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##bcftools_annotateCommand=annotate -Oz -o annotated.vcf.gz -a intervals.bed -h header.hdr -c CHROM,FROM,TO,FIXITFELIX /cromwell_root/ephemeral-files/workspace/SingleSampleGenotyping/4b5008e6-8dec-4275-b1f0-32ef049a220e/call-PatchVCF/patched.vcf.gz; Date=Mon Oct 14 05:13:32 2024 ##bcftools_viewVersion=1.11+htslib-1.11 ##bcftools_viewCommand=view -e FILTER="RefCall" -Oz -o KJD779-001.deepvariant.vcf.gz /cromwell_root/ephemeral-files/workspace/SingleSampleGenotyping/4b5008e6-8dec-4275-b1f0-32ef049a220e/call-AddFlagToVCF/annotated.vcf.gz; Date=Mon Oct 14 05:17:18 2024 ##bcftools_normVersion=1.11+htslib-1.11 ##bcftools_normCommand=norm -m-any /cromwell_root/ephemeral-files/workspace/SingleSampleGenotyping/4b5008e6-8dec-4275-b1f0-32ef049a220e/call-remove_ref_calls/KJD779-001.deepvariant.vcf.gz; Date=Mon Oct 14 05:22:38 2024 ##bcftools_normCommand=norm -Oz -o KJD779-001.variants.GRCh38.vcf.gz --check-ref w -f /cromwell_root/reference-files-256312/genomes/hg38/Homo_sapiens_assembly38.fasta; Date=Mon Oct 14 05:22:39 2024 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT KJD779-001 chr1 69552 . G C 13.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:4:0,4:1:13,17,0 chr1 601515 . T C 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:32:25,7:0.21875:5,0,16 chr1 601544 . G A 8.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:41:30,10:0.243902:7,0,14 chr1 609507 . G A 16.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:25:14,11:0.44:16,9,0 chr1 609520 . G A 3.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:21:15,6:0.285714:0,6,0 chr1 610007 . C A 6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:6:2,4:0.666667:4,8,0 chr1 610075 . C A 23.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:10:2,8:0.8:23,15,0 chr1 610137 . C T 27.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:5:0,5:1:27,17,0 chr1 610514 . C T 24.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:48:3,45:0.9375:24,16,0 chr1 611317 . A G 19.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:11:3,8:0.727273:19,27,0 chr1 744224 . C A 24.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:9:0,9:1:24,28,0 chr1 923421 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:80:53,27:0.3375:37,0,53 chr1 924024 . C G 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:14:8,6:0.428571:40,0,41 chr1 924321 . C G 9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:7:3,4:0.571429:8,0,26 chr1 931131 . C CCCCT 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:95:37,54:0.568421:45,0,53 chr1 939285 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:97:49,48:0.494845:49,0,50 chr1 941119 . A G 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:34:0,34:1:61,50,0 chr1 942451 . T C 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:59:1,56:0.949153:60,45,0 chr1 946247 . G A 28.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:72:48,23:0.319444:28,0,42 chr1 946354 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:27:13,14:0.518519:49,0,49 chr1 948245 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:35:0,35:1:47,37,0 chr1 951097 . G A 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:28,29:0.508772:47,0,57 chr1 952091 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:99:55,44:0.444444:48,0,48 chr1 952157 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:27:15,12:0.444444:53,0,65 chr1 952180 . A C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:18:0,18:1:55,51,0 chr1 952421 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:78:0,78:1:55,45,0 chr1 953259 . T C 44.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:111:0,111:1:44,34,0 chr1 953279 . T C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:62:0,62:1:46,37,0 chr1 953778 . G C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:48:0,48:1:54,44,0 chr1 953779 . A C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:48:0,48:1:48,41,0 chr1 956021 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:122:65,57:0.467213:50,0,52 chr1 959193 . G A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:128:71,57:0.445313:48,0,49 chr1 961570 . C A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:37:18,19:0.513514:51,0,56 chr1 961945 . G C 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:88:46,42:0.477273:41,0,49 chr1 962943 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:20:0,20:1:50,41,0 chr1 964546 . GC G 21.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:23:13,10:0.434783:21,0,50 chr1 964548 . G C 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/0:20:22:1,11:0.5:41,26,21 chr1 964548 . G T 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:22:1,10:0.454545:41,26,46 chr1 964557 . G T 32.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:18:0,18:1:32,25,0 chr1 964558 . G C 32.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:20:0,18:0.9:32,16,0 chr1 964562 . G A 24.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:20:8,12:0.6:24,0,23 chr1 964563 . G C 25.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:21:13,8:0.380952:25,0,52 chr1 964580 . T C 9.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:16:13,3:0.1875:9,0,49 chr1 966179 . G A 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:5:1,4:0.8:35,0,24 chr1 966227 . C G 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:34:0,34:1:54,43,0 chr1 966272 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:56:0,56:1:51,38,0 chr1 966426 . G C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:58:32,26:0.448276:50,0,52 chr1 972242 . G C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:43:23,20:0.465116:45,0,49 chr1 973858 . G C 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:92:66,26:0.282609:41,0,57 chr1 973929 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:105:68,37:0.352381:53,0,61 chr1 973983 . A C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:74:40,34:0.459459:51,0,61 chr1 974388 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:53:0,53:1:57,34,0 chr1 976215 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:22:0,22:1:54,40,0 chr1 976669 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,33:1:54,40,0 chr1 978953 . C G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:14,21:0.6:52,0,58 chr1 979472 . G C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:38:18,20:0.526316:55,0,55 chr1 979496 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:38:0,37:0.973684:55,50,0 chr1 979560 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:56:28,27:0.482143:57,0,67 chr1 979847 . A G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:55:1,54:0.981818:56,41,0 chr1 981169 . A G 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:55:0,55:1:62,46,0 chr1 982112 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:33,41:0.554054:47,0,50 chr1 999394 . G T 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:22:16,6:0.272727:27,0,51 chr1 999842 . C A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:54:23,31:0.574074:57,0,64 chr1 999884 . G C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:21,19:0.475:43,0,58 chr1 1013541 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:25:14,11:0.44:46,0,56 chr1 1014274 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:76:35,41:0.539474:51,0,53 chr1 1041126 . AGCGGGGGC A 37 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:52:0,52:1:37,35,0 chr1 1041249 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:106:65,41:0.386792:43,0,57 chr1 1041950 . T C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:79:0,79:1:56,42,0 chr1 1042190 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:114:64,49:0.429825:50,0,52 chr1 1043223 . CCT C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:109:64,45:0.412844:53,0,62 chr1 1045707 . A G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:46:23,23:0.5:45,0,51 chr1 1046551 . A G 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:157:89,68:0.433121:44,0,57 chr1 1047561 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:126:76,50:0.396825:48,0,59 chr1 1047614 . T C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:144:83,61:0.423611:50,0,58 chr1 1048822 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:18:8,10:0.555556:48,0,46 chr1 1048922 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:109:59,50:0.458716:57,0,53 chr1 1049467 . G C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:68:37,31:0.455882:53,0,55 chr1 1049859 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:164:72,92:0.560976:51,0,55 chr1 1050063 . AG A 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:84:22,62:0.738095:33,0,29 chr1 1050066 . G T 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:82:64,18:0.219512:5,0,22 chr1 1050069 . G A 18.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:72:54,18:0.25:18,0,38 chr1 1050070 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:69:20,48:0.695652:44,0,40 chr1 1050080 . T C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:23,31:0.574074:48,0,51 chr1 1050520 . C T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:115:49,66:0.573913:56,0,46 chr1 1050619 . G T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:37:17,20:0.540541:49,0,52 chr1 1051063 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:89:46,43:0.483146:52,0,54 chr1 1051357 . T C 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:122:70,51:0.418033:34,0,44 chr1 1051820 . C T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:64:31,33:0.515625:49,0,52 chr1 1054900 . C T 66.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:85:0,85:1:66,52,0 chr1 1055393 . C T 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:48:1,47:0.979167:55,46,0 chr1 1055426 . G A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:43:1,42:0.976744:44,26,0 chr1 1065797 . G C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:48:0,48:1:52,37,0 chr1 1071823 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:23:0,23:1:57,41,0 chr1 1072052 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:58:24,34:0.586207:52,0,45 chr1 1086035 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:52:0,52:1:60,38,0 chr1 1179288 . G A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:50,34:0.404762:45,0,50 chr1 1182832 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:19:10,9:0.473684:52,0,56 chr1 1203583 . C T 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:53:29,24:0.45283:55,0,54 chr1 1212042 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:60:21,39:0.65:58,0,57 chr1 1220751 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:67:36,31:0.462687:47,0,42 chr1 1223251 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:99:0,99:1:56,46,0 chr1 1281168 . TC T 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:44:25,19:0.431818:38,0,67 chr1 1281170 . TGG T 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:45:25,20:0.444444:37,0,62 chr1 1285574 . G A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:72:33,39:0.541667:52,0,49 chr1 1286887 . G C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:110:49,61:0.554545:54,0,55 chr1 1287218 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:36:17,19:0.527778:54,0,53 chr1 1287315 . G C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:17:7,10:0.588235:46,0,65 chr1 1288005 . G C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:78:41,37:0.474359:43,0,50 chr1 1290232 . G A 20.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:19:3,16:0.842105:20,0,26 chr1 1290261 . C A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:23:6,17:0.73913:47,0,37 chr1 1290887 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:84:44,40:0.47619:50,0,52 chr1 1296403 . A G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:33:15,17:0.515152:43,0,60 chr1 1298561 . T C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:65:32,33:0.507692:44,0,47 chr1 1309011 . A AG 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:39:14,25:0.641026:46,0,53 chr1 1310624 . A G 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:69:0,69:1:59,51,0 chr1 1312114 . T C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:36:24,12:0.333333:43,0,55 chr1 1312175 . C T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:13,10:0.416667:44,0,46 chr1 1313807 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:102:60,42:0.411765:49,0,54 chr1 1319056 . A G 63.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:98:0,98:1:63,55,0 chr1 1319063 . G A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:94:51,43:0.457447:53,0,60 chr1 1319461 . C G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:39,29:0.426471:46,0,59 chr1 1327211 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:24:7,17:0.708333:51,0,40 chr1 1327586 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:87:48,39:0.448276:48,0,48 chr1 1327764 . G A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:62:1,61:0.983871:55,36,0 chr1 1331945 . G GC 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:100:15,84:0.84:55,50,0 chr1 1332271 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:13,12:0.48:47,0,59 chr1 1332779 . C T 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:61:38,23:0.377049:40,0,48 chr1 1333467 . T G 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:94:0,94:1:63,48,0 chr1 1334108 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:77:40,37:0.480519:50,0,64 chr1 1334174 . T C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:100:0,100:1:52,46,0 chr1 1341803 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:28,34:0.548387:54,0,53 chr1 1342153 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:77:0,77:1:59,44,0 chr1 1349110 . G A 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:15:7,8:0.533333:40,0,42 chr1 1353987 . CTG C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:41:2,39:0.951219:55,40,0 chr1 1354531 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:28:0,28:1:52,37,0 chr1 1355028 . A G 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:91:54,37:0.406593:40,0,54 chr1 1355201 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:36:11,25:0.694444:47,0,52 chr1 1355212 . CGGGAGCTG C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:48:15,32:0.666667:54,0,62 chr1 1355779 . GA G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:24:0,24:1:48,43,0 chr1 1361311 . C G 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,74:1:60,48,0 chr1 1374078 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:134:72,61:0.455224:52,0,53 chr1 1374694 . C G 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:71:43,28:0.394366:45,0,53 chr1 1374801 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:15,25:0.625:47,0,51 chr1 1387763 . CCT C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:75:32,42:0.56:49,0,58 chr1 1388013 . C T 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:42,42:0.5:48,0,52 chr1 1395346 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:34:18,16:0.470588:51,0,59 chr1 1395579 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:32,21:0.396226:48,0,54 chr1 1399320 . C T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:7:2,5:0.714286:44,0,43 chr1 1419135 . C G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:49:24,25:0.510204:52,0,54 chr1 1426175 . T C 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:65:41,24:0.369231:43,0,52 chr1 1426261 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:25,25:0.5:49,0,51 chr1 1426356 . G A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:33:17,16:0.484848:41,0,60 chr1 1433219 . A C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:28:0,28:1:48,36,0 chr1 1433267 . A T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:42:0,41:0.97619:53,41,0 chr1 1434687 . C G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:50:32,18:0.36:44,0,53 chr1 1450780 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:38,30:0.441176:47,0,55 chr1 1454315 . C T 19.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:28:14,14:0.5:19,0,40 chr1 1455495 . C T 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:62:42,20:0.322581:36,0,53 chr1 1455924 . T C 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:17:11,6:0.352941:45,0,52 chr1 1468434 . C T 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:66:36,30:0.454545:32,0,44 chr1 1482316 . C G 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:51:39,12:0.235294:30,0,34 chr1 1482624 . T C 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:40:25,15:0.375:32,0,58 chr1 1486151 . C A 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:37:25,12:0.324324:37,0,53 chr1 1486611 . G A 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:69:48,21:0.304348:30,0,41 chr1 1487887 . A G 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:53:26,27:0.509434:43,0,49 chr1 1490287 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:37:19,18:0.486486:58,0,63 chr1 1490296 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:42:22,20:0.47619:52,0,65 chr1 1490320 . T C 62.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:54:26,28:0.518519:62,0,62 chr1 1509240 . C T 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:97:52,45:0.463918:37,0,58 chr1 1516000 . T C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:56:30,26:0.464286:42,0,48 chr1 1516109 . T C 26.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:111:59,52:0.468468:26,0,41 chr1 1516110 . G A 12.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:104:59,45:0.432692:12,0,34 chr1 1518892 . T A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:157:103,53:0.33758:42,0,48 chr1 1522875 . T G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:80:46,34:0.425:37,0,42 chr1 1522905 . A G 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:42:25,17:0.404762:34,0,34 chr1 1523574 . C T 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:83:50,33:0.39759:32,0,43 chr1 1533883 . G T 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:26:15,11:0.423077:2,0,45 chr1 1535428 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:108:66,42:0.388889:47,0,55 chr1 1543953 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:67:27,40:0.597015:56,0,55 chr1 1574445 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:32:12,20:0.625:45,0,44 chr1 1616547 . T C 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:18:12,6:0.333333:41,0,50 chr1 1623412 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:61:0,61:1:55,41,0 chr1 1625951 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:53:28,25:0.471698:51,0,48 chr1 1627057 . C G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:41:0,41:1:58,43,0 chr1 1634406 . C CG 31.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:63:26,36:0.571429:31,0,38 chr1 1636467 . A G 6.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:116:76,40:0.344828:4,0,40 chr1 1636479 . A C 3.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:104:70,34:0.326923:1,0,35 chr1 1637716 . A G 6.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:19:16,3:0.157895:5,0,42 chr1 1637819 . C A 4.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:110:76,33:0.3:2,0,33 chr1 1645163 . T C 23.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:11:1,10:0.909091:23,17,0 chr1 1652592 . A G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:27:15,12:0.444444:42,0,54 chr1 1668449 . A G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:79:55,24:0.303797:42,40,0 chr1 1676247 . A G 46 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:12:0,12:1:45,35,0 chr1 1703029 . T C 19 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:4:2,2:0.5:18,0,24 chr1 1703669 . G A 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:25:21,4:0.16:24,0,47 chr1 1704126 . C T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:88:48,40:0.454545:47,0,54 chr1 1704180 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:56:30,26:0.464286:50,0,64 chr1 1704504 . A C 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:32:17,15:0.46875:36,0,43 chr1 1704540 . G C 13.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:66:39,27:0.409091:13,0,52 chr1 1704605 . G A 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:93:66,27:0.290323:2,0,33 chr1 1704673 . G A 5.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:55:41,13:0.236364:4,0,45 chr1 1707486 . C T 9.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:150:95,55:0.366667:9,0,31 chr1 1707555 . C T 20.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:72:60,12:0.166667:20,0,34 chr1 1708131 . C T 15.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:52:37,15:0.288462:14,0,17 chr1 1708248 . G A 18 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:42:30,12:0.285714:17,0,40 chr1 1716489 . A G 28.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:62:31,30:0.483871:28,0,59 chr1 1719368 . T C 24.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:44:37,7:0.159091:24,0,48 chr1 1719406 . G A 18.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:55:46,9:0.163636:18,0,51 chr1 1721565 . T C 22.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:22:16,6:0.272727:22,0,51 chr1 1721589 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:45:27,18:0.4:45,0,64 chr1 1732412 . G C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:13,12:0.48:51,0,62 chr1 1732422 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:14,18:0.5625:55,0,56 chr1 1738309 . A G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:83:45,38:0.457831:41,0,38 chr1 1739595 . TG T 6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:4:2,2:0.5:4,0,9 chr1 1752908 . C CCCT 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:98:61,31:0.316327:44,0,53 chr1 1753033 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:93:45,48:0.516129:40,0,43 chr1 1755523 . C T 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:44:22,22:0.5:52,0,59 chr1 1756389 . C T 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:61:35,26:0.42623:36,0,55 chr1 1758323 . T C 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:20:14,6:0.3:30,0,49 chr1 1765220 . A G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:18:0,18:1:55,44,0 chr1 1915271 . G C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:30,17:0.361702:48,0,57 chr1 1915326 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:48:18,30:0.625:55,0,55 chr1 1916417 . G T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:40:0,40:1:53,42,0 chr1 1916540 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:152:88,64:0.421053:43,0,55 chr1 1916721 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:26,16:0.380952:53,0,55 chr1 1918090 . A G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:91:33,58:0.637363:58,0,57 chr1 1918091 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:91:58,33:0.362637:49,0,61 chr1 1918305 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:86:47,39:0.453488:49,0,50 chr1 1919188 . CAGCGGCAGG C 12.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:24:21,3:0.125:11,0,50 chr1 1922424 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:37:19,18:0.486486:53,0,58 chr1 1922670 . A G 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:80:0,80:1:61,46,0 chr1 1923107 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:29,24:0.428571:47,0,48 chr1 1923880 . C T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:100:49,51:0.51:42,0,50 chr1 1924378 . A ACC 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:20:9,10:0.5:37,0,33 chr1 1926632 . G T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:21,24:0.533333:52,0,50 chr1 1926722 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:29,14:0.325581:48,0,63 chr1 1926870 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:49,39,0 chr1 1927737 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:18,20:0.526316:50,0,52 chr1 1930143 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:103:66,37:0.359223:47,0,56 chr1 1942014 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:12:0,12:1:49,23,0 chr1 1942075 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:32:0,32:1:51,42,0 chr1 1942086 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:35:0,35:1:56,43,0 chr1 1944419 . C G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:54:30,24:0.444444:56,0,81 chr1 1944420 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:54:30,23:0.425926:51,0,65 chr1 1964894 . G A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:27:11,16:0.592593:54,0,52 chr1 1985090 . C T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:45:28,17:0.377778:44,0,50 chr1 1985343 . C A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:18,9:0.333333:45,0,68 chr1 1985367 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:42:27,15:0.357143:47,0,60 chr1 1985451 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:80:47,33:0.4125:50,0,61 chr1 1987049 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:35:17,18:0.514286:51,0,55 chr1 1990864 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:50:26,24:0.48:55,0,62 chr1 2024545 . C T 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:88:0,88:1:61,47,0 chr1 2024923 . G A 64.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:72:0,72:1:64,44,0 chr1 2025598 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:58:0,58:1:56,38,0 chr1 2056554 . T C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:69:0,69:1:55,37,0 chr1 2059575 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:91:64,27:0.296703:45,0,52 chr1 2074301 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:173:0,173:1:55,45,0 chr1 2074669 . A G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:57:49:0,49:1:60,59,0 chr1 2074688 . G A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:72:45,27:0.375:46,0,58 chr1 2151019 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:14,9:0.391304:49,0,60 chr1 2157315 . A C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:76:35,41:0.539474:52,0,48 chr1 2175323 . C A 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:96:51,45:0.46875:40,0,44 chr1 2182126 . T G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:72:37,35:0.486111:46,0,56 chr1 2189679 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:49:0,49:1:47,35,0 chr1 2193733 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:61:28,33:0.540984:51,0,56 chr1 2213349 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:123:69,54:0.439024:51,0,53 chr1 2213543 . G T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:56:0,56:1:50,35,0 chr1 2247560 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:16:6,10:0.625:54,0,53 chr1 2348590 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:57:28,29:0.508772:53,0,49 chr1 2355481 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:57:32,25:0.438596:50,0,59 chr1 2355508 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:39:0,39:1:56,56,0 chr1 2358704 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:55:21,33:0.6:47,0,43 chr1 2400952 . C T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:33,17:0.34:44,0,62 chr1 2406687 . C A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:31,32:0.507937:51,0,56 chr1 2408761 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:130:0,130:1:60,51,0 chr1 2430581 . G T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:79:44,35:0.443038:47,0,47 chr1 2467680 . A G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:16:0,16:1:44,37,0 chr1 2467710 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:12:7,5:0.416667:52,0,62 chr1 2478453 . A G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:67:42,25:0.373134:43,0,55 chr1 2480012 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:76:48,28:0.368421:47,0,49 chr1 2491175 . G A 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:66:0,65:0.984848:57,44,0 chr1 2494809 . G C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:32:15,17:0.53125:55,0,54 chr1 2499178 . C T 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:182:114,68:0.373626:42,0,56 chr1 2499618 . C T 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:63:32,31:0.492063:43,0,53 chr1 2502461 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:85:46,38:0.447059:58,0,64 chr1 2504299 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:65:31,33:0.507692:46,0,45 chr1 2504864 . A C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:118:72,46:0.38983:46,0,52 chr1 2509919 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:178:78,100:0.561798:54,0,49 chr1 2509953 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:123:59,64:0.520325:57,0,61 chr1 2513967 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:112:57,55:0.491071:55,0,51 chr1 2515521 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:45:28,17:0.377778:51,0,54 chr1 2518485 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:30,53:0.630952:55,0,45 chr1 2520918 . G A 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:85:47,38:0.447059:38,0,49 chr1 2521130 . T C 65.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:98:0,98:1:65,51,0 chr1 2556714 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:91:0,91:1:57,39,0 chr1 2559459 . C A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:65:0,64:0.984615:58,35,0 chr1 2559503 . C A 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:80:0,80:1:59,43,0 chr1 2559766 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:172:0,172:1:57,42,0 chr1 2562891 . G A 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:229:147,82:0.358079:33,0,48 chr1 2586747 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:21:0,21:1:53,38,0 chr1 2589061 . G A 61.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:48:22,26:0.541667:61,0,60 chr1 2589088 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:31:14,17:0.548387:55,0,67 chr1 2592766 . C T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:25,18:0.418605:46,0,60 chr1 2595307 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:210:84,125:0.595238:47,0,44 chr1 2596694 . T C 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:81:50,31:0.382716:44,0,41 chr1 2604174 . C A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:88:45,43:0.488636:51,0,52 chr1 2604319 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:12,18:0.6:46,0,63 chr1 2605656 . G A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:20,34:0.62963:51,0,51 chr1 2606399 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:16,19:0.527778:49,0,53 chr1 2609830 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:114:56,58:0.508772:45,0,48 chr1 2629296 . A G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:29:12,17:0.586207:58,0,54 chr1 2629443 . G A 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:108:52,53:0.490741:33,0,41 chr1 2629464 . T G 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:42,34:0.447368:43,0,55 chr1 2641760 . A G 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:80:0,80:1:62,43,0 chr1 2783572 . G C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:32:0,31:0.96875:52,41,0 chr1 2800059 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:70:32,38:0.542857:56,0,54 chr1 2800222 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:64:29,34:0.53125:49,0,54 chr1 3069321 . C G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:17,11:0.392857:47,0,51 chr1 3396544 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:126:75,51:0.404762:49,0,61 chr1 3411794 . T C 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:82:1,81:0.987805:62,45,0 chr1 3426240 . G T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:12,20:0.625:58,0,54 chr1 3433861 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:31:17,14:0.451613:49,0,56 chr1 3463078 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:103:55,48:0.466019:49,0,54 chr1 3467334 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:49:0,49:1:56,36,0 chr1 3473163 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:131:68,63:0.480916:54,0,52 chr1 3477892 . T C 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:90:0,90:1:61,55,0 chr1 3478076 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:13:0,13:1:47,29,0 chr1 3478475 . G A 32.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:112:73,39:0.348214:32,0,43 chr1 3480624 . T C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:32:1,31:0.96875:46,31,0 chr1 3496940 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:12:3,9:0.75:47,0,41 chr1 3497136 . A T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:24:14,10:0.416667:48,0,58 chr1 3497304 . C G 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:64:43,21:0.328125:37,0,50 chr1 3499885 . C A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:59:35,24:0.40678:48,0,55 chr1 3501827 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:52:27,24:0.461538:52,0,62 chr1 3507824 . G A 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:72:52,20:0.277778:29,0,53 chr1 3511596 . T G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:71:37,34:0.478873:53,0,56 chr1 3512044 . G A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:68:40,28:0.411765:40,0,55 chr1 3524083 . T C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:26:0,26:1:49,43,0 chr1 3524260 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:37:21,16:0.432432:47,0,56 chr1 3579915 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:60:0,58:0.966667:55,40,0 chr1 3595444 . G T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:16,11:0.407407:45,0,59 chr1 3602615 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:55:0,54:0.981818:53,35,0 chr1 3625542 . T TG 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:61:28,32:0.52459:53,0,56 chr1 3627671 . TA T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:19,30:0.6:50,0,51 chr1 3628611 . GTTCTGGGAGCTCCTCCCCC G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:29:9,20:0.689655:45,0,62 chr1 3631572 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:76:42,34:0.447368:50,0,54 chr1 3635097 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:28,41:0.594203:50,0,48 chr1 3635334 . C A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:21:11,10:0.47619:59,0,67 chr1 3635337 . C T 63.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:62:21:11,10:0.47619:63,0,69 chr1 3635341 . A G 62.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:21:11,10:0.47619:62,0,64 chr1 3683186 . TG T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:17,20:0.540541:49,0,56 chr1 3722110 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:83:41,42:0.506024:48,0,55 chr1 3727785 . A G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:62:28,33:0.532258:56,0,64 chr1 3727810 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:22,20:0.47619:50,0,59 chr1 3729280 . G A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:24:7,17:0.708333:43,0,40 chr1 3771466 . C G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:84:49,35:0.416667:43,0,53 chr1 3781136 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:115:73,42:0.365217:49,0,58 chr1 3796513 . G T 16.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:12:9,3:0.25:16,0,44 chr1 3815539 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:38:0,38:1:56,35,0 chr1 3826755 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:93:46,47:0.505376:52,0,49 chr1 3828993 . G T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:30,24:0.444444:47,0,50 chr1 3829223 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:34:0,34:1:48,40,0 chr1 3830019 . G T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:36:21,15:0.416667:51,0,60 chr1 3830025 . C G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:26:0,26:1:54,49,0 chr1 3831016 . C T 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:12,9:0.428571:46,0,54 chr1 3831039 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:33:0,33:1:56,51,0 chr1 3836449 . G C 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:108:67,41:0.37963:41,0,50 chr1 3836468 . G GT 5 PASS . GT:GQ:DP:AD:VAF:PL 1/0:2:125:59,14:0.112:0,3,24 chr1 3836468 . G GTTTT 5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:125:59,11:0.088:0,3,30 chr1 3837249 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:16,10:0.384615:45,0,59 chr1 3839111 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:163:0,163:1:57,44,0 chr1 3843220 . A G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:45:0,45:1:57,44,0 chr1 3843244 . G C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:65:35,30:0.461538:49,0,54 chr1 3843325 . T TA 4.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:25:5,17:0.68:2,0,12 chr1 3844901 . T A 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:51:23,28:0.54902:56,0,58 chr1 3844915 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:35,32:0.477612:53,0,55 chr1 3852469 . A T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:48:24,24:0.5:53,0,58 chr1 3852470 . A T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:24,24:0.5:49,0,56 chr1 3856982 . A C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:19:13,6:0.315789:49,0,50 chr1 3857024 . C G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:50:26,24:0.48:50,0,50 chr1 3857154 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:1,53:0.981481:49,45,0 chr1 3857169 . C A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:54:29,25:0.462963:50,0,58 chr1 3857566 . A G 62.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:61:25:12,13:0.52:62,0,65 chr1 3857574 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:28:13,15:0.535714:60,0,57 chr1 3857732 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:27:13,14:0.518519:55,0,62 chr1 3857748 . T C 63.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:18:8,10:0.555556:63,0,70 chr1 3858890 . C G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:34:0,34:1:53,40,0 chr1 3865961 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:29,19:0.395833:46,0,52 chr1 3883678 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:117:70,47:0.401709:54,0,57 chr1 3890079 . T A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:38,49:0.563218:48,0,55 chr1 3891029 . G C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:33:0,33:1:53,37,0 chr1 3891607 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:49,46,0 chr1 4711993 . T C 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:82:52,30:0.365854:40,0,54 chr1 4712657 . G A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:59:28,31:0.525424:54,0,52 chr1 4772543 . T G 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:21:14,7:0.333333:37,0,55 chr1 5865311 . G A 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:17,13:0.433333:47,0,61 chr1 5866447 . T C 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:79:56,23:0.291139:33,0,52 chr1 5874430 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:82:0,81:0.987805:54,42,0 chr1 5877267 . C T 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:60:44,16:0.266667:39,0,54 chr1 5877331 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:32:1,31:0.96875:51,36,0 chr1 5879484 . T G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:35:0,35:1:58,42,0 chr1 5887248 . G A 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:22:16,6:0.272727:35,0,57 chr1 5890953 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:135:73,62:0.459259:50,0,54 chr1 5905321 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:96:54,42:0.4375:48,0,51 chr1 5927636 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:88:46,42:0.477273:53,0,57 chr1 5992521 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:0,17:1:53,34,0 chr1 6082248 . T C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:33,20:0.377358:44,0,59 chr1 6097222 . C T 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:37:0,37:1:61,48,0 chr1 6097374 . C T 65.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:101:0,101:1:65,46,0 chr1 6098502 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:34:0,34:1:52,44,0 chr1 6101994 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:34:0,34:1:52,39,0 chr1 6102523 . G A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:71:0,71:1:61,46,0 chr1 6103075 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,74:1:58,48,0 chr1 6103081 . C T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:73:0,73:1:58,47,0 chr1 6103524 . C T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:108:0,108:1:60,43,0 chr1 6103865 . C T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:47:0,47:1:60,37,0 chr1 6104490 . A AGG 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:71:0,68:0.957747:59,52,0 chr1 6144162 . C G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:70:40,30:0.428571:47,0,53 chr1 6149205 . G T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:23,15:0.394737:47,0,57 chr1 6149303 . T C 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:161:91,70:0.434783:41,0,53 chr1 6151123 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:26,28:0.518519:49,0,53 chr1 6159303 . G T 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:62:34,28:0.451613:42,0,55 chr1 6180068 . G A 26 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:6:1,5:0.833333:25,0,14 chr1 6192886 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:36:17,19:0.527778:56,0,56 chr1 6192905 . CCA C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:56:27,29:0.517857:51,0,60 chr1 6197796 . G A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:44:20,24:0.545455:55,0,59 chr1 6206733 . G C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:50:25,25:0.5:56,0,59 chr1 6207463 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:265:141,122:0.460377:49,0,56 chr1 6212077 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:16,17:0.515152:49,0,49 chr1 6218354 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:35,36:0.507042:53,0,54 chr1 6245232 . C A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:16,14:0.466667:52,0,57 chr1 6245243 . C A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:28:14,14:0.5:55,0,59 chr1 6253878 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:51:0,51:1:55,39,0 chr1 6254762 . T C 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:78:0,78:1:62,50,0 chr1 6281300 . AGGGCGGGGGTCAGGGCGGCCTCCACCCCACGGCT A 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:37:22,15:0.405405:13,0,59 chr1 6295005 . G C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:32:11,21:0.65625:50,0,43 chr1 6327267 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:56:27,29:0.517857:52,0,58 chr1 6339600 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:28:13,15:0.535714:56,0,62 chr1 6413234 . A G 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:134:88,46:0.343284:42,0,52 chr1 6436829 . C A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:31:11,20:0.645161:41,0,49 chr1 6440487 . G A 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:97:54,43:0.443299:38,0,48 chr1 6440530 . C CG 25.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:33:13,15:0.454545:25,0,19 chr1 6440544 . C CG 33.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:31:3,24:0.774194:33,21,0 chr1 6440550 . AC A 19.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:39:0,36:0.923077:19,30,0 chr1 6440566 . C CG 25.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:52:0,51:0.980769:25,41,0 chr1 6441092 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:23:10,13:0.565217:51,0,49 chr1 6447165 . C G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:109:78,31:0.284404:56,0,61 chr1 6447167 . G C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:110:78,32:0.290909:53,0,61 chr1 6448062 . G C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:73:42,31:0.424658:50,0,60 chr1 6448652 . T C 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:95:54,41:0.431579:38,0,52 chr1 6448812 . C T 29.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:5:1,4:0.8:29,0,25 chr1 6465197 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:31,25:0.446429:49,0,49 chr1 6465532 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:27,29:0.508772:50,0,46 chr1 6468009 . C G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:18,12:0.4:45,0,55 chr1 6468260 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:47:28,19:0.404255:46,0,60 chr1 6469383 . A G 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:111:65,46:0.414414:44,0,51 chr1 6469688 . G T 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:26,18:0.409091:43,0,57 chr1 6470375 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:104:50,54:0.519231:45,0,52 chr1 6470905 . C CG 46.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:86:5,56:0.651163:46,33,0 chr1 6473333 . G C 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:68:33,33:0.485294:53,0,56 chr1 6519547 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:0,54:1:56,44,0 chr1 6526010 . C T 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:55:0,55:1:61,49,0 chr1 6545710 . G GCCCATGAGCACA 26.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:73:56,9:0.123288:26,0,57 chr1 6545786 . C T 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:18,16:0.470588:48,0,69 chr1 6554170 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:97:45,52:0.536082:50,0,51 chr1 6554331 . A C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,36:0.972973:55,44,0 chr1 6554355 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:37:0,37:1:56,49,0 chr1 6554475 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:61:29,32:0.52459:49,0,48 chr1 6571259 . G A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:25:14,11:0.44:41,0,54 chr1 6575171 . A G 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:67:0,67:1:55,46,0 chr1 6576401 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:26,23:0.469388:52,0,49 chr1 6644536 . G A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:36:24,12:0.333333:43,0,59 chr1 6644575 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:70:1,68:0.971429:57,53,0 chr1 6645814 . G C 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:35:0,35:1:61,47,0 chr1 6887657 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:96:47,48:0.5:49,0,53 chr1 7467936 . T C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:78:0,78:1:57,52,0 chr1 7661891 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:46:27,19:0.413043:46,0,54 chr1 7663474 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:96:44,52:0.541667:50,0,55 chr1 7663897 . G A 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:101:0,101:1:61,44,0 chr1 7665224 . C A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:28:15,13:0.464286:55,0,61 chr1 7665249 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:17:6,11:0.647059:51,0,55 chr1 7736581 . A G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:89:0,89:1:58,48,0 chr1 7751155 . A G 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,74:1:63,47,0 chr1 7788273 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:17:7,10:0.588235:54,0,61 chr1 7801093 . C CT 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:19:0,19:1:50,35,0 chr1 7809855 . G C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:34:0,34:1:49,36,0 chr1 7809988 . T C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:110:0,110:1:58,49,0 chr1 7827433 . T C 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:106:0,106:1:61,50,0 chr1 7830004 . A G 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:188:0,188:1:62,48,0 chr1 7853370 . G A 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:40:0,40:1:59,48,0 chr1 7940737 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:44:17,27:0.613636:58,0,56 chr1 7961718 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:73:49,24:0.328767:46,0,61 chr1 7961747 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:80:46,34:0.425:51,0,67 chr1 7962764 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:64:33,29:0.453125:47,0,60 chr1 7969449 . G GA 15.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:18:11,6:0.333333:15,0,39 chr1 7969450 . G A 4.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:17:10,6:0.352941:1,0,38 chr1 7970863 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:19,20:0.512821:50,0,55 chr1 7977604 . A G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:25:10,14:0.56:60,0,96 chr1 7977638 . A G 61.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:38:16,22:0.578947:61,0,64 chr1 8015560 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:59:31,27:0.457627:52,0,55 chr1 8330324 . G C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:135:73,61:0.451852:50,0,54 chr1 8330435 . A G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:84:0,84:1:57,44,0 chr1 8335500 . G T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:179:103,76:0.424581:49,0,57 chr1 8358584 . C A 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:66:0,66:1:57,45,0 chr1 8358590 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:66:0,66:1:60,48,0 chr1 8361143 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:109:0,109:1:52,44,0 chr1 8365840 . T C 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:77:0,77:1:62,49,0 chr1 8614533 . T G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:32,35:0.522388:52,0,56 chr1 8949347 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:89:54,35:0.393258:50,0,56 chr1 8949385 . A C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:64:40,24:0.375:49,0,60 chr1 8951478 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:39:28,11:0.282051:47,0,58 chr1 8951527 . T G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:45:0,45:1:57,53,0 chr1 8951663 . G T 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:50:0,49:0.98:52,37,0 chr1 8974362 . G A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:80:51,29:0.3625:43,0,55 chr1 8992725 . C T 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:131:83,48:0.366412:41,0,59 chr1 9003543 . G C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:27:16,11:0.407407:47,0,57 chr1 9105626 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:105:64,41:0.390476:43,0,54 chr1 9234844 . C G 27.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:11:6,5:0.454545:27,0,42 chr1 9244919 . CCCCAGGCA C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:35:14,21:0.6:46,0,60 chr1 9245386 . A C 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:90:49,41:0.455556:42,0,47 chr1 9264154 . C T 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:81:49,32:0.395062:43,0,52 chr1 9264512 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:80:0,79:0.9875:60,45,0 chr1 9264611 . A G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:85:0,84:0.988235:58,42,0 chr1 9356287 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:94:47,47:0.5:52,0,60 chr1 9598407 . T G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:20:0,20:1:58,46,0 chr1 9598649 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:27:1,26:0.962963:53,36,0 chr1 9610776 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:62:0,62:1:52,38,0 chr1 9615318 . A G 64.