.834;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=23.90;ReadPosRankSum=-2.830e-01;SOR=0.649;set=variant	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2371,249,0
chr3	38052725	.	C	T	320.83	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=-3.893e+00;ClippingRankSum=0.00;DP=192;ExcessHet=3.2451;FS=5.421;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=8.91;ReadPosRankSum=-1.504e+00;SOR=0.091;set=variant	GT:AD:DP:GQ:PL	0/1:21,15:36:99:354,0,692
chr3	38347633	.	G	A	6034.12	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-5.020e-01;ClippingRankSum=0.00;DP=636;ExcessHet=15.7960;FS=0.520;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=10.42;ReadPosRankSum=0.139;SOR=0.730;set=variant	GT:AD:DP:GQ:PL	0/1:61,63:124:99:1466,0,1507
chr3	38347851	.	A	G	10354.12	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-8.200e-02;ClippingRankSum=0.00;DP=899;ExcessHet=15.7960;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=12.49;ReadPosRankSum=-7.900e-02;SOR=0.672;set=variant	GT:AD:DP:GQ:PL	0/1:69,61:130:99:1547,0,1886
chr3	38350479	.	T	C	5457.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.00;DP=615;ExcessHet=6.2536;FS=1.790;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=9.98;ReadPosRankSum=1.61;SOR=0.843;set=variant	GT:AD:DP:GQ:PL	0/1:73,41:114:99:912,0,1726
chr3	38350519	.	G	A	8408.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-9.200e-01;ClippingRankSum=0.00;DP=952;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=9.50;ReadPosRankSum=-4.400e-01;SOR=0.682;set=variant	GT:AD:DP:GQ:PL	0/1:122,69:191:99:1360,0,2878
chr3	38350543	.	A	G	10062.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-2.080e-01;ClippingRankSum=0.00;DP=1061;ExcessHet=6.2536;FS=0.522;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=10.27;ReadPosRankSum=0.601;SOR=0.748;set=variant	GT:AD:DP:GQ:PL	0/1:129,69:198:99:1307,0,3131
chr3	38355225	.	G	A	8831.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.00;DP=684;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=-5.520e-01;SOR=0.663;set=variant	GT:AD:DP:GQ:PL	0/1:58,77:135:99:1926,0,1375
chr3	38357817	.	C	T	3292.15	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-1.798e+00;ClippingRankSum=0.00;DP=521;ExcessHet=1.5127;FS=3.074;MLEAC=5;MLEAF=0.278;MQ=60.00;MQRankSum=0.00;QD=13.33;ReadPosRankSum=-4.900e-02;SOR=0.505;set=variant	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1112,0,1315
chr3	38357961	.	C	G	7493.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=2.18;ClippingRankSum=0.00;DP=802;ExcessHet=2.5097;FS=2.553;MLEAC=6;MLEAF=0.333;MQ=60.00;MQRankSum=0.00;QD=12.43;ReadPosRankSum=0.776;SOR=0.878;set=variant	GT:AD:DP:GQ:PL	0/1:92,67:159:99:1653,0,2181
chr3	38519424	.	A	G	2812.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=1.59;ClippingRankSum=0.00;DP=249;ExcessHet=6.2536;FS=4.867;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=13.78;ReadPosRankSum=-4.000e-01;SOR=1.015;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:20,19:39:99:.:.:466,0,420
chr3	38592406	.	A	G	2793.10	PASS	AC=1;AF=0.444;AN=2;BaseQRankSum=-1.326e+00;ClippingRankSum=0.00;DP=236;ExcessHet=6.2536;FS=0.000;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=15.35;ReadPosRankSum=-3.690e-01;SOR=0.697;set=variant	GT:AD:DP:GQ:PL	0/1:25,20:45:99:460,0,645
chr3	38622467	.	T	C	7236.45	PASS	AC=2;AF=1.00;AN=2;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.02;SOR=2.024;set=variant	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1103,96,0
chr3	38674712	.	T	C	13965.82	PASS	AC=1;AF=0.667;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.00;DP=741;ExcessHet=8.3924;FS=1.848;MLEAC=12;MLEAF=0.667;MQ=60.00;MQRankSum=0.00;QD=19.13;ReadPosRankSum=-5.580e-01;SOR=0.840;set=variant	GT:AD:DP:GQ:PL	0/1:65,51:116:99:1233,0,1759
chr3	38739574	.	T	C	3236.46	PASS	AC=2;AF=1.00;AN=2;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=59.16;QD=28.90;SOR=1.109;set=variant	GT:AD:DP:GQ:PL	1/1:0,23:23:69:656,69,0
chr3	38739845	.	A	G	2094.49	PASS	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=14;MLEAF=1.00;MQ=59.12;QD=31.26;SOR=0.990;set=variant	GT:AD:DP:GQ:PL	1/1:0,20:20:60:613,60,0
chr3	38748833	.	T	C	2632.17	PASS	AC=1;AF=0.278;AN=2;BaseQRankSum=-3.800e-02;ClippingRankSum=0.00;DP=487;ExcessHet=6.2839;FS=0.878;MLEAC=5;MLEAF=0.278;MQ=59.06;MQRankSum=-1.819e+00;QD=8.60;ReadPosRankSum=0.472;SOR=0.769;set=variant	GT:AD:DP:GQ:PL	0/1:48,29:77:99:561,0,1062
chr3	38766675	.	A	G	13161.13	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=2.99;ClippingRankSum=0.00;DP=615;ExcessHet=0.1296;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=26.38;ReadPosRankSum=0.177;SOR=0.622;set=variant	GT:AD:DP:GQ:PL	0/1:67,49:116:99:1266,0,1602
chr3	38768334	.	T	C	1470.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=4.02;ClippingRankSum=0.00;DP=373;ExcessHet=3.2736;FS=3.637;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=14.28;ReadPosRankSum=0.181;SOR=0.859;set=variant	GT:AD:DP:GQ:PL	0/1:33,34:67:99:1049,0,851
chr3	38784029	.	T	C	7031.13	PASS	AC=1;AF=0.722;AN=2;BaseQRankSum=1.18;ClippingRankSum=0.00;DP=323;ExcessHet=0.1296;FS=0.000;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=28.58;ReadPosRankSum=-2.791e+00;SOR=0.629;set=variant	GT:AD:DP:GQ:PL	0/1:18,25:43:99:674,0,395
chr3	39323163	.	A	C	5749.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.00;DP=670;ExcessHet=11.4027;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=10.29;ReadPosRankSum=0.335;SOR=0.660;set=variant	GT:AD:DP:GQ:PL	0/1:52,30:82:99:618,0,1162
chr3	39431081	.	G	A	4802.63	PASS	AC=2;AF=0.500;AN=2;BaseQRankSum=-1.289e+00;ClippingRankSum=0.00;DP=381;ExcessHet=3.4788;FS=3.486;MLEAC=9;MLEAF=0.500;MQ=57.83;MQRankSum=-1.523e+00;QD=16.23;ReadPosRankSum=-9.620e-01;SOR=0.498;set=variant	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1499,165,0
chr3	41280827	.	C	T	438.32	PASS	AC=1;AF=0.167;AN=2;BaseQRankSum=-4.740e-01;ClippingRankSum=0.00;DP=122;ExcessHet=4.5998;FS=0.000;MLEAC=3;MLEAF=0.167;MQ=60.00;MQRankSum=0.00;QD=7.56;ReadPosRankSum=-3.450e-01;SOR=0.743;set=variant	GT:AD:DP:GQ:PL	0/1:7,10:17:99:259,0,203
chr3	42305131	.	C	G	13146.63	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=2.64;ClippingRankSum=0.00;DP=565;ExcessHet=4.8226;FS=0.000;MLEAC=14;MLEAF=0.778;MQ=60.00;MQRankSum=0.00;QD=23.86;ReadPosRankSum=0.00;SOR=0.775;set=variant	GT:AD:DP:GQ:PL	1/1:2,77:79:99:2684,188,0
chr3	43121559	.	C	T	2506.93	PASS	AC=1;AF=0.778;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.00;DP=123;ExcessHet=3.3099;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.80;ReadPosRankSum=-3.730e-01;SOR=0.780;set=variant	GT:AD:DP:GQ:PL	0/1:11,7:18:99:171,0,282
chr3	43414318	.	A	G	13086.45	PASS	AC=2;AF=1.00;AN=2;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.88;SOR=1.218;set=variant	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1980,195,0