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:112:0,112:1:64,50,0 chr1 9622200 . A G 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:77:1,75:0.974026:59,49,0 chr1 9720929 . T C 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:53:29,24:0.45283:42,0,55 chr1 9722498 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:48:17,31:0.645833:46,0,37 chr1 10072435 . C CTT 9.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:9:4,3:0.333333:8,0,33 chr1 10130826 . A T 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:51:20,31:0.607843:38,0,48 chr1 10158319 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:24:0,24:1:51,32,0 chr1 10158381 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:65:0,64:0.984615:52,34,0 chr1 10178712 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:115:67,48:0.417391:45,0,59 chr1 10211630 . C G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:80:53,27:0.3375:45,0,53 chr1 10267338 . AT A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:27:14,13:0.481481:53,0,72 chr1 10267349 . A T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:25:12,13:0.52:51,0,56 chr1 10282294 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:18,16:0.470588:47,0,59 chr1 10282571 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:42:0,42:1:57,42,0 chr1 10365059 . AT A 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:9:6,3:0.333333:29,0,50 chr1 10404118 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:14,14:0.5:52,0,55 chr1 10419578 . C G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:45:23,22:0.488889:52,0,52 chr1 10442250 . AT A 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:40:0,39:0.975:59,47,0 chr1 10451532 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:69:0,69:1:56,41,0 chr1 10469137 . T C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:20:13,7:0.35:38,0,49 chr1 10536331 . A G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:31:0,31:1:51,42,0 chr1 10629867 . C T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:133:74,58:0.43609:57,0,62 chr1 10629885 . G T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:133:60,73:0.548872:49,0,53 chr1 10643146 . G GC 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:64:26,36:0.5625:52,0,57 chr1 10648085 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:107:64,43:0.401869:48,0,56 chr1 10649210 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:48:17,31:0.645833:50,0,49 chr1 10649252 . C G 59.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:41:19,22:0.536585:59,0,63 chr1 10649384 . C T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:67:35,32:0.477612:47,0,49 chr1 10650792 . G GC 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:74:40,34:0.459459:47,0,55 chr1 10796635 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:43,46:0.516854:48,0,52 chr1 10948440 . G C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:91:50,41:0.450549:54,0,54 chr1 10948638 . T C 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:34:23,10:0.294118:38,0,53 chr1 10954061 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:68:42,26:0.382353:44,0,55 chr1 10955108 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:62:31,31:0.5:48,0,52 chr1 10957577 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:15:6,9:0.6:47,0,49 chr1 10958666 . A G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:22,20:0.47619:51,0,59 chr1 10964296 . A G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:34:17,17:0.5:58,0,62 chr1 11027227 . C G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:98:45,52:0.530612:51,0,54 chr1 11027467 . G A 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:60:0,60:1:59,44,0 chr1 11030840 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:21,23:0.522727:52,0,53 chr1 11030859 . C A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:36:17,19:0.527778:45,0,51 chr1 11043351 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:21,23:0.522727:51,0,54 chr1 11046591 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:60:41,19:0.316667:40,0,45 chr1 11059842 . T C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:12:0,12:1:41,26,0 chr1 11068597 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:35:18,17:0.485714:50,0,53 chr1 11072160 . G A 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:51:34,17:0.333333:37,0,53 chr1 11073899 . A AAAG 21.6 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:80:52,5:0.0625:18,0,47 chr1 11073899 . A AAG 21.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:80:52,15:0.1875:18,0,47 chr1 11080553 . GAAAA G 10.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:134:84,36:0.268657:10,0,33 chr1 11080565 . C A 11.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:113:70,43:0.380531:10,0,24 chr1 11081130 . C G 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:130:83,47:0.361538:41,0,46 chr1 11121270 . C T 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:54:21,33:0.611111:55,0,52 chr1 11127836 . T C 67.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:65:0,65:1:67,53,0 chr1 11130589 . G A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:226:146,80:0.353982:44,0,53 chr1 11145001 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:88:57,31:0.352273:47,0,60 chr1 11228701 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:30,24:0.444444:52,0,48 chr1 11241657 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:52:32,20:0.384615:52,0,61 chr1 11262508 . C G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:75:43,32:0.426667:51,0,56 chr1 11262571 . G T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:14,6:0.285714:46,0,58 chr1 11528050 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:154:90,63:0.409091:50,0,51 chr1 11534343 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:21:0,21:1:45,32,0 chr1 11534981 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:52:33,19:0.365385:47,0,58 chr1 11535146 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:75:44,30:0.4:48,0,45 chr1 11536398 . C T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:102:53,49:0.480392:54,0,53 chr1 11536705 . C T 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:13:8,5:0.384615:37,0,50 chr1 11648679 . T C 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:81:39,42:0.518519:54,0,55 chr1 11650722 . C CGCG 33.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:52:32,20:0.384615:33,0,57 chr1 11654311 . T G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,18:1:47,34,0 chr1 11676994 . G C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:59:23,36:0.610169:50,0,44 chr1 11681739 . T A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:9,14:0.608696:50,0,54 chr1 11682017 . C T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:32:0,32:1:58,46,0 chr1 11712469 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:37:19,18:0.486486:43,0,49 chr1 11747402 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:15,26:0.634146:57,0,46 chr1 11764289 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:14:7,7:0.5:56,0,67 chr1 11764499 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:56:31,25:0.446429:51,0,51 chr1 11764518 . T C 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:37:0,37:1:60,56,0 chr1 11764521 . C T 62.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:62:36:20,16:0.444444:62,0,99 chr1 11766573 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:77:46,31:0.402597:45,0,58 chr1 11767123 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:50:0,50:1:59,51,0 chr1 11767247 . A G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:64:0,64:1:56,50,0 chr1 11767298 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:16,16:0.5:48,0,51 chr1 11768181 . G A 59.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:60:25,35:0.583333:59,0,56 chr1 11768262 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:97:51,46:0.474227:54,0,56 chr1 11771558 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:80:43,37:0.4625:51,0,52 chr1 11772043 . T A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:15,15:0.5:48,0,53 chr1 11772254 . G C 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:23:11,12:0.521739:45,0,49 chr1 11776571 . T C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:44:23,21:0.477273:57,0,54 chr1 11776625 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:35:18,17:0.485714:54,0,60 chr1 11778783 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:19,18:0.486486:49,0,63 chr1 11778791 . G T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:18,20:0.526316:51,0,65 chr1 11779909 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:92:58,34:0.369565:54,0,60 chr1 11779941 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:96:57,39:0.40625:48,0,65 chr1 11784273 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:86:51,35:0.406977:50,0,49 chr1 11784367 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:40:16,24:0.6:51,0,45 chr1 11785112 . T G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:21:12,9:0.428571:44,0,47 chr1 11785318 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:13:4,9:0.692308:48,0,47 chr1 11787702 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:41,41:0.5:48,0,51 chr1 11787997 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:214:106,108:0.504673:51,0,43 chr1 11788822 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:100:0,100:1:57,49,0 chr1 11789390 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:134:0,134:1:59,49,0 chr1 11792184 . C G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:60:28,32:0.533333:51,0,47 chr1 11794400 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:128:57,71:0.554688:52,0,52 chr1 11794698 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:121:76,45:0.371901:40,0,55 chr1 11796321 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:122:71,51:0.418033:47,0,52 chr1 11805747 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:8,13:0.619048:48,0,49 chr1 11816635 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:28,15:0.348837:48,0,61 chr1 11824498 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:77:0,77:1:51,45,0 chr1 11824529 . G A 17.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:89:78,11:0.123596:17,0,32 chr1 11827246 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:20,15:0.428571:47,0,63 chr1 11833665 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:21:7,14:0.666667:56,0,55 chr1 11834195 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:25,29:0.537037:47,0,54 chr1 11837535 . A G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:23,24:0.510638:51,0,50 chr1 11838792 . T G 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:100:63,37:0.37:37,0,54 chr1 11846011 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:92:58,33:0.358696:49,0,52 chr1 11922487 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:28:1,27:0.964286:55,37,0 chr1 11923149 . A G 34.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:88:0,88:1:34,22,0 chr1 11949898 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:82:34,47:0.573171:50,0,42 chr1 11949899 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:82:48,34:0.414634:43,0,49 chr1 11964178 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:103:49,54:0.524272:54,0,49 chr1 11980146 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:14:0,14:1:48,29,0 chr1 11980267 . A G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:58:0,58:1:57,42,0 chr1 11980422 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:57:0,56:0.982456:53,43,0 chr1 11981920 . G GTTTTTT 35.1 PASS . GT:GQ:DP:AD:VAF:PL 1/0:6:20:10,3:0.15:33,15,18 chr1 11981920 . G GTTTTTTT 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:20:10,5:0.25:33,15,5 chr1 12002148 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:104:0,104:1:52,40,0 chr1 12005968 . G C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:13,16:0.551724:49,0,53 chr1 12022869 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:70:0,70:1:57,45,0 chr1 12104334 . G C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:52:30,21:0.403846:48,0,53 chr1 12110231 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:41:26,15:0.365854:44,0,49 chr1 12115761 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:27:0,27:1:55,45,0 chr1 12138240 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:0,49:1:53,39,0 chr1 12167107 . G A 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:15:6,9:0.6:34,0,45 chr1 12253784 . C T 17.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:32:25,7:0.21875:17,0,56 chr1 12279562 . A T 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:63:44,19:0.301587:31,0,46 chr1 12282933 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:60:27,33:0.55:54,0,59 chr1 12341811 . A C 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:141:0,141:1:60,49,0 chr1 12578990 . T C 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:10:4,6:0.6:46,0,44 chr1 12793254 . A C 26.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:65:38,27:0.415385:26,0,50 chr1 12794279 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:73:42,31:0.424658:47,0,58 chr1 12794395 . T C 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:60:30,30:0.5:34,0,45 chr1 12795729 . A C 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:101:67,33:0.326733:41,0,40 chr1 12827720 . T G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:102:0,102:1:44,33,0 chr1 12847526 . T C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:78:33,45:0.576923:45,0,45 chr1 12858964 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:38:23,15:0.394737:45,0,60 chr1 12859108 . G T 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:94:57,37:0.393617:32,0,40 chr1 12859209 . T G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:55:40,15:0.272727:41,0,57 chr1 12859224 . C G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:54:38,16:0.296296:50,0,58 chr1 12859318 . A G 29.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:26:15,11:0.423077:29,0,47 chr1 12859670 . C T 8.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:10:8,2:0.2:7,0,44 chr1 12859768 . C T 28.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:47:35,12:0.255319:28,0,53 chr1 12859769 . C G 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:47:34,13:0.276596:34,0,56 chr1 12860073 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:25:17,8:0.32:52,0,68 chr1 12860079 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:27:19,8:0.296296:47,0,66 chr1 12860108 . T G 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:33:25,8:0.242424:40,0,60 chr1 12860212 . C G 25.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:25:20,5:0.2:25,0,52 chr1 12860585 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:22:8,14:0.636364:44,0,28 chr1 12860725 . C G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:59:31,28:0.474576:49,0,52 chr1 12861255 . A G 28.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:36:30,6:0.166667:28,0,47 chr1 12861272 . A G 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:37:28,9:0.243243:37,0,54 chr1 12861277 . A G 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:35:25,10:0.285714:38,0,54 chr1 12861477 . T C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:69:36,33:0.478261:44,0,63 chr1 12861478 . G A 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:71:44,27:0.380282:43,0,62 chr1 12861531 . G A 3.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:89:51,38:0.426966:0,0,22 chr1 12861796 . G A 12.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:30:26,4:0.133333:12,0,41 chr1 12879619 . C G 10.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:30:18,12:0.4:10,0,32 chr1 12879843 . A T 18.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:112:70,41:0.366071:18,0,36 chr1 12879973 . G T 3.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:101:70,31:0.306931:1,0,16 chr1 12879994 . G A 13.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:108:83,25:0.231481:12,0,23 chr1 12882298 . T C 37.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:31:0,31:1:37,36,0 chr1 12883140 . A C 31.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:116:81,35:0.301724:31,0,38 chr1 12893335 . T G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:106:31,75:0.707547:44,0,31 chr1 12893339 . G A 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:100:72,28:0.28:33,0,55 chr1 12895136 . T G 34.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:18:0,18:1:34,33,0 chr1 12917806 . G A 20.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:2:0,2:1:20,15,0 chr1 12920302 . C G 12.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:191:91,100:0.52356:12,17,0 chr1 12920307 . T C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:174:86,87:0.5:44,35,0 chr1 13175352 . C T 14.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:74:64,10:0.135135:14,0,22 chr1 13176222 . C T 7.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:7:3,4:0.571429:6,0,10 chr1 13178951 . G A 19.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:100:61,38:0.38:19,0,42 chr1 13224919 . T A 17.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:150:120,30:0.2:17,0,35 chr1 13225001 . A G 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:171:47,124:0.725146:55,0,58 chr1 13225068 . A G 6.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:161:126,35:0.217391:4,0,37 chr1 13225208 . C G 7.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:214:179,35:0.163551:6,0,37 chr1 13225359 . A G 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:84:45,39:0.464286:35,0,35 chr1 13225361 . C A 24.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:73:31,42:0.575342:24,0,56 chr1 13225986 . C T 19 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:71:44,25:0.352113:18,0,50 chr1 13263006 . G T 13.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:5:2,3:0.6:10,0,2 chr1 13306635 . T C 3.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:10:0,10:1:0,34,0 chr1 13306667 . A G 27.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:27,40,0 chr1 13307108 . G A 17.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:7:4,3:0.428571:16,4,0 chr1 13308295 . C T 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:7:4,3:0.428571:2,0,18 chr1 13308343 . C T 7.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:10:5,5:0.5:7,19,0 chr1 13308363 . A T 5.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:23:14,9:0.391304:3,0,5 chr1 13308366 . G C 25.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:24:14,8:0.333333:25,12,0 chr1 13318367 . C T 34.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:9:0,9:1:34,27,0 chr1 13371759 . A G 42 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:15:0,15:1:41,33,0 chr1 13389694 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:12,13:0.52:52,0,55 chr1 13390443 . T A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:25,19:0.431818:47,0,46 chr1 13391901 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:20:10,10:0.5:43,0,39 chr1 13392079 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:47:27,20:0.425532:43,0,49 chr1 13416600 . C T 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:31:20,11:0.354839:40,0,55 chr1 13418237 . C G 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:38:28,10:0.263158:40,0,51 chr1 13420763 . G A 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:33:27,6:0.181818:13,0,43 chr1 13421192 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:25,25:0.5:51,0,51 chr1 13475857 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:46:21,25:0.543478:48,0,48 chr1 13475969 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:99:64,35:0.353535:47,0,57 chr1 13614369 . C G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:48:0,48:1:50,41,0 chr1 13705237 . G C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:17:0,17:1:49,25,0 chr1 13705261 . A C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:15:0,15:1:48,29,0 chr1 13705319 . TC T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:24:13,11:0.458333:42,0,53 chr1 13816508 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:69:0,69:1:57,42,0 chr1 13823127 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:29,31:0.5:51,0,49 chr1 13893691 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:129:74,55:0.426357:49,0,54 chr1 15112494 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:102:44,58:0.568627:51,0,45 chr1 15112587 . A AAGGTCTTTTTTTTCTTCTCCCAGCGGC 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:78:43,21:0.269231:46,0,68 chr1 15112731 . C A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:105:66,39:0.371429:57,0,52 chr1 15112737 . G GC 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:106:68,38:0.358491:58,0,60 chr1 15112917 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:110:0,110:1:58,42,0 chr1 15112994 . AC A 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:73:1,72:0.986301:61,49,0 chr1 15114533 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:89:47,42:0.47191:54,0,56 chr1 15164369 . T A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:105:61,44:0.419048:42,0,47 chr1 15171231 . T C 64.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:142:0,142:1:64,49,0 chr1 15215041 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:18:0,18:1:55,36,0 chr1 15219581 . G A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:65:34,31:0.476923:49,0,55 chr1 15287147 . T C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:108:63,44:0.407407:48,0,51 chr1 15289687 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:12,13:0.52:51,0,60 chr1 15324566 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:50:0,50:1:48,37,0 chr1 15327067 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:36:0,36:1:51,34,0 chr1 15328241 . C CT 34.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:23:2,16:0.695652:34,28,0 chr1 15341780 . G A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:52:0,52:1:61,44,0 chr1 15388313 . G C 28.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:4:1,3:0.75:27,6,0 chr1 15388335 . C T 11.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:27:5,22:0.814815:10,12,0 chr1 15445562 . G T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:42:18,24:0.571429:55,0,56 chr1 15457150 . G A 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:100:55,45:0.45:58,0,58 chr1 15482272 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:29:0,29:1:54,44,0 chr1 15482377 . G A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:28:0,28:1:57,45,0 chr1 15483381 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:130:0,129:0.992308:43,36,0 chr1 15485937 . A G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:63:0,63:1:56,42,0 chr1 15487256 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:28:0,28:1:52,48,0 chr1 15487474 . A C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:34:0,34:1:51,38,0 chr1 15506048 . T C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:82:0,82:1:56,41,0 chr1 15518120 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:72:0,72:1:53,37,0 chr1 15518431 . C T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:21:0,21:1:54,37,0 chr1 15524058 . C CGGGGGCG 45.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:31:0,27:0.870968:45,33,0 chr1 15524118 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:67:0,67:1:53,43,0 chr1 15524569 . A ATCCCCGCACTGACCTCACG 34.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:69:18,14:0.202899:34,41,0 chr1 15546891 . A G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:16:0,16:1:44,28,0 chr1 15548466 . T A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:4:0,4:1:36,9,0 chr1 15583355 . C G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:60,44,0 chr1 15583400 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:25:0,25:1:51,44,0 chr1 15584854 . G A 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:54:1,53:0.981481:62,45,0 chr1 15584998 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:1,24:0.96:48,39,0 chr1 15633391 . C G 35 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:7:0,7:1:34,19,0 chr1 15684510 . G GGGC 30.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:5:0,5:1:30,12,0 chr1 15743149 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:138:69,69:0.5:49,0,54 chr1 15770439 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:78:43,35:0.448718:45,0,55 chr1 15916125 . C A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:44:23,21:0.477273:54,0,53 chr1 15929149 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:78:45,33:0.423077:43,0,48 chr1 15929512 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:65:0,65:1:54,43,0 chr1 15933318 . A G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:85:0,85:1:60,48,0 chr1 15934421 . C T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:146:65,81:0.554795:47,0,49 chr1 15935909 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:134:48,86:0.641791:52,0,49 chr1 15937769 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:12,11:0.458333:50,0,61 chr1 15944685 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:57:24,33:0.578947:46,0,54 chr1 15944765 . G A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:130:65,65:0.5:60,0,61 chr1 15945755 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:148:0,148:1:57,45,0 chr1 15948274 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:23,26:0.530612:48,0,53 chr1 16026052 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:101:0,100:0.990099:58,44,0 chr1 16032557 . A G 61.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:89:0,88:0.988764:61,47,0 chr1 16040387 . A C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:51:0,51:1:46,38,0 chr1 16040432 . A C 33.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:16:0,16:1:33,34,0 chr1 16040449 . A G 18.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:3:0,3:1:18,30,0 chr1 16040454 . A G 7.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:3:0,2:0.666667:6,18,0 chr1 16041201 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:39:28,11:0.282051:51,0,58 chr1 16041215 . G GCATGAGC 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:63:46,15:0.238095:51,0,58 chr1 16041282 . G A 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:96:67,29:0.302083:29,0,59 chr1 16041357 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:117:71,45:0.384615:52,0,55 chr1 16041442 . C T 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:101:64,36:0.356436:35,0,54 chr1 16041638 . A G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:41:0,41:1:58,46,0 chr1 16043136 . C T 21.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:16:2,14:0.875:21,0,10 chr1 16043381 . C T 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:21:18,3:0.142857:37,0,55 chr1 16043396 . G A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:16:13,3:0.1875:36,0,59 chr1 16043819 . G T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:31:18,13:0.419355:45,0,53 chr1 16043932 . CGGGGG C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/0:38:71:0,36:0.507042:49,41,50 chr1 16043932 . CGGG C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:71:0,28:0.394366:49,41,51 chr1 16043984 . T C 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:74:51,23:0.310811:39,0,55 chr1 16044378 . C CACACACACACACAT 43.1 PASS . GT:GQ:DP:AD:VAF:PL 1/0:10:141:1,13:0.0921986:42,12,37 chr1 16044378 . C CACACACACAT 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:141:1,77:0.546099:42,12,33 chr1 16044404 . G A 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:169:1,168:0.994083:56,37,0 chr1 16044572 . G T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:113:1,111:0.982301:57,44,0 chr1 16045377 . C G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:22:0,22:1:54,34,0 chr1 16045437 . A C 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:47:0,47:1:62,51,0 chr1 16045508 . G C 71.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:57:83:0,83:1:71,57,0 chr1 16045787 . GT G 7.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:83:70,11:0.13253:7,0,39 chr1 16045788 . T G 25.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:72:4,65:0.902778:23,0,2 chr1 16046629 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:57:0,56:0.982456:57,43,0 chr1 16046704 . CCTT C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:37:1,36:0.972973:57,43,0 chr1 16047835 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:59:0,59:1:52,38,0 chr1 16048038 . G C 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:82:0,82:1:62,44,0 chr1 16048127 . C G 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:62:0,62:1:62,41,0 chr1 16048161 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:59:0,59:1:49,39,0 chr1 16048499 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:68:1,67:0.985294:50,38,0 chr1 16048568 . C G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:75:0,75:1:42,20,0 chr1 16048569 . A C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:76:0,76:1:42,30,0 chr1 16048715 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:14,15:0.517241:49,0,52 chr1 16048859 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:86:1,85:0.988372:57,39,0 chr1 16049343 . C G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:89:0,88:0.988764:53,51,0 chr1 16049696 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:26:0,26:1:43,30,0 chr1 16049735 . A AT 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:38:0,38:1:46,48,0 chr1 16049737 . A T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:49,44,0 chr1 16049743 . TC T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:1,37:0.973684:44,51,0 chr1 16049783 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:0,49:1:44,42,0 chr1 16049824 . T C 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:72:0,72:1:61,53,0 chr1 16049963 . T C 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:24:0,24:1:50,37,0 chr1 16050613 . G C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:112:54,58:0.517857:52,0,50 chr1 16052513 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:68:0,68:1:49,35,0 chr1 16053701 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:107:0,107:1:55,43,0 chr1 16053757 . C T 15 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:137:92,45:0.328467:14,0,47 chr1 16055223 . T C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:16:0,16:1:48,43,0 chr1 16055227 . C T 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:16:12,4:0.25:37,0,60 chr1 16055297 . T A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:45,18:0.285714:50,0,57 chr1 16055321 . C T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:81:57,24:0.296296:44,0,49 chr1 16055591 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:88:38,50:0.568182:54,0,55 chr1 16056296 . G C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:12:6,5:0.416667:44,0,58 chr1 16056332 . CTCT C 26.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:31:20,11:0.354839:26,0,63 chr1 16056336 . T A 34.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:35:23,12:0.342857:34,0,57 chr1 16056339 . T A 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:34:22,12:0.352941:33,0,58 chr1 16056382 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:63:0,63:1:55,46,0 chr1 16056385 . T A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:74:31,43:0.581081:54,0,60 chr1 16056772 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:74:41,33:0.445946:49,0,54 chr1 16056834 . T TC 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:54:6,44:0.814815:41,32,0 chr1 16056841 . G C 40.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:61:0,60:0.983607:40,51,0 chr1 16056853 . C T 20.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:84:42,42:0.5:20,0,30 chr1 16056953 . A C 27 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:71:0,71:1:26,26,0 chr1 16057173 . T G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:18:0,17:0.944444:48,40,0 chr1 16057247 . C G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:44:0,44:1:54,46,0 chr1 16058680 . G A 17.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:53:31,22:0.415094:17,0,14 chr1 16059485 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:43:0,43:1:44,34,0 chr1 16059513 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:44:0,44:1:47,40,0 chr1 16059921 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:83:0,83:1:46,38,0 chr1 16059952 . G C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:57:0,57:1:49,50,0 chr1 16060000 . C T 29.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:34:21,13:0.382353:29,0,48 chr1 16062061 . C T 35.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:39:0,39:1:35,35,0 chr1 16062070 . C G 20.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:42:27,15:0.357143:20,0,32 chr1 16062085 . C T 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:49:18,31:0.632653:38,0,33 chr1 16062151 . T C 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:85:0,84:0.988235:49,55,0 chr1 16062214 . G T 28.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:54:30,24:0.444444:28,0,57 chr1 16062242 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:36:17,19:0.527778:50,0,41 chr1 16062531 . T C 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:64:42,22:0.34375:37,0,53 chr1 16125272 . G A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:236:139,97:0.411017:43,0,51 chr1 16134248 . TAAC T 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:40:0,40:1:60,43,0 chr1 16138178 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:20,18:0.473684:50,0,56 chr1 16148344 . AC A 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:17:7,10:0.588235:43,0,54 chr1 16148628 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:95:55,40:0.421053:57,0,56 chr1 16148631 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:100:59,41:0.41:56,0,57 chr1 16153130 . GA G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:117:6,106:0.905983:59,44,0 chr1 16206003 . G A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:108:66,42:0.388889:45,0,54 chr1 16225364 . A G 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:91:0,91:1:57,44,0 chr1 16225921 . T A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:100:0,100:1:52,42,0 chr1 16233046 . C G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:45:0,45:1:58,42,0 chr1 16251413 . G C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:43:0,43:1:54,33,0 chr1 16367230 . T TG 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:131:76,53:0.40458:48,0,59 chr1 16399323 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:35,36:0.507042:52,0,57 chr1 16399541 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:24,18:0.428571:47,0,49 chr1 16400810 . G GCTT 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:109:61,47:0.431193:45,0,57 chr1 16403918 . C T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:26:13,13:0.5:56,0,66 chr1 16405151 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:26:0,26:1:58,51,0 chr1 16405152 . G C 69 PASS . GT:GQ:DP:AD:VAF:PL 0/1:67:26:8,18:0.692308:69,0,72 chr1 16409831 . C T 61 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:69:30,39:0.565217:60,0,61 chr1 16409832 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:70:40,30:0.428571:54,0,57 chr1 16410051 . C T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:27,29:0.517857:46,0,54 chr1 16421937 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:138:79,59:0.427536:47,0,49 chr1 16440864 . A G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:97:48,49:0.505155:46,0,47 chr1 16575132 . C A 5.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:43:35,8:0.186047:3,0,34 chr1 16576399 . A G 18.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:146:49,97:0.664384:18,0,16 chr1 16579347 . A G 21.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:14:11,3:0.214286:21,0,55 chr1 16582557 . C T 17.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:13:4,9:0.692308:16,0,7 chr1 16583569 . A G 22 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:158:97,61:0.386076:21,0,47 chr1 16585448 . T A 16.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:5:2,3:0.6:15,0,12 chr1 16585519 . A C 23.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:16:7,9:0.5625:23,0,29 chr1 16585568 . T A 9.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:24:19,5:0.208333:9,0,43 chr1 16589863 . G C 18.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:72:34,38:0.527778:18,0,26 chr1 16589999 . A C 12.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:98:64,34:0.346939:11,0,32 chr1 16591929 . G C 14.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:41:23,18:0.439024:14,0,38 chr1 16757312 . T C 16.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:83:49,33:0.39759:16,0,12 chr1 16757393 . C T 27.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:79:23,55:0.696203:27,26,0 chr1 16757434 . A C 18.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:54:36,18:0.333333:18,0,20 chr1 16759339 . G T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:137:0,137:1:36,32,0 chr1 16759413 . C G 26.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:48:35,13:0.270833:26,0,39 chr1 16759557 . T C 11.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:2:0,2:1:11,18,0 chr1 16760043 . T G 19.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:6:1,5:0.833333:19,10,0 chr1 16760046 . T C 19.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:3:0,3:1:19,16,0 chr1 16760375 . T C 31.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:3:0,3:1:31,24,0 chr1 16760749 . AC A 11.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:67:23,44:0.656716:11,0,28 chr1 16761087 . G A 18.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:195:144,51:0.261538:18,0,41 chr1 16918438 . A G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:78:0,78:1:50,41,0 chr1 16922005 . A G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:83:30,53:0.638554:56,0,45 chr1 16922724 . A G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:170:123,47:0.276471:43,0,60 chr1 16924341 . A G 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:88:58,30:0.340909:33,0,55 chr1 16924496 . T C 5.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:41:35,6:0.146341:3,0,34 chr1 16931345 . C G 25.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:249:176,72:0.289157:25,0,47 chr1 16937595 . A G 24.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:177:129,48:0.271186:24,0,44 chr1 16938368 . A G 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:28:20,8:0.285714:34,0,52 chr1 16938921 . G T 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:126:82,44:0.349206:38,0,49 chr1 16939106 . C T 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:300:198,102:0.34:40,0,48 chr1 16944296 . C T 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:137:100,37:0.270073:38,0,51 chr1 16946948 . C T 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:170:116,54:0.317647:40,0,58 chr1 16946998 . A C 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:138:97,41:0.297101:38,0,58 chr1 16948523 . C A 21.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:165:117,46:0.278788:21,0,37 chr1 16960919 . T C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:32:0,31:0.96875:47,31,0 chr1 16969184 . T C 65 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:88:0,88:1:65,54,0 chr1 16970794 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:20:0,20:1:44,30,0 chr1 16975285 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:61:0,60:0.983607:55,41,0 chr1 16977094 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:42:0,42:1:50,39,0 chr1 16986248 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:110:0,110:1:55,40,0 chr1 16986662 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:46:0,46:1:56,39,0 chr1 16986848 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:103:0,103:1:57,55,0 chr1 16987159 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:160:0,160:1:55,40,0 chr1 16988447 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:103:0,103:1:48,46,0 chr1 16992516 . G A 62.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:100:0,100:1:62,52,0 chr1 17033181 . C A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:57:0,57:1:60,40,0 chr1 17045190 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:13:0,13:1:47,25,0 chr1 17045260 . G C 39.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:9:0,9:1:39,20,0 chr1 17054002 . G T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:78:0,78:1:54,34,0 chr1 17069026 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:34:0,34:1:53,42,0 chr1 17070208 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:48:0,48:1:55,45,0 chr1 17075640 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:17:0,17:1:57,48,0 chr1 17075664 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:30:0,30:1:56,47,0 chr1 17075760 . C T 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:72:0,72:1:58,43,0 chr1 17075852 . C T 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:31:0,31:1:59,46,0 chr1 17079314 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:56:0,56:1:54,40,0 chr1 17079421 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:42:0,42:1:58,40,0 chr1 17079454 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:15:0,15:1:52,35,0 chr1 17083869 . G A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:31:0,31:1:58,42,0 chr1 17092388 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:52:0,52:1:55,46,0 chr1 17092399 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:58:0,58:1:55,46,0 chr1 17092571 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:31:0,31:1:58,34,0 chr1 17223730 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:37:0,37:1:53,42,0 chr1 17228821 . C G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:54:28,26:0.481481:42,0,54 chr1 17230229 . G A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:52:28,24:0.461538:43,0,57 chr1 17230544 . T C 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:55:41,14:0.254545:37,0,46 chr1 17230638 . A C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:67:45,22:0.328358:47,0,51 chr1 17230683 . C T 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:75:51,24:0.32:46,0,59 chr1 17237472 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:48:0,48:1:51,38,0 chr1 17238919 . G C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:80:44,36:0.45:47,0,50 chr1 17239036 . A C 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:109:0,109:1:60,43,0 chr1 17243971 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:24:0,24:1:58,48,0 chr1 17249150 . A C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:78:40,38:0.487179:58,0,59 chr1 17259639 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:29,33:0.532258:49,0,52 chr1 17266821 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:123:68,55:0.447154:51,0,56 chr1 17271160 . C T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:86:43,43:0.5:44,0,50 chr1 17271226 . A G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:22:9,13:0.590909:55,0,63 chr1 17274588 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:23:16,7:0.304348:43,0,53 chr1 17274670 . C T 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:87:56,31:0.356322:36,0,51 chr1 17331039 . G A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:53,23:0.302632:42,0,55 chr1 17331121 . T C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:56:34,21:0.375:49,0,62 chr1 17334004 . G C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:46,34:0.425:46,0,56 chr1 17336144 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:99:66,33:0.333333:53,0,56 chr1 17336167 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:102:67,35:0.343137:54,0,52 chr1 17336256 . C G 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:59:32,27:0.457627:36,0,46 chr1 17342068 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:62,42:0.403846:49,0,57 chr1 17346147 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:54:29,25:0.462963:45,0,48 chr1 17388369 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:54:0,54:1:54,40,0 chr1 17388586 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:67:0,67:1:55,45,0 chr1 17392254 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:24:0,24:1:52,35,0 chr1 17393943 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:46:0,46:1:58,43,0 chr1 17394049 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:89:0,89:1:53,36,0 chr1 17394119 . A C 66.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:41:0,41:1:66,54,0 chr1 17398862 . C G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:54:0,54:1:52,42,0 chr1 17410082 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:26:0,26:1:50,32,0 chr1 17412074 . AC A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:33:0,33:1:42,36,0 chr1 17603485 . C G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:16,21:0.567568:51,0,47 chr1 17623067 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:140:75,65:0.464286:50,0,50 chr1 17634850 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:35:16,19:0.542857:47,0,51 chr1 17696870 . C T 62.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:77:1,75:0.974026:62,46,0 chr1 17697014 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:57:0,57:1:56,42,0 chr1 17697195 . A G 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:67:1,66:0.985075:61,49,0 chr1 17823098 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:96:51,45:0.46875:52,0,53 chr1 18208969 . C T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:118:65,53:0.449153:44,0,51 chr1 18228039 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:27:12,15:0.555556:55,0,65 chr1 18378368 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:16,19:0.542857:52,0,56 chr1 18481403 . C G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:86:52,34:0.395349:51,0,64 chr1 18481444 . C A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:47,33:0.4125:45,0,60 chr1 18481798 . C A 29 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:81:57,24:0.296296:28,0,52 chr1 18481971 . T A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:70:40,30:0.428571:55,0,61 chr1 18482032 . A C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:77:44,33:0.428571:50,0,56 chr1 18482217 . G C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:23,20:0.465116:49,0,53 chr1 18839800 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:87:46,41:0.471264:50,0,48 chr1 18849352 . T C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:21,20:0.487805:48,0,50 chr1 18854521 . G C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:49,26:0.346667:48,0,54 chr1 18854588 . A C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:97:54,43:0.443299:50,0,60 chr1 18854899 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:62:39,23:0.370968:47,0,48 chr1 18857583 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:98:57,41:0.418367:51,0,51 chr1 18859635 . G C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:97:53,44:0.453608:48,0,48 chr1 18872993 . A G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:68:31,37:0.544118:54,0,56 chr1 18875434 . C T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:128:66,62:0.484375:58,0,60 chr1 18875462 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:101:48,53:0.524752:55,0,59 chr1 18876276 . T C 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:81:0,81:1:58,47,0 chr1 18876402 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:106:68,38:0.358491:40,0,58 chr1 18876423 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:92:61,30:0.326087:52,0,62 chr1 18876432 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:53,23:0.302632:43,0,57 chr1 18877503 . C G 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:105:0,105:1:61,45,0 chr1 18877660 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:31:15,16:0.516129:49,0,61 chr1 18881651 . G GGGTTGCCT 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:124:1,112:0.903226:59,54,0 chr1 18889340 . T C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:123:0,123:1:57,42,0 chr1 18911507 . T TTTTATTTA 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:18,8:0.285714:47,0,51 chr1 18921015 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:28,18:0.391304:48,0,53 chr1 19074911 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:79:49,30:0.379747:48,0,55 chr1 19081800 . G GC 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:94:47,47:0.5:47,0,54 chr1 19084635 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:99:52,47:0.474747:48,0,54 chr1 19086767 . T A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:145:71,73:0.503448:45,0,56 chr1 19088810 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:79:46,33:0.417722:45,0,53 chr1 19099705 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:34:15,19:0.558824:47,0,55 chr1 19106955 . A G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:37:22,15:0.405405:40,0,58 chr1 19121349 . C G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:53:36,17:0.320755:48,0,56 chr1 19161162 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:13,17:0.566667:53,0,53 chr1 19165363 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:32:21,11:0.34375:46,0,59 chr1 19173341 . G C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:27:10,16:0.592593:56,0,48 chr1 19183900 . A G 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:20:8,12:0.6:45,0,51 chr1 19192165 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:15:6,9:0.6:53,0,56 chr1 19193393 . G C 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:23:17,6:0.26087:32,0,48 chr1 19199796 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:28:10,18:0.642857:49,0,46 chr1 19222849 . G C 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:138:76,62:0.449275:41,0,39 chr1 19223370 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:16,16:0.5:53,0,61 chr1 19231219 . G C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:13,15:0.535714:51,0,58 chr1 19238156 . C G 28.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:121:79,42:0.347107:28,0,45 chr1 19238850 . C G 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:43:29,13:0.302326:34,0,49 chr1 19239802 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:100:54,46:0.46:52,0,64 chr1 19242478 . A G 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:159:91,68:0.427673:46,0,50 chr1 19256069 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:82:0,82:1:51,33,0 chr1 19257142 . C T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:51:33,18:0.352941:39,0,58 chr1 19257541 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:61:32,29:0.47541:51,0,53 chr1 19268643 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:69:0,69:1:48,39,0 chr1 19269398 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:39:1,38:0.974359:45,31,0 chr1 19269630 . C T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:44:0,44:1:46,26,0 chr1 19269662 . G T 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:44:0,44:1:41,18,0 chr1 19282760 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:120:1,119:0.991667:47,37,0 chr1 19284733 . G A 10.