chr3	43602803	.	C	T	5924.36	PASS	AC=2;AF=0.833;AN=2;BaseQRankSum=1.02;ClippingRankSum=0.00;DP=266;ExcessHet=3.8535;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=24.18;ReadPosRankSum=-1.700e-02;SOR=0.725;set=variant	GT:AD:DP:GQ:PL	1/1:0,30:30:90:863,90,0
chr3	43607136	.	T	C	2142.04	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=2.88;ClippingRankSum=0.00;DP=81;ExcessHet=1.3263;FS=0.000;MLEAC=15;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=29.75;ReadPosRankSum=0.00;SOR=0.941;set=variant	GT:AD:DP:GQ:PL	1/1:0,15:15:45:521,45,0
chr3	45436102	.	T	C	905.91	PASS	AC=1;AF=0.056;AN=2;BaseQRankSum=2.21;ClippingRankSum=0.00;DP=446;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.056;MQ=60.00;MQRankSum=0.00;QD=11.61;ReadPosRankSum=1.11;SOR=0.804;set=variant	GT:AD:DP:GQ:PL	0/1:42,36:78:99:940,0,1003
chr3	45527218	.	T	C	9469.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;ClippingRankSum=0.00;DP=326;ExcessHet=3.0103;FS=3.879;MLEAC=18;MLEAF=1.00;MQ=60.00;MQRankSum=0.00;QD=29.59;ReadPosRankSum=1.63;SOR=0.856;set=variant	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1517,150,0
chr3	45533224	.	G	A	17327.45	PASS	AC=2;AF=1.00;AN=2;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=27.59;SOR=0.700;set=variant	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2428,264,0
chr3	45559519	.	T	C	32917.45	PASS	AC=2;AF=1.00;AN=2;DP=1144;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.00;SOR=1.000;set=variant	GT:AD:DP:GQ:PL	1/1:0,193:193:99:5764,579,0
chr3	45565554	.	A	G	12863.45	PASS	AC=2;AF=1.00;AN=2;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.34;SOR=1.004;set=variant	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1946,174,0
chr3	45817418	.	A	G	18681.91	PASS	AC=1;AF=0.944;AN=2;BaseQRankSum=1.10;ClippingRankSum=0.00;DP=721;ExcessHet=3.0103;FS=0.000;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=26.54;ReadPosRankSum=1.60;SOR=0.571;set=variant	GT:AD:DP:GQ:PL	0/1:53,67:120:99:1643,0,1155
chr3	45972728	.	C	T	1270.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=1.23;ClippingRankSum=0.00;DP=314;ExcessHet=3.2736;FS=0.709;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=11.05;ReadPosRankSum=0.488;SOR=0.571;set=variant	GT:AD:DP:GQ:PL	0/1:37,39:76:99:898,0,903
chr3	45996761	.	G	A	13215.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=2.62;ClippingRankSum=0.00;DP=577;ExcessHet=3.2736;FS=0.861;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=23.68;ReadPosRankSum=-2.650e-01;SOR=0.790;set=variant	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1755,186,0
chr3	46008790	.	G	A	12017.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.00;DP=572;ExcessHet=1.5127;FS=1.416;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=22.76;ReadPosRankSum=0.317;SOR=0.906;set=variant	GT:AD:DP:GQ:PGT:PID:PL	1/1:0,86:86:99:.:.:2691,258,0
chr3	46009864	.	C	G	11512.15	PASS	AC=2;AF=0.722;AN=2;BaseQRankSum=-4.530e-01;ClippingRankSum=0.00;DP=423;ExcessHet=1.5127;FS=1.238;MLEAC=13;MLEAF=0.722;MQ=60.00;MQRankSum=0.00;QD=30.30;ReadPosRankSum=1.18;SOR=0.844;set=variant	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2934,235,0
chr3	46010077	.	C	T	29092.45	PASS	AC=2;AF=1.00;AN=2;DP=1046;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=29.42;SOR=0.762;set=variant	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4892,480,0
chr3	46021218	.	G	T	9959.45	PASS	AC=2;AF=1.00;AN=2;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=28.37;SOR=0.757;set=variant	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1591,162,0
chr3	46399208	.	G	A	2519.80	PASS	AC=1;AF=0.333;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.00;DP=329;ExcessHet=2.5097;FS=6.441;MLEAC=6;MLEAF=0.333;MQ=59.82;MQRankSum=0.00;QD=13.85;ReadPosRankSum=0.277;SOR=1.152;set=variant	GT:AD:DP:GQ:PL	0/1:23,23:46:99:659,0,562
chr3	46399798	.	T	C	4393.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=2.17;ClippingRankSum=0.00;DP=394;ExcessHet=11.4027;FS=3.151;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=14.60;ReadPosRankSum=0.332;SOR=0.871;set=variant	GT:AD:DP:GQ:PL	0/1:32,45:77:99:1377,0,799
chr3	46449978	.	A	C	8014.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.00;DP=721;ExcessHet=3.9991;FS=1.108;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=-5.860e-01;SOR=0.598;set=variant	GT:AD:DP:GQ:PL	0/1:97,75:172:99:1898,0,2475
chr3	46450070	.	T	A	4726.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-2.286e+00;ClippingRankSum=0.00;DP=472;ExcessHet=3.9991;FS=5.332;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.20;ReadPosRankSum=0.927;SOR=0.807;set=variant	GT:AD:DP:GQ:PGT:PID:PL	0/1:54,40:94:99:.:.:1049,0,1495
chr3	46480801	.	A	G	9818.49	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=1.48;ClippingRankSum=0.00;DP=832;ExcessHet=11.4027;FS=1.176;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.36;ReadPosRankSum=-6.780e-01;SOR=0.805;set=variant	GT:AD:DP:GQ:PL	0/1:61,60:121:99:1722,0,1618
chr3	46480958	.	C	G	8840.47	PASS	AC=1;AF=0.389;AN=2;BaseQRankSum=-7.940e-01;ClippingRankSum=0.00;DP=970;ExcessHet=3.9991;FS=0.000;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=13.31;ReadPosRankSum=7.000e-03;SOR=0.722;set=variant	GT:AD:DP:GQ:PL	0/1:90,78:168:99:1909,0,2301
chr3	46501284	.	C	CCTT	11930.86	PASS	AC=2;AF=0.944;AN=2;BaseQRankSum=-1.681e+00;ClippingRankSum=0.00;DP=296;ExcessHet=3.0103;FS=3.894;MLEAC=17;MLEAF=0.944;MQ=60.00;MQRankSum=0.00;QD=28.35;ReadPosRankSum=0.207;SOR=0.379;set=variant2	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2178,150,0
chr3	46713457	.	C	G	5206.43	PASS	AC=2;AF=0.389;AN=2;BaseQRankSum=-2.710e-01;ClippingRankSum=0.00;DP=386;ExcessHet=0.0693;FS=3.016;MLEAC=7;MLEAF=0.389;MQ=60.00;MQRankSum=0.00;QD=25.40;ReadPosRankSum=1.71;SOR=1.119;set=variant	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2638,267,0
chr3	46729757	.	C	G	9469.06	PASS	AC=2;AF=0.444;AN=2;BaseQRankSum=-6.950e-01;ClippingRankSum=0.00;DP=618;ExcessHet=0.2709;FS=6.835;MLEAC=8;MLEAF=0.444;MQ=60.00;MQRankSum=0.00;QD=23.21;ReadPosRankSum=-1.280e-01;SOR=1.205;set=variant	GT:AD:DP:GQ:PL	1/1:2,118:120:99:3837,276,0
chr3	46751073	.	TAAGAAG	TAAG,T	6479.87	PASS	AC=1,1;AF=0.833,0.111;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.00;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=15,2;MLEAF=0.833,0.111;MQ=60.00;MQRankSum=0.00;QD=28.36;ReadPosRankSum=-2.195e+00;SOR=0.706;set=variant2	GT:AD:DP:GQ:PL	1/2:0,22,7:29:99:1194,274,208,910,0,888
chr3	47036565	.	G	A	3135.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=2.70;ClippingRankSum=0.00;DP=352;ExcessHet=0.8432;FS=0.839;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=21.48;ReadPosRankSum=0.228;SOR=0.562;set=variant	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2251,207,0
chr3	47036578	.	G	A	3911.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=3.08;ClippingRankSum=0.00;DP=403;ExcessHet=0.8432;FS=1.587;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=21.49;ReadPosRankSum=0.499;SOR=0.515;set=variant	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2916,267,0