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:37:30,7:0.189189:10,0,42 chr1 19284747 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:34:0,34:1:48,40,0 chr1 19285983 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:70:40,30:0.428571:48,0,46 chr1 19311815 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:56,40,0 chr1 19312389 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:77:0,77:1:60,47,0 chr1 19324593 . G A 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:30:19,11:0.366667:39,0,64 chr1 19326380 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:76:34,42:0.552632:50,0,54 chr1 19327529 . A ATCCCTCCCTCCC 36.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:78:39,8:0.102564:36,13,0 chr1 19342741 . A G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:59:29,30:0.508475:44,0,47 chr1 19485444 . C T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:35,21:0.375:46,0,48 chr1 19623568 . T C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:32:20,12:0.375:41,0,58 chr1 19655298 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:0,58:1:59,43,0 chr1 19665879 . G T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:57:28,29:0.508772:55,0,57 chr1 19694500 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:54:0,54:1:58,47,0 chr1 19694501 . C T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:54:0,54:1:57,44,0 chr1 19700911 . G A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:33:20,13:0.393939:55,0,63 chr1 19700930 . T G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:14,8:0.363636:49,0,60 chr1 19740806 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:56:28,27:0.482143:56,0,54 chr1 19815035 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:72:36,36:0.5:49,0,51 chr1 19882332 . C G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:78:38,40:0.512821:50,0,54 chr1 19890367 . G A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:17,14:0.451613:48,0,54 chr1 19894520 . TCTAAGTCAG T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:19:9,10:0.526316:45,0,55 chr1 19920284 . C CG 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:15,15:0.483871:51,0,57 chr1 19978364 . G A 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:46:0,46:1:60,51,0 chr1 19978433 . G A 67.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:88:0,87:0.988636:67,55,0 chr1 20068908 . C A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:60:0,60:1:55,39,0 chr1 20084839 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:99:0,99:1:56,45,0 chr1 20115561 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:88:52,36:0.409091:52,0,53 chr1 20149898 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:112:42,70:0.625:56,0,51 chr1 20164025 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:58:25,33:0.568965:56,0,55 chr1 20323321 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:20:7,13:0.65:47,0,49 chr1 20330859 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:40:23,17:0.425:52,0,59 chr1 20345468 . G A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:28:13,15:0.535714:51,0,46 chr1 20345608 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:13,17:0.566667:46,0,49 chr1 20352058 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:61:30,31:0.508197:48,0,52 chr1 20354267 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:19:9,10:0.526316:46,0,60 chr1 20500650 . CA C 8.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:14:9,5:0.357143:8,0,44 chr1 20500723 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:59:29,30:0.508475:45,0,45 chr1 20503268 . A C 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:21:15,6:0.285714:34,0,54 chr1 20503315 . TA T 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:17:10,6:0.352941:38,0,45 chr1 20589096 . TC T 11.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:30:21,9:0.3:10,0,42 chr1 20618416 . G A 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:15:13,2:0.133333:31,0,48 chr1 20618429 . C T 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:22:16,6:0.272727:35,0,58 chr1 20618562 . C T 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:34:20,14:0.411765:38,0,48 chr1 20637835 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:57:0,57:1:57,50,0 chr1 20645555 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:31:0,28:0.903226:43,50,0 chr1 20645618 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:143:75,68:0.475524:54,0,59 chr1 20650507 . A C 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:74:1,73:0.986486:61,52,0 chr1 20650728 . A T 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:82:0,82:1:59,44,0 chr1 20652339 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:22:0,22:1:50,42,0 chr1 20653592 . AC A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:78:40,38:0.487179:53,0,56 chr1 20655658 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:68:40,27:0.397059:40,0,51 chr1 20656138 . G A 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:115:79,36:0.313043:37,0,54 chr1 20661380 . G C 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:45:0,45:1:59,43,0 chr1 20662264 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:72:30,42:0.583333:56,0,54 chr1 20662418 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:76:39,37:0.486842:50,0,66 chr1 20666326 . G C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:109:68,41:0.376147:42,0,53 chr1 20698408 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:43,39:0.47561:50,0,49 chr1 20704409 . G T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:19:9,10:0.526316:47,0,50 chr1 20713586 . C A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:36:17,19:0.527778:53,0,51 chr1 20717433 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:19:5,14:0.736842:54,0,47 chr1 20717668 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:50:27,23:0.46:47,0,52 chr1 20717726 . A C 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:17:0,17:1:54,40,0 chr1 20724465 . C T 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:137:85,52:0.379562:40,0,48 chr1 20765368 . G T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:15:5,10:0.666667:50,0,50 chr1 20840911 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:79:0,79:1:52,41,0 chr1 20853688 . C T 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:23:13,10:0.434783:39,0,53 chr1 20862210 . A T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:28:14,14:0.5:50,0,50 chr1 20862378 . C A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:17:8,9:0.529412:43,0,48 chr1 21050821 . C T 40.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:5:0,5:1:40,12,0 chr1 21176231 . TGCC T 26.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:9:6,3:0.333333:23,0,0 chr1 21468895 . A G 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:11:7,4:0.363636:35,0,45 chr1 21473330 . A G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:10:5,5:0.5:40,0,48 chr1 21474853 . G A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:8:4,4:0.5:41,0,46 chr1 21478322 . T G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:20:0,20:1:47,33,0 chr1 21483431 . G C 12.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:2:0,2:1:11,8,0 chr1 21554325 . C CATAT 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:70:27,35:0.5:38,0,50 chr1 21563142 . T C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:180:1,178:0.988889:44,37,0 chr1 21568242 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:165:89,76:0.460606:48,0,54 chr1 21570394 . G T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:108:63,45:0.416667:50,0,56 chr1 21570425 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:72:43,29:0.402778:55,0,67 chr1 21570432 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:64:37,27:0.421875:51,0,58 chr1 21573619 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:28:14,14:0.5:52,0,63 chr1 21573653 . C G 60.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:48:27,21:0.4375:60,0,67 chr1 21573658 . T C 59.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:54:30,24:0.444444:59,0,60 chr1 21573678 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:73:41,32:0.438356:57,0,61 chr1 21573903 . A C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:102:58,44:0.431373:43,0,58 chr1 21573904 . G T 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:102:58,44:0.431373:40,0,55 chr1 21573927 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:72:0,72:1:54,50,0 chr1 21573951 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:61:41,20:0.327869:46,0,63 chr1 21602767 . A G 63.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:35:0,35:1:63,49,0 chr1 21602963 . GC G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:31:3,28:0.903226:49,42,0 chr1 21606037 . C A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:20,28:0.583333:50,0,45 chr1 21608174 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:69:35,34:0.492754:56,0,63 chr1 21608200 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:114:59,54:0.473684:50,0,60 chr1 21608974 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:36:15,21:0.583333:57,0,58 chr1 21613248 . G C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:70:33,37:0.528571:44,0,44 chr1 21614062 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:64:36,28:0.4375:45,0,53 chr1 21626391 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:56:25,31:0.553571:49,0,44 chr1 21701618 . C A 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:40:25,15:0.375:40,0,51 chr1 21814713 . A C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:40:0,40:1:52,40,0 chr1 21821671 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:45:25,20:0.444444:54,0,58 chr1 21823442 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:98:0,98:1:55,38,0 chr1 21823627 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:91:44,47:0.516484:57,0,68 chr1 21823667 . G T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:95:50,45:0.473684:50,0,58 chr1 21823764 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:29:17,12:0.413793:47,0,51 chr1 21828352 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:78:39,39:0.5:52,0,52 chr1 21829348 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:24:10,14:0.583333:53,0,60 chr1 21829360 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:32:13,19:0.59375:58,0,53 chr1 21831196 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:52:0,52:1:57,47,0 chr1 21831627 . G T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:42:19,23:0.547619:50,0,52 chr1 21832515 . C A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:130:58,72:0.553846:49,0,52 chr1 21833618 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:49:27,22:0.44898:52,0,66 chr1 21833655 . C T 61 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:21:8,13:0.619048:60,0,57 chr1 21834782 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:154:70,84:0.545455:53,0,46 chr1 21839408 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:55:27,27:0.490909:54,0,53 chr1 21839494 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:106:65,41:0.386792:53,0,63 chr1 21841495 . G T 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:26:16,10:0.384615:41,0,55 chr1 21841723 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:34:0,34:1:58,48,0 chr1 21844335 . C G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:13:8,5:0.384615:50,0,55 chr1 21847933 . T G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:113:55,58:0.513274:46,0,45 chr1 21848107 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:86:0,86:1:54,39,0 chr1 21850007 . G T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:14,16:0.533333:50,0,51 chr1 21850338 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:46,45:0.494505:50,0,51 chr1 21855473 . G A 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:66:28,38:0.575758:55,0,54 chr1 21856978 . A C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:29:0,29:1:52,40,0 chr1 21857246 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:83:44,39:0.46988:48,0,60 chr1 21864868 . G C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:114:62,52:0.45614:49,0,53 chr1 21872588 . A T 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:29:0,29:1:53,36,0 chr1 21872752 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:96:0,95:0.989583:48,34,0 chr1 21873328 . G A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:38:0,38:1:50,34,0 chr1 21875616 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:74:0,74:1:52,44,0 chr1 21878973 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:45:0,44:0.977778:49,36,0 chr1 21880156 . T C 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:81:0,81:1:60,50,0 chr1 21880449 . G A 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:107:1,106:0.990654:59,49,0 chr1 21880742 . T C 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:185:1,183:0.989189:61,42,0 chr1 21881311 . ACCCAGGGTGGCAG A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:37:1,36:0.972973:49,36,0 chr1 21881537 . C T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:37:0,37:1:53,43,0 chr1 21884729 . T C 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:85:0,85:1:58,41,0 chr1 21890081 . C A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:74:0,74:1:53,44,0 chr1 21890111 . C G 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:57:0,57:1:54,42,0 chr1 21890615 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:83:0,83:1:56,39,0 chr1 21980847 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:40:0,40:1:58,42,0 chr1 21980865 . C G 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:44:0,44:1:46,41,0 chr1 21981045 . C T 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:49:0,49:1:60,44,0 chr1 21983646 . T G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:38:0,38:1:53,51,0 chr1 21983652 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:38:0,38:1:51,47,0 chr1 21983769 . G C 29.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:162:0,162:1:29,37,0 chr1 21984169 . G T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:18:0,18:1:56,40,0 chr1 21984181 . C T 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:19:0,19:1:58,44,0 chr1 21984232 . G C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:51:0,51:1:57,46,0 chr1 21984331 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:40:0,40:1:48,35,0 chr1 21986668 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:78:0,78:1:55,43,0 chr1 21986704 . C A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:41:0,41:1:51,44,0 chr1 21989245 . C T 35.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:31:0,31:1:35,26,0 chr1 22005621 . TG T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:42:23,18:0.428571:52,0,58 chr1 22009784 . C G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:118:0,118:1:55,49,0 chr1 22009878 . C A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:45:0,45:1:55,39,0 chr1 22052595 . G A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:22:0,22:1:46,37,0 chr1 22053035 . C G 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:10:0,10:1:41,17,0 chr1 22053176 . C G 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:41,27,0 chr1 22053178 . T G 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:12:0,12:1:39,25,0 chr1 22506250 . A T 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:43:0,43:1:52,38,0 chr1 22509184 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:50:0,50:1:51,42,0 chr1 22520216 . G A 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:77:0,77:1:59,37,0 chr1 22522510 . A C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:36:0,36:1:56,40,0 chr1 22526222 . G C 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:62:0,62:1:54,43,0 chr1 22586660 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:19,17:0.472222:51,0,50 chr1 22589260 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:79:44,35:0.443038:49,0,57 chr1 22593411 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:39:22,17:0.435897:52,0,61 chr1 22596067 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:30:16,14:0.466667:55,0,57 chr1 22600821 . A G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:16:11,5:0.3125:46,0,56 chr1 22600833 . T G 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:16:10,5:0.3125:32,0,53 chr1 22601772 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:14,17:0.548387:53,0,52 chr1 22638945 . A G 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:68:44,24:0.352941:37,0,51 chr1 22643799 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:93:55,36:0.387097:54,0,55 chr1 22775195 . T G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:101:66,35:0.346535:43,0,58 chr1 22893000 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:77:0,77:1:55,45,0 chr1 22910333 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:15,14:0.482759:48,0,55 chr1 22953111 . C T 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:39:21,18:0.461538:41,0,51 chr1 22963075 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:20:7,13:0.65:55,0,50 chr1 23073439 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:19:0,19:1:56,42,0 chr1 23091660 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:112:0,112:1:60,47,0 chr1 23092768 . G A 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:96:0,96:1:58,50,0 chr1 23092881 . G T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:38:0,38:1:54,35,0 chr1 23092890 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:34:0,34:1:57,46,0 chr1 23093362 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:26:0,26:1:53,34,0 chr1 23344310 . G C 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:24:14,10:0.416667:37,0,56 chr1 23362440 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:49:24,25:0.510204:50,0,55 chr1 23383684 . A G 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:66:1,65:0.984848:62,51,0 chr1 23384312 . A G 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:65:0,65:1:58,46,0 chr1 23387459 . T G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:22:0,22:1:53,37,0 chr1 23408748 . G T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:50:0,50:1:54,41,0 chr1 23424647 . G T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:108:0,108:1:47,40,0 chr1 23436956 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:185:99,86:0.464865:48,0,56 chr1 23484165 . G A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:12:0,12:1:42,24,0 chr1 23484568 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:49:0,48:0.979592:50,36,0 chr1 23509872 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:35:10,25:0.714286:51,0,39 chr1 23520972 . C A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:94:44,50:0.531915:51,0,56 chr1 23521550 . A G 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:43:27,16:0.372093:44,0,61 chr1 23559007 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:62:0,62:1:54,39,0 chr1 23691787 . C G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:70:0,70:1:58,46,0 chr1 23695947 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:28:14,14:0.5:52,0,54 chr1 23755794 . AAT A 3.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:12:10,2:0.166667:0,0,40 chr1 23755796 . T A 3.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:10:6,4:0.4:0,0,39 chr1 23757004 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:28,26:0.481481:49,0,54 chr1 23757159 . T C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:13:5,8:0.615385:48,0,47 chr1 23796496 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:219:122,97:0.442922:49,0,53 chr1 23800801 . C A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:27:16,11:0.407407:43,0,45 chr1 23802636 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:23,25:0.520833:48,0,48 chr1 23807122 . G A 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:75:36,39:0.52:59,0,57 chr1 23808231 . T C 63 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:97:0,97:1:63,52,0 chr1 23817442 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:114:0,113:0.991228:54,43,0 chr1 23825506 . C A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:20:8,12:0.6:54,0,57 chr1 23854472 . T C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:119:60,59:0.495798:49,0,46 chr1 23874604 . G C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:45,14:0.237288:47,0,55 chr1 23874619 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:45,17:0.274194:46,0,55 chr1 23874772 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:58:30,28:0.482759:49,0,51 chr1 23874867 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:67:39,28:0.41791:50,0,56 chr1 23874958 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:54:22,32:0.592593:48,0,43 chr1 23875153 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:103:50,53:0.514563:50,0,50 chr1 23875429 . T C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:89:58,31:0.348315:57,0,64 chr1 23875430 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:89:58,31:0.348315:58,0,67 chr1 23961914 . A G 16.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:11:7,4:0.363636:16,0,41 chr1 23967759 . C T 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:41:0,41:1:59,47,0 chr1 23967960 . CA C 44.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:64:6,41:0.640625:44,31,0 chr1 24057329 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:21:0,21:1:52,41,0 chr1 24066110 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:104:80,24:0.230769:42,0,50 chr1 24066181 . T C 28.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:122:95,27:0.221311:28,0,42 chr1 24067073 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:85:37,48:0.564706:49,0,49 chr1 24067934 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:56:24,32:0.571429:59,0,59 chr1 24068183 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:37:17,20:0.540541:47,0,59 chr1 24068321 . A G 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:81:51,30:0.37037:30,0,51 chr1 24074143 . C G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:68:0,68:1:55,44,0 chr1 24080157 . G A 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:57:38,19:0.333333:41,0,51 chr1 24082675 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:98:54,43:0.438776:55,0,59 chr1 24082701 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:61:32,29:0.47541:51,0,61 chr1 24086669 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:92:48,44:0.478261:54,0,51 chr1 24089569 . T C 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:67:0,67:1:58,57,0 chr1 24089580 . G C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:67:34,33:0.492537:50,0,54 chr1 24089643 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:41,28:0.405797:49,0,49 chr1 24092278 . T C 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:59,45,0 chr1 24093006 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:71:0,71:1:46,37,0 chr1 24094844 . G T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:49:0,49:1:56,44,0 chr1 24094984 . G A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:37:0,37:1:52,28,0 chr1 24095460 . C G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:67:0,67:1:54,42,0 chr1 24108105 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:24,19:0.44186:46,0,53 chr1 24120978 . G C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:77:53,24:0.311688:41,0,54 chr1 24121594 . G A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:111:59,52:0.468468:46,0,54 chr1 24134307 . T G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:97:51,46:0.474227:48,0,54 chr1 24138623 . C T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:149:79,70:0.469799:45,0,51 chr1 24159028 . T C 66.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:60:0,60:1:66,50,0 chr1 24159451 . T C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:41:18,23:0.560976:52,0,54 chr1 24187278 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:71:0,69:0.971831:53,35,0 chr1 24342177 . C G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:90:53,37:0.411111:40,0,53 chr1 24344974 . ACCCTCCACACCTGTGCC A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:109:28,81:0.743119:48,0,47 chr1 24379623 . G A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:13:8,5:0.384615:42,0,52 chr1 24379779 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:32,22:0.407407:47,0,60 chr1 24379802 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:38:26,12:0.315789:47,0,61 chr1 24383915 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:48:20,28:0.583333:53,0,53 chr1 24414863 . C T 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:37:16,21:0.567568:55,0,53 chr1 24453383 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:53:27,26:0.490566:51,0,54 chr1 24466127 . T A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:19:5,14:0.736842:55,0,54 chr1 24533277 . A C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:21:8,13:0.619048:51,0,52 chr1 24535214 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:152:84,68:0.447368:45,0,50 chr1 24601070 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:41:0,41:1:57,41,0 chr1 24652867 . C G 30.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:5:2,3:0.6:30,0,35 chr1 24660811 . G GT 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:23:12,10:0.434783:22,0,45 chr1 24663271 . G T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:21:0,21:1:52,36,0 chr1 24964519 . A T 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:111:70,40:0.36036:28,0,56 chr1 25243590 . T C 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:37:26,11:0.297297:36,0,47 chr1 25284544 . G C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:53:20,33:0.622642:43,0,49 chr1 25307714 . G A 28.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:128:84,44:0.34375:28,0,50 chr1 25321858 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:13:8,5:0.384615:47,0,54 chr1 25390874 . C G 35.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:76:50,26:0.342105:35,0,46 chr1 25419823 . G A 15 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:3:1,2:0.666667:14,0,18 chr1 25454398 . A ATG 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:84:37,47:0.559524:40,0,52 chr1 25454402 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:33,47:0.5875:47,0,53 chr1 25563141 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:90:0,90:1:56,42,0 chr1 25563181 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:59:29,30:0.508475:52,0,56 chr1 25563698 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:180:0,179:0.994444:52,40,0 chr1 25758557 . AG A 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:50:34,16:0.32:31,0,53 chr1 25771616 . G A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:18,16:0.470588:50,0,49 chr1 25782746 . A G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:26:14,12:0.461538:42,0,50 chr1 25783652 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:46:19,27:0.586957:57,0,53 chr1 25805163 . G A 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:144:77,67:0.465278:40,0,54 chr1 25811645 . C A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:57:30,27:0.473684:52,0,54 chr1 25811771 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:147:67,80:0.544218:50,0,50 chr1 25812646 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:45:24,20:0.444444:51,0,59 chr1 25814082 . C A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:85:47,38:0.447059:46,0,52 chr1 25826267 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:34:18,16:0.470588:48,0,62 chr1 25983903 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:41:0,41:1:46,40,0 chr1 26031165 . C A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:24:0,24:1:49,41,0 chr1 26032755 . T A 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:31:0,31:1:54,35,0 chr1 26161449 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:29:14,15:0.517241:56,0,61 chr1 26169964 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:20,15:0.428571:45,0,49 chr1 26171145 . G A 18.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:26:21,5:0.192308:18,0,49 chr1 26183845 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:84:44,39:0.464286:51,0,60 chr1 26184648 . G A 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:42:29,13:0.309524:38,0,63 chr1 26185209 . A G 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:43:0,43:1:60,47,0 chr1 26189465 . C A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:155:90,65:0.419355:48,0,51 chr1 26201372 . C T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:16,9:0.36:45,0,53 chr1 26202570 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:91:45,46:0.505495:48,0,50 chr1 26255600 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:95:55,40:0.421053:44,0,49 chr1 26282278 . C T 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:9:3,6:0.666667:39,0,44 chr1 26282291 . C T 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:16:9,7:0.4375:41,0,46 chr1 26282323 . A G 37.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:14:0,14:1:37,31,0 chr1 26282337 . G A 27.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:12:8,4:0.333333:27,0,56 chr1 26282398 . ACC A 15.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:39:17,11:0.282051:15,0,51 chr1 26282401 . GGGAC G 3.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:39:28,11:0.282051:1,0,47 chr1 26282602 . A T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:43:22,21:0.488372:55,0,62 chr1 26282768 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:121:70,51:0.421488:49,0,50 chr1 26282816 . G T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:68:0,68:1:60,52,0 chr1 26284400 . A C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:91:0,91:1:52,50,0 chr1 26285551 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:53:0,53:1:53,37,0 chr1 26294355 . C CA 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:29:1,28:0.965517:52,35,0 chr1 26300987 . T C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:104:0,104:1:58,44,0 chr1 26320235 . A G 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:71:0,71:1:59,52,0 chr1 26320239 . A G 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:74:0,74:1:59,53,0 chr1 26322060 . G C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:84:0,83:0.988095:56,40,0 chr1 26322335 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:22:12,10:0.454545:47,0,59 chr1 26328717 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:22,21:0.488372:54,0,63 chr1 26336413 . C T 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:48:25,23:0.479167:42,0,52 chr1 26336871 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:70:28,42:0.6:55,0,48 chr1 26343953 . G T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:67,40:0.373832:49,0,50 chr1 26344118 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:123:66,57:0.463415:49,0,63 chr1 26344261 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:153:86,67:0.437909:48,0,48 chr1 26344593 . G T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:70:27,43:0.614286:50,0,53 chr1 26344757 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:49:24,25:0.510204:49,0,54 chr1 26346585 . G A 61 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:67:25,42:0.626866:60,0,57 chr1 26346617 . C T 59 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:70:36,34:0.485714:59,0,71 chr1 26346729 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:31:16,15:0.483871:45,0,54 chr1 26354204 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:101:57,44:0.435644:47,0,55 chr1 26354815 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:16:10,6:0.375:56,0,57 chr1 26356517 . A C 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:57:36,21:0.368421:36,0,51 chr1 26363168 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:38:21,17:0.447368:51,0,55 chr1 26364683 . C A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:26,25:0.490196:48,0,56 chr1 26374304 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:50:0,50:1:58,44,0 chr1 26426501 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:13:0,13:1:48,30,0 chr1 26529971 . T G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:29:0,29:1:52,45,0 chr1 26543119 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:37:1,36:0.972973:50,33,0 chr1 26553429 . T C 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:28:0,28:1:59,42,0 chr1 26574244 . C G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:21:0,21:1:54,44,0 chr1 26993865 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:26:0,26:1:52,38,0 chr1 27007003 . G C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:19:9,10:0.526316:47,0,48 chr1 27100305 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:44:0,44:1:56,43,0 chr1 27100550 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:65:0,65:1:53,37,0 chr1 27283489 . T G 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:32:0,32:1:59,44,0 chr1 27334077 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:59:32,27:0.457627:44,0,57 chr1 27350434 . G A 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:122:71,51:0.418033:44,0,50 chr1 27350918 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:68:27,41:0.602941:55,0,56 chr1 27353306 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:72:28,44:0.611111:54,0,50 chr1 27353463 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:30,22:0.423077:50,0,53 chr1 27353801 . A G 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:95:60,35:0.368421:42,0,56 chr1 27356039 . C G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:87:48,39:0.448276:54,0,55 chr1 27357905 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:17,18:0.514286:51,0,60 chr1 27358617 . G A 58.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:37:14,23:0.621622:58,0,54 chr1 27359572 . G C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:60:0,60:1:57,38,0 chr1 27360875 . C G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:25,20:0.434783:47,0,55 chr1 27362142 . G A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:105:60,44:0.419048:43,0,48 chr1 27369520 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:10:0,10:1:49,24,0 chr1 27380011 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:25:0,25:1:55,44,0 chr1 27382530 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:50:0,50:1:54,34,0 chr1 27382554 . C T 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:59:0,59:1:59,42,0 chr1 27549313 . C T 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:95:1,94:0.989474:61,44,0 chr1 27549971 . C A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:60:34,26:0.433333:45,0,51 chr1 27615644 . T G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:55:25,30:0.545455:54,0,52 chr1 27666499 . C G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:13,15:0.535714:52,0,54 chr1 27668566 . G T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:28:0,28:1:55,46,0 chr1 27880077 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:33:17,16:0.484848:52,0,50 chr1 27882794 . A G 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:54:0,54:1:58,45,0 chr1 27882851 . T C 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:57:0,57:1:63,48,0 chr1 27882855 . A G 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:61:0,61:1:60,47,0 chr1 27935147 . T TG 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:36:16,20:0.555556:55,0,65 chr1 27942322 . C CG 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:76:53,22:0.289474:52,0,60 chr1 27942324 . A C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:53,22:0.293333:49,0,55 chr1 27955781 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:152:79,72:0.473684:45,0,46 chr1 27963720 . C G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:22:0,22:1:53,38,0 chr1 28228915 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:50,44,0 chr1 28229068 . C A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:17:7,10:0.588235:49,0,52 chr1 28236165 . A G 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:50:32,18:0.36:41,0,57 chr1 28237741 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:25:0,25:1:48,46,0 chr1 28237768 . A G 21.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:47:38,9:0.191489:21,0,44 chr1 28407482 . G T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:37:22,15:0.405405:49,0,65 chr1 28473868 . C A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:110:71,39:0.354545:44,0,52 chr1 28535124 . G A 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:59:38,21:0.355932:39,0,49 chr1 28690203 . G GT 7.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:25:12,4:0.16:6,0,9 chr1 28812463 . G T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:59:0,59:1:50,33,0 chr1 28812628 . C G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:17,24:0.585366:49,0,48 chr1 28863085 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:44,38:0.463415:47,0,54 chr1 28893758 . A C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:152:84,67:0.440789:52,0,58 chr1 29115779 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:62:37,25:0.403226:43,0,52 chr1 29117163 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:53:25,28:0.528302:57,0,59 chr1 29117211 . A G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:67:0,67:1:59,54,0 chr1 29118032 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:41:16,25:0.609756:51,0,45 chr1 29119002 . C A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:76:45,31:0.407895:47,0,55 chr1 29119820 . AT A 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:38:0,38:1:53,51,0 chr1 29148829 . C T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:194:0,194:1:58,48,0 chr1 29148882 . C G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:157:0,156:0.993631:57,46,0 chr1 29149136 . T G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:70:0,70:1:53,40,0 chr1 29200633 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:69:36,33:0.478261:47,0,55 chr1 29201900 . G C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:17,15:0.46875:53,0,63 chr1 29203187 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:110:1,108:0.981818:56,43,0 chr1 29216125 . A G 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:158:0,158:1:61,47,0 chr1 29230712 . C T 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:114:0,113:0.991228:62,45,0 chr1 29279134 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:16,14:0.466667:49,0,57 chr1 29305397 . A G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:123:81,42:0.341463:44,0,49 chr1 29310806 . G A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:99:60,39:0.393939:48,0,57 chr1 29323362 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:23,14:0.378378:46,0,55 chr1 29325556 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:39:16,22:0.564103:53,0,50 chr1 30715242 . C T 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:126:82,44:0.349206:40,0,56 chr1 30716054 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:106:58,48:0.45283:52,0,53 chr1 30723408 . G A 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:12:8,4:0.333333:31,0,47 chr1 30742517 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:77:43,33:0.428571:51,0,57 chr1 30873352 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:95:47,47:0.494737:47,0,53 chr1 30876800 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:84:46,38:0.452381:50,0,55 chr1 30878666 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:65:39,26:0.4:49,0,56 chr1 30878882 . G A 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:58:38,20:0.344828:40,0,51 chr1 31267821 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:27:0,27:1:55,37,0 chr1 31291866 . C CAAG 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:23:0,23:1:44,33,0 chr1 31424646 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:20:0,20:1:52,37,0 chr1 31425285 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:23:0,23:1:54,45,0 chr1 31425315 . C T 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:43:0,43:1:61,46,0 chr1 31425387 . T C 65.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:72:0,72:1:65,45,0 chr1 31425432 . A C 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:43:0,43:1:62,51,0 chr1 31426837 . A T 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,31:0.96875:50,39,0 chr1 31426857 . C T 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:18:0,17:0.944444:48,41,0 chr1 31433042 . A ACAG 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:109:5,103:0.944954:50,39,0 chr1 31434035 . A G 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:55:0,55:1:61,47,0 chr1 31619303 . C T 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:86:51,35:0.406977:34,0,49 chr1 31626924 . A G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:103:56,47:0.456311:56,0,61 chr1 31630664 . A G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:77:43,34:0.441558:41,0,53 chr1 31653830 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:46:19,27:0.586957:51,0,60 chr1 31662310 . C T 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:67:51,16:0.238806:38,0,52 chr1 31662352 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:105:82,23:0.219048:44,0,58 chr1 31662682 . C G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:68:28,40:0.588235:48,0,54 chr1 31665562 . C G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:137:77,59:0.430657:51,0,51 chr1 31668136 . C T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:23:14,9:0.391304:46,0,52 chr1 31668890 . C G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:60:19,41:0.683333:53,0,41 chr1 31670567 . G C 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/0:35:49:1,19:0.387755:61,37,60 chr1 31670567 . G T 61.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:49:1,29:0.591837:61,37,56 chr1 31679408 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:20:0,20:1:49,42,0 chr1 31682970 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:54:0,54:1:51,43,0 chr1 31690328 . G A 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:37:0,37:1:59,45,0 chr1 31691268 . A T 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:48:0,48:1:59,46,0 chr1 31692773 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:59:0,59:1:57,48,0 chr1 31698605 . T G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:56:0,56:1:52,35,0 chr1 31699894 . G T 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:116:1,115:0.991379:59,47,0 chr1 31728046 . T C 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:166:0,166:1:61,51,0 chr1 31800425 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:22:10,12:0.545455:56,0,57 chr1 31814028 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:90:48,41:0.455556:51,0,54 chr1 31815009 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:74:46,28:0.378378:45,0,58 chr1 32075839 . G GGT 15.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:33:10,23:0.69697:15,0,29 chr1 32192461 . G GGT 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:41:20,21:0.512195:49,0,56 chr1 32206796 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:19:9,10:0.526316:54,0,62 chr1 32216957 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:60:32,28:0.466667:51,0,54 chr1 32366691 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:33:12,21:0.636364:50,0,49 chr1 32668367 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:43:1,42:0.976744:44,35,0 chr1 32669173 . A C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:39:1,38:0.974359:58,42,0 chr1 32669388 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:21:0,21:1:58,41,0 chr1 32672915 . A C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:20:0,20:1:49,39,0 chr1 32695277 . C T 62.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:82:0,82:1:62,42,0 chr1 32695611 . T C 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:99:0,99:1:62,47,0 chr1 32770025 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:23,23:0.5:55,0,58 chr1 32770050 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:50:31,19:0.38:54,0,54 chr1 32780201 . C G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:124:68,56:0.451613:50,0,51 chr1 32791283 . C A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:15,11:0.423077:47,0,60 chr1 32817174 . C A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:59:31,28:0.474576:45,0,51 chr1 32853033 . G A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:32:0,32:1:60,48,0 chr1 32864831 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:39:0,39:1:53,40,0 chr1 33031469 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:20:0,20:1:50,44,0 chr1 33094737 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:55:0,55:1:55,39,0 chr1 33159674 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:29:14,15:0.517241:50,0,59 chr1 33165468 . C A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:73:0,72:0.986301:46,32,0 chr1 33276186 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:92:47,44:0.478261:52,0,45 chr1 33276627 . T C 35 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:7:0,7:1:34,16,0 chr1 33295142 . T C 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:94:1,93:0.989362:61,44,0 chr1 33312625 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:52:23,29:0.557692:53,0,55 chr1 33354432 . C T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:104:49,55:0.528846:56,0,50 chr1 33367264 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:31,26:0.45614:50,0,49 chr1 33479591 . T A 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:30,34:0.53125:42,0,51 chr1 33491530 . C A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:70:35,35:0.5:52,0,50 chr1 33491552 . T G 63.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:59:81:0,81:1:63,60,0 chr1 33494462 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:82:40,42:0.512195:50,0,54 chr1 33537145 . CG C 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:34:22,12:0.352941:36,0,57 chr1 33542697 . A G 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:29:19,10:0.344828:36,0,54 chr1 33557880 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:93:48,45:0.483871:52,0,54 chr1 33559328 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:90:46,44:0.488889:54,0,58 chr1 33559430 . A G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:105:57,48:0.457143:43,0,52 chr1 33572614 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:32,35:0.514706:50,0,49 chr1 33625151 . T A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:130:0,128:0.984615:58,45,0 chr1 33646703 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:149:0,149:1:59,42,0 chr1 33692882 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:43:26,17:0.395349:52,0,55 chr1 33772682 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:114:62,52:0.45614:51,0,50 chr1 33804897 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:57:26,31:0.54386:54,0,51 chr1 33819741 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:78:55,23:0.294872:52,0,62 chr1 33819780 . C T 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:89:65,24:0.269663:39,0,57 chr1 33820588 . A C 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:25:16,8:0.32:13,0,44 chr1 33864296 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:0,58:1:56,43,0 chr1 33864466 . A C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:121:73,48:0.396694:46,0,56 chr1 34197579 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:67:46,21:0.313433:47,0,54 chr1 34197607 . C G 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:72:52,20:0.277778:31,0,59 chr1 34197810 . C G 29 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:90:60,30:0.333333:28,0,48 chr1 34202262 . C A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:57:28,29:0.508772:41,0,54 chr1 35095909 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:9:0,9:1:36,19,0 chr1 35097364 . G A 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:26:0,26:1:58,46,0 chr1 35097605 . C G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:19:0,19:1:55,38,0 chr1 35460260 . C A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:14:0,14:1:49,36,0 chr1 35738119 . T A 20.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:27:2,25:0.925926:19,3,0 chr1 35738121 . T A 27.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:32:14,17:0.53125:27,0,20 chr1 35739565 . A G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:32:0,32:1:51,41,0 chr1 35748111 . G T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:20:0,20:1:58,38,0 chr1 35751234 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,32:0.969697:50,41,0 chr1 35850817 . C CA 42.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:21:5,14:0.666667:42,25,0 chr1 35850970 . A C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:95:0,95:1:57,47,0 chr1 36088072 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:63:1,62:0.984127:51,35,0 chr1 36088235 . A C 33.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:9:6,3:0.333333:33,0,55 chr1 36097557 . C A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:65:0,65:1:50,35,0 chr1 36100016 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:27:0,27:1:57,42,0 chr1 36137342 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:32:0,32:1:58,41,0 chr1 36176819 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:116:64,51:0.439655:48,0,48 chr1 36286551 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:100:55,44:0.44:52,0,59 chr1 36286832 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:67:0,66:0.985075:55,36,0 chr1 36296795 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:31:0,31:1:52,41,0 chr1 36307804 . T G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:34,34:0.5:46,0,51 chr1 36308218 . C G 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:71:0,71:1:58,48,0 chr1 36321693 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:43:0,42:0.976744:52,39,0 chr1 36322287 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:15,14:0.482759:48,0,52 chr1 36322755 . A G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:33:0,33:1:55,39,0 chr1 36358720 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:29,25:0.462963:48,0,58 chr1 36422101 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:50:27,23:0.46:49,0,54 chr1 36455770 . G T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:33:16,17:0.515152:58,0,58 chr1 36455807 . G A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:82:40,42:0.512195:57,0,59 chr1 36457893 . G C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:69:36,33:0.478261:52,0,50 chr1 36462132 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:18:0,18:1:53,38,0 chr1 36471458 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:93:53,40:0.430108:57,0,56 chr1 36471464 . A G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:102:56,46:0.45098:59,0,57 chr1 36475938 . G GT 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:141:81,59:0.41844:33,0,55 chr1 36859082 . A C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:20,15:0.428571:48,0,56 chr1 36859876 . A C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:77:51,26:0.337662:47,0,54 chr1 36859997 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:21,29:0.58:47,0,48 chr1 37493849 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:67:34,33:0.492537:47,0,50 chr1 37540758 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:32,30:0.483871:46,0,54 chr1 37565095 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:55:32,23:0.418182:50,0,54 chr1 37581319 . G T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:25,21:0.456522:51,0,54 chr1 37583951 . C G 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:54:37,17:0.314815:38,0,49 chr1 37587266 . C CA 18.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:25:9,9:0.36:18,0,51 chr1 37683093 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:22:0,22:1:52,38,0 chr1 37683404 . G A 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:74:48,25:0.337838:41,0,50 chr1 37689593 . G C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:37:21,16:0.432432:46,0,51 chr1 37690169 . A T 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:20:12,7:0.35:42,0,58 chr1 37718644 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:61:28,33:0.540984:51,0,57 chr1 37718798 . C G 30.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:84:53,31:0.369048:30,0,48 chr1 37720517 . C T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:90:44,46:0.511111:54,0,59 chr1 37721775 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:41:23,18:0.439024:47,0,53 chr1 37722317 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:55,36:0.395604:50,0,51 chr1 37723169 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:68:32,36:0.529412:51,0,57 chr1 37761414 . A T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:97:47,47:0.484536:54,0,56 chr1 37799981 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:127:64,63:0.496063:53,0,51 chr1 37806988 . G A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:37,24:0.393443:43,0,54 chr1 37823711 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:58:38,20:0.344828:49,0,60 chr1 37838797 . CTT C 5.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:7:1,3:0.428571:3,8,0 chr1 37862310 . G T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:33:0,33:1:55,47,0 chr1 37868645 . T A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:37:21,16:0.432432:52,0,69 chr1 37868646 . C A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:21,16:0.432432:49,0,64 chr1 37873123 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:51:0,51:1:52,45,0 chr1 37880224 . A C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:20:0,20:1:49,40,0 chr1 37931669 . G A 63.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:79:0,79:1:63,47,0 chr1 37931697 . C T 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:83:0,83:1:60,44,0 chr1 37945773 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:116:67,49:0.422414:54,0,47 chr1 37958181 . G C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,37:1:57,44,0 chr1 37960223 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:99:0,99:1:55,41,0 chr1 37976875 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:21:0,21:1:53,35,0 chr1 37984695 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:46:0,46:1:48,32,0 chr1 37998967 . C G 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:51:0,51:1:58,43,0 chr1 38017624 . AT A 6.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:10:3,5:0.5:5,0,40 chr1 38859391 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:19:0,19:1:47,38,0 chr1 38874610 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:30:0,30:1:56,33,0 chr1 38886599 . G T 61.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:56:0,56:1:61,41,0 chr1 38895943 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:25:0,25:1:57,49,0 chr1 38991334 . C T 26.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:3:1,2:0.666667:26,0,34 chr1 39084311 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:52:29,22:0.423077:48,0,58 chr1 39251894 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:45:0,45:1:49,40,0 chr1 39300369 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:58:28,30:0.517241:46,0,53 chr1 39331172 . CTT C 15.8 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:27:13,5:0.185185:12,3,15 chr1 39331172 . CT C 15.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:27:13,5:0.185185:12,9,3 chr1 39331383 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:80:51,29:0.3625:49,0,62 chr1 39334240 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:54:34,20:0.37037:45,0,52 chr1 39336009 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:52:28,24:0.461538:48,0,60 chr1 39336143 . A C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:36,25:0.409836:44,0,50 chr1 39340938 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:41:0,41:1:51,36,0 chr1 39346948 . G T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:18:0,17:0.944444:49,31,0 chr1 39347150 . C A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:58:0,58:1:53,40,0 chr1 39349471 . T A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:32:14,18:0.5625:53,0,57 chr1 39349672 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:26:10,16:0.615385:53,0,51 chr1 39357360 . A AT 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:37:19,14:0.378378:33,0,57 chr1 39370145 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:46,45:0.494505:49,0,54 chr1 39372502 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:39:22,17:0.435897:45,0,55 chr1 39413143 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:63:31,32:0.507937:53,0,54 chr1 39413694 . T C 31 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:52:0,51:0.980769:31,33,0 chr1 39424005 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:13:0,13:1:51,34,0 chr1 39427421 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:25:0,25:1:57,43,0 chr1 39429788 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:14:0,14:1:51,37,0 chr1 39442834 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:40:0,40:1:57,41,0 chr1 39447679 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:42:17,23:0.547619:54,0,54 chr1 39448691 . G C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:62:0,62:1:49,42,0 chr1 39452216 . C A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:44:19,25:0.568182:53,0,45 chr1 39461835 . G A 12.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:9:5,4:0.444444:12,0,44 chr1 39492124 . C G 7.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:2:0,2:1:5,5,0 chr1 39492241 . A G 19.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:22:13,8:0.363636:19,0,37 chr1 39511903 . C T 29.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:22:0,22:1:29,21,0 chr1 39570014 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:44:22,22:0.5:52,0,56 chr1 39571272 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:126:84,41:0.325397:41,0,43 chr1 39632656 . T C 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:76:0,76:1:60,55,0 chr1 39683970 . G T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:19,21:0.525:51,0,47 chr1 39684198 . C G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:9,9:0.5:49,0,60 chr1 39760431 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:88:44,44:0.5:46,0,54 chr1 39763647 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:19:6,13:0.684211:51,0,57 chr1 39764859 . C T 34.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:163:1,161:0.98773:34,25,0 chr1 39770402 . A C 38.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:38,32,0 chr1 39788114 . C T 24.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:5:0,5:1:24,26,0 chr1 39788162 . G A 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:11:5,6:0.545455:34,0,45 chr1 39883459 . G A 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:77:0,77:1:60,45,0 chr1 39897382 . G C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:50:0,50:1:55,40,0 chr1 39901920 . A G 28.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:11:0,11:1:28,17,0 chr1 40067594 . T G 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:117:0,117:1:59,51,0 chr1 40067615 . T G 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:101:1,100:0.990099:60,48,0 chr1 40067643 . T G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:100:0,100:1:42,42,0 chr1 40067648 . T G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:102:1,101:0.990196:45,45,0 chr1 40067654 . T G 39.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:105:0,105:1:39,43,0 chr1 40067675 . T G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:109:0,109:1:46,42,0 chr1 40070402 . C CT 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:43:1,41:0.953488:60,44,0 chr1 40082234 . G C 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:61:53,8:0.131148:35,0,49 chr1 40082278 . C T 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:61:49,12:0.196721:36,0,42 chr1 40270145 . T G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:36:25,11:0.305556:40,0,58 chr1 40271844 . T G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:15:0,15:1:46,31,0 chr1 40307451 . G C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:27,40:0.597015:57,0,51 chr1 40374681 . A G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:177:118,59:0.333333:41,0,54 chr1 40414136 . G T 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:81:0,81:1:59,48,0 chr1 40415369 . C G 28.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:57:41,16:0.280702:28,0,50 chr1 40457325 . T G 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:28:19,9:0.321429:36,0,55 chr1 40457347 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:38:0,38:1:53,52,0 chr1 40514887 . G A 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:57:33,24:0.421053:37,0,49 chr1 40515059 . G T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:50:0,49:0.98:51,34,0 chr1 40533139 . A G 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:30:17,13:0.433333:37,0,45 chr1 40533230 . A G 36.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:17:8,9:0.529412:36,0,44 chr1 40541731 . T A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:31:13,18:0.580645:46,0,51 chr1 40547343 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:13,16:0.551724:47,0,61 chr1 40635900 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:53,51:0.490385:48,0,53 chr1 40641688 . T C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:43:26,17:0.395349:41,0,54 chr1 40738897 . C T 32.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:68:46,22:0.323529:32,0,56 chr1 40758336 . C T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:17:10,7:0.411765:43,0,51 chr1 40784341 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:112:61,51:0.455357:47,0,54 chr1 40818694 . G C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:72:35,37:0.513889:60,0,62 chr1 40819415 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:162:78,83:0.512346:57,0,54 chr1 40819499 . C A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:47:24,23:0.489362:46,0,64 chr1 40831156 . T G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:112:69,43:0.383929:42,0,47 chr1 40832980 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:35:0,35:1:53,39,0 chr1 40987614 . GT G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:36:0,36:1:52,37,0 chr1 41009413 . A G 63.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:72:0,72:1:63,51,0 chr1 41017846 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:99:51,48:0.484848:47,0,50 chr1 41028550 . G T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:29:0,29:1:57,45,0 chr1 41075181 . A T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:0,31:1:56,43,0 chr1 41075189 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:35:0,35:1:56,48,0 chr1 41484641 . T C 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:116:0,116:1:60,50,0 chr1 41510657 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:47:0,47:1:55,50,0 chr1 41510704 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:70:39,31:0.442857:45,0,56 chr1 41512895 . T G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:64:0,64:1:58,45,0 chr1 41513154 . C G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:68:0,68:1:54,39,0 chr1 41513485 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:45:0,45:1:55,47,0 chr1 41537350 . C T 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:6:3,3:0.5:35,0,42 chr1 41557121 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:57:0,57:1:55,41,0 chr1 41557204 . A C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:29:16,13:0.448276:49,0,59 chr1 41580942 . G T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:60:32,28:0.466667:44,0,45 chr1 41581141 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:107:7,100:0.934579:51,42,0 chr1 41583074 . T C 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:125:0,125:1:61,48,0 chr1 41583361 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:103:0,103:1:53,39,0 chr1 41583469 . C G 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:71:0,71:1:58,46,0 chr1 41584695 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:92:55,37:0.402174:46,0,60 chr1 41628827 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:79:0,79:1:49,40,0 chr1 42153468 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:90:47,43:0.477778:53,0,59 chr1 42163369 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:23:0,23:1:50,39,0 chr1 42164693 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:115:71,44:0.382609:41,0,45 chr1 42191525 . T G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:190:109,81:0.426316:53,0,54 chr1 42227926 . A G 46 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:61:0,61:1:45,41,0 chr1 42280304 . G C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:16:0,16:1:44,29,0 chr1 42381115 . G C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:38:0,38:1:52,41,0 chr1 42399607 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:36:18,18:0.5:54,0,56 chr1 42414845 . T C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:59:0,59:1:56,45,0 chr1 42433172 . A G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:58,46:0.442308:49,0,52 chr1 42539333 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:22:13,9:0.409091:48,0,53 chr1 42659188 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:73:36,37:0.506849:49,0,52 chr1 42735184 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:67:24,43:0.641791:51,0,50 chr1 42747828 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:76:35,41:0.539474:48,0,53 chr1 42762518 . T A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:79:0,79:1:60,49,0 chr1 42830502 . C T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:153:87,65:0.424837:44,0,57 chr1 42830524 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:112:64,47:0.419643:47,0,57 chr1 42834992 . T C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:27:0,26:0.962963:49,37,0 chr1 42926579 . C G 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:29:12,17:0.586207:50,0,61 chr1 42927574 . G GGGTGAGAAAT 59.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:113:57,49:0.433628:59,0,64 chr1 42929964 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:198:110,86:0.434343:44,0,55 chr1 42930743 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:105:49,56:0.533333:46,0,50 chr1 42952355 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:60:0,60:1:57,43,0 chr1 43186698 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:26:0,26:1:45,35,0 chr1 43197705 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:41:0,41:1:53,42,0 chr1 43206965 . T G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:32:0,32:1:50,38,0 chr1 43209796 . G A 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:75:0,75:1:59,45,0 chr1 43234264 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:39:0,39:1:58,46,0 chr1 43234469 . A G 63.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:64:0,64:1:63,46,0 chr1 43305345 . TA T 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:93:53,40:0.430108:40,0,54 chr1 43306869 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:91:41,50:0.549451:51,0,57 chr1 43308824 . G C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:50:25,25:0.5:50,0,58 chr1 43312181 . C T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:26:0,26:1:55,41,0 chr1 43313893 . T C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:114:56,57:0.5:52,0,59 chr1 43317175 . G A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:16:9,7:0.4375:43,0,48 chr1 43319285 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:52:30,22:0.423077:46,0,50 chr1 43338669 . G A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:121:60,61:0.504132:52,0,55 chr1 43346404 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:58:33,25:0.431034:54,0,57 chr1 43349193 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:66:33,32:0.484848:50,0,49 chr1 43359973 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:66:31,35:0.530303:52,0,51 chr1 43360428 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:31,23:0.425926:48,0,58 chr1 43360641 . C A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:21,29:0.58:49,0,52 chr1 43367703 . T A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:33:19,14:0.424242:43,0,47 chr1 43420823 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:141:87,54:0.382979:46,0,52 chr1 43422931 . G A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:45:29,16:0.355556:40,0,51 chr1 43426518 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:46,36:0.439024:51,0,49 chr1 43435340 . A C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:41:21,19:0.463415:48,0,50 chr1 43437918 . G T 23.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:44:28,16:0.363636:23,0,49 chr1 43441225 . A G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:32,24:0.428571:46,0,51 chr1 43443594 . T C 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:98:0,98:1:64,48,0 chr1 43446919 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:82:47,35:0.426829:48,0,59 chr1 43450971 . T C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:64:35,29:0.453125:49,0,55 chr1 43451738 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:67:27,40:0.597015:54,0,42 chr1 43451966 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:28,22:0.44:50,0,52 chr1 43453742 . A G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:47:24,23:0.489362:43,0,48 chr1 43569681 . C T 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:126:75,51:0.404762:40,0,51 chr1 43578797 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:33,24:0.421053:45,0,57 chr1 43591586 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:20:8,12:0.6:49,0,57 chr1 43591997 . G T 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:16:12,4:0.25:35,0,56 chr1 43592594 . C A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:78:32,46:0.589744:46,0,37 chr1 43605550 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:106:55,51:0.481132:50,0,47 chr1 43606347 . C T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:94:62,32:0.340426:44,0,59 chr1 43606395 . C T 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:88:62,26:0.295455:37,0,53 chr1 43613740 . T C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:27:17,10:0.37037:44,0,50 chr1 43617439 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:76:38,38:0.5:49,0,55 chr1 43617836 . T C 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:108:65,42:0.388889:43,0,62 chr1 43617848 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:112:72,40:0.357143:51,0,61 chr1 43619068 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:82:40,42:0.512195:51,0,48 chr1 43620409 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:29:13,16:0.551724:50,0,54 chr1 43621160 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:147:83,63:0.428571:43,0,51 chr1 43660291 . CA C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:31:15,16:0.516129:41,0,55 chr1 43671586 . C A 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:56:34,22:0.392857:35,0,57 chr1 43920943 . A G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:43:0,43:1:60,46,0 chr1 43921556 . T G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:162:0,162:1:58,40,0 chr1 43930114 . C T 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:140:0,140:1:59,44,0 chr1 43935712 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:49:0,49:1:56,48,0 chr1 43949743 . C T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:108:0,108:1:60,43,0 chr1 43956950 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:21,21:0.5:52,0,57 chr1 43960353 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:103:0,103:1:55,43,0 chr1 43961276 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:60:0,60:1:56,39,0 chr1 43966828 . C G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:64:0,64:1:56,42,0 chr1 43976849 . A C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:47:0,47:1:55,39,0 chr1 43985441 . GGA G 9.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:14:2,12:0.857143:6,2,0 chr1 43991633 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:73:1,70:0.958904:51,35,0 chr1 43992067 . T TC 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:75:1,74:0.986667:60,50,0 chr1 44129441 . G C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:87:48,39:0.448276:50,0,49 chr1 44129738 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:45:31,14:0.311111:56,0,60 chr1 44129754 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:44:30,14:0.318182:56,0,66 chr1 44130707 . CCAA C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:73:37,36:0.493151:44,0,59 chr1 44137834 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:55:20,35:0.636364:52,0,49 chr1 44139071 . A ATAT 21.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:61:47,14:0.229508:21,0,46 chr1 44139082 . A G 6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:67:52,15:0.223881:4,0,45 chr1 44139334 . G A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:103:63,40:0.38835:44,0,41 chr1 44140893 . A G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:85:49,36:0.423529:51,0,48 chr1 44213884 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:14,26:0.65:51,0,50 chr1 44219992 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:39:23,16:0.410256:46,0,63 chr1 44220650 . T C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:46:22,23:0.5:43,0,55 chr1 44322726 . A T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:17:0,17:1:50,32,0 chr1 44782006 . TAC T 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:13:8,5:0.384615:43,0,64 chr1 44784335 . C G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:51:27,24:0.470588:47,0,57 chr1 44802710 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:30:15,15:0.5:55,0,56 chr1 44806156 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:27,17:0.386364:45,0,48 chr1 44810755 . G A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:52:21,31:0.596154:58,0,54 chr1 44814044 . G C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:12,9:0.428571:46,0,59 chr1 44827194 . G A 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:86:55,31:0.360465:37,0,53 chr1 44827846 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:73:29,43:0.589041:53,0,61 chr1 44828484 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:46:18,28:0.608696:53,0,53 chr1 44841834 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:37:18,19:0.513514:49,0,51 chr1 44874610 . C T 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:57:43,14:0.245614:36,0,54 chr1 44879774 . T A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:42,27:0.391304:46,0,56 chr1 44897320 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:28,19:0.404255:48,0,53 chr1 44986555 . G C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:59:31,28:0.474576:46,0,53 chr1 45007644 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:13:0,13:1:49,30,0 chr1 45020600 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:22:0,22:1:49,36,0 chr1 45039048 . G C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:58,44,0 chr1 45330228 . CAA C 15.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:63:4,25:0.396825:15,17,0 chr1 45330597 . G C 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:74:0,74:1:62,55,0 chr1 45332883 . T C 63.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:109:0,109:1:63,49,0 chr1 45339894 . G C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:60:0,60:1:58,40,0 chr1 45499635 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:34:0,34:1:52,36,0 chr1 45507763 . A AT 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:42:0,42:1:44,44,0 chr1 45508256 . G A 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:150:0,150:1:58,45,0 chr1 45510915 . A G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:37:0,37:1:55,45,0 chr1 45515840 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:23:0,23:1:54,42,0 chr1 45607817 . G A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:102:64,38:0.372549:45,0,54 chr1 45613182 . A G 30.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:5:0,5:1:29,6,0 chr1 45613212 . C T 34.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:6:0,6:1:34,8,0 chr1 45615275 . A C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:26:0,26:1:51,34,0 chr1 45616288 . C T 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:46:0,46:1:61,42,0 chr1 45618034 . C G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:36:21,15:0.416667:46,0,53 chr1 45620405 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:15:0,15:1:45,23,0 chr1 45621241 . C T 65.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:65,38,0 chr1 45621905 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,33:1:54,41,0 chr1 45622207 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:54,44,0 chr1 45623553 . C G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:49:0,49:1:55,41,0 chr1 45658991 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:48:18,30:0.625:52,0,53 chr1 45913846 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:92:51,41:0.445652:51,0,51 chr1 45932269 . A G 20.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:29:23,6:0.206897:20,0,50 chr1 46010915 . T G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:26,20:0.434783:50,0,56 chr1 46027788 . T G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:50:32,18:0.36:43,0,57 chr1 46031037 . A G 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:27:0,27:1:61,52,0 chr1 46032703 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:60:0,60:1:48,37,0 chr1 46034941 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:106:62,44:0.415094:47,0,40 chr1 46043651 . C A 3.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:14:8,6:0.428571:1,0,48 chr1 46055845 . G A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:36:0,36:1:58,51,0 chr1 46055887 . A T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:27:0,27:1:56,41,0 chr1 46189486 . T C 65.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:145:0,145:1:65,54,0 chr1 46302736 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:32:0,32:1:55,43,0 chr1 46340808 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:31:18,13:0.419355:49,0,60 chr1 46340878 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:60:38,22:0.366667:47,0,59 chr1 46342025 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:104:69,35:0.336538:48,0,49 chr1 46342552 . A C 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:87:45,42:0.482759:53,0,58 chr1 46342754 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:43:21,22:0.511628:58,0,79 chr1 46342790 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:76:40,35:0.460526:55,0,66 chr1 46342996 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:69:42,27:0.391304:52,0,65 chr1 46343023 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:76:47,29:0.381579:54,0,60 chr1 46343180 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:65:42,23:0.353846:58,0,60 chr1 46343188 . C T 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:62:42,20:0.322581:57,0,59 chr1 46343353 . G T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:137:93,44:0.321168:44,0,53 chr1 46343649 . C G 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:138:81,57:0.413043:33,0,53 chr1 46343747 . A G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:128:84,44:0.34375:41,0,53 chr1 46344858 . A G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:118:63,55:0.466102:54,0,52 chr1 46344998 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:136:87,47:0.345588:51,0,55 chr1 46345170 . C T 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:47:33,14:0.297872:33,0,55 chr1 46352836 . T C 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:30:18,12:0.4:40,0,61 chr1 46361542 . A C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:29:0,29:1:49,38,0 chr1 46361813 . C T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:75:31,44:0.586667:47,0,41 chr1 46394565 . G A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:7:2,5:0.714286:31,0,43 chr1 46406314 . T C 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:139:0,139:1:62,46,0 chr1 46533348 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:41:21,19:0.463415:48,0,55 chr1 46547692 . T C 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:87:0,87:1:64,56,0 chr1 46549149 . A AAAAAG 30.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:76:4,52:0.684211:28,0,3 chr1 46643156 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:28:0,28:1:57,44,0 chr1 46668139 . T C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:42:0,41:0.97619:47,39,0 chr1 46930301 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:80:0,80:1:53,38,0 chr1 46933071 . G C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:51:0,51:1:46,36,0 chr1 46934387 . A G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:29:0,29:1:41,45,0 chr1 46936815 . TTGTG T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:50:4,44:0.88:44,29,0 chr1 47142179 . A T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:80:52,28:0.35:42,0,46 chr1 47225896 . GCAGA G 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:34:0,33:0.970588:46,38,0 chr1 47228495 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:100:0,100:1:56,38,0 chr1 47251517 . A G 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:61:40,21:0.344262:35,0,56 chr1 47260415 . T C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:76:44,32:0.421053:46,0,59 chr1 47269608 . T C 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:10:5,5:0.5:45,0,54 chr1 47280441 . T C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:115:70,45:0.391304:38,0,47 chr1 47302242 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:75:44,30:0.4:46,0,58 chr1 47314279 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:89:46,43:0.483146:51,0,52 chr1 47333967 . G C 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:64:27,36:0.5625:41,0,43 chr1 47376759 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:22:0,22:1:51,34,0 chr1 47416302 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:34:17,17:0.5:54,0,57 chr1 47416825 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:26:13,13:0.5:43,0,53 chr1 47438996 . T TCCGCAC 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:11:0,8:0.727273:47,26,0 chr1 47439237 . G C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:17:0,17:1:42,30,0 chr1 47775419 . G T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:68:41,27:0.397059:44,0,47 chr1 47777817 . T C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:67:39,27:0.402985:47,0,46 chr1 48229409 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:125:70,55:0.44:54,0,55 chr1 48232061 . T G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:75:0,75:1:55,49,0 chr1 48232079 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:78:41,37:0.474359:53,0,59 chr1 48235895 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:58:33,25:0.431034:46,0,58 chr1 48242556 . G T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:128:76,52:0.40625:49,0,45 chr1 48298747 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:67:42,25:0.373134:47,0,57 chr1 48472019 . A T 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:73:44,28:0.383562:40,0,42 chr1 48591023 . T C 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:23:11,12:0.521739:46,0,47 chr1 48758912 . G T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:49:0,49:1:53,39,0 chr1 48865021 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:15:0,15:1:43,27,0 chr1 48865132 . C A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:26:0,26:1:49,39,0 chr1 50179506 . A T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:42:24,18:0.428571:44,0,55 chr1 50195739 . C T 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:90:0,90:1:57,44,0 chr1 50200843 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:26:0,26:1:47,35,0 chr1 50490540 . C CAAATACAGTGG 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:39:0,32:0.820513:50,46,0 chr1 50491837 . A T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:24:0,22:0.916667:56,38,0 chr1 50584664 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:25:10,15:0.6:56,0,58 chr1 51102258 . A G 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:22:15,7:0.318182:42,0,47 chr1 51301680 . G A 29.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:92:60,32:0.347826:29,0,43 chr1 51301760 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:35:14,21:0.6:57,0,50 chr1 51312076 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:32:16,16:0.5:44,0,56 chr1 51361249 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:44,29:0.391892:46,0,52 chr1 51408279 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:77:42,34:0.441558:49,0,55 chr1 51447892 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:19:9,10:0.526316:51,0,65 chr1 51447900 . T TA 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:8,11:0.578947:56,0,49 chr1 51463832 . TA T 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:17:11,6:0.352941:42,0,51 chr1 51472967 . G A 13.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:37:29,7:0.189189:13,0,45 chr1 51798392 . A G 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:68:37,31:0.455882:42,0,48 chr1 51800570 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:73:48,25:0.342466:39,0,61 chr1 51825312 . T G 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:25:17,8:0.32:37,0,58 chr1 51827898 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:53,44,0 chr1 51840391 . ATCT A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:128:54,74:0.578125:42,0,54 chr1 51937284 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:24:0,24:1:54,47,0 chr1 52023595 . CAG C 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:37:18,19:0.513514:55,0,74 chr1 52032698 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:51:25,26:0.509804:44,0,56 chr1 52033189 . A T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:30,29:0.491525:48,0,52 chr1 52373320 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:124:58,66:0.532258:56,0,51 chr1 52602421 . G T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:46:0,46:1:53,44,0 chr1 52606782 . T C 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:170:0,170:1:60,49,0 chr1 52632886 . A C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:133:0,133:1:60,46,0 chr1 52633013 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:55:0,55:1:55,41,0 chr1 52648431 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:57:0,57:1:53,40,0 chr1 52648552 . C A 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:54:0,54:1:57,49,0 chr1 52648567 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:43:0,43:1:52,42,0 chr1 52648588 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:22:0,22:1:52,34,0 chr1 52648646 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:8:0,8:1:39,17,0 chr1 52784978 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:77:0,77:1:51,38,0 chr1 52854602 . G T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:93:50,43:0.462366:46,0,49 chr1 52921543 . G A 31.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:9:6,3:0.333333:31,0,49 chr1 52988011 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:21:16,5:0.238095:49,0,62 chr1 52988042 . G T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:39:29,10:0.25641:49,0,57 chr1 53062276 . T G 23.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:58:47,11:0.189655:23,0,47 chr1 53069827 . C T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:66:28,38:0.575758:56,0,58 chr1 53077640 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:33:1,32:0.969697:52,34,0 chr1 53078906 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:52:1,51:0.980769:55,38,0 chr1 53078925 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:43:0,43:1:57,46,0 chr1 53088030 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:34:0,34:1:55,37,0 chr1 53088861 . A AT 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:56:2,54:0.964286:54,40,0 chr1 53090953 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:21,21:0.5:46,0,53 chr1 53103308 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:13:0,13:1:47,25,0 chr1 53134406 . A G 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:56:37,18:0.321429:37,0,51 chr1 53210776 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:52:1,51:0.980769:51,41,0 chr1 53214206 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:30:0,30:1:53,36,0 chr1 53218249 . C G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:37:0,37:1:58,46,0 chr1 53218853 . C G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:102:1,101:0.990196:58,38,0 chr1 53247055 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:41:0,41:1:53,44,0 chr1 53250744 . G A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:67:0,66:0.985075:60,53,0 chr1 53266643 . G T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:61:0,61:1:53,39,0 chr1 53276834 . A G 39.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:11:0,11:1:39,19,0 chr1 53326979 . A C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:115:63,52:0.452174:51,0,46 chr1 53327839 . T C 25.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:6:1,5:0.833333:25,0,22 chr1 53509314 . G T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:55:0,55:1:53,38,0 chr1 53600105 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:15:0,15:1:51,36,0 chr1 53600158 . G T 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:33:0,33:1:55,43,0 chr1 53600251 . G A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:24:0,24:1:48,36,0 chr1 53600324 . A T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:9:0,9:1:48,27,0 chr1 53793207 . C T 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:19:13,6:0.315789:39,0,57 chr1 53832624 . T C 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:4:1,3:0.75:29,0,5 chr1 53909897 . C A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:47:23,24:0.510638:45,0,50 chr1 53916851 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:27,35:0.564516:48,0,58 chr1 53923844 . G GT 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:21:12,9:0.428571:56,0,64 chr1 53966346 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:26,20:0.434783:51,0,56 chr1 54096243 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:18:9,9:0.5:48,0,57 chr1 54136674 . G A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:56:27,28:0.5:50,0,50 chr1 54139645 . T TG 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/0:36:113:2,58:0.513274:51,41,47 chr1 54139645 . T TGG 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:113:2,45:0.39823:51,41,43 chr1 54141131 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:64:40,24:0.375:45,0,56 chr1 54141378 . A G 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:66:0,66:1:62,48,0 chr1 54204985 . CCTT C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:14:7,7:0.5:50,0,59 chr1 54216247 . G C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:68:0,67:0.985294:57,41,0 chr1 54225281 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:111:64,46:0.414414:46,0,52 chr1 54404808 . T TG 15.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:22:7,12:0.545455:15,0,36 chr1 54406036 . T TCGCCGC 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:33:26,6:0.181818:52,0,41 chr1 54548284 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:72:49,23:0.319444:48,0,62 chr1 54548340 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:70:45,25:0.357143:47,0,60 chr1 54604313 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:32:0,32:1:55,51,0 chr1 54609779 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:104:0,104:1:54,41,0 chr1 54619826 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:38:0,38:1:50,49,0 chr1 54634655 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:22:0,22:1:50,36,0 chr1 54652893 . C G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:8:0,8:1:42,18,0 chr1 54653471 . A G 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:70:0,70:1:62,40,0 chr1 54653616 . G C 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:79:0,79:1:62,50,0 chr1 54653873 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:94:0,94:1:55,36,0 chr1 54665258 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:68:0,68:1:58,43,0 chr1 54665273 . G C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:51:0,51:1:48,34,0 chr1 54674068 . A G 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,73:0.986486:60,48,0 chr1 54701169 . C T 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:58:32,26:0.448276:41,0,49 chr1 54702100 . T A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:68:0,68:1:56,40,0 chr1 54733747 . ATTT A 7.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:19:7,2:0.105263:6,0,42 chr1 54781424 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:21,17:0.447368:54,0,53 chr1 54782401 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:133:79,53:0.398496:48,0,53 chr1 54786016 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:49:1,48:0.979592:53,43,0 chr1 54787673 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:17,21:0.552632:57,0,51 chr1 54801172 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:66:31,35:0.530303:52,0,49 chr1 54806101 . A G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:34:22,12:0.352941:46,0,58 chr1 54806970 . C G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:68:38,30:0.441176:49,0,56 chr1 54807907 . G T 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:38:27,10:0.263158:37,0,53 chr1 54811757 . T A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:23:11,12:0.521739:42,0,49 chr1 54825041 . CTTTTTTTTTTTTTTT C 27.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:6:0,5:0.833333:27,12,0 chr1 54852435 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:19:9,10:0.526316:60,0,67 chr1 54854229 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:133:74,59:0.443609:47,0,56 chr1 54854262 . GA G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:98:48,50:0.510204:55,0,62 chr1 54865293 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:38:0,38:1:50,42,0 chr1 54981024 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:70:0,70:1:50,41,0 chr1 54992037 . G A 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:85:0,85:1:60,44,0 chr1 54992142 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:13:0,13:1:48,24,0 chr1 54999117 . C G 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:56:34,22:0.392857:38,0,52 chr1 54999313 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:111:60,51:0.459459:53,0,56 chr1 55007370 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:103:53,49:0.475728:45,0,48 chr1 55040059 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:115:0,115:1:57,48,0 chr1 55052267 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:44:24,20:0.454545:41,0,48 chr1 55052420 . G A 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:68:38,30:0.441176:41,0,58 chr1 55052614 . G A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:31:21,10:0.322581:43,0,56 chr1 55052794 . A G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:38:17,21:0.552632:47,0,58 chr1 55056226 . GGGGCGGA G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:43:2,41:0.953488:51,41,0 chr1 55057360 . A G 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:101:0,101:1:60,48,0 chr1 55058524 . A G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:47:0,47:1:60,42,0 chr1 55058564 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:89:0,89:1:56,41,0 chr1 55058666 . CGTGTGTGTGTGTGT C 19 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:41:34,5:0.121951:18,9,0 chr1 55063514 . G A 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:80:0,80:1:62,41,0 chr1 55075501 . A G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:16:0,16:1:44,24,0 chr1 55089612 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:19:0,19:1:51,42,0 chr1 55096452 . G T 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:8:0,8:1:42,21,0 chr1 55101737 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:36:0,34:0.944444:50,35,0 chr1 55107194 . G A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:33:0,33:1:53,43,0 chr1 55172402 . G A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:47:0,47:1:52,41,0 chr1 55178164 . TA T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:20:0,20:1:48,36,0 chr1 56512147 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:51:29,22:0.431373:45,0,59 chr1 56719667 . T C 13.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:29:24,5:0.172414:13,0,43 chr1 56720145 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:13:3,10:0.769231:53,0,41 chr1 56753958 . G GA 44.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:31:1,30:0.967742:44,32,0 chr1 56755880 . G T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:9:0,9:1:46,34,0 chr1 56755881 . A G 45.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:9:0,9:1:45,32,0 chr1 56758787 . G C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:14:0,14:1:47,27,0 chr1 56792812 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:18,22:0.55:49,0,51 chr1 56917685 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:92:47,45:0.48913:53,0,56 chr1 56929578 . T C 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:48:0,48:1:61,46,0 chr1 56943656 . A G 20.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:77:57,20:0.25974:20,0,47 chr1 56956811 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:105:0,105:1:57,45,0 chr1 56995012 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:24:0,24:1:57,41,0 chr1 58539307 . C T 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:24:0,24:1:60,48,0 chr1 58661414 . G A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:40:0,39:0.975:59,45,0 chr1 58661521 . C T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:28:0,28:1:58,44,0 chr1 58665639 . G T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:19:0,19:1:55,40,0 chr1 58668935 . C CAG 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:18:0,16:0.888889:48,32,0 chr1 58685269 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:48:1,47:0.979167:54,35,0 chr1 58695213 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:16:0,16:1:45,30,0 chr1 59815077 . GT G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:26:0,26:1:48,37,0 chr1 59863793 . CT C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:12:0,12:1:47,34,0 chr1 59865823 . G A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:6:3,3:0.5:42,0,56 chr1 60001142 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:68:32,36:0.529412:51,0,56 chr1 60038090 . T C 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:52:35,17:0.326923:40,0,52 chr1 60039906 . A G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:20:0,20:1:60,43,0 chr1 60041090 . G A 12.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:94:73,21:0.223404:12,0,38 chr1 61404111 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:114:60,53:0.464912:46,0,59 chr1 61406556 . C CT 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:75:35,32:0.426667:38,0,45 chr1 61766252 . T TTGA 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:13:7,6:0.461538:45,0,58 chr1 61766359 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:53:0,53:1:53,36,0 chr1 61766501 . T C 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:20:5,15:0.75:53,0,51 chr1 61791364 . A C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:22:0,22:1:51,35,0 chr1 61795496 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:49:23,26:0.530612:51,0,47 chr1 61864213 . AT A 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:29:17,12:0.413793:40,0,55 chr1 61864408 . T G 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:34:0,34:1:58,45,0 chr1 61899545 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:23:0,23:1:52,44,0 chr1 61914598 . C T 41.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:15:0,15:1:41,27,0 chr1 61914626 . G A 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:16:13,3:0.1875:7,0,39 chr1 61927722 . A G 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:42:0,42:1:55,43,0 chr1 61990342 . G A 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:46:0,46:1:59,43,0 chr1 62017927 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:23:0,23:1:56,39,0 chr1 62051011 . G C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:67:0,67:1:54,38,0 chr1 62079413 . C T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:0,24:1:56,39,0 chr1 62114151 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:86:0,86:1:59,38,0 chr1 62121342 . T TA 21.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:8:2,6:0.75:19,0,0 chr1 62128921 . C T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:59:1,58:0.983051:57,47,0 chr1 62178446 . A G 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:38:28,10:0.263158:30,0,54 chr1 62206717 . T TAACAGA 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:25:16,9:0.36:54,0,65 chr1 62206874 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:18:0,18:1:46,28,0 chr1 62207365 . T C 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:43:0,43:1:50,42,0 chr1 62207553 . G A 39.