chr3	47043238	.	C	T	3771.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.00;DP=514;ExcessHet=0.8432;FS=1.543;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=15.09;ReadPosRankSum=0.857;SOR=0.798;set=variant	GT:AD:DP:GQ:PL	1/1:2,89:91:99:2669,224,0
chr3	47047562	.	T	C	2405.62	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-5.020e-01;ClippingRankSum=0.00;DP=235;ExcessHet=0.8432;FS=5.898;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=22.27;ReadPosRankSum=0.755;SOR=0.623;set=variant	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1856,174,0
chr3	47049193	.	A	G	2031.71	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=2.66;ClippingRankSum=0.00;DP=191;ExcessHet=0.8432;FS=0.000;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=24.78;ReadPosRankSum=2.65;SOR=0.712;set=variant	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1306,108,0
chr3	47162661	.	A	G	18718.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=4.01;ClippingRankSum=0.00;DP=601;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=60.00;MQRankSum=0.00;QD=31.62;ReadPosRankSum=0.612;SOR=0.770;set=variant	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3699,307,0
chr3	47162886	.	C	T	6379.61	PASS	AC=2;AF=0.222;AN=2;BaseQRankSum=-2.702e+00;ClippingRankSum=0.00;DP=587;ExcessHet=0.8432;FS=3.017;MLEAC=4;MLEAF=0.222;MQ=60.00;MQRankSum=0.00;QD=18.65;ReadPosRankSum=-2.720e-01;SOR=0.547;set=variant	GT:AD:DP:GQ:PL	1/1:3,136:139:99:4408,297,0
chr3	47462200	.	T	C	21762.45	PASS	AC=2;AF=1.00;AN=2;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=30.39;SOR=0.977;set=variant	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3850,372,0
chr3	48625266	.	T	C	12960.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.350e-01;ClippingRankSum=0.00;DP=1087;ExcessHet=9.7754;FS=1.099;MLEAC=9;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=12.50;ReadPosRankSum=-1.320e-01;SOR=0.708;set=variant	GT:AD:DP:GQ:PL	0/1:72,83:155:99:1892,0,1754
chr3	48670483	.	G	A	656.62	PASS	AC=1;AF=0.111;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.00;DP=372;ExcessHet=3.2736;FS=0.806;MLEAC=2;MLEAF=0.111;MQ=60.00;MQRankSum=0.00;QD=6.91;ReadPosRankSum=-3.220e-01;SOR=0.547;set=variant	GT:AD:DP:GQ:PL	0/1:46,16:62:99:278,0,1096
chr3	49395673	.	GGCCGCC	G,GGCC	11770.86	PASS	AC=2,0;AF=0.833,0.111;AN=2;BaseQRankSum=-9.800e-02;ClippingRankSum=0.00;DP=379;ExcessHet=3.0103;FS=7.270;MLEAC=15,2;MLEAF=0.833,0.111;MQ=50.59;MQRankSum=-5.151e+00;QD=29.65;ReadPosRankSum=-9.720e-01;SOR=1.468;set=variant2	GT:AD:DP:GQ:PL	1/1:0,38,0:38:99:1703,115,0,1703,115,1703
chr3	49548008	.	C	G	12131.45	PASS	AC=2;AF=1.00;AN=2;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=18;MLEAF=1.00;MQ=60.00;QD=32.52;SOR=1.748;set=variant	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1999,186,0
chr3	49723784	.	C	A	15419.64	PASS	AC=2;AF=0.778;AN=2;BaseQRankSum=-1.695e+00;ClippingRankSum=0.00;DP=801;ExcessHet=4.8226;FS=12.276;MLEAC=14;MLEAF=0.778;MQ=52.08;MQRankSum=2.18;QD=19.87;ReadPosRankSum=-5.230e-01;SOR=0.758;set=variant	GT:AD:DP:GQ:PL	1/1:3,112:115:99:3393,250,0
chr3	49724808	.	T	C	24273.62	PASS	AC=2;AF=0.889;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.00;DP=955;ExcessHet=3.2736;FS=0.000;MLEAC=16;MLEAF=0.889;MQ=56.40;MQRankSum=-3.215e+00;QD=25.80;ReadPosRankSum=-1.070e-01;SOR=0.662;set=variant	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4225,402,0
chr3	49726028	.	T	C	2519.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.4