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:4:0,4:1:38,8,0 chr1 62209947 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:103:54,49:0.475728:52,0,52 chr1 62210220 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:55:25,30:0.545455:54,0,59 chr1 62210612 . C T 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:37:26,11:0.297297:40,0,53 chr1 62211376 . G T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:20:8,12:0.6:48,0,59 chr1 62247552 . C G 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:132:0,132:1:62,44,0 chr1 62263112 . A G 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:39:25,14:0.358974:39,0,55 chr1 62263166 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:74:54,20:0.27027:52,0,58 chr1 62263189 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:75:50,25:0.333333:51,0,70 chr1 62263246 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:75:40,35:0.466667:47,0,61 chr1 62263343 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:25:13,12:0.48:49,0,65 chr1 62266749 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:42,27:0.391304:47,0,49 chr1 62273232 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:46:26,20:0.434783:49,0,54 chr1 62274774 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:66:35,31:0.469697:58,0,59 chr1 62274777 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:36,31:0.462687:53,0,54 chr1 62473963 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:35:0,35:1:56,39,0 chr1 62494430 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:158:99,59:0.373418:46,0,48 chr1 62535449 . A C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:9,19:0.678571:50,0,42 chr1 62561740 . AG A 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:24:0,24:1:52,38,0 chr1 62578793 . C T 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:7:4,3:0.428571:31,0,48 chr1 62584927 . T G 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:7:4,3:0.428571:24,0,47 chr1 62604866 . AGTTAATGTG A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:30,18:0.375:49,0,56 chr1 62688282 . C T 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:16:9,7:0.4375:36,0,50 chr1 63415881 . C T 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:37:26,11:0.297297:36,0,55 chr1 63446875 . G T 31.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:27:13,9:0.333333:31,0,58 chr1 63454844 . C G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:13:5,8:0.615385:51,0,52 chr1 63486767 . C T 24.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:66:50,16:0.242424:24,0,48 chr1 63523233 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:93:49,44:0.473118:48,0,54 chr1 63531962 . A T 8.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:18:15,3:0.166667:8,0,44 chr1 63534155 . C T 11.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:33:29,4:0.121212:10,0,45 chr1 63555425 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:23:14,9:0.391304:44,0,55 chr1 63571167 . G A 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:6:3,3:0.5:30,0,36 chr1 63572436 . G T 28.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:19:12,7:0.368421:28,0,58 chr1 63634807 . A T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:59:37,22:0.372881:49,0,53 chr1 63648285 . A T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:11,17:0.607143:58,0,49 chr1 63648630 . T C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:49,39:0.438202:47,0,56 chr1 63651866 . G T 25.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:102:65,37:0.362745:25,0,48 chr1 63659080 . C T 18.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:38:31,5:0.131579:18,0,44 chr1 63659153 . A T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:61,14:0.186667:48,0,59 chr1 63659159 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:77:63,14:0.181818:48,0,57 chr1 63659259 . T A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:24,10:0.294118:47,0,61 chr1 63659401 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:77:37,40:0.519481:54,0,58 chr1 63659563 . G T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:163:80,83:0.509202:53,0,55 chr1 63659697 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:136:73,63:0.463235:47,0,34 chr1 63659768 . A C 30.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:97:67,30:0.309278:30,0,55 chr1 64049707 . C T 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:129:0,129:1:62,43,0 chr1 64142646 . G T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:67:0,67:1:60,46,0 chr1 64159159 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:21,21:0.5:52,0,54 chr1 64177594 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:48,39:0.448276:48,0,54 chr1 64260731 . A C 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:26:15,11:0.423077:43,0,58 chr1 64550666 . A T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:32:0,32:1:56,41,0 chr1 64602955 . T C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:10:0,10:1:44,23,0 chr1 64634295 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:17:0,17:1:45,29,0 chr1 64647885 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:68:0,68:1:55,43,0 chr1 64675993 . TTAATAA T 32.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:9:4,5:0.555556:30,1,0 chr1 64807343 . A G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:105:62,43:0.409524:43,0,56 chr1 64845579 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:123:83,40:0.325203:50,0,52 chr1 65048822 . AAT A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:102:64,38:0.372549:53,0,68 chr1 65048921 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:16,30:0.652174:56,0,55 chr1 65345678 . AG A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:50:0,50:1:47,31,0 chr1 65364614 . G T 25.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:98:34,34:0.346939:25,0,59 chr1 65384204 . G A 34.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:72:52,20:0.277778:34,0,55 chr1 65392405 . T C 19.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:7:5,2:0.285714:19,0,48 chr1 65392462 . G A 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:56:25,31:0.553571:58,0,59 chr1 65395004 . A C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:36,41:0.532468:43,0,49 chr1 65420715 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:143:81,62:0.433566:52,0,60 chr1 65420765 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:137:72,65:0.474453:46,0,59 chr1 65570818 . G T 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:22:0,22:1:49,35,0 chr1 65572290 . GT G 12 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:28:16,4:0.142857:11,0,11 chr1 65601713 . T C 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:66:46,20:0.30303:37,0,51 chr1 66363579 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:57,39,0 chr1 66365639 . T G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:23:13,10:0.434783:51,0,59 chr1 66365687 . G A 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:53:0,53:1:55,46,0 chr1 66643727 . T TTGTG 19.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:29:15,14:0.482759:19,0,48 chr1 66679639 . C A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:50:0,50:1:57,37,0 chr1 66690179 . TCTC T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:45:0,45:1:58,37,0 chr1 66729228 . TTC T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:33:0,33:1:48,40,0 chr1 66755704 . T C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:15:0,15:1:46,28,0 chr1 66777341 . C A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:54:32,22:0.407407:45,0,53 chr1 66822362 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:54:27,27:0.5:52,0,56 chr1 66826790 . A AT 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:16:6,10:0.625:41,0,55 chr1 66826795 . T A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:18:7,11:0.611111:48,0,53 chr1 66924733 . G C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:91:58,33:0.362637:48,0,54 chr1 66924785 . C G 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:75:51,24:0.32:31,0,62 chr1 66940270 . CTT C 12.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:16:2,3:0.1875:7,0,36 chr1 66940270 . C CT 12.5 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:16:2,2:0.125:7,0,40 chr1 66970763 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:12:5,7:0.583333:49,0,56 chr1 66972852 . A T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:13:4,9:0.692308:49,0,46 chr1 66976592 . C T 29.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:11:8,3:0.272727:29,0,52 chr1 66981767 . A G 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:14:9,5:0.357143:33,0,61 chr1 67047220 . G T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:21,10:0.322581:47,0,62 chr1 67047237 . A C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:57:29,28:0.491228:54,0,60 chr1 67093056 . C T 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:13:10,3:0.230769:36,0,60 chr1 67093073 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:20:15,5:0.25:40,0,59 chr1 67093080 . A G 29.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:21:17,4:0.190476:29,0,54 chr1 67095214 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:29:15,14:0.482759:52,0,63 chr1 67095273 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:82:47,35:0.426829:53,0,65 chr1 67095407 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:19,15:0.441176:51,0,58 chr1 67096226 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:10:6,4:0.4:43,0,61 chr1 67139019 . G C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:50:30,20:0.4:48,0,55 chr1 67219704 . T C 33.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:50:35,15:0.3:33,0,54 chr1 67219760 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:14:9,5:0.357143:53,0,57 chr1 67307966 . T C 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:15:7,8:0.533333:43,0,48 chr1 67313993 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:26:12,14:0.538462:48,0,56 chr1 67329636 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:39:0,39:1:56,45,0 chr1 67386652 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:0,35:1:52,40,0 chr1 67395837 . C A 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:92:0,92:1:59,45,0 chr1 67424843 . A G 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:38:0,38:1:62,48,0 chr1 67707581 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:48:28,20:0.416667:51,0,57 chr1 68137749 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:27:0,27:1:57,39,0 chr1 68137903 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:75:0,75:1:57,43,0 chr1 68155079 . G A 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:59:0,59:1:60,46,0 chr1 68477753 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:11:0,11:1:46,36,0 chr1 68477759 . A G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:11:0,11:1:42,31,0 chr1 68477982 . T G 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:14:8,6:0.428571:39,0,56 chr1 68481635 . C CA 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:52,44,0 chr1 69568687 . C CCAGCCGCGTG 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:40:3,30:0.75:48,40,0 chr1 69760149 . G A 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:15:10,4:0.266667:32,0,57 chr1 69834755 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:21:12,9:0.428571:49,0,59 chr1 70438840 . T TTGTG 19.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:74:15,52:0.702703:19,0,22 chr1 70439117 . G T 7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:53:41,12:0.226415:6,0,37 chr1 70953816 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:21:0,21:1:53,41,0 chr1 71072260 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:16:9,7:0.4375:44,0,59 chr1 71587342 . C T 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:25:18,7:0.28:36,0,59 chr1 71592869 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:74:0,73:0.986486:56,54,0 chr1 74109498 . C T 7.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:26:20,6:0.230769:6,0,42 chr1 74121284 . G A 22.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:10:8,2:0.2:22,0,52 chr1 74198465 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:14,25:0.641026:49,0,51 chr1 74199809 . G A 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:62:42,20:0.322581:36,0,51 chr1 74205835 . A G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:16,12:0.428571:42,0,53 chr1 74353393 . T G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:0,25:1:55,38,0 chr1 74436055 . CT C 19.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:87:13,39:0.448276:19,16,0 chr1 74470690 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:21,22:0.511628:56,0,59 chr1 74470770 . G C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:64:36,28:0.4375:56,0,60 chr1 74472065 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:83:43,39:0.46988:50,0,59 chr1 74475526 . C T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:77:43,34:0.441558:53,0,59 chr1 74475609 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:92:47,45:0.48913:57,0,63 chr1 74540343 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:20:9,11:0.55:49,0,54 chr1 74571099 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:37:0,37:1:51,39,0 chr1 74571128 . C T 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:73:0,73:1:59,46,0 chr1 74572161 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:110:61,49:0.445455:51,0,57 chr1 74572544 . A C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:63:30,33:0.52381:46,0,58 chr1 74606580 . G T 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:20:11,9:0.45:37,0,55 chr1 74631742 . G C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:43:21,22:0.511628:57,0,60 chr1 74706317 . T A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:61:33,28:0.459016:53,0,58 chr1 74707072 . TA T 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:26:11,13:0.5:43,0,41 chr1 74724768 . C T 20.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:80:60,20:0.25:20,0,49 chr1 74733468 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:53,39,0 chr1 74748706 . G C 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:26:16,10:0.384615:39,0,64 chr1 75134821 . AT A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:10:69:1,33:0.478261:45,12,56 chr1 75134821 . A ATT 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:69:1,20:0.289855:45,12,55 chr1 75136699 . G T 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:82:51,31:0.378049:36,0,41 chr1 75148695 . CT C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:43:11,26:0.604651:46,43,0 chr1 75156931 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:97:54,43:0.443299:48,0,60 chr1 75206691 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:76:0,76:1:55,49,0 chr1 75215826 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:32:0,32:1:54,49,0 chr1 75251240 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:33:1,32:0.969697:51,32,0 chr1 75615910 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:44:20,24:0.545455:45,0,52 chr1 75728544 . GT G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:15:4,11:0.733333:46,30,0 chr1 75792207 . A T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:42:0,42:1:58,42,0 chr1 75807152 . A G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:37:0,37:1:52,37,0 chr1 75878326 . C A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:13:0,13:1:46,27,0 chr1 75879020 . T C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:11:0,11:1:41,27,0 chr1 75879026 . A T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:12:0,12:1:42,27,0 chr1 75880199 . T A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:8:0,8:1:46,20,0 chr1 75881235 . C CAT 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,20:1:48,36,0 chr1 75912676 . T A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:16:1,15:0.9375:44,35,0 chr1 75912678 . T A 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:18:8,9:0.5:32,0,31 chr1 75922063 . T A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:13:0,13:1:49,31,0 chr1 75932287 . C T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:32:0,32:1:60,47,0 chr1 76627495 . C A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:59:0,59:1:55,43,0 chr1 77161411 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:17:0,17:1:50,33,0 chr1 77169263 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:13:0,13:1:47,31,0 chr1 77293893 . A G 28.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:46:34,12:0.26087:28,0,52 chr1 77502671 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:22:0,22:1:47,32,0 chr1 77558599 . T C 24.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:2:0,2:1:22,2,0 chr1 77558660 . C CTAT 12.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:2:0,2:1:10,4,0 chr1 77568296 . AAAATG A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:14:0,14:1:43,29,0 chr1 77568471 . CAA C 24.9 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:13:2,4:0.307692:22,12,1 chr1 77568471 . CA C 24.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:13:2,4:0.307692:22,12,16 chr1 77917782 . G A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:19:0,19:1:54,34,0 chr1 77933522 . C G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:11:0,11:1:45,26,0 chr1 78492806 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:65:37,28:0.430769:53,0,52 chr1 78628133 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:17:5,11:0.647059:47,0,48 chr1 78628396 . T A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:21:8,13:0.619048:51,0,65 chr1 78628908 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:11:0,11:1:47,29,0 chr1 78629896 . T C 35.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:52:32,20:0.384615:35,0,55 chr1 78662885 . G GT 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:105:55,50:0.47619:54,0,59 chr1 78891675 . G C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:41:0,41:1:55,33,0 chr1 78918081 . G T 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:28:15,13:0.464286:39,0,53 chr1 81955912 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:27:0,27:1:49,35,0 chr1 84299677 . T A 31.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:9:2,7:0.777778:30,6,0 chr1 84411028 . C CA 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:21:15,6:0.285714:48,0,63 chr1 84411048 . T G 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:14:9,5:0.357143:45,0,56 chr1 84412545 . C T 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:53:36,17:0.320755:37,0,58 chr1 84481062 . C T 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:22:0,22:1:61,47,0 chr1 84490478 . C CT 3.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:37:19,14:0.378378:1,0,35 chr1 84516255 . C CA 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:8:5,3:0.375:33,0,44 chr1 84525805 . T G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:11,20:0.645161:51,0,49 chr1 84533643 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:26:8,18:0.692308:56,0,52 chr1 84535343 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:35:10,25:0.714286:56,0,45 chr1 84544211 . A G 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:30:20,10:0.333333:36,0,60 chr1 84548750 . CTTTTTTTTTTTTTTT C 7.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:28:18,4:0.142857:7,0,29 chr1 84550494 . A G 35.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:7:0,7:1:35,11,0 chr1 84563394 . C T 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:42:19,23:0.547619:40,0,47 chr1 84565947 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:0,31:1:52,44,0 chr1 84569909 . C A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:16:6,10:0.625:49,0,52 chr1 84570556 . C G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:13:0,13:1:50,27,0 chr1 84574272 . G A 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:63:0,63:1:56,46,0 chr1 84574315 . CGCAGCGCCA C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:71:0,71:1:54,50,0 chr1 84574386 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:40:0,40:1:48,31,0 chr1 84574387 . C A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:40:19,21:0.525:55,0,64 chr1 84647520 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:59:0,59:1:57,47,0 chr1 84656300 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:17:5,12:0.705882:58,0,54 chr1 84662579 . A G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:22:13,9:0.409091:47,0,57 chr1 84866125 . G GAGA 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:18:8,8:0.444444:47,0,67 chr1 85022347 . G A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:0,24:1:53,40,0 chr1 85025588 . TA T 24 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:36:5,22:0.611111:23,27,0 chr1 85082262 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:10:0,10:1:48,26,0 chr1 85085785 . A ATCAGTTTTTCT 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:16:0,14:0.875:43,36,0 chr1 85093435 . CT C 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:47,45,0 chr1 85108022 . A AC 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:24:3,21:0.875:51,29,0 chr1 85124256 . GT G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:45:1,44:0.977778:49,45,0 chr1 85129962 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:31:0,31:1:51,37,0 chr1 85132844 . TC T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:27:0,27:1:46,32,0 chr1 85158866 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:58:0,58:1:56,43,0 chr1 85159181 . G A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:39:0,39:1:60,47,0 chr1 85182937 . C T 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:0,54:1:63,44,0 chr1 85200473 . T G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:141:78,63:0.446809:41,0,47 chr1 85201229 . T C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:86:0,86:1:40,35,0 chr1 85258645 . C T 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:110:73,37:0.336364:41,0,52 chr1 85259670 . GCCGGAAA G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:9,10:0.526316:41,0,56 chr1 85276001 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:96:51,45:0.46875:51,0,47 chr1 85276238 . G C 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:100:66,32:0.32:30,0,48 chr1 85276329 . G C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:165:105,60:0.363636:44,0,55 chr1 85321435 . G C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:49:24,25:0.510204:53,0,57 chr1 85702274 . C T 42.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:7:0,7:1:42,17,0 chr1 85707615 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:21,25:0.543478:52,0,48 chr1 85744863 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:18:0,18:1:51,32,0 chr1 85784228 . A G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:55:0,55:1:58,42,0 chr1 85786342 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:44:0,44:1:57,48,0 chr1 85868633 . T C 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:34:20,14:0.411765:40,0,52 chr1 85907156 . T TG 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:16,13:0.448276:48,0,63 chr1 85909971 . C G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:62:0,62:1:52,44,0 chr1 85911345 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:12,10:0.454545:49,0,64 chr1 85987554 . T G 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:18:11,7:0.388889:40,0,50 chr1 86063707 . G A 22.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:38:30,8:0.210526:22,0,49 chr1 86089130 . G GA 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:15,13:0.448276:44,0,61 chr1 86089138 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:15,16:0.516129:48,0,58 chr1 86125232 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:20:0,20:1:56,55,0 chr1 86125265 . A G 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:23:13,10:0.434783:42,0,53 chr1 86126154 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:50:35,15:0.3:44,0,48 chr1 86156309 . C A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:55:25,30:0.545455:52,0,47 chr1 86352889 . T C 4.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:33:28,5:0.151515:2,0,32 chr1 86354584 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:51:26,25:0.490196:52,0,54 chr1 86356548 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:149:76,73:0.489933:51,0,51 chr1 86372475 . C T 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:34:27,7:0.205882:28,0,53 chr1 86382272 . G A 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:58:41,17:0.293103:39,0,53 chr1 86425322 . C A 30.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:4:0,4:1:30,8,0 chr1 86434649 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:55:33,22:0.4:53,0,68 chr1 86434689 . C G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:52:33,19:0.365385:47,0,64 chr1 86444020 . T C 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:25:14,11:0.44:42,0,52 chr1 86473447 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:52:0,52:1:50,42,0 chr1 86473707 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:16:0,16:1:56,36,0 chr1 86482292 . A T 18.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:56:45,11:0.196429:18,0,44 chr1 86486641 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:118:63,55:0.466102:51,0,53 chr1 86493490 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:101:53,48:0.475248:52,0,55 chr1 86499736 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:33,22:0.4:46,0,55 chr1 86571063 . C A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:63:0,63:1:53,40,0 chr1 86580213 . TCCTACA T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:55:0,55:1:51,39,0 chr1 86724410 . GTAAA G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:15:7,8:0.533333:54,0,50 chr1 86735046 . C G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:19:0,19:1:53,36,0 chr1 86743270 . T A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:30:14,16:0.533333:50,0,61 chr1 87084175 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:27:0,27:1:53,44,0 chr1 87097985 . G A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:30:0,30:1:58,49,0 chr1 87104715 . G A 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:11:7,4:0.363636:35,0,53 chr1 87250750 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:95:55,40:0.421053:52,0,56 chr1 87250832 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:36:21,15:0.416667:55,0,54 chr1 88760293 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:35:20,15:0.428571:56,0,62 chr1 88771873 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:27,16:0.372093:46,0,59 chr1 88821923 . A G 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:24,11:0.314286:43,0,58 chr1 88833209 . CAAACT C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:12,20:0.625:48,0,51 chr1 88857299 . G A 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:73:0,73:1:59,39,0 chr1 88961219 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:19:0,19:1:46,32,0 chr1 88983126 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:54:32,22:0.407407:51,0,63 chr1 88983650 . T C 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:121:94,27:0.22314:35,0,99 chr1 89009135 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:41:18,23:0.560976:53,0,56 chr1 89009452 . C T 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:41:27,14:0.341463:39,0,59 chr1 89013171 . C G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:26:11,15:0.576923:50,0,54 chr1 89014075 . T C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:25:9,16:0.64:51,0,53 chr1 89054891 . C A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:52:34,18:0.346154:44,0,58 chr1 89056158 . G C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:34,20:0.37037:46,0,59 chr1 89056963 . G C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:73:36,37:0.506849:58,0,60 chr1 89058244 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:32:16,16:0.5:46,0,63 chr1 89152789 . GA G 16.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:37:25,4:0.108108:16,0,45 chr1 89191291 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:22:12,10:0.454545:46,0,55 chr1 89380367 . GT G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:37:0,37:1:55,48,0 chr1 89381813 . G T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:59:0,59:1:57,42,0 chr1 89381852 . C T 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:44:0,44:1:62,42,0 chr1 89381885 . A G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:44:1,43:0.977273:45,34,0 chr1 89383642 . C G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:43:0,43:1:50,37,0 chr1 89383791 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:18:0,18:1:57,37,0 chr1 89384183 . A T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:63:0,63:1:54,41,0 chr1 89583481 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:51:30,21:0.411765:50,0,63 chr1 89713184 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:52:0,52:1:57,43,0 chr1 89713973 . A G 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:58:36,22:0.37931:39,0,56 chr1 90918032 . T G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:61:30,31:0.508197:46,0,52 chr1 91262496 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:36:0,36:1:57,47,0 chr1 91273857 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:51,26,0 chr1 91315856 . T G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:42:0,42:1:55,40,0 chr1 91375744 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:42:0,42:1:54,34,0 chr1 91380177 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:58:38,20:0.344828:53,0,53 chr1 91385696 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:54:0,54:1:53,38,0 chr1 91394238 . T C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:38:0,38:1:57,42,0 chr1 91404853 . G C 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:66:0,66:1:60,50,0 chr1 91514890 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:45:0,45:1:52,43,0 chr1 91524015 . T G 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:26:0,26:1:61,52,0 chr1 91683720 . C T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:58:25,32:0.551724:54,0,50 chr1 91708703 . A G 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:104:0,104:1:61,52,0 chr1 91712381 . A G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:54:0,54:1:56,46,0 chr1 91720100 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:75:33,42:0.56:54,0,50 chr1 91758790 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:14:6,8:0.571429:48,0,60 chr1 91797317 . T C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:14,22:0.611111:49,0,53 chr1 91962938 . C A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:23:0,23:1:48,37,0 chr1 91980841 . T A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:20:7,13:0.65:50,0,49 chr1 92002184 . A C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:33:18,15:0.454545:50,0,62 chr1 92102706 . A G 37.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:5:0,5:1:37,12,0 chr1 92180464 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:25:0,25:1:53,35,0 chr1 92181666 . A G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:37:0,37:1:55,45,0 chr1 92181975 . C A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:47:0,47:1:60,46,0 chr1 92245510 . A T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:11:4,7:0.636364:50,0,56 chr1 92247041 . GAA G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:73:40,33:0.452055:51,0,63 chr1 92269802 . T C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:24:10,14:0.583333:58,0,57 chr1 92358041 . G C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:41:22,19:0.463415:42,0,50 chr1 92478757 . CAG C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:72:1,60:0.833333:41,21,0 chr1 92480922 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:28,26:0.481481:51,0,47 chr1 92486660 . CA C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:43:0,43:1:47,44,0 chr1 92513797 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:60,31:0.340659:48,0,55 chr1 92607671 . C A 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:89:52,37:0.41573:34,0,43 chr1 92624266 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:57,43,0 chr1 92695345 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,25:1:56,42,0 chr1 92697828 . A G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:8:2,6:0.75:47,0,37 chr1 92703852 . A G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:33:0,32:0.969697:60,44,0 chr1 92841745 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:10,18:0.642857:50,0,47 chr1 93115435 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:10:0,10:1:49,34,0 chr1 93115467 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:13,12:0.48:50,0,49 chr1 93136637 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:16:0,16:1:54,39,0 chr1 93154836 . G A 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:91:60,31:0.340659:37,0,45 chr1 93180650 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:42:0,42:1:53,40,0 chr1 93180861 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:30,32:0.516129:49,0,49 chr1 93184175 . A G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:9:0,9:1:44,26,0 chr1 93193793 . A T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:10:0,10:1:46,29,0 chr1 93207166 . A C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:50,32,0 chr1 93210757 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:14:0,14:1:54,37,0 chr1 93232515 . G A 24.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:51:39,12:0.235294:24,0,54 chr1 93239395 . A G 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:47:36,11:0.234043:22,0,43 chr1 93246225 . T A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:32:22,10:0.3125:45,0,55 chr1 93270998 . C T 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:5:2,3:0.6:32,0,30 chr1 93533083 . AT A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:16,14:0.466667:47,0,56 chr1 93571772 . C T 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:71:44,27:0.380282:40,0,51 chr1 93875711 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:18:0,18:1:51,37,0 chr1 93876505 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:61:35,26:0.42623:51,0,61 chr1 93876651 . C A 27.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:84:57,27:0.321429:27,0,50 chr1 93877008 . C A 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:46:32,14:0.304348:37,0,58 chr1 93877467 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:20,19:0.487179:48,0,60 chr1 93877677 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:47:0,47:1:54,40,0 chr1 93879160 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:63:33,30:0.47619:45,0,45 chr1 93901541 . G A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:17:12,5:0.294118:40,0,57 chr1 94005519 . A G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:80:0,80:1:58,43,0 chr1 94021729 . AAC A 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:40:21,19:0.475:42,0,67 chr1 94021798 . G A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:20,17:0.459459:48,0,60 chr1 94027675 . G T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:123:71,52:0.422764:43,0,56 chr1 94028297 . C G 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:55:29,26:0.472727:46,0,49 chr1 94030890 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:50:22,28:0.56:50,0,53 chr1 94045977 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:28,29:0.508772:47,0,49 chr1 94078579 . A AC 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:48:1,47:0.979167:49,39,0 chr1 94078677 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:112:77,35:0.3125:41,0,44 chr1 94078720 . G A 64.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:61:73:0,73:1:64,63,0 chr1 94111337 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:72:42,30:0.416667:51,0,48 chr1 94111412 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:115:0,115:1:59,57,0 chr1 94112992 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:121:1,120:0.991736:57,39,0 chr1 94173891 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:36:0,36:1:49,40,0 chr1 94177975 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:98:56,42:0.428571:56,0,56 chr1 94201874 . G GA 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:11:0,11:1:46,32,0 chr1 94202490 . C T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:65:0,65:1:57,44,0 chr1 94464789 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:44,30:0.4:48,0,58 chr1 94515115 . C G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:25:0,25:1:49,36,0 chr1 94821102 . C A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:25:15,10:0.4:45,0,67 chr1 94824447 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:30,22:0.423077:49,0,56 chr1 94864816 . G A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:50:0,50:1:58,42,0 chr1 94888619 . C G 26.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:25:19,6:0.24:26,0,58 chr1 94888641 . C T 11.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:27:19,6:0.222222:11,0,51 chr1 94892540 . A G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:33:15,18:0.545455:57,0,64 chr1 94902093 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:23:12,11:0.478261:50,0,59 chr1 94926804 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:61:27,34:0.557377:52,0,56 chr1 95244265 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:42:0,42:1:59,40,0 chr1 95244383 . T G 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:55:34,21:0.381818:37,0,55 chr1 95246902 . C A 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:15:4,11:0.733333:37,0,38 chr1 97305364 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:106:52,54:0.509434:53,0,58 chr1 97595197 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:19,22:0.536585:47,0,50 chr1 97883329 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:50,37:0.425287:48,0,58 chr1 98661649 . A G 24.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:3:0,3:1:23,5,0 chr1 98661836 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:77:0,77:1:57,44,0 chr1 98685079 . G A 40.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:5:0,5:1:40,16,0 chr1 98760071 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:27:0,27:1:55,39,0 chr1 98922072 . T TA 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:19:2,15:0.789474:39,0,10 chr1 98953355 . TTGTGTGTGTGTG T 24 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:38:9,29:0.763158:24,0,47 chr1 99693996 . C CT 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:20,38:0.612903:50,0,48 chr1 99709114 . C T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:33:18,15:0.454545:47,0,49 chr1 99711970 . G A 30.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:28:22,6:0.214286:30,0,53 chr1 99738041 . G A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:14:8,6:0.428571:41,0,57 chr1 99738092 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:27,11:0.289474:48,0,58 chr1 99738137 . G A 27 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:93:73,20:0.215054:27,0,55 chr1 99851209 . C T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:38:0,38:1:58,46,0 chr1 99861470 . C T 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:27:0,27:1:61,46,0 chr1 99864333 . G C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:0,54:1:55,44,0 chr1 99864681 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:13:0,13:1:47,29,0 chr1 99864739 . T C 32.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:4:0,4:1:31,5,0 chr1 99870805 . C T 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:27:0,27:1:59,45,0 chr1 99874669 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:19:0,19:1:51,38,0 chr1 99888119 . G A 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:64:0,64:1:63,47,0 chr1 99892547 . C T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:49:1,48:0.979592:57,37,0 chr1 99892644 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:15:0,15:1:47,34,0 chr1 99900890 . GTT G 33.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:19:0,14:0.736842:33,18,0 chr1 100133310 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:89:0,89:1:54,53,0 chr1 100133311 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:92:0,91:0.98913:51,50,0 chr1 100148863 . A T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:6:2,4:0.666667:47,0,52 chr1 100196431 . GAAAAA G 14.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:57:22,16:0.280702:13,0,5 chr1 100206504 . T C 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:97:0,97:1:62,50,0 chr1 100215037 . C CT 31.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:62:16,36:0.580645:31,33,0 chr1 100230629 . G GA 34.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:21:4,15:0.714286:34,21,0 chr1 100345151 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:58:37,21:0.362069:48,0,55 chr1 100351828 . A G 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:35:21,14:0.4:36,0,49 chr1 100352908 . T C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,25:1:55,41,0 chr1 100353717 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:56:28,28:0.5:51,0,54 chr1 100443021 . A T 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:34:23,11:0.323529:37,0,51 chr1 100484304 . G A 5.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:79:60,18:0.227848:3,0,43 chr1 100484395 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:62:36,26:0.419355:50,0,63 chr1 100538103 . A G 33.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:4:0,4:1:33,10,0 chr1 100538206 . C A 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:78:0,78:1:57,48,0 chr1 100538454 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:39:0,39:1:56,40,0 chr1 100539534 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:27:0,27:1:55,42,0 chr1 100724617 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:35:17,18:0.514286:53,0,61 chr1 100729409 . G GT 11 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:8:2,4:0.5:8,0,1 chr1 100738271 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:21:0,21:1:54,37,0 chr1 101238976 . G T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:28:13,15:0.535714:51,0,55 chr1 101806218 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:49:24,25:0.510204:52,0,54 chr1 102886895 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:52:0,52:1:57,44,0 chr1 102888582 . A G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:20:0,20:1:48,30,0 chr1 102888872 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:17:0,17:1:53,30,0 chr1 102914362 . G A 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:11:1,10:0.909091:37,0,3 chr1 102914823 . T TA 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:37:4,26:0.702703:44,38,0 chr1 102979123 . T G 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:45:0,45:1:59,44,0 chr1 102995952 . T A 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:30:0,30:1:62,43,0 chr1 103005900 . CCAT C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:58:1,54:0.931035:45,32,0 chr1 103031249 . GA G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:86:12,65:0.755814:56,44,0 chr1 103082763 . C G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:18:0,18:1:57,40,0 chr1 107436774 . A C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:57:0,57:1:48,35,0 chr1 107596381 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:26:15,11:0.423077:48,0,61 chr1 107610008 . G T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:31:19,12:0.387097:42,0,52 chr1 107765105 . T A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:18:0,18:1:52,36,0 chr1 107770636 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:16:0,16:1:48,35,0 chr1 108161212 . C T 32.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:18:14,4:0.222222:32,0,54 chr1 108181896 . A G 19.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:45:35,10:0.222222:19,0,49 chr1 108182071 . G A 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:59:44,15:0.254237:35,0,50 chr1 108228902 . C T 15 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:5:3,2:0.4:14,0,32 chr1 108452303 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:54:0,54:1:37,35,0 chr1 108452330 . G T 29.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:28:0,28:1:29,26,0 chr1 108628124 . C T 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:39:0,39:1:61,48,0 chr1 108661531 . CT C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:54:33,21:0.388889:43,0,54 chr1 108712891 . G T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:21:0,21:1:58,46,0 chr1 108717735 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:19:9,10:0.526316:51,0,53 chr1 108722407 . G T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:81:46,35:0.432099:45,0,50 chr1 108725819 . G A 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:166:104,62:0.373494:42,0,55 chr1 108725951 . T C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:58:0,58:1:58,49,0 chr1 108727780 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:0,49:1:52,40,0 chr1 108746731 . C G 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:118:74,44:0.372881:39,0,50 chr1 108758628 . G C 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:11:6,5:0.454545:40,0,50 chr1 108782406 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:6,8:0.571429:52,0,52 chr1 108794950 . A C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:7:4,3:0.428571:38,0,49 chr1 108808879 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:20:9,11:0.55:44,0,50 chr1 108816336 . T C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:17:7,10:0.588235:53,0,63 chr1 108820518 . T C 34.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:21:15,6:0.285714:34,0,55 chr1 108820610 . T C 22.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:30:23,7:0.233333:22,0,53 chr1 108823664 . C T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:51:30,21:0.411765:44,0,56 chr1 108827175 . T G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:18,21:0.538462:52,0,54 chr1 108827293 . G T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:57:30,27:0.473684:40,0,56 chr1 108834535 . TA T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:43:4,35:0.813953:48,32,0 chr1 108848864 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:13:0,13:1:48,30,0 chr1 108852483 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:40,28:0.411765:45,0,53 chr1 108876973 . CG C 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:60:40,19:0.316667:37,0,55 chr1 108877219 . C T 20.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:14:11,3:0.214286:20,0,51 chr1 108877253 . C T 28.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:4:2,2:0.5:28,0,50 chr1 108885627 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:16:10,6:0.375:47,0,59 chr1 108897593 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:100:51,49:0.49:49,0,51 chr1 108918341 . C T 29 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:11:8,3:0.272727:29,0,54 chr1 108922543 . ACTT A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:69:43,26:0.376812:48,0,60 chr1 108924236 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:25:14,11:0.44:56,0,57 chr1 108931405 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:79:41,38:0.481013:47,0,52 chr1 108937356 . G T 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:72:50,22:0.305556:34,0,44 chr1 108939598 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:14,13:0.481481:45,0,53 chr1 108943574 . A G 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:74:41,33:0.445946:41,0,53 chr1 108943618 . TA T 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:34:17,17:0.5:57,0,60 chr1 108986700 . T TAA 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:14:0,14:1:46,32,0 chr1 109002424 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:48:0,48:1:53,42,0 chr1 109094607 . C G 22.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:42:31,11:0.261905:22,0,50 chr1 109112918 . G GC 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:52:32,20:0.384615:52,0,53 chr1 109113015 . C A 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:14:7,7:0.5:39,0,48 chr1 109114324 . T C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:119:58,61:0.512605:44,0,53 chr1 109114359 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:45:21,24:0.533333:56,0,64 chr1 109161996 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:59:1,58:0.983051:48,34,0 chr1 109192676 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:96:1,95:0.989583:51,37,0 chr1 109192794 . A C 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:92:0,92:1:60,47,0 chr1 109192882 . T C 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:46:0,46:1:59,41,0 chr1 109194441 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:36:0,36:1:48,34,0 chr1 109194468 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:48:0,48:1:56,41,0 chr1 109194510 . T C 65.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:52:0,52:1:65,53,0 chr1 109194550 . C T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:41:0,41:1:57,46,0 chr1 109197688 . A AGAGAGAGTGTGT 12.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:34:17,10:0.294118:12,0,50 chr1 109199830 . C T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:36:0,36:1:58,42,0 chr1 109199863 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:60:0,60:1:53,39,0 chr1 109202996 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:53:0,53:1:55,42,0 chr1 109228441 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:42:0,42:1:57,50,0 chr1 109235955 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:55:0,55:1:57,51,0 chr1 109250113 . A ACGC 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:59:27,28:0.474576:46,0,53 chr1 109251630 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:112:0,112:1:49,35,0 chr1 109252404 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:58:0,58:1:49,36,0 chr1 109252986 . T C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:72:0,72:1:58,40,0 chr1 109263820 . C A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:14:9,5:0.357143:43,0,59 chr1 109264212 . C T 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:89:43,46:0.516854:56,0,59 chr1 109264477 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:118:52,66:0.559322:53,0,48 chr1 109270398 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:30:15,14:0.466667:56,0,58 chr1 109270614 . TTCCCAGTCTTGGGG T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:20,26:0.565217:51,0,56 chr1 109272452 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:37:18,19:0.513514:53,0,64 chr1 109272592 . T TG 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:27:13,13:0.481481:48,0,66 chr1 109272630 . A G 61.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:51:27,24:0.470588:61,0,66 chr1 109272746 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:42:20,21:0.5:47,0,46 chr1 109273124 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:14,12:0.461538:47,0,56 chr1 109273554 . A C 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:154:1,153:0.993506:62,52,0 chr1 109294213 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:10:2,8:0.8:49,0,34 chr1 109294220 . C G 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:11:8,3:0.272727:37,0,52 chr1 109296211 . T C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:27:0,27:1:56,43,0 chr1 109296296 . C T 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:88:0,88:1:62,51,0 chr1 109296770 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:26:0,26:1:51,39,0 chr1 109296811 . A G 65.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:69:0,69:1:65,50,0 chr1 109342153 . T G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:37:0,37:1:51,40,0 chr1 109354481 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:90:0,90:1:59,46,0 chr1 109415413 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:30:0,30:1:53,41,0 chr1 109466812 . A C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:24:0,24:1:51,42,0 chr1 109467032 . AC A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:49:2,47:0.959184:48,34,0 chr1 109593836 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:41:0,41:1:59,44,0 chr1 109594646 . ATT A 5.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:10:3,4:0.4:3,0,13 chr1 109599567 . G A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:13:0,13:1:48,25,0 chr1 109606352 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:131:0,131:1:58,46,0 chr1 109625466 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:22,22:0.5:48,0,52 chr1 109626266 . C G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:92:0,92:1:56,46,0 chr1 109627335 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:47:0,47:1:56,41,0 chr1 109628274 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:49:0,49:1:56,41,0 chr1 109629083 . A C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:1,34:0.971429:52,41,0 chr1 109658958 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:25:0,25:1:52,31,0 chr1 109659077 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:56:0,56:1:48,35,0 chr1 109659187 . G T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:62:0,62:1:56,40,0 chr1 109659190 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:54:0,54:1:55,39,0 chr1 109668158 . C G 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:86:0,86:1:60,46,0 chr1 109668196 . C T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:0,49:1:55,40,0 chr1 109713453 . A G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:79:8,71:0.898734:47,40,0 chr1 109757882 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:112:63,49:0.4375:47,0,40 chr1 109759144 . AGT A 24.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:97:9,80:0.824742:24,0,20 chr1 109914244 . C A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:49:24,25:0.510204:43,0,47 chr1 109915612 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:54:27,27:0.5:57,0,65 chr1 109923716 . C A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:144:75,69:0.479167:46,0,55 chr1 109923844 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:152:78,73:0.480263:52,0,49 chr1 109924087 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:70:0,70:1:54,39,0 chr1 109924188 . C A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:39:17,22:0.564103:49,0,46 chr1 109925123 . A G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:68:0,68:1:54,43,0 chr1 110070303 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:37:22,15:0.405405:51,0,61 chr1 110150825 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:27:0,26:0.962963:58,49,0 chr1 110167097 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:129:0,129:1:58,47,0 chr1 110167098 . G A 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:126:0,126:1:58,43,0 chr1 110195674 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:132:78,54:0.409091:46,0,53 chr1 110198066 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:53:28,25:0.471698:50,0,52 chr1 110456232 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:59:26,32:0.542373:54,0,55 chr1 110518047 . T C 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:73:44,29:0.39726:45,0,54 chr1 110518440 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:44,36:0.45:47,0,53 chr1 110607591 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:12:0,12:1:51,30,0 chr1 110899207 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:42:0,42:1:56,38,0 chr1 110951572 . C T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:61:41,20:0.327869:45,0,60 chr1 111139496 . C T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:51:27,24:0.470588:60,0,64 chr1 111140136 . G GC 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:23,21:0.477273:50,0,50 chr1 111183591 . A G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:38:20,18:0.473684:46,0,55 chr1 111194561 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:49:23,26:0.530612:51,0,53 chr1 111194776 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:13,21:0.617647:53,0,49 chr1 111197149 . G GCAGGACAAA 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:36,19:0.306452:50,0,65 chr1 111197723 . C G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:44:0,44:1:53,43,0 chr1 111227801 . T G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:61:32,29:0.47541:53,0,53 chr1 111235619 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:13:0,13:1:47,27,0 chr1 111235703 . C T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:36:23,13:0.361111:42,0,57 chr1 111236202 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:14:5,9:0.642857:50,0,45 chr1 111242194 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:9,15:0.625:52,0,54 chr1 111314498 . C A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:14:7,7:0.5:41,0,55 chr1 111314532 . T C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:23:0,23:1:49,49,0 chr1 111314586 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:36:21,15:0.416667:55,0,68 chr1 111317713 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:52:29,23:0.442308:50,0,49 chr1 111319092 . T A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:16:0,16:1:57,41,0 chr1 111319219 . A G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:58:0,58:1:60,39,0 chr1 111319352 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:90:38,51:0.566667:47,0,54 chr1 111319452 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:100:56,44:0.44:48,0,48 chr1 111320330 . T G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:86:0,86:1:60,49,0 chr1 111324762 . G C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:26,19:0.422222:47,0,53 chr1 111351336 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:50:29,21:0.42:47,0,54 chr1 111414475 . C G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:30:0,30:1:54,47,0 chr1 111414623 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:36,26:0.419355:48,0,53 chr1 111414689 . G C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:79:38,41:0.518987:54,0,60 chr1 111415071 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:66:0,66:1:56,49,0 chr1 111421522 . G C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:56:23,32:0.571429:58,0,47 chr1 111423669 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:66:40,26:0.393939:48,0,55 chr1 111426672 . A G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:19:0,19:1:44,42,0 chr1 111426685 . G C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:6,13:0.684211:52,0,51 chr1 111427097 . A G 63.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:80:0,80:1:63,51,0 chr1 111442607 . G T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:12:0,12:1:47,29,0 chr1 111456057 . C A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:19:8,11:0.578947:50,0,56 chr1 111476035 . G A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:72:40,32:0.444444:46,0,59 chr1 111477601 . C A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:28:10,18:0.642857:54,0,54 chr1 111486567 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:121:62,59:0.487603:52,0,56 chr1 111486571 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:125:0,125:1:56,55,0 chr1 111500010 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:33:0,33:1:54,46,0 chr1 111500110 . A T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:39,18:0.315789:46,0,50 chr1 111500517 . G A 33.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:96:60,36:0.375:33,0,51 chr1 111563822 . G A 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:19:0,19:1:58,40,0 chr1 111695293 . A T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:17:9,8:0.470588:52,0,51 chr1 111727250 . G A 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:92:0,92:1:62,40,0 chr1 111755960 . A G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:21,22:0.511628:50,0,48 chr1 111756207 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:48:21,26:0.541667:51,0,42 chr1 111759597 . G A 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:9:6,3:0.333333:29,0,53 chr1 111766331 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:76:46,30:0.394737:50,0,62 chr1 111766350 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:73:48,25:0.342466:49,0,59 chr1 111778410 . T A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:20:12,8:0.4:51,0,62 chr1 111962370 . A G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:68:0,68:1:55,39,0 chr1 111988885 . C A 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:79:0,79:1:61,47,0 chr1 112455917 . C CT 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:33:14,19:0.575758:49,0,43 chr1 112456605 . G A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:62:0,62:1:60,38,0 chr1 112653574 . TA T 4.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:17:11,6:0.352941:3,0,43 chr1 112653575 . A T 25.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:11:0,11:1:24,0,5 chr1 112659795 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:36:0,36:1:58,47,0 chr1 112691834 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:26:0,26:1:57,40,0 chr1 112696856 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:61:0,61:1:56,44,0 chr1 112699866 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:53:0,53:1:57,38,0 chr1 112703607 . T A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:39:0,39:1:57,47,0 chr1 112712767 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:46:0,46:1:57,39,0 chr1 112713064 . T TTG 5.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:50:11,38:0.76:2,0,3 chr1 112911802 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:6,8:0.571429:53,0,51 chr1 112911949 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:22:8,14:0.636364:50,0,51 chr1 112913924 . A T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:130:75,55:0.423077:45,0,62 chr1 112918054 . CAATAAATA C 40.5 PASS . GT:GQ:DP:AD:VAF:PL 1/0:23:28:0,21:0.75:40,27,47 chr1 112918054 . CAATA C 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:28:0,7:0.25:40,27,29 chr1 113094302 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:13:0,13:1:47,31,0 chr1 113114470 . A C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:92:0,92:1:57,44,0 chr1 113114916 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:19,17:0.472222:48,0,58 chr1 113116265 . G A 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:32:17,15:0.46875:39,0,59 chr1 113116443 . ACT A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:65:46,19:0.292308:47,0,58 chr1 113649372 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:10:3,7:0.7:51,0,37 chr1 113682160 . A ATT 24.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:57:11,26:0.45614:24,0,32 chr1 113697697 . T TA 31.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:27:17,10:0.37037:31,0,53 chr1 113706760 . C T 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:17:12,5:0.294118:37,0,55 chr1 113724725 . C T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:34:11,23:0.676471:60,0,50 chr1 113738095 . A C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:20:11,9:0.45:53,0,62 chr1 113797334 . C CTAAA 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:29:15,14:0.482759:55,0,68 chr1 113812032 . T C 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:64:38,26:0.40625:43,0,52 chr1 113812320 . T G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:103:51,52:0.504854:50,0,54 chr1 113829906 . T G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:29:15,14:0.482759:49,0,58 chr1 113834471 . A G 36.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:15:11,4:0.266667:36,0,59 chr1 113834946 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:32:0,32:1:53,40,0 chr1 113881979 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:65:0,65:1:54,45,0 chr1 113900413 . C G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:71:0,71:1:60,47,0 chr1 113901277 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:56:3,53:0.946429:46,34,0 chr1 113962378 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:36:1,35:0.972222:58,40,0 chr1 114099063 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:59:33,26:0.440678:44,0,54 chr1 114398010 . CA C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:42:0,35:0.833333:51,44,0 chr1 114405659 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:96:0,96:1:58,45,0 chr1 114430807 . T C 42.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:15:0,15:1:42,28,0 chr1 114602082 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:25:0,25:1:53,43,0 chr1 114618519 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:15:4,10:0.666667:51,0,46 chr1 114625979 . A T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:19:9,10:0.526316:48,0,44 chr1 114684369 . CA C 23.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:47:19,23:0.489362:23,0,45 chr1 114705128 . TA T 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:38:26,12:0.315789:32,0,58 chr1 114706831 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:33,21:0.388889:47,0,61 chr1 114706980 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:14,20:0.588235:51,0,48 chr1 114707222 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:43:21,22:0.511628:57,0,66 chr1 114707407 . T C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:14,11:0.44:45,0,51 chr1 114758064 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:12:0,12:1:51,31,0 chr1 114855423 . GC G 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:14:0,14:1:42,38,0 chr1 114858515 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:16:0,16:1:49,34,0 chr1 115033402 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:91:0,91:1:55,45,0 chr1 115058994 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:26:0,26:1:48,36,0 chr1 115286692 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:142:78,64:0.450704:46,0,58 chr1 115300466 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:62:0,62:1:54,40,0 chr1 115642675 . T A 33.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:63:34,29:0.460317:33,0,51 chr1 115682319 . C A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:16,12:0.428571:49,0,55 chr1 115701256 . G A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:150:85,65:0.433333:53,0,61 chr1 115705169 . G A 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:48:0,48:1:57,47,0 chr1 115717911 . A T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:57:0,57:1:55,48,0 chr1 115725557 . GAAA G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:119:1,21:0.176471:42,30,33 chr1 115725557 . GAA G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:119:1,73:0.613445:42,30,0 chr1 115740722 . A G 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:102:0,102:1:62,48,0 chr1 115768346 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:120:0,120:1:56,42,0 chr1 115768577 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:51,40,0 chr1 115992231 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:26,24:0.48:46,0,50 chr1 116026909 . G C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:29:0,29:1:48,39,0 chr1 116031685 . G A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:83:50,33:0.39759:45,0,53 chr1 116035360 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:33:0,33:1:58,46,0 chr1 116062802 . C T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:81:53,28:0.345679:44,0,55 chr1 116128153 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:43:0,43:1:59,45,0 chr1 116133414 . A C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:12:0,12:1:50,29,0 chr1 116388603 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:28:18,10:0.357143:40,0,61 chr1 116389006 . C A 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:55:31,24:0.436364:38,0,53 chr1 116579508 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:92:43,49:0.532609:48,0,43 chr1 116599909 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:36:16,20:0.555556:44,0,50 chr1 116599910 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:40:19,20:0.5:45,0,53 chr1 116602362 . T TA 7.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:47:9,13:0.276596:6,0,15 chr1 116768525 . C A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:99:58,41:0.414141:49,0,58 chr1 116931218 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:84:1,83:0.988095:57,43,0 chr1 116944648 . G A 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:9:5,4:0.444444:37,0,45 chr1 116945088 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:72:0,72:1:54,51,0 chr1 116945089 . T A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:72:0,72:1:48,43,0 chr1 116967359 . G A 59.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:19:9,10:0.526316:59,0,56 chr1 116967365 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:17:7,10:0.588235:57,0,45 chr1 116985023 . GTCT G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:8,15:0.652174:48,0,56 chr1 116986836 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:95:51,44:0.463158:49,0,52 chr1 117017104 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:42:0,42:1:55,41,0 chr1 117060338 . C A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:43:0,43:1:56,47,0 chr1 117060566 . G T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:20,28:0.583333:50,0,46 chr1 117073657 . T C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:27:11,16:0.592593:54,0,59 chr1 117087927 . G C 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:79:50,29:0.367089:42,0,56 chr1 117088769 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:26:0,26:1:52,39,0 chr1 117091296 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:36:21,15:0.416667:53,0,64 chr1 117095344 . A G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:49:35,14:0.285714:40,0,53 chr1 117113466 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:70:0,70:1:55,44,0 chr1 117117986 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:16:0,16:1:49,28,0 chr1 117118132 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:101:56,45:0.445545:44,0,49 chr1 117147650 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:63:31,31:0.492063:50,0,49 chr1 117153415 . G A 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:7:3,4:0.571429:38,0,34 chr1 117180625 . C G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:29:15,14:0.482759:43,0,55 chr1 117414666 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:16:0,16:1:46,38,0 chr1 117877830 . C G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:19:0,19:1:50,35,0 chr1 118023330 . G A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:55:28,27:0.490909:52,0,60 chr1 118081058 . TACACAC T 35.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:15:0,11:0.733333:35,14,0 chr1 118101807 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:139:1,138:0.992806:56,41,0 chr1 118890895 . G A 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:31:20,11:0.354839:39,0,58 chr1 118923652 . A G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:80:50,30:0.375:49,0,51 chr1 119032915 . A G 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:80:55,25:0.3125:38,0,45 chr1 119082373 . C G 26.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:31:25,6:0.193548:26,0,47 chr1 119381101 . T C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:124:61,63:0.508065:45,0,51 chr1 119385057 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:29,25:0.462963:47,0,53 chr1 119514379 . T C 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:83:46,37:0.445783:38,0,38 chr1 119514535 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:102:54,47:0.460784:45,0,47 chr1 119514623 . C A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:56:0,56:1:50,49,0 chr1 119623203 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:20:11,9:0.45:42,0,58 chr1 119624058 . G A 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:92:63,29:0.315217:38,0,55 chr1 119669260 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:20,19:0.487179:50,0,58 chr1 119711922 . G C 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:127:0,127:1:63,44,0 chr1 119721034 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:37:13,24:0.648649:52,0,48 chr1 119724280 . C G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:33:0,33:1:51,40,0 chr1 119724921 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:89:54,35:0.393258:49,0,55 chr1 119724974 . GC G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:39:1,38:0.974359:50,46,0 chr1 119726944 . G C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:149:83,66:0.442953:47,0,53 chr1 119742923 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:127:63,64:0.503937:48,0,45 chr1 119748857 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:64:35,29:0.453125:52,0,63 chr1 119750744 . T C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:68:36,32:0.470588:54,0,52 chr1 119798480 . G T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:44:23,21:0.477273:49,0,53 chr1 119798613 . A C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:68:32,36:0.529412:45,0,44 chr1 119836055 . C T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:48:0,48:1:56,39,0 chr1 119837385 . T A 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:32:0,32:1:62,50,0 chr1 119841582 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:15:0,15:1:49,35,0 chr1 119844497 . G A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:20,11:0.354839:50,0,57 chr1 119895095 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:45,34:0.425:46,0,55 chr1 119935375 . C A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:27:13,14:0.518519:44,0,52 chr1 119969481 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:52,40,0 chr1 119969680 . G A 29.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:73:52,21:0.287671:29,0,50 chr1 120168929 . T C 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:53:21,32:0.603774:42,0,50 chr1 120436552 . C T 5.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:68:34,34:0.5:4,0,31 chr1 120436638 . AAG A 40.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:62:1,61:0.983871:40,42,0 chr1 120449388 . G A 37.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:30:10,20:0.666667:37,11,0 chr1 120449389 . A G 37.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:30:10,20:0.666667:36,12,0 chr1 120452139 . A T 14.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:22:19,3:0.136364:14,0,36 chr1 120452200 . T G 41.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:16:0,16:1:41,34,0 chr1 120455446 . A G 7.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:6:1,4:0.666667:6,24,0 chr1 120459334 . C G 32.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:11:0,11:1:32,16,0 chr1 120459346 . C G 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:25:16,9:0.36:28,0,35 chr1 120460584 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:40:0,40:1:42,38,0 chr1 120461377 . G C 25 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:6:0,6:1:24,26,0 chr1 120464486 . C T 26.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:70:34,36:0.514286:26,0,54 chr1 120466107 . C G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:38:19,19:0.5:52,0,53 chr1 120489894 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:128:60,68:0.53125:39,0,32 chr1 120491981 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:93:0,93:1:51,46,0 chr1 120493114 . C T 14.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:34:19,15:0.441176:14,0,19 chr1 120511751 . CT C 42.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:120:1,118:0.983333:42,40,0 chr1 120512604 . C T 31.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:34:0,34:1:31,21,0 chr1 120515057 . T C 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:73:48,25:0.342466:27,0,28 chr1 120517053 . G A 23.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:5:0,5:1:23,12,0 chr1 120517128 . T C 31.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:14:0,14:1:31,37,0 chr1 120520700 . G T 34.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:60:0,60:1:34,31,0 chr1 120530268 . G C 14.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:9:3,6:0.666667:13,0,23 chr1 120541859 . C T 29.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:8:0,8:1:29,22,0 chr1 120543123 . C T 11.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:58:43,15:0.258621:10,0,40 chr1 120544275 . CA C 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:78:43,35:0.448718:36,0,23 chr1 120545456 . AC A 7.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:38:21,17:0.447368:6,0,30 chr1 120548977 . C T 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:28:14,14:0.5:32,0,42 chr1 120548978 . G A 21 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:28:14,14:0.5:20,0,41 chr1 120578712 . C T 27.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:18:0,18:1:27,32,0 chr1 120641592 . C T 4.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:13:11,2:0.153846:2,0,37 chr1 120701202 . A G 3.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:7:1,6:0.857143:0,25,0 chr1 120724152 . A C 34.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:53:5,48:0.90566:31,1,0 chr1 120793153 . TC T 30.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:40:1,39:0.975:30,36,0 chr1 120793448 . A T 31.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:41:0,41:1:31,28,0 chr1 120805654 . G C 38.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:22:0,22:1:38,30,0 chr1 120810372 . A G 18.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:184:146,38:0.206522:18,0,35 chr1 120810608 . G A 16.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:23:20,3:0.130435:16,0,50 chr1 120814790 . C T 39 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:17:0,17:1:38,35,0 chr1 120816714 . G C 24.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:3:0,3:1:24,14,0 chr1 120822191 . A G 16.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:13:0,13:1:16,37,0 chr1 120824137 . G A 22.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:10:2,8:0.8:22,0,22 chr1 120889787 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:9:0,9:1:48,33,0 chr1 120964176 . G A 39.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:49:0,49:1:39,42,0 chr1 120972828 . G T 26 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:44:2,41:0.931818:26,20,0 chr1 120976614 . T C 30.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:35:6,29:0.828571:30,19,0 chr1 120977545 . T C 17 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:6:0,6:1:16,18,0 chr1 121088716 . A G 24.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:6:0,6:1:24,23,0 chr1 121088840 . G A 22 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:31:22,9:0.290323:22,0,46 chr1 121374097 . T C 15.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:3:1,2:0.666667:15,17,0 chr1 121374817 . C T 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:33:17,16:0.484848:38,0,40 chr1 121374827 . A G 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:34:0,34:1:41,54,0 chr1 143729645 . GCCCC G 15 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:24:4,2:0.0833333:11,3,29 chr1 143729645 . GCC G 15 PASS . GT:GQ:DP:AD:VAF:PL 1/0:2:24:4,2:0.0833333:11,5,28 chr1 143729645 . GC G 15 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:24:4,6:0.25:11,5,11 chr1 143729659 . CCCCCCCA C 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:19:15,4:0.210526:0,0,40 chr1 143729896 . C T 6.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:6:3,3:0.5:5,0,19 chr1 143729918 . C T 10.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:4:2,2:0.5:9,0,32 chr1 143750667 . G C 24.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:33:24,9:0.272727:24,0,43 chr1 143759745 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:20,13:0.393939:45,0,61 chr1 143884651 . G A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:31:13,18:0.580645:36,0,12 chr1 143885303 . G A 20.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:17:9,8:0.470588:20,0,45 chr1 144438071 . C T 18.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:53:34,19:0.358491:18,0,44 chr1 145241638 . G A 6.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:124:102,22:0.177419:5,0,27 chr1 145518970 . A G 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:91:0,91:1:60,54,0 chr1 145837609 . C T 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:75:50,25:0.333333:35,0,45 chr1 145847528 . G C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:87:57,29:0.333333:47,0,53 chr1 145872200 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:57:25,32:0.561404:59,0,59 chr1 145872549 . G C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:75:46,29:0.386667:47,0,53 chr1 145872788 . G C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:101:59,42:0.415842:50,0,54 chr1 145872994 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:61:0,61:1:57,40,0 chr1 145873487 . G A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:110:61,47:0.427273:42,0,52 chr1 145876257 . T G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:59:34,25:0.423729:37,0,52 chr1 145879427 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:28:16,12:0.428571:49,0,54 chr1 145899155 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:56:26,30:0.535714:53,0,51 chr1 145904824 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:13,16:0.551724:48,0,51 chr1 145957829 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:16:0,16:1:51,33,0 chr1 145978340 . C CTTT 21.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:27:1,17:0.62963:21,16,0 chr1 146067225 . C A 5.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:23:13,10:0.434783:3,0,7 chr1 146069569 . C T 26.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:12:0,12:1:26,29,0 chr1 146069742 . T C 4.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:9:3,6:0.666667:1,0,8 chr1 146074336 . T G 18.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:6:0,6:1:18,29,0 chr1 146074349 . T G 21.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:11:0,11:1:21,28,0 chr1 146121510 . A C 25.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:2:0,2:1:25,8,0 chr1 146126409 . G C 30.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:25:15,10:0.4:30,0,43 chr1 146127099 . T G 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:4:1,3:0.75:7,0,19 chr1 146134204 . T C 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:62:48,14:0.225806:0,0,26 chr1 146135471 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,37:1:47,46,0 chr1 146136322 . G C 28.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:26:0,26:1:28,34,0 chr1 146140007 . C T 24.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:6:4,2:0.333333:24,0,28 chr1 146228815 . G C 41 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:93:0,93:1:40,27,0 chr1 146966567 . G A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:16,10:0.384615:45,0,60 chr1 146969580 . C A 12.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:128:82,46:0.359375:12,0,23 chr1 146974762 . C A 37.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:16:4,12:0.75:37,26,0 chr1 146975926 . C G 24.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:49:26,23:0.469388:24,0,30 chr1 146983132 . T G 9.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:13:1,12:0.923077:9,12,0 chr1 146984765 . G A 16.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:10:7,3:0.3:16,0,33 chr1 146984882 . A G 30.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:25:12,13:0.52:30,0,25 chr1 146987910 . G C 25.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:14:2,12:0.857143:23,1,0 chr1 146989527 . A G 29.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:10:4,6:0.6:29,0,43 chr1 146989566 . C CT 25.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:15:9,6:0.4:25,0,55 chr1 146989687 . A G 11.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:160:134,25:0.15625:10,0,38 chr1 146994600 . T G 38.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:8:0,8:1:38,25,0 chr1 147167926 . C T 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:82:48,34:0.414634:38,0,49 chr1 147171976 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:65:0,65:1:55,50,0 chr1 147172001 . G A 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:104:52,52:0.5:57,0,56 chr1 147184461 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:8:4,4:0.5:47,0,60 chr1 147184518 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:57:36,21:0.368421:48,0,60 chr1 147201324 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:64:37,27:0.421875:52,0,55 chr1 147204802 . C T 23.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:21:17,4:0.190476:23,0,52 chr1 147208832 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:13:5,8:0.615385:51,0,56 chr1 147242742 . C G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/0:47:51:0,22:0.431373:55,55,55 chr1 147242742 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:51:0,29:0.568627:55,55,51 chr1 147242777 . G C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:57:34,23:0.403509:43,0,54 chr1 147252753 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:23,23:0.5:54,0,60 chr1 147252774 . C T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:18:7,11:0.611111:57,0,55 chr1 147264433 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:41:22,19:0.463415:49,0,57 chr1 147268843 . C G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:62:40,22:0.354839:42,0,46 chr1 147268917 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:15:6,9:0.6:59,0,59 chr1 147275490 . C T 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:40:18,22:0.55:57,0,53 chr1 147284549 . A AAAAC 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:16:1,15:0.9375:44,24,0 chr1 147287627 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:35:18,17:0.485714:53,0,62 chr1 147293770 . C G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:17:9,8:0.470588:52,0,66 chr1 147295381 . A G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:15:9,6:0.4:45,0,60 chr1 147631053 . C G 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:49,31,0 chr1 147643632 . T G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:115:73,42:0.365217:47,0,53 chr1 147647471 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:92:52,40:0.434783:47,0,50 chr1 147652507 . T G 62.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:60:0,60:1:62,46,0 chr1 147659350 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:32:0,32:1:54,53,0 chr1 147659386 . A T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:20,18:0.473684:53,0,55 chr1 147669798 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:9:2,7:0.777778:45,0,22 chr1 147759265 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:29:19,10:0.344828:51,0,64 chr1 147760632 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:14,34:0.708333:55,0,46 chr1 149002806 . G T 4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:3:1,2:0.666667:0,0,5 chr1 149003779 . C A 8.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:28:23,5:0.178571:7,0,38 chr1 149007176 . A T 22.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:4:0,4:1:22,27,0 chr1 149029846 . A G 14.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:92:41,51:0.554348:14,0,13 chr1 149029906 . G A 17.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:72:41,31:0.430556:17,0,15 chr1 149029915 . C T 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:53:32,21:0.396226:40,0,38 chr1 149032194 . G A 26.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:38:21,17:0.447368:26,0,50 chr1 149055830 . A C 11.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:16:14,2:0.125:10,0,38 chr1 149059379 . C A 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:20:14,6:0.3:41,0,70 chr1 149059475 . A G 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:16:12,4:0.25:30,0,48 chr1 149060044 . G T 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:24:9,15:0.625:33,0,44 chr1 149060926 . A AAC 3.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:41:21,18:0.439024:1,0,40 chr1 149061042 . A C 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:33:21,12:0.363636:38,0,48 chr1 149071644 . T C 32.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:4:0,4:1:32,17,0 chr1 149073857 . A G 7.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:47:36,11:0.234043:6,0,41 chr1 149075807 . A C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:56:36,20:0.357143:43,0,64 chr1 149077959 . G T 37 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:19:1,18:0.947368:36,35,0 chr1 149080142 . A G 12.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:58:31,27:0.465517:12,0,32 chr1 149784291 . C T 9.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:65:53,12:0.184615:9,0,30 chr1 149934520 . T C 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:42,34:0.447368:46,0,45 chr1 150067621 . A G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:21,14:0.4:44,0,54 chr1 150156231 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:17,16:0.484848:49,0,49 chr1 150226707 . CTCCTCT C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:79:2,76:0.962025:52,38,0 chr1 150226791 . G T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:38:0,38:1:58,40,0 chr1 150230711 . G GA 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:11:0,11:1:46,27,0 chr1 150268830 . G T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:38:16,22:0.578947:47,0,38 chr1 150286426 . C G 65.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:65:0,65:1:65,51,0 chr1 150286988 . A C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:20:10,10:0.5:48,0,52 chr1 150308112 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:55:0,55:1:52,37,0 chr1 150346396 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:45:29,16:0.355556:46,0,58 chr1 150352850 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:52:34,18:0.346154:43,0,58 chr1 150353012 . C G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:22:13,9:0.409091:56,0,70 chr1 150353021 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:21:14,7:0.333333:50,0,61 chr1 150464739 . A G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:38:21,17:0.447368:50,0,60 chr1 150551304 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:55:29,26:0.472727:49,0,53 chr1 150553568 . G C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:114:0,114:1:56,38,0 chr1 150553930 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:47:22,25:0.531915:52,0,61 chr1 150555614 . G GACAC 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:23:1,21:0.913043:47,34,0 chr1 150558532 . T C 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:120:58,62:0.516667:59,0,59 chr1 150558574 . G A 61 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:104:52,52:0.5:61,0,60 chr1 150558694 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:60:0,60:1:55,35,0 chr1 150578943 . T C 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:84:44,40:0.47619:43,0,51 chr1 150799227 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:41:0,41:1:48,34,0 chr1 150807080 . TCACACACACACA T 18.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:18:0,17:0.944444:18,0,35 chr1 150807279 . C T 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:100:0,100:1:62,50,0 chr1 150817318 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:22:14,8:0.363636:45,0,58 chr1 150826636 . A C 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:18:13,5:0.277778:35,0,57 chr1 150831800 . A C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:20,20:0.5:51,0,56 chr1 150852881 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:25:8,17:0.68:53,0,53 chr1 150876595 . A AC 11.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:60:26,9:0.15:11,0,42 chr1 150945156 . A G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:73:42,30:0.410959:44,0,49 chr1 150950623 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:64:31,33:0.515625:50,0,54 chr1 150963492 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:23:11,12:0.521739:47,0,55 chr1 150966140 . G A 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:43:0,43:1:61,57,0 chr1 150967881 . G T 59.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:53:28,25:0.471698:59,0,66 chr1 150967882 . C T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:52:27,25:0.480769:58,0,64 chr1 150967913 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:39:17,21:0.538462:57,0,62 chr1 150968905 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:42:0,42:1:48,37,0 chr1 150987874 . A C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:80:0,80:1:57,47,0 chr1 150997516 . T C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:67:0,67:1:55,43,0 chr1 150998101 . G T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:0,49:1:58,40,0 chr1 151001686 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:18,12:0.4:51,0,60 chr1 151002632 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:83:54,29:0.349398:50,0,56 chr1 151025464 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:40:0,40:1:50,41,0 chr1 151034063 . C A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:88:0,88:1:56,38,0 chr1 151046704 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:57:0,57:1:51,34,0 chr1 151047902 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:44:23,21:0.477273:50,0,46 chr1 151047993 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:41:18,23:0.560976:50,0,59 chr1 151054339 . C T 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:70:0,69:0.985714:58,40,0 chr1 151055758 . G T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:80:0,80:1:57,52,0 chr1 151132474 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:100:47,53:0.53:49,0,52 chr1 151133348 . C G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:32:10,22:0.6875:52,0,42 chr1 151134079 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:46:20,26:0.565217:46,0,46 chr1 151135661 . T G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:122:75,47:0.385246:47,0,45 chr1 151162103 . T TA 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:26:13,11:0.423077:32,0,57 chr1 151171581 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:65:35,30:0.461538:55,0,55 chr1 151236587 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:34:0,34:1:49,35,0 chr1 151238313 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:12:0,12:1:46,29,0 chr1 151239923 . C CCTT 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,29:0.878788:45,43,0 chr1 151266575 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:66:0,66:1:47,32,0 chr1 151285263 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:40:0,40:1:55,38,0 chr1 151315696 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:100:0,98:0.98:57,41,0 chr1 151343685 . G A 64.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:86:0,86:1:64,52,0 chr1 151365312 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:27:0,27:1:53,31,0 chr1 151369227 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:18:7,11:0.611111:51,0,49 chr1 151399662 . G A 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:110:67,43:0.390909:36,0,48 chr1 151400724 . T C 66.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:64:0,64:1:66,48,0 chr1 151401798 . TTC T 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:41:32,9:0.219512:35,0,55 chr1 151404772 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:73:0,73:1:55,54,0 chr1 151408844 . GA G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:42:22,20:0.47619:49,0,58 chr1 151412257 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:17:0,17:1:56,46,0 chr1 151423561 . A C 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:85:59,26:0.305882:41,0,56 chr1 151429569 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:35:0,35:1:56,49,0 chr1 151430655 . G A 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:89:60,28:0.314607:32,0,55 chr1 151442448 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:17:0,17:1:49,36,0 chr1 151459156 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:30:0,30:1:51,40,0 chr1 151535585 . A C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:45:0,45:1:58,50,0 chr1 151540419 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:78:1,77:0.987179:50,41,0 chr1 151562544 . A ATC 23.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:21:11,3:0.142857:23,0,21 chr1 151569623 . G T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:27:13,14:0.518519:54,0,59 chr1 151578844 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:21:14,7:0.333333:40,0,58 chr1 151693381 . CT C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:34:16,18:0.529412:38,0,51 chr1 151707487 . C T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:27:14,13:0.481481:54,0,59 chr1 151709091 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:120:65,55:0.458333:45,0,52 chr1 151714507 . T A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:55:0,55:1:56,43,0 chr1 151728869 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:29,33:0.532258:53,0,55 chr1 151760224 . A G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:24:0,24:1:59,48,0 chr1 151760859 . T G 36.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:31:0,31:1:36,22,0 chr1 151760921 . A AAAAAAAAT 8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:4:18:7,2:0.111111:6,4,23 chr1 151760921 . A AAAAAAAT 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:18:7,5:0.277778:6,0,23 chr1 151761566 . T TG 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:15,19:0.558824:49,0,55 chr1 151762531 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:27:13,14:0.518519:51,0,53 chr1 151770285 . T G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:17,20:0.540541:49,0,53 chr1 151775494 . A G 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:66:48,18:0.272727:30,0,45 chr1 151790358 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:54:24,30:0.555556:55,0,57 chr1 151790510 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:40:19,21:0.525:56,0,58 chr1 151790770 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:16,15:0.483871:47,0,56 chr1 151791339 . C T 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:82:52,30:0.365854:39,0,57 chr1 151814528 . G A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:145:94,51:0.351724:46,0,48 chr1 151817135 . C T 31.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:67:1,66:0.985075:31,28,0 chr1 151825819 . G A 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:78:50,28:0.358974:33,0,47 chr1 151830973 . G T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:103:56,47:0.456311:51,0,48 chr1 151831288 . G C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:24:12,12:0.5:56,0,66 chr1 151838750 . G A 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:29:18,11:0.37931:40,0,53 chr1 151847215 . AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG A 31.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:135:1,134:0.992593:31,23,0 chr1 151847822 . G C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:85:0,85:1:57,44,0 chr1 151847848 . T C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:68:43,25:0.367647:43,0,54 chr1 151853515 . G T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:90:50,40:0.444444:48,0,53 chr1 151895084 . G A 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:76:52,23:0.302632:39,0,67 chr1 151909409 . A C 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:42:32,10:0.238095:28,0,50 chr1 152107347 . C G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:81:48,33:0.407407:49,0,56 chr1 152107513 . T G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:138:0,138:1:58,44,0 chr1 152109445 . G C 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:80:0,80:1:64,47,0 chr1 152112508 . C G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:149:78,71:0.47651:47,0,48 chr1 152113029 . A C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:67:0,67:1:56,39,0 chr1 152154979 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:157:78,79:0.503185:51,0,56 chr1 152156589 . GTGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA G 16.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:131:51,80:0.610687:16,0,61 chr1 152213274 . G A 63.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:56:18,38:0.678571:63,47,0 chr1 152215086 . A C 31.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:60:0,60:1:31,33,0 chr1 152215113 . G A 26.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:157:134,23:0.146497:26,0,36 chr1 152215334 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:23:0,23:1:36,30,0 chr1 152215633 . T A 11.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:112:76,36:0.321429:10,0,17 chr1 152216444 . C T 24.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:61:36,25:0.409836:24,0,43 chr1 152216522 . C T 17.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:57:43,14:0.245614:17,0,28 chr1 152216579 . G C 20.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:9:0,9:1:20,23,0 chr1 152216766 . A G 19.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:2:0,2:1:19,15,0 chr1 152218206 . G A 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:10:4,6:0.6:13,0,18 chr1 152218244 . C T 18.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:21:10,11:0.52381:18,0,20 chr1 152218359 . G A 27.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:107:69,38:0.35514:27,0,45 chr1 152218469 . C T 27.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:127:77,50:0.393701:27,0,46 chr1 152219233 . C G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:85:48,37:0.435294:42,0,49 chr1 152219403 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:54:28,26:0.481481:53,0,55 chr1 152219638 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:47:25,22:0.468085:45,0,52 chr1 152219817 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:71:25,46:0.647887:48,0,31 chr1 152220079 . T C 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:44:31,13:0.295455:37,0,53 chr1 152220155 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:22,21:0.488372:49,0,57 chr1 152220211 . T C 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:35:0,35:1:62,52,0 chr1 152220349 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:51:27,24:0.470588:48,0,50 chr1 152220502 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:54:1,53:0.981481:55,41,0 chr1 152220576 . A G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:32:0,32:1:58,57,0 chr1 152220645 . G T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:49:24,25:0.510204:54,0,53 chr1 152220810 . G T 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:34:21,13:0.382353:56,0,63 chr1 152220815 . G T 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:34:21,13:0.382353:56,0,62 chr1 152221068 . A G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:52:26,26:0.5:59,0,60 chr1 152221071 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:49:0,49:1:50,45,0 chr1 152221375 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:60:32,28:0.466667:48,0,60 chr1 152221514 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:31:19,12:0.387097:43,0,56 chr1 152223083 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:23:13,10:0.434783:53,0,72 chr1 152223103 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:39:20,19:0.487179:52,0,62 chr1 152223252 . AT A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:33:1,32:0.969697:48,49,0 chr1 152224241 . C A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:58:0,58:1:46,36,0 chr1 152303673 . C T 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:50:17,33:0.66:40,0,40 chr1 152304223 . A G 5.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:57:40,17:0.298246:4,0,38 chr1 152304296 . C A 11.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:69:41,28:0.405797:11,0,49 chr1 152304395 . A G 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:44:27,17:0.386364:38,0,59 chr1 152304413 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:45:0,45:1:59,51,0 chr1 152304579 . C G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:64:8,56:0.875:43,26,0 chr1 152304692 . A G 23.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:88:47,41:0.465909:23,0,42 chr1 152304869 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:39,14:0.264151:45,0,57 chr1 152304920 . T C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:39,16:0.290909:46,0,59 chr1 152305241 . C A 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:54:36,18:0.333333:34,0,62 chr1 152305350 . A C 20 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:54:47,7:0.12963:19,0,44 chr1 152305958 . T G 29.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:7:4,3:0.428571:29,0,36 chr1 152306079 . T C 9.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:31:23,8:0.258065:9,0,45 chr1 152306213 . C A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:91:36,55:0.604396:53,0,47 chr1 152306380 . T G 24.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:131:98,33:0.251908:24,0,45 chr1 152307253 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:64:42,22:0.34375:43,0,54 chr1 152307365 . G C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:31,30:0.491803:44,0,49 chr1 152307444 . A G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:40,28:0.411765:45,0,55 chr1 152307556 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:61:28,33:0.540984:50,0,61 chr1 152307694 . C G 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:61:39,22:0.360656:27,0,50 chr1 152307789 . C G 8.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:47:38,9:0.191489:8,0,43 chr1 152307896 . G A 6.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:86:73,13:0.151163:4,0,25 chr1 152307995 . C G 23.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:121:77,44:0.363636:23,0,43 chr1 152308306 . A G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:75:0,73:0.973333:41,38,0 chr1 152308388 . A G 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:80:30,50:0.625:41,0,42 chr1 152308531 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:71:52,19:0.267606:37,0,55 chr1 152308532 . A G 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:71:51,20:0.28169:40,0,51 chr1 152308563 . G A 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:74:53,21:0.283784:39,0,55 chr1 152308752 . C G 23.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:106:78,28:0.264151:23,0,45 chr1 152308814 . A G 34.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:118:85,33:0.279661:34,0,52 chr1 152308828 . A C 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:134:99,34:0.253731:36,0,56 chr1 152309003 . G T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:88:0,88:1:53,47,0 chr1 152309058 . A T 8.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:64:45,18:0.28125:7,0,58 chr1 152309214 . C T 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:47:28,19:0.404255:44,0,59 chr1 152309472 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:46:23,23:0.5:50,0,51 chr1 152309791 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:15,16:0.516129:51,0,57 chr1 152309835 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:20,14:0.411765:46,0,68 chr1 152310441 . G T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:56:26,30:0.535714:48,0,51 chr1 152310760 . T C 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:74:38,36:0.486486:37,0,44 chr1 152310807 . C T 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:61:30,31:0.508197:30,0,58 chr1 152311386 . G C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:70:6,63:0.9:51,37,0 chr1 152312378 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:88:40,48:0.545455:49,0,50 chr1 152312623 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:56:26,29:0.517857:53,0,55 chr1 152313454 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:62:33,29:0.467742:54,0,55 chr1 152313526 . T C 65.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:65:78:36,42:0.538462:65,0,78 chr1 152313556 . C T 61.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:68:29,39:0.573529:61,0,65 chr1 152313564 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:60:32,28:0.466667:48,0,63 chr1 152313891 . C A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:55:29,26:0.472727:50,0,53 chr1 152313912 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:56:28,28:0.5:49,0,60 chr1 152350656 . G T 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:155:101,54:0.348387:37,0,44 chr1 152353256 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:52:31,21:0.403846:49,0,49 chr1 152354993 . C T 12.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:52:21,30:0.576923:11,0,51 chr1 152355026 . A G 9.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:73:31,42:0.575342:8,0,56 chr1 152355050 . T C 20.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:86:31,55:0.639535:20,0,56 chr1 152355059 . A G 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:82:32,50:0.609756:0,0,47 chr1 152355066 . T G 12.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:87:40,47:0.54023:11,0,50 chr1 152355935 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:44:2,42:0.954545:48,39,0 chr1 152356959 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:105:58,47:0.447619:55,0,55 chr1 152358764 . G A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:161:100,61:0.378882:43,0,54 chr1 152409586 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:22,12:0.352941:47,0,62 chr1 152409644 . C T 63 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:65:34,31:0.476923:62,0,75 chr1 152409672 . C T 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:83:41,42:0.506024:58,0,56 chr1 152412154 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:70:41,29:0.414286:44,0,56 chr1 152412283 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:29:13,16:0.551724:48,0,44 chr1 152511653 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:51:21,30:0.588235:52,0,52 chr1 152515503 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:87:53,34:0.390805:46,0,52 chr1 152515587 . C T 61.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:74:0,74:1:61,51,0 chr1 152579809 . C A 32.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:121:61,60:0.495868:32,0,43 chr1 152622929 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:108:58,50:0.462963:54,0,54 chr1 152664229 . C A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:66:35,31:0.469697:51,0,55 chr1 152686995 . T G 63.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:50:0,50:1:63,42,0 chr1 152687152 . C T 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:52:22,30:0.576923:39,0,33 chr1 152709204 . C CAGCTCTGGGGGCTGCTGT 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:51:2,34:0.666667:52,50,0 chr1 152719598 . G C 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:112:67,45:0.401786:36,0,52 chr1 152719996 . A C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:116:55,61:0.525862:56,0,57 chr1 152720036 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:95:49,46:0.484211:45,0,62 chr1 152720112 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:109:56,53:0.486239:51,0,54 chr1 152720305 . G T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:28,17:0.377778:49,0,57 chr1 152759960 . G C 63.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:102:0,102:1:63,46,0 chr1 152760091 . G A 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:96:63,33:0.34375:37,0,47 chr1 152760825 . T A 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:154:0,154:1:57,43,0 chr1 152787474 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:69:0,69:1:53,38,0 chr1 152787599 . A G 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:30:23,7:0.233333:27,0,50 chr1 152787617 . T C 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:22:17,5:0.227273:40,0,60 chr1 152787620 . A T 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:22:17,5:0.227273:41,0,57 chr1 152798113 . A G 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:29:11,18:0.62069:2,0,33 chr1 152798137 . T G 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:14:10,4:0.285714:36,0,32 chr1 152805392 . A G 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:80:50,30:0.375:42,0,56 chr1 152805488 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:56:31,25:0.446429:48,0,58 chr1 152827724 . C T 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:22:15,7:0.318182:35,0,49 chr1 152910134 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:57:28,29:0.508772:51,0,51 chr1 152910506 . C G 15.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:57:35,21:0.368421:15,0,37 chr1 152911132 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:77:40,37:0.480519:49,0,55 chr1 152911204 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:64:38,26:0.40625:51,0,63 chr1 152911235 . G C 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:69:38,31:0.449275:58,0,65 chr1 152971875 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:12,16:0.571429:52,0,56 chr1 152972118 . C T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:99:0,99:1:47,38,0 chr1 152985356 . C A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:151:9,142:0.940397:54,37,0 chr1 152985411 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:178:6,171:0.960674:44,32,0 chr1 153003019 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:46:0,46:1:57,43,0 chr1 153003182 . AGAGCCAGGCTGTACCAAGGTCCCT A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:109:0,109:1:50,38,0 chr1 153003287 . C A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:110:2,108:0.981818:43,37,0 chr1 153003353 . A G 39.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:99:0,99:1:39,36,0 chr1 153003465 . C G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:66:0,66:1:54,40,0 chr1 153032302 . C T 39.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:23:0,23:1:39,25,0 chr1 153032333 . T C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:45:0,45:1:55,39,0 chr1 153032372 . T C 66.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:80:0,80:1:66,52,0 chr1 153032377 . C T 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:90:0,90:1:61,46,0 chr1 153032507 . C T 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:178:1,177:0.994382:42,41,0 chr1 153056661 . C T 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:89:50,39:0.438202:36,0,51 chr1 153070856 . G A 11.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:37:32,5:0.135135:11,0,36 chr1 153070875 . A G 22 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:30:26,4:0.133333:21,0,36 chr1 153093596 . T C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:166:93,72:0.433735:43,0,44 chr1 153093786 . T C 35.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:176:0,176:1:35,33,0 chr1 153112553 . G T 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:119:70,49:0.411765:33,0,53 chr1 153112573 . C T 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:138:81,57:0.413043:38,0,54 chr1 153112675 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:292:152,140:0.479452:47,0,49 chr1 153112756 . A C 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:105:51,54:0.514286:35,0,36 chr1 153150144 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:94:53,41:0.43617:50,0,56 chr1 153205017 . A C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:72:42,30:0.416667:41,0,41 chr1 153218114 . G GT 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,21:0.954545:54,40,0 chr1 153218459 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:53:0,53:1:54,43,0 chr1 153261012 . C CGGCGGT 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:71:43,25:0.352113:48,0,57 chr1 153261225 . A C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:96:46,50:0.520833:50,0,56 chr1 153261515 . A ACTCTGGCGGCGG 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:92:7,58:0.630435:50,50,0 chr1 153261819 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:70:36,34:0.485714:44,0,46 chr1 153304947 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:66:39,27:0.409091:50,0,52 chr1 153340568 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:56:36,20:0.357143:41,0,55 chr1 153341677 . C A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:105:63,41:0.390476:42,0,51 chr1 153343103 . A G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:39:0,39:1:56,51,0 chr1 153347858 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:31:19,12:0.387097:56,0,66 chr1 153347896 . T G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:41:21,20:0.487805:56,0,66 chr1 153347925 . G A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:21,25:0.543478:51,0,54 chr1 153360868 . CGGCCACGGCCACAGTCATGGT C 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:16:9,7:0.4375:33,0,52 chr1 153390148 . G A 26.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:51:40,11:0.215686:26,0,53 chr1 153418066 . G C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:21:10,11:0.52381:49,0,58 chr1 153419253 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:46,38:0.452381:45,0,55 chr1 153419310 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:34:16,18:0.529412:49,0,45 chr1 153439916 . T G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:100:0,100:1:55,46,0 chr1 153458930 . C G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:50:0,50:1:53,38,0 chr1 153561422 . A G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:30:0,30:1:41,37,0 chr1 153561551 . C T 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:110:72,38:0.345455:36,0,50 chr1 153631553 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:61:0,60:0.983607:48,33,0 chr1 153636563 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:41:22,19:0.463415:53,0,53 chr1 153663995 . CT C 19.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:18:7,11:0.611111:19,0,62 chr1 153664384 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:87:46,41:0.471264:49,0,56 chr1 153688038 . AC A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:6,12:0.666667:44,0,53 chr1 153693443 . T TC 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:56:24,31:0.553571:50,0,59 chr1 153752252 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:14,12:0.461538:50,0,65 chr1 153767809 . G A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:157:84,73:0.464968:43,0,47 chr1 153770758 . T C 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:127:71,56:0.440945:44,0,50 chr1 153772652 . G C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:165:82,83:0.50303:49,0,55 chr1 153775140 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:63:34,29:0.460317:50,0,53 chr1 153775743 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:80:42,38:0.475:53,0,53 chr1 153777731 . C CCTT 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:83:1,80:0.963855:52,51,0 chr1 153777738 . TC T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:89:3,86:0.966292:48,40,0 chr1 153778174 . G A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:118:49,68:0.576271:57,0,58 chr1 153816451 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:161:86,74:0.459627:43,0,56 chr1 153933921 . A G 28.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:2:0,2:1:27,9,0 chr1 153941294 . A G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:17,13:0.433333:46,0,55 chr1 153942024 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:198:108,90:0.454545:53,0,51 chr1 153944380 . C G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:88:48,40:0.454545:41,0,46 chr1 153982198 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:42,33:0.44:45,0,54 chr1 154089379 . T G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:13:0,13:1:47,33,0 chr1 154135911 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:37,25:0.403226:46,0,53 chr1 154169432 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:48:0,48:1:53,41,0 chr1 154173056 . C G 63.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:100:0,100:1:63,48,0 chr1 154254105 . A C 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:46:0,46:1:61,46,0 chr1 154254816 . G GT 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:48:9,27:0.5625:30,0,5 chr1 154323600 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:75:0,75:1:56,44,0 chr1 154435956 . C A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:14,15:0.517241:48,0,54 chr1 154454042 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:14,15:0.517241:48,0,51 chr1 154454471 . T A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:63:36,27:0.428571:49,0,60 chr1 154454574 . G A 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:105:68,37:0.352381:35,0,46 chr1 154465420 . T C 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:21:0,21:1:58,41,0 chr1 154484130 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:13,19:0.59375:48,0,52 chr1 154486721 . C G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:45:0,45:1:59,51,0 chr1 154495734 . TA T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:67:4,60:0.895522:48,41,0 chr1 154501655 . C G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:46:0,46:1:50,28,0 chr1 154507181 . C CAT 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:69:0,67:0.971014:55,58,0 chr1 154532741 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:52,38,0 chr1 154544095 . T C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:69:0,69:1:58,41,0 chr1 154555577 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:18:12,6:0.333333:41,0,59 chr1 154569616 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:47:23,24:0.510638:50,0,59 chr1 154570217 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:25:12,13:0.52:49,0,46 chr1 154572175 . G T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:78:39,39:0.5:49,0,48 chr1 154589449 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:64:0,64:1:54,34,0 chr1 154590141 . A AC 9.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:89:52,15:0.168539:9,0,29 chr1 154590149 . G C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:87:4,75:0.862069:45,36,0 chr1 154590153 . C CA 22.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:86:33,35:0.406977:22,0,36 chr1 154601491 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:96:51,45:0.46875:50,0,47 chr1 154602344 . T C 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:89:0,89:1:60,48,0 chr1 154602564 . C T 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:118:0,117:0.991525:59,36,0 chr1 154608828 . A G 19.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:84:28,39:0.464286:19,0,53 chr1 154627896 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:54:0,54:1:53,47,0 chr1 154627906 . C T 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:53:24,29:0.54717:59,0,63 chr1 154772376 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:14,23:0.621622:49,0,52 chr1 154822220 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:76:41,35:0.460526:40,0,45 chr1 154868040 . C A 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:76:50,26:0.342105:39,0,53 chr1 154869723 . G GGCTGCTGCTGCTGCT 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/0:15:124:17,22:0.177419:47,18,44 chr1 154869723 . G GGCTGCTGCTGCTGCTGCT 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:124:17,54:0.435484:47,18,39 chr1 154946604 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:53:31,22:0.415094:49,0,55 chr1 154970548 . G A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:17:9,8:0.470588:46,0,54 chr1 155011063 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:14,17:0.548387:51,0,58 chr1 155015050 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:85:46,39:0.458824:52,0,63 chr1 155016481 . A G 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:142:99,43:0.302817:32,0,45 chr1 155033615 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:93:53,40:0.430108:49,0,41 chr1 155034523 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:111:53,58:0.522523:49,0,46 chr1 155047234 . A C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:69:0,69:1:56,43,0 chr1 155054466 . A C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:46:0,46:1:56,42,0 chr1 155060841 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:37:16,20:0.540541:53,0,53 chr1 155134074 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:106:56,50:0.471698:47,0,45 chr1 155140628 . G T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:14:7,7:0.5:45,0,45 chr1 155169753 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:30:0,30:1:55,46,0 chr1 155175183 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:47:23,24:0.510638:45,0,50 chr1 155177242 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:32:0,32:1:56,42,0 chr1 155182015 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:103:57,46:0.446602:49,0,55 chr1 155183830 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:95:55,40:0.421053:53,0,60 chr1 155188692 . C G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:86:0,85:0.988372:53,46,0 chr1 155189575 . T G 35.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:9:0,9:1:35,39,0 chr1 155189576 . C G 32.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:9:0,9:1:32,28,0 chr1 155189577 . T G 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:10:0,9:0.9:36,42,0 chr1 155190591 . T G 18.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:3:1,2:0.666667:18,18,0 chr1 155192276 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:136:0,136:1:50,38,0 chr1 155202234 . T G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:29:15,14:0.482759:45,0,53 chr1 155206456 . G A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:46:19,27:0.586957:58,0,58 chr1 155207078 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:64:31,33:0.515625:56,0,56 chr1 155212373 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:60:0,60:1:46,30,0 chr1 155235878 . G T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:121:0,121:1:57,45,0 chr1 155236377 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:188:90,98:0.521277:47,0,47 chr1 155236550 . T G 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:101:54,47:0.465347:44,0,52 chr1 155239569 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:36:14,22:0.611111:51,0,53 chr1 155248377 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:124:61,63:0.508065:57,0,55 chr1 155260340 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:108:61,47:0.435185:50,0,61 chr1 155261754 . T G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:78:37,41:0.525641:48,0,49 chr1 155277796 . A G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:119:70,49:0.411765:48,0,60 chr1 155285819 . G T 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:91:51,40:0.43956:47,0,54 chr1 155290559 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:93:48,43:0.462366:52,0,60 chr1 155290592 . G T 59.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:145:68,77:0.531034:59,0,63 chr1 155295386 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:88:43,45:0.511364:57,0,57 chr1 155318045 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:51:30,21:0.411765:44,0,53 chr1 155324483 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:23:0,23:1:56,50,0 chr1 155324981 . A G 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:44:0,44:1:58,33,0 chr1 155408334 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:15,10:0.4:47,0,61 chr1 155438844 . T C 63.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:179:0,179:1:63,55,0 chr1 155562525 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:12:0,12:1:51,34,0 chr1 155562534 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:11:0,11:1:47,27,0 chr1 155562541 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:11:0,11:1:56,37,0 chr1 155562550 . T C 40.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:14:0,14:1:40,39,0 chr1 155611966 . A G 34.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:34:0,34:1:34,25,0 chr1 155660173 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:90:46,44:0.488889:45,0,47 chr1 155688145 . C T 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:60:39,21:0.35:41,0,55 chr1 155688294 . T C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:58:32,26:0.448276:48,0,44 chr1 155765794 . C T 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:58:36,22:0.37931:42,0,54 chr1 155766110 . C T 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:92:56,36:0.391304:32,0,47 chr1 155785306 . G A 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:36:0,36:1:59,46,0 chr1 155814382 . C T 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:47:31,16:0.340426:40,0,60 chr1 155815787 . CAACT C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:51:0,51:1:54,45,0 chr1 155868074 . G C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:77:0,77:1:57,42,0 chr1 155868476 . T C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:72:0,72:1:58,42,0 chr1 155900625 . G A 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:35:0,35:1:62,54,0 chr1 155910782 . C G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:62:0,62:1:52,37,0 chr1 155914364 . GA G 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:13:4,9:0.692308:7,0,13 chr1 155929334 . C T 23.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:58:43,15:0.258621:23,0,52 chr1 155933617 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:23:10,13:0.565217:55,0,52 chr1 155934386 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:126:0,126:1:55,42,0 chr1 155942690 . G T 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:68:40,28:0.411765:58,0,58 chr1 155942695 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:69:0,69:1:50,51,0 chr1 155958441 . T C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:36:18,18:0.5:41,0,56 chr1 155978084 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:45:0,45:1:52,36,0 chr1 156041653 . T C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:61:0,61:1:43,34,0 chr1 156076550 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:16,13:0.448276:43,0,53 chr1 156126585 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:63:38,25:0.396825:50,0,60 chr1 156126626 . T G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:63:39,24:0.380952:46,0,59 chr1 156129878 . T G 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:66:45,21:0.318182:38,0,53 chr1 156135237 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:105:57,48:0.457143:49,0,51 chr1 156135818 . G T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:21:11,10:0.47619:44,0,50 chr1 156136137 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:154:72,82:0.532468:56,0,54 chr1 156136394 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:185:94,91:0.491892:51,0,52 chr1 156137072 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:102:51,51:0.5:51,0,54 chr1 156176427 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:130:73,57:0.438462:46,0,47 chr1 156176738 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:35,27:0.435484:47,0,50 chr1 156199819 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:34,22:0.392857:47,0,51 chr1 156225542 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:19,19:0.5:52,0,57 chr1 156232382 . A G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:38:0,38:1:47,35,0 chr1 156236330 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:83:49,34:0.409639:49,0,48 chr1 156250815 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:36:17,19:0.527778:53,0,56 chr1 156258981 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:24:11,13:0.541667:55,0,60 chr1 156285844 . C G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:112:73,38:0.339286:43,0,49 chr1 156294857 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:159:82,77:0.484277:55,0,59 chr1 156366253 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:22:10,12:0.545455:51,0,57 chr1 156377340 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:117:67,49:0.418803:46,0,53 chr1 156378043 . T A 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:135:84,51:0.377778:32,0,53 chr1 156381908 . G A 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:106:71,35:0.330189:42,0,51 chr1 156382222 . T C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:80:48,32:0.4:46,0,53 chr1 156384502 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:106:51,55:0.518868:53,0,55 chr1 156384556 . T TC 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:117:76,40:0.34188:49,0,64 chr1 156384575 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:102:0,102:1:50,50,0 chr1 156404640 . C CT 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:35:19,15:0.428571:48,0,64 chr1 156429594 . T TACC 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:15:5,8:0.533333:32,0,46 chr1 156476450 . C A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:56:34,22:0.392857:40,0,51 chr1 156477111 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:75:41,34:0.453333:50,0,50 chr1 156480948 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:96:63,33:0.34375:53,0,60 chr1 156528881 . T A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:42:23,19:0.452381:46,0,53 chr1 156530177 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:70:41,29:0.414286:45,0,51 chr1 156531114 . T C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:18,10:0.357143:46,0,57 chr1 156533749 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:41:0,41:1:56,40,0 chr1 156550381 . T A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:37:0,37:1:56,41,0 chr1 156551688 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:37:19,18:0.486486:46,0,50 chr1 156556595 . C G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:97:57,40:0.412371:47,0,57 chr1 156556652 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:95:0,95:1:56,52,0 chr1 156562552 . T G 38 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:46:0,46:1:37,37,0 chr1 156563116 . C A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:16:0,16:1:55,40,0 chr1 156563185 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:65:0,64:0.984615:58,41,0 chr1 156563641 . G T 26.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:79:54,25:0.316456:26,0,50 chr1 156564733 . A C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:59:25,34:0.576271:51,0,61 chr1 156566341 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:19:0,19:1:51,49,0 chr1 156566429 . G C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:60:0,60:1:60,40,0 chr1 156566459 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:91:0,91:1:60,41,0 chr1 156566561 . A G 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:43:2,37:0.860465:41,30,0 chr1 156569362 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:38:0,38:1:50,41,0 chr1 156582056 . A G 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:41:31,10:0.243902:33,0,50 chr1 156586529 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:88:47,41:0.465909:51,0,53 chr1 156591859 . G C 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:89:0,88:0.988764:61,52,0 chr1 156592216 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:25:0,25:1:54,35,0 chr1 156592351 . G A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:61:0,61:1:57,48,0 chr1 156592679 . C A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:155:78,77:0.496774:49,0,46 chr1 156593583 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:57:0,57:1:56,45,0 chr1 156593934 . A C 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:81:0,81:1:59,49,0 chr1 156594021 . G A 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:76:0,76:1:61,46,0 chr1 156594060 . C T 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:48:1,47:0.979167:62,48,0 chr1 156594106 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:19:0,19:1:53,47,0 chr1 156594111 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:13:8,5:0.384615:48,0,61 chr1 156595257 . A AAC 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:103:1,101:0.980583:56,52,0 chr1 156624864 . C A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:25,15:0.375:42,0,57 chr1 156652460 . G A 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:60:40,20:0.333333:32,0,51 chr1 156657128 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:30:0,30:1:55,38,0 chr1 156658204 . T C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:119:80,39:0.327731:47,0,60 chr1 156658297 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:33:8,25:0.757576:47,0,43 chr1 156669844 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:25,36:0.580645:47,0,50 chr1 156669961 . G A 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:64:0,63:0.984375:60,47,0 chr1 156670364 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:77:0,76:0.987013:56,40,0 chr1 156670516 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:56:26,30:0.535714:54,0,53 chr1 156670711 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:43,37:0.4625:48,0,50 chr1 156670789 . C G 29.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:70:42,27:0.385714:29,0,48 chr1 156670886 . G A 64.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:97:0,97:1:64,53,0 chr1 156676876 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:34:0,34:1:51,40,0 chr1 156724232 . G T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:78:34,44:0.564103:55,0,49 chr1 156735801 . G C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:94:0,94:1:57,43,0 chr1 156736767 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:78:0,78:1:57,47,0 chr1 156737983 . T G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:22:0,22:1:55,44,0 chr1 156738452 . C T 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:63:28,35:0.555556:48,0,46 chr1 156743720 . C T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:69:1,68:0.985507:60,48,0 chr1 156768177 . C T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:83:34,48:0.578313:53,0,47 chr1 156782256 . C G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:0,31:1:56,44,0 chr1 156815190 . T C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:68:34,34:0.5:41,0,44 chr1 156815825 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:159:99,60:0.377358:47,0,60 chr1 156815970 . AG A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:82:40,42:0.512195:48,0,48 chr1 156815979 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:43,41:0.488095:50,0,49 chr1 156815987 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:86:46,40:0.465116:48,0,55 chr1 156844235 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:106:65,40:0.377358:48,0,59 chr1 156844686 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:57:24,33:0.578947:57,0,54 chr1 156865794 . A T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:79:33,46:0.582278:53,0,55 chr1 156868055 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:58:25,33:0.568965:55,0,53 chr1 156875700 . AGT A 22.8 PASS . GT:GQ:DP:AD:VAF:PL 1/0:7:241:3,176:0.73029:21,9,27 chr1 156875700 . A AGTGT 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:241:3,33:0.136929:21,9,22 chr1 156879117 . CA C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:74:0,74:1:52,40,0 chr1 156879983 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:70:34,36:0.514286:52,0,50 chr1 156905300 . G A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:31:0,31:1:56,45,0 chr1 156905305 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:31:0,31:1:47,32,0 chr1 156905315 . C A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:43:0,43:1:54,47,0 chr1 156907665 . T C 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:82:0,82:1:63,52,0 chr1 156907990 . G T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:235:125,109:0.46383:51,0,55 chr1 156913204 . G C 64.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:67:0,67:1:64,50,0 chr1 156913423 . C A 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:159:100,58:0.36478:39,0,47 chr1 156913833 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:47:24,23:0.489362:49,0,58 chr1 156914792 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:68:34,34:0.5:52,0,55 chr1 156920880 . T C 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:88:55,32:0.363636:36,0,49 chr1 156921712 . AAC A 8.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:58:7,48:0.827586:7,0,15 chr1 156925033 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:25,32:0.561404:48,0,51 chr1 156926577 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:74:47,27:0.364865:49,0,63 chr1 156926581 . C CT 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:67:36,28:0.41791:38,0,61 chr1 156932430 . G A 26.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:34:27,7:0.205882:26,0,53 chr1 156932467 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:55,27:0.329268:46,0,60 chr1 156932489 . T G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:92:63,29:0.315217:54,0,65 chr1 156937239 . C T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:23,11:0.323529:47,0,59 chr1 156937289 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:69:41,28:0.405797:54,0,61 chr1 156939511 . T A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:34:15,19:0.558824:50,0,58 chr1 156939903 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:41:22,19:0.463415:48,0,55 chr1 156941100 . GCTCGTCTT G 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:53:36,17:0.320755:41,0,52 chr1 156944448 . CCATTCATT C 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:83:29,53:0.638554:44,0,54 chr1 156945246 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:12,16:0.551724:48,0,56 chr1 156969275 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:42:22,20:0.47619:47,0,60 chr1 156969383 . C T 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:41:0,41:1:56,44,0 chr1 156978161 . A T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:12,18:0.6:48,0,58 chr1 156984475 . C T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:55:0,54:0.981818:53,40,0 chr1 156986469 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:89:54,35:0.393258:52,0,58 chr1 157046444 . CCT C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:51:16,35:0.686275:51,0,53 chr1 157092947 . C G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:90:50,39:0.433333:44,0,46 chr1 157099362 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:86:42,44:0.511628:52,0,44 chr1 157124922 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:76:47,29:0.381579:50,0,56 chr1 157515771 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:69:28,41:0.594203:51,0,50 chr1 157519726 . T G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:98:63,35:0.357143:46,0,58 chr1 157539092 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:21,13:0.382353:49,0,56 chr1 157539235 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:93:53,40:0.430108:54,0,59 chr1 157544307 . A G 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:24,30:0.555556:50,0,48 chr1 157588155 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:14:5,9:0.642857:43,0,57 chr1 157588167 . T C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:15:4,11:0.733333:46,0,48 chr1 157597919 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:44:28,15:0.340909:49,0,62 chr1 157597961 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:27,16:0.372093:49,0,59 chr1 157697149 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:50:26,24:0.48:47,0,57 chr1 157698406 . G A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:47:35,12:0.255319:31,0,50 chr1 157698600 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:42:0,42:1:51,40,0 chr1 157698637 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:11,15:0.576923:46,0,53 chr1 157700500 . C G 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:104:65,38:0.365385:45,0,51 chr1 157748535 . T G 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:52:31,21:0.403846:51,0,54 chr1 157748640 . T G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:21,14:0.4:48,0,53 chr1 157748855 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:61:30,31:0.508197:51,0,51 chr1 157748990 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:52:30,22:0.423077:48,0,58 chr1 157770396 . GTC G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:1,24:0.96:42,40,0 chr1 157770399 . A G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:24:0,24:1:46,36,0 chr1 157798210 . G C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:32,16:0.333333:44,0,55 chr1 157833189 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:64:36,28:0.4375:52,0,51 chr1 158084589 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:31,31:0.5:54,0,53 chr1 158087843 . C G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:110:56,54:0.490909:51,0,55 chr1 158087901 . A C 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:49:0,49:1:60,55,0 chr1 158088476 . CTTT C 11.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:9:0,3:0.333333:7,0,18 chr1 158088476 . CT C 11.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:9:0,3:0.333333:7,0,28 chr1 158089434 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:23:9,13:0.565217:56,0,53 chr1 158255035 . C T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:24:11,13:0.541667:46,0,49 chr1 158288048 . A C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:59:29,30:0.508475:51,0,53 chr1 158328170 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:10,12:0.545455:50,0,46 chr1 158328903 . A C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:22:11,11:0.5:44,0,52 chr1 158354635 . A G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:34:0,33:0.970588:54,37,0 chr1 158398751 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:40:22,18:0.45:45,0,55 chr1 158399056 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:38,23:0.377049:46,0,44 chr1 158420462 . T G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:80:43,37:0.4625:49,0,55 chr1 158420711 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:97:53,43:0.443299:53,0,58 chr1 158466509 . T C 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:21:14,7:0.333333:35,0,50 chr1 158607377 . A T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:19,16:0.457143:46,0,63 chr1 158612856 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:155:92,63:0.406452:52,0,55 chr1 158617600 . C T 14.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:32:26,5:0.15625:14,0,44 chr1 158617994 . T G 38.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:10:0,10:1:38,19,0 chr1 158618068 . G A 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:8:6,2:0.25:30,0,49 chr1 158623145 . G A 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:98:68,30:0.306122:38,0,53 chr1 158627717 . G C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:87:49,38:0.436782:49,0,50 chr1 158636659 . G T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:136:84,52:0.382353:44,0,49 chr1 158637998 . T G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:63:0,63:1:56,38,0 chr1 158642446 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:125:72,53:0.424:52,0,58 chr1 158644408 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:31,24:0.436364:49,0,47 chr1 158649938 . A C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:51:0,51:1:53,38,0 chr1 158656588 . C T 17.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:41:31,9:0.219512:17,0,51 chr1 158661381 . A C 18.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:113:80,33:0.292035:18,0,38 chr1 158669811 . A G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:20,21:0.512195:46,0,60 chr1 158674315 . T A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:33:15,18:0.545455:53,0,49 chr1 158676305 . G T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:33,23:0.410714:45,0,51 chr1 158677705 . A T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:140:0,138:0.985714:50,34,0 chr1 158677780 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:109:64,45:0.412844:50,0,52 chr1 158677841 . T A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:31:0,31:1:53,47,0 chr1 158681604 . C T 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:88:52,36:0.409091:41,0,51 chr1 158683354 . A G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:54:35,19:0.351852:41,0,52 chr1 158685246 . G A 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:150:0,150:1:57,45,0 chr1 158685372 . C A 63.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:83:0,83:1:63,46,0 chr1 158686491 . T C 22 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:2:0,2:1:21,7,0 chr1 158686557 . C CAGAG 15.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:4:1,3:0.75:14,9,0 chr1 158754802 . C G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:12,10:0.454545:43,0,54 chr1 158755505 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:55,49:0.471154:49,0,54 chr1 158765805 . C T 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:66:47,19:0.287879:28,0,49 chr1 158765901 . T C 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:39,15:0.277778:46,0,58 chr1 158765950 . A G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:36,14:0.28:44,0,59 chr1 158766102 . A G 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:85:55,29:0.341176:39,0,52 chr1 158766425 . G A 63.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:63:0,63:1:63,43,0 chr1 158766655 . C T 25.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:57:40,17:0.298246:25,0,56 chr1 158766727 . A T 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:16:12,4:0.25:31,0,48 chr1 158776822 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:43:27,16:0.372093:52,0,62 chr1 158777057 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:69:32,37:0.536232:54,0,51 chr1 158844029 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:106:66,40:0.377358:48,0,53 chr1 158939374 . C A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:39:22,17:0.435897:52,0,61 chr1 158941972 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:26:8,18:0.692308:50,0,45 chr1 158987791 . C T 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:33:24,9:0.272727:35,0,56 chr1 159000343 . A G 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:24:16,8:0.333333:41,0,49 chr1 159015883 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:44:24,20:0.454545:54,0,58 chr1 159016687 . G C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:46:27,19:0.413043:50,0,42 chr1 159020457 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:20,14:0.411765:48,0,62 chr1 159032511 . T C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:37:22,15:0.405405:57,0,68 chr1 159032587 . C A 31.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:88:64,24:0.272727:31,0,55 chr1 159032599 . T A 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:87:64,23:0.264368:38,0,57 chr1 159194053 . C G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:45:22,23:0.511111:44,0,44 chr1 159199851 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:107:0,107:1:50,49,0 chr1 159204893 . T C 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:151:97,54:0.357616:37,0,55 chr1 159205564 . G A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:111:0,111:1:59,44,0 chr1 159205737 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:108:50,58:0.537037:55,0,57 chr1 159432794 . G GT 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:109:60,49:0.449541:50,0,58 chr1 159432905 . A C 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:110:63,47:0.427273:45,0,55 chr1 159439743 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:46:17,29:0.630435:56,0,51 chr1 159439944 . G T 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:63:0,63:1:60,40,0 chr1 159440067 . A G 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:66:42,24:0.363636:39,0,54 chr1 159535507 . C T 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:67:42,25:0.373134:37,0,54 chr1 159588468 . A G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:73:0,73:1:58,41,0 chr1 159809193 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:90:0,89:0.988889:54,42,0 chr1 159815494 . C G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:54:0,54:1:52,39,0 chr1 159815580 . T C 63.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:50:0,50:1:63,48,0 chr1 159815635 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:41:0,41:1:55,39,0 chr1 159826858 . T G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:54:24,30:0.555556:56,0,58 chr1 159833212 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:90:47,43:0.477778:51,0,51 chr1 159855177 . G C 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:125:77,46:0.368:34,0,55 chr1 159855271 . G C 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:72:46,26:0.361111:43,0,56 chr1 159858338 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:24:5,19:0.791667:51,0,37 chr1 159858956 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:15:7,8:0.533333:49,0,52 chr1 159872589 . A G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:47:25,22:0.468085:42,0,51 chr1 159884602 . C A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:36:11,25:0.694444:41,0,41 chr1 159886639 . C T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:99:54,45:0.454545:43,0,54 chr1 159890469 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:29,22:0.423077:49,0,59 chr1 159927336 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:37:0,36:0.972973:46,45,0 chr1 159927342 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:41:18,23:0.560976:52,0,53 chr1 159927537 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:33:18,15:0.454545:43,0,51 chr1 159927848 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:94:50,43:0.457447:51,0,49 chr1 159927891 . TAA T 34.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:18:37:0,17:0.459459:34,20,36 chr1 159927891 . TA T 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:37:0,8:0.216216:34,20,46 chr1 159928310 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:68:34,34:0.5:46,0,53 chr1 159929123 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:58:0,58:1:48,34,0 chr1 159934749 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:151:91,60:0.397351:46,0,56 chr1 159936366 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:78:34,44:0.564103:52,0,56 chr1 159952579 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:0,24:1:57,40,0 chr1 159953321 . T G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:35:0,35:1:53,38,0 chr1 160030590 . T C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:51:26,25:0.490196:49,0,61 chr1 160031734 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:78:43,35:0.448718:41,0,50 chr1 160087450 . G T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:10,11:0.52381:47,0,54 chr1 160087732 . C T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:76:40,33:0.434211:46,0,52 chr1 160120884 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:44:0,44:1:49,35,0 chr1 160120891 . CCCTT C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:51:0,51:1:56,50,0 chr1 160123432 . C T 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:203:1,202:0.995074:59,48,0 chr1 160129137 . A AG 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:24:0,24:1:54,45,0 chr1 160136741 . G A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:37:17,20:0.540541:43,0,49 chr1 160155085 . G A 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:110:70,40:0.363636:42,0,49 chr1 160164415 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:72:34,38:0.527778:47,0,44 chr1 160166560 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:89:52,37:0.41573:43,0,55 chr1 160171208 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:12:5,7:0.583333:44,0,44 chr1 160171406 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:46:0,46:1:46,41,0 chr1 160177712 . T G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:32:17,15:0.46875:47,0,61 chr1 160181660 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:50:25,25:0.5:53,0,53 chr1 160193719 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:33:17,16:0.484848:54,0,63 chr1 160193801 . A T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:104:60,44:0.423077:46,0,60 chr1 160208566 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:50:0,50:1:55,40,0 chr1 160282002 . A G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:83:52,31:0.373494:45,0,51 chr1 160295725 . T C 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:29:17,12:0.413793:45,0,54 chr1 160299037 . A G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:15,23:0.605263:53,0,53 chr1 160305644 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:63:19,44:0.698413:52,0,42 chr1 160333626 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:21,15:0.416667:48,0,54 chr1 160339874 . T G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:15:8,7:0.466667:48,0,60 chr1 160349150 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:13,25:0.657895:53,0,50 chr1 160400566 . G C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:28:0,27:0.964286:48,35,0 chr1 160424115 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:80:34,46:0.575:49,0,46 chr1 160550022 . C CA 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:26,14:0.35:49,0,67 chr1 160550025 . C CT 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:39:26,13:0.333333:46,0,61 chr1 160612458 . C G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:22,17:0.425:49,0,54 chr1 160681123 . A G 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:93:59,34:0.365591:41,0,55 chr1 160684996 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:75:44,31:0.413333:44,0,49 chr1 160711741 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:103:53,50:0.485437:45,0,50 chr1 160752274 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:29:0,29:1:48,30,0 chr1 160797270 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:51:0,51:1:55,43,0 chr1 160816880 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:39:0,39:1:55,45,0 chr1 160819406 . A C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:29:0,29:1:46,30,0 chr1 160823652 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:68:0,68:1:55,39,0 chr1 160823770 . A G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:56:0,56:1:58,49,0 chr1 160824172 . G C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:60:0,60:1:55,51,0 chr1 160827724 . C G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:19:0,19:1:51,33,0 chr1 160951023 . A G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:73:32,40:0.547945:53,0,53 chr1 160999795 . C T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:30,27:0.473684:46,0,48 chr1 161001356 . A G 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:59:38,21:0.355932:39,0,50 chr1 161021085 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:94:58,36:0.382979:56,0,65 chr1 161021086 . C A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:93:58,35:0.376344:57,0,66 chr1 161021088 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:93:58,35:0.376344:54,0,65 chr1 161052590 . G A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:52:29,23:0.442308:44,0,54 chr1 161079568 . G A 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:78:46,32:0.410256:42,0,54 chr1 161118793 . T G 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:79:52,27:0.341772:36,0,52 chr1 161119660 . C CTAAACT 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:20:12,6:0.3:46,0,65 chr1 161122971 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:41:19,22:0.536585:55,0,55 chr1 161124400 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:88:50,37:0.420455:54,0,59 chr1 161156915 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:24:12,12:0.5:53,0,61 chr1 161166434 . C A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:95:45,50:0.526316:53,0,56 chr1 161167053 . C G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:148:73,75:0.506757:48,0,54 chr1 161169948 . G A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:129:76,53:0.410853:45,0,50 chr1 161174011 . G A 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:105:69,36:0.342857:42,0,50 chr1 161175215 . C T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:22,20:0.47619:44,0,56 chr1 161191494 . G C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:69:41,28:0.405797:45,0,53 chr1 161193247 . T C 64.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:87:0,87:1:64,42,0 chr1 161193843 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:40:0,40:1:57,41,0 chr1 161198214 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:83:42,41:0.493976:54,0,48 chr1 161202443 . C A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:116:54,62:0.534483:50,0,41 chr1 161210087 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:34,37:0.521127:51,0,58 chr1 161223055 . CCACACA C 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:100:11,84:0.84:30,0,33 chr1 161314434 . A AGT 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:91:40,51:0.56044:47,0,49 chr1 161323695 . T TTA 11.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:66:46,17:0.257576:11,0,49 chr1 161323702 . A T 21.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:55:29,13:0.236364:21,0,60 chr1 161323718 . C T 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:55:38,17:0.309091:30,0,61 chr1 161362301 . CT C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:45:16,19:0.422222:46,0,50 chr1 161362556 . C G 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:19:9,10:0.526316:40,0,34 chr1 161364945 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:35:20,15:0.428571:50,0,53 chr1 161365491 . T A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:20:11,9:0.45:50,0,60 chr1 161366165 . A C 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:71:46,25:0.352113:43,0,53 chr1 161367814 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:63:31,32:0.507937:50,0,54 chr1 161505583 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:71:39,32:0.450704:50,0,48 chr1 161505960 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:67:44,23:0.343284:44,0,52 chr1 161506414 . C T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:83:39,44:0.53012:53,0,51 chr1 161506415 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:83:0,83:1:48,44,0 chr1 161509809 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:17:0,17:1:53,34,0 chr1 161510859 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:43:23,20:0.465116:52,0,61 chr1 161525687 . A T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:59:30,29:0.491525:47,0,45 chr1 161526095 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:87:0,87:1:49,39,0 chr1 161544752 . A C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:68:0,68:1:45,40,0 chr1 161544969 . C CAG 28.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:43:39,3:0.0697674:28,0,35 chr1 161548543 . A T 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:158:107,51:0.322785:34,0,50 chr1 161548967 . T C 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:61:13,47:0.770492:34,0,23 chr1 161591444 . G C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:8:0,8:1:50,26,0 chr1 161599629 . C G 31.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:40:0,40:1:31,44,0 chr1 161629903 . T C 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:44:15,29:0.659091:31,0,0 chr1 161631042 . G T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:62:27,35:0.564516:41,0,34 chr1 161631205 . C T 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:27:15,12:0.444444:42,0,55 chr1 161673254 . A G 13.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:34:28,5:0.147059:12,0,31 chr1 161673479 . C T 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:128:94,34:0.265625:7,0,31 chr1 161675220 . C A 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:42:20,22:0.52381:38,0,51 chr1 161675469 . T G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:61:0,61:1:56,43,0 chr1 161707180 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:11:0,11:1:47,28,0 chr1 161710468 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:73:45,28:0.383562:47,0,59 chr1 161711963 . G C 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:64:49,15:0.234375:37,0,53 chr1 161711990 . A G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:79:52,27:0.341772:46,0,57 chr1 161713346 . G A 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:55:40,15:0.272727:39,0,54 chr1 161725849 . G T 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:46:0,46:1:60,49,0 chr1 161726992 . G C 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:49:16,33:0.673469:56,0,45 chr1 161727208 . C G 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:33:11,22:0.666667:57,0,56 chr1 161727282 . G C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:83:46,36:0.433735:48,0,59 chr1 161751917 . C T 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:40:32,8:0.2:31,0,49 chr1 161752482 . C A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:21:11,10:0.47619:42,0,49 chr1 161853221 . T A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:27:13,14:0.518519:52,0,61 chr1 161871082 . G C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:18,18:0.5:48,0,52 chr1 161912399 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:23:14,9:0.391304:47,0,57 chr1 161958537 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:136:64,72:0.529412:53,0,50 chr1 161997891 . A G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:72:0,72:1:57,48,0 chr1 162006444 . A G 31.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:58:39,19:0.327586:31,0,30 chr1 162006482 . G GA 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:25:4,18:0.72:36,20,0 chr1 162343807 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:39:20,19:0.487179:52,0,51 chr1 162374312 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:37,34:0.478873:51,0,57 chr1 162374600 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:78:0,78:1:55,49,0 chr1 162374884 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:55:21,34:0.618182:55,0,47 chr1 162375301 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:96:0,95:0.989583:57,43,0 chr1 162376643 . CA C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:24,31:0.563636:46,0,48 chr1 162378872 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:21:0,21:1:47,31,0 chr1 162383151 . G A 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:20:12,8:0.4:40,0,54 chr1 162412043 . C G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:16,18:0.529412:52,0,58 chr1 162497224 . C G 25.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:25:20,5:0.2:25,0,47 chr1 162655230 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:62:0,62:1:54,46,0 chr1 162753056 . C G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:51,38,0 chr1 162770537 . T C 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:158:0,158:1:62,50,0 chr1 162773628 . G T 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:74:0,74:1:58,50,0 chr1 162790761 . C T 39.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:49:0,48:0.979592:39,51,0 chr1 162790764 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:45:1,44:0.977778:50,47,0 chr1 162796686 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:52,39,0 chr1 163152738 . G C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:18:7,11:0.611111:48,0,49 chr1 163339429 . A T 22.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:48:38,10:0.208333:22,0,39 chr1 163339512 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:17:0,17:1:51,35,0 chr1 164820207 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:46:0,46:1:56,35,0 chr1 165203979 . A G 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:96:0,96:1:62,46,0 chr1 165249555 . G A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:69:42,27:0.391304:43,0,55 chr1 165353036 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:26:13,13:0.5:49,0,62 chr1 165406806 . T C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:88:47,41:0.465909:51,0,57 chr1 165408315 . G A 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:79:0,79:1:58,52,0 chr1 165419892 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:111:60,51:0.459459:51,0,57 chr1 165563768 . C A 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:96:42,53:0.552083:56,0,50 chr1 165632229 . G A 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:90:59,31:0.344444:33,0,53 chr1 165768467 . C G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:63:35,28:0.444444:53,0,60 chr1 165890393 . C G 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:37:0,37:1:47,38,0 chr1 165890403 . G GTGT 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:27:11,16:0.592593:46,0,52 chr1 166849329 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:49:21,28:0.571429:55,0,62 chr1 166857536 . C T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:39:15,23:0.589744:56,0,57 chr1 166862167 . A C 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:28:15,13:0.464286:38,0,50 chr1 166863962 . C A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:16:8,8:0.5:48,0,52 chr1 166993997 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:24:8,16:0.666667:51,0,52 chr1 167063559 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:31:11,20:0.645161:49,0,44 chr1 167073353 . C T 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:26:16,10:0.384615:42,0,52 chr1 167088316 . G A 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:73:50,23:0.315068:27,0,48 chr1 167088364 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:64:48,16:0.25:43,0,61 chr1 167088383 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:52,16:0.235294:47,0,57 chr1 167088389 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:64:49,15:0.234375:54,0,63 chr1 167088399 . G A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:66:49,17:0.257576:42,0,57 chr1 167088488 . G A 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:89:70,18:0.202247:30,0,52 chr1 167088529 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:93:65,28:0.301075:46,0,61 chr1 167090225 . G C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:111:59,52:0.468468:56,0,47 chr1 167090843 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:92:54,38:0.413043:47,0,53 chr1 167119236 . C A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:33:16,17:0.515152:50,0,51 chr1 167125926 . G C 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:78:0,77:0.987179:62,49,0 chr1 167126528 . G A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:103:50,53:0.514563:44,0,47 chr1 167126644 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:128:66,62:0.484375:46,0,48 chr1 167128330 . G A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:65:34,31:0.476923:46,0,56 chr1 167128502 . C A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:78:0,77:0.987179:60,43,0 chr1 167397956 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:22:10,12:0.545455:52,0,54 chr1 167413137 . A C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:81:42,39:0.481481:50,0,52 chr1 167413162 . AGTGT A 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:56:29,24:0.428571:31,0,40 chr1 167425045 . T TTAC 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:16:7,9:0.5625:45,0,53 chr1 167425254 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:41:0,41:1:53,42,0 chr1 167425773 . T G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:29,28:0.491228:48,0,51 chr1 167430631 . T TAG 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:31:0,23:0.741935:52,51,0 chr1 167430725 . T C 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:52:0,52:1:62,48,0 chr1 167434841 . G A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:79:0,79:1:60,47,0 chr1 167434942 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:129:73,56:0.434109:47,0,52 chr1 167439433 . C T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:101:63,38:0.376238:44,0,51 chr1 167824432 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:22:12,10:0.454545:41,0,59 chr1 167848401 . A G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:62:43,19:0.306452:40,0,50 chr1 167856247 . T C 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:61:36,25:0.409836:42,0,54 chr1 167856480 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:33:16,17:0.515152:51,0,53 chr1 167902059 . GA G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:70:8,59:0.842857:45,40,0 chr1 167935786 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:55:29,26:0.472727:51,0,58 chr1 167975058 . A G 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:10:7,3:0.3:37,0,50 chr1 168004738 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:134:77,57:0.425373:47,0,47 chr1 168090628 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:67:39,28:0.41791:46,0,56 chr1 168104907 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:33:17,16:0.484848:52,0,62 chr1 168136861 . A G 22.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:53:38,14:0.264151:22,0,50 chr1 168183852 . A T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:19:9,10:0.526316:49,0,63 chr1 168196529 . CT C 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:44:15,21:0.477273:13,0,44 chr1 168231495 . T C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:72:32,40:0.555556:44,0,46 chr1 168293284 . A AGT 9.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:97:50,37:0.381443:9,0,14 chr1 168543871 . A G 19.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:45:36,9:0.2:19,0,59 chr1 168543976 . C T 23.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:71:58,13:0.183099:23,0,23 chr1 168543990 . G A 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:47:38,9:0.191489:34,0,46 chr1 168576626 . A G 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:100:70,30:0.3:34,0,47 chr1 168576711 . G A 16.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:93:46,47:0.505376:16,19,0 chr1 168580184 . C T 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:39:23,16:0.410256:37,0,47 chr1 168696509 . C CT 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:35:20,15:0.428571:39,0,54 chr1 168728935 . C T 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:100:0,100:1:62,52,0 chr1 169124862 . T A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:14,8:0.363636:43,0,63 chr1 169303213 . A T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:18:0,18:1:53,40,0 chr1 169303215 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:16:0,16:1:50,35,0 chr1 169309958 . T TA 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:48:29,18:0.375:40,0,53 chr1 169324483 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:70:41,29:0.414286:50,0,54 chr1 169421916 . A G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:0,31:1:58,43,0 chr1 169465789 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:19:0,19:1:51,37,0 chr1 169485770 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:72:38,33:0.458333:51,0,55 chr1 169524958 . C T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:40:26,14:0.35:42,0,50 chr1 169529596 . T C 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:38:0,38:1:60,47,0 chr1 169529737 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:27,35:0.564516:48,0,50 chr1 169540693 . G T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:25:10,15:0.6:50,0,57 chr1 169541142 . G A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:113:69,43:0.380531:48,0,61 chr1 169541237 . G T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:124:43,81:0.653226:45,0,39 chr1 169541286 . A G 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:161:98,62:0.385093:35,0,66 chr1 169542317 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:78:35,43:0.551282:50,0,46 chr1 169542496 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:89:54,35:0.393258:53,0,61 chr1 169542517 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:71:44,27:0.380282:51,0,57 chr1 169542789 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:49:33,16:0.326531:45,0,55 chr1 169542855 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:56:38,18:0.321429:53,0,62 chr1 169542882 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:54:34,20:0.37037:50,0,65 chr1 169546636 . T A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:22:12,10:0.454545:44,0,44 chr1 169552315 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:18:0,18:1:48,27,0 chr1 169552611 . T C 26.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:52:41,11:0.211538:26,0,43 chr1 169582444 . T C 33.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:4:0,4:1:31,1,0 chr1 169591489 . T TA 25 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:16:1,9:0.5625:24,18,0 chr1 169594713 . T G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:44:0,44:1:50,34,0 chr1 169597075 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:48:0,48:1:57,42,0 chr1 169611479 . T C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:24:15,9:0.375:47,0,62 chr1 169704697 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:51:26,25:0.490196:50,0,45 chr1 169708568 . A G 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:115:67,47:0.408696:42,0,49 chr1 169725777 . A G 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:57:39,18:0.315789:41,0,52 chr1 169725969 . T A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:23:12,11:0.478261:51,0,62 chr1 169726843 . G A 60.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:31:13,18:0.580645:60,0,60 chr1 169727805 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:37,18:0.327273:49,0,49 chr1 169729684 . T G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:47:23,24:0.510638:47,0,56 chr1 169733564 . G A 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:59:43,16:0.271186:30,0,53 chr1 169804176 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:46:29,17:0.369565:44,0,54 chr1 169843624 . ATTC A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:17,15:0.46875:53,0,66 chr1 169850464 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:73:31,42:0.575342:52,0,57 chr1 169854577 . T C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:75:48,27:0.36:45,0,50 chr1 169921792 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:45:0,45:1:55,45,0 chr1 169923143 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:23:0,23:1:51,36,0 chr1 169972620 . A T 35 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:4:0,4:1:34,15,0 chr1 169982856 . C T 18.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:23:17,6:0.26087:18,0,43 chr1 169983244 . G T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:15:0,15:1:54,37,0 chr1 170035581 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:26:11,15:0.576923:54,0,63 chr1 170166467 . C T 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:36:25,11:0.305556:33,0,52 chr1 170532244 . A C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:81:0,81:1:56,46,0 chr1 170539614 . G GT 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:8:4,4:0.5:43,0,54 chr1 170542463 . T C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:29:13,16:0.551724:56,0,55 chr1 170552235 . G A 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:58:0,58:1:61,45,0 chr1 171107825 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:54:26,28:0.518519:45,0,55 chr1 171108057 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:32:16,16:0.5:51,0,59 chr1 171108231 . C G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:18,19:0.513514:46,0,55 chr1 171199406 . T C 5.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:91:80,11:0.120879:3,0,32 chr1 171199446 . A G 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:83:73,10:0.120482:2,0,35 chr1 171208951 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:69:0,69:1:55,45,0 chr1 171209013 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:78:43,35:0.448718:48,0,50 chr1 171314339 . A T 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:30:21,9:0.3:37,0,55 chr1 171332955 . A C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:15:6,9:0.6:45,0,50 chr1 171334786 . C T 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:14:8,6:0.428571:28,0,52 chr1 171341864 . A C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:75:49,26:0.346667:41,0,42 chr1 171636585 . C A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:109:64,45:0.412844:43,0,44 chr1 171841820 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:53:0,53:1:47,41,0 chr1 171987663 . C T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:47:31,15:0.319149:50,0,56 chr1 172032526 . CTTTTTTTT C 7.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:14:11,3:0.214286:6,0,13 chr1 172387297 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:46:0,44:0.956522:53,35,0 chr1 172441827 . G A 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:92:55,37:0.402174:42,0,57 chr1 172442356 . A G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:69:0,69:1:57,39,0 chr1 172442628 . T C 23.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:116:81,35:0.301724:23,0,45 chr1 172453069 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:120:68,51:0.425:45,0,60 chr1 172456389 . C G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:32,38:0.535211:53,0,55 chr1 172468452 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:25:0,25:1:52,36,0 chr1 172664323 . C G 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:38:24,14:0.368421:31,0,57 chr1 172665594 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:81:0,81:1:53,44,0 chr1 173208253 . C G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:16:9,7:0.4375:49,0,59 chr1 173828313 . T TC 21.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:34:21,8:0.235294:21,0,55 chr1 173850283 . C CA 7.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:22:8,13:0.590909:6,0,39 chr1 173886070 . A G 31.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:62:45,17:0.274194:31,0,56 chr1 174219147 . G A 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:8,9:0.5:44,0,55 chr1 174448093 . G A 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:55:0,55:1:57,40,0 chr1 174547861 . C T 31.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:29:23,6:0.206897:31,0,52 chr1 174976034 . CTGTATGACTGTGA C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:10,24:0.705882:47,0,54 chr1 175000135 . C T 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:51:0,50:0.980392:52,38,0 chr1 175077352 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:29:0,28:0.965517:53,43,0 chr1 175077653 . A G 64.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:89:0,89:1:64,50,0 chr1 175079598 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:98:60,38:0.387755:44,0,56 chr1 175083962 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:34:14,20:0.588235:57,0,59 chr1 175083965 . A T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:34:0,34:1:52,51,0 chr1 175085412 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:86:0,86:1:56,49,0 chr1 175118541 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:33:16,17:0.515152:50,0,64 chr1 175118547 . A AT 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:13,17:0.485714:44,0,54 chr1 175118593 . T C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:68:32,35:0.514706:55,0,65 chr1 175118748 . C T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:100:53,47:0.47:57,0,66 chr1 175118749 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:100:53,46:0.46:58,0,67 chr1 175123538 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:84:0,84:1:51,43,0 chr1 175123571 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:85:49,36:0.423529:52,0,58 chr1 175123704 . T C 44.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:15:0,15:1:44,28,0 chr1 175128195 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:12,19:0.612903:52,0,56 chr1 175128213 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:23:0,23:1:56,46,0 chr1 175136806 . G A 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:0,24:1:59,39,0 chr1 175144442 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:56:0,56:1:56,38,0 chr1 175147116 . C G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:48:0,48:1:56,44,0 chr1 175160555 . G T 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:72:47,25:0.347222:34,0,49 chr1 175160809 . TC T 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:85:49,36:0.423529:36,0,42 chr1 175160810 . C T 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:49:0,49:1:38,0,32 chr1 175160811 . TTCTTCTTG T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:87:50,36:0.413793:45,0,55 chr1 175330165 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:86:0,86:1:55,37,0 chr1 175355515 . A G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:34:0,34:1:51,30,0 chr1 175379587 . C T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:53:0,53:1:54,41,0 chr1 175385992 . C G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:20:0,20:1:57,42,0 chr1 175386255 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:60:0,60:1:59,46,0 chr1 175396527 . G A 67.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:57:135:0,135:1:67,57,0 chr1 175406198 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:45:0,45:1:53,41,0 chr1 175406333 . C A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:141:0,141:1:53,40,0 chr1 175406547 . T C 61.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:110:0,110:1:61,44,0 chr1 175406666 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:66:0,66:1:57,40,0 chr1 175743629 . GTCTCTCTC G 14.1 PASS . GT:GQ:DP:AD:VAF:PL 0/0:4:31:22,4:0.129032:11,2,29 chr1 175743629 . GTCTCTC G 14.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:31:22,2:0.0645161:11,0,23 chr1 176043671 . G A 31.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:2:0,2:1:30,6,0 chr1 176888211 . A G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:60:31,29:0.483333:46,0,54 chr1 176894700 . G C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:92:49,43:0.467391:59,0,67 chr1 176894731 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:124:64,60:0.483871:53,0,64 chr1 176945886 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:19:9,10:0.526316:54,0,57 chr1 176949368 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:17,12:0.413793:48,0,54 chr1 176965253 . T A 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:46:24,22:0.478261:41,0,57 chr1 177023417 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:93:50,43:0.462366:56,0,59 chr1 177030781 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:23,17:0.425:46,0,56 chr1 177032760 . C G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:97:49,46:0.474227:49,0,55 chr1 177229862 . T C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:9,9:0.5:44,0,58 chr1 177281534 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:46:20,26:0.565217:51,0,51 chr1 177932578 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:48:1,47:0.979167:53,30,0 chr1 177932606 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:43:0,43:1:57,44,0 chr1 177933618 . G C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:57:0,57:1:56,40,0 chr1 177946339 . A C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:37:0,37:1:48,34,0 chr1 177960419 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:43:0,43:1:49,40,0 chr1 177960852 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:70:0,70:1:58,48,0 chr1 177961759 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:30:0,30:1:56,36,0 chr1 177964308 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:48:0,48:1:55,38,0 chr1 177965216 . G T 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:13:0,13:1:48,31,0 chr1 177965915 . T A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:0,17:1:48,35,0 chr1 178233672 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:195:116,79:0.405128:46,0,53 chr1 178233907 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:19:0,19:1:56,39,0 chr1 178494762 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:103:63,40:0.38835:44,0,52 chr1 178885027 . C T 39.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:8:0,8:1:39,22,0 chr1 178889624 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:22:15,7:0.318182:50,0,60 chr1 179043812 . C G 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:26:14,12:0.461538:51,0,61 chr1 179071876 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:22:0,22:1:53,44,0 chr1 179082165 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:26:0,26:1:56,42,0 chr1 179085885 . C T 33.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:64:43,21:0.328125:33,0,47 chr1 179097936 . C A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:25:0,25:1:50,36,0 chr1 179118799 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:26:0,26:1:57,43,0 chr1 179121915 . ATTTTT A 17 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:16:0,3:0.1875:13,0,14 chr1 179121915 . ATTTT A 17 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:16:0,5:0.3125:13,0,19 chr1 179337912 . T A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:6,8:0.571429:49,0,59 chr1 179341127 . C T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:84:51,33:0.392857:46,0,52 chr1 179342967 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:23:11,12:0.521739:53,0,58 chr1 179350445 . T C 25.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:84:53,31:0.369048:25,0,40 chr1 179365923 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:72:27,45:0.625:55,0,53 chr1 179366003 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:66:35,31:0.469697:57,0,66 chr1 179366023 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:32:21,11:0.34375:45,0,64 chr1 179366027 . G C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:31:20,11:0.354839:54,0,65 chr1 179378697 . T C 19.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:39:32,7:0.179487:19,0,45 chr1 179379511 . T TG 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:17:9,8:0.470588:40,0,48 chr1 179429591 . A G 17.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:14:10,4:0.285714:17,0,57 chr1 179432391 . C G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:22,20:0.47619:51,0,66 chr1 179444970 . A C 30.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:24:19,5:0.208333:30,0,49 chr1 179525477 . CTACA C 25.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:17:2,15:0.882353:25,0,25 chr1 179551371 . G A 66 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:124:0,124:1:65,51,0 chr1 179557079 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:100:54,46:0.46:48,0,52 chr1 179559782 . G A 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:59:25,19:0.322034:33,0,59 chr1 179559807 . G A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:56:39,14:0.25:40,0,59 chr1 179575763 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:85:0,85:1:57,42,0 chr1 179593605 . G C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:90:54,36:0.4:46,0,51 chr1 179635729 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:89:53,36:0.404494:58,0,59 chr1 179635923 . G A 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:6:4,2:0.333333:30,0,46 chr1 179662107 . G A 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:33:23,10:0.30303:39,0,56 chr1 179882939 . T C 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:90:0,90:1:60,45,0 chr1 179889309 . G A 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:31:0,31:1:58,45,0 chr1 179907853 . C G 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:45:0,44:0.977778:55,40,0 chr1 179907913 . C CT 16.4 PASS . GT:GQ:DP:AD:VAF:PL 1/0:5:26:7,4:0.153846:14,19,6 chr1 179907913 . C CTTT 16.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:26:7,6:0.230769:14,19,7 chr1 179917990 . G A 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:100:1,98:0.98:59,42,0 chr1 179992229 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:7,7:0.5:50,0,54 chr1 180014530 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:23:0,23:1:52,36,0 chr1 180020607 . G C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:38:0,37:0.973684:53,33,0 chr1 180044128 . A G 11.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:7:5,2:0.285714:11,0,49 chr1 180053208 . T G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:13:0,13:1:47,29,0 chr1 180090676 . A C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:30:0,30:1:56,41,0 chr1 180110980 . T G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:42:0,42:1:57,53,0 chr1 180175953 . A G 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:53:0,53:1:61,48,0 chr1 180196564 . A C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:82:39,43:0.52439:47,0,38 chr1 180248057 . C A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:26:18,8:0.307692:54,0,62 chr1 180248115 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:72:46,25:0.347222:47,0,62 chr1 180266272 . G A 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:163:102,61:0.374233:41,0,46 chr1 180272020 . G T 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:136:82,54:0.397059:41,0,62 chr1 180274389 . A G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:114:59,54:0.473684:44,0,55 chr1 180288557 . A C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:16:0,15:0.9375:53,32,0 chr1 180916294 . T C 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:56:0,56:1:59,45,0 chr1 180928385 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:13:0,13:1:56,54,0 chr1 180928433 . C T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:22,16:0.421053:46,0,46 chr1 180936127 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:109:63,46:0.422018:53,0,47 chr1 180936216 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:95:51,43:0.452632:43,0,55 chr1 180936312 . G T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:43,46:0.516854:48,0,52 chr1 180944461 . A G 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:54:0,54:1:58,44,0 chr1 180950890 . T C 28.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:71:50,21:0.295775:28,0,51 chr1 180984717 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:35:0,35:1:52,37,0 chr1 181034099 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:39:15,24:0.615385:46,0,47 chr1 181049100 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:79:0,79:1:54,48,0 chr1 181055268 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:51:0,51:1:55,41,0 chr1 181089507 . A G 32.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:5:0,5:1:31,10,0 chr1 181413610 . A G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:11:4,7:0.636364:43,0,40 chr1 181710946 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:56:30,26:0.464286:51,0,57 chr1 181717080 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:46:26,20:0.434783:52,0,60 chr1 181755974 . T C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:127:0,125:0.984252:58,44,0 chr1 181762531 . T TC 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:31:1,26:0.83871:42,40,0 chr1 181763559 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:76:0,74:0.973684:55,45,0 chr1 181772165 . C T 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:171:101,70:0.409357:42,0,51 chr1 181783633 . A AT 40.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:104:18,60:0.576923:40,24,0 chr1 181783787 . AAGCTT A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:68:0,68:1:55,45,0 chr1 182385715 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:41:19,22:0.536585:54,0,58 chr1 182385911 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:32:18,14:0.4375:46,0,64 chr1 182387264 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:143:76,67:0.468531:46,0,51 chr1 182399943 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:83:45,38:0.457831:50,0,54 chr1 182400098 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:67:30,36:0.537313:51,0,50 chr1 182460160 . CTG C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:53:2,45:0.849057:55,39,0 chr1 182473879 . G C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:92:53,39:0.423913:46,0,52 chr1 182474327 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:16,27:0.627907:52,0,49 chr1 182521972 . A C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:26:11,15:0.576923:53,0,59 chr1 182532798 . C A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:25:13,12:0.48:52,0,60 chr1 182576401 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:18,17:0.485714:47,0,46 chr1 182589263 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:64:0,64:1:56,44,0 chr1 182600491 . T C 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:110:0,110:1:61,53,0 chr1 182602142 . C T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:16,11:0.407407:44,0,59 chr1 182671716 . T G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:72:54,18:0.25:43,0,56 chr1 182671729 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:70:53,17:0.242857:45,0,47 chr1 182814887 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:24,18:0.428571:51,0,56 chr1 182881592 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:22:0,22:1:50,36,0 chr1 183131428 . G GGT 16.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:108:15,89:0.824074:15,0,7 chr1 183207835 . G GT 27 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:75:6,26:0.346667:25,5,0 chr1 183208083 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:100:56,44:0.44:49,0,49 chr1 183223169 . T G 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:98:60,38:0.387755:42,0,52 chr1 183237438 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:73:38,35:0.479452:52,0,53 chr1 183238468 . T C 27.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:53:36,17:0.320755:27,0,50 chr1 183243413 . T G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:32:18,14:0.4375:42,0,60 chr1 183517724 . G A 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:142:0,142:1:58,42,0 chr1 183533735 . T TACA 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:40:20,19:0.475:51,0,56 chr1 183555715 . A AGAT 35.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:46:26,19:0.413043:35,0,53 chr1 183555720 . C A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:43:0,43:1:52,51,0 chr1 183556317 . T G 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:67:0,67:1:60,48,0 chr1 183623459 . A G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:69:41,28:0.405797:47,0,53 chr1 183627568 . G A 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:32:23,9:0.28125:34,0,66 chr1 183630503 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:31:20,11:0.354839:45,0,66 chr1 183633173 . G T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:21,22:0.511628:47,0,55 chr1 183635502 . T A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:37:21,16:0.432432:57,0,70 chr1 183647646 . G T 15 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:6:4,2:0.333333:14,0,46 chr1 183647670 . T C 31.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:11:8,3:0.272727:31,0,57 chr1 183647749 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:36:23,13:0.361111:53,0,67 chr1 183647791 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:32:20,12:0.375:54,0,65 chr1 183647959 . G A 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:54:44,10:0.185185:35,0,55 chr1 183647970 . A G 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:51:40,11:0.215686:41,0,52 chr1 183648176 . T A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:81:47,33:0.407407:41,0,49 chr1 183648278 . T C 21.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:93:65,28:0.301075:21,0,44 chr1 183648558 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:17,18:0.514286:50,0,53 chr1 183883780 . G C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:65:0,65:1:53,37,0 chr1 183907048 . C T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:121:72,49:0.404959:44,0,55 chr1 183950978 . T C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:60:38,22:0.366667:41,0,53 chr1 184037243 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:55,29:0.345238:45,0,53 chr1 184694447 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:12,13:0.52:52,0,57 chr1 184694509 . TA T 29.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:6:3,3:0.5:29,0,51 chr1 184702775 . C A 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:14:9,5:0.357143:44,0,55 chr1 184708330 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:26,20:0.434783:47,0,57 chr1 184726437 . C T 22.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:7:5,2:0.285714:22,0,51 chr1 184737078 . GT G 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:11:7,4:0.363636:34,0,51 chr1 184749616 . GAAA G 9.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:16:5,6:0.375:9,0,43 chr1 184831931 . T C 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:57:48,9:0.157895:0,0,31 chr1 185174589 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:35:17,18:0.514286:52,0,63 chr1 185202737 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:54:32,22:0.407407:43,0,56 chr1 185271342 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:42:24,18:0.428571:47,0,60 chr1 185864433 . A C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:22:0,22:1:54,39,0 chr1 186057342 . T C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:74:0,73:0.986486:58,42,0 chr1 186061909 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:68:0,68:1:58,44,0 chr1 186081285 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:86:0,86:1:56,46,0 chr1 186086239 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:47:0,47:1:54,43,0 chr1 186088049 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:50:0,50:1:53,41,0 chr1 186088215 . A T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:135:85,50:0.37037:44,0,57 chr1 186112786 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:51:0,51:1:58,43,0 chr1 186117446 . G A 64.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:66:0,66:1:64,50,0 chr1 186119980 . T C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:18:12,6:0.333333:43,0,61 chr1 186122944 . A C 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:81:55,26:0.320988:41,0,43 chr1 186132407 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:63:43,20:0.31746:47,0,50 chr1 186144720 . G C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:36:18,18:0.5:46,0,49 chr1 186166899 . T C 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:139:85,54:0.388489:45,0,50 chr1 186172169 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:20:0,20:1:54,43,0 chr1 186188052 . T G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:32:11,21:0.65625:55,0,52 chr1 186307174 . T C 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:168:93,73:0.434524:35,0,43 chr1 186308436 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:154:80,74:0.480519:51,0,57 chr1 186308876 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:175:99,76:0.434286:45,0,53 chr1 186320429 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:26:12,14:0.538462:47,0,58 chr1 186325856 . TA T 31.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:46:31,15:0.326087:31,0,45 chr1 186344117 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:23:0,23:1:55,37,0 chr1 186360737 . C G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:8,10:0.555556:50,0,55 chr1 186870747 . AAG A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:13,12:0.48:48,0,52 chr1 186894253 . TAA T 33.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:14:8,6:0.428571:33,0,44 chr1 186939253 . C T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:8:3,5:0.625:44,0,44 chr1 186956062 . T C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:41:0,41:1:49,45,0 chr1 186977780 . G A 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:80:0,80:1:61,48,0 chr1 190154065 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:14:0,14:1:48,31,0 chr1 192575969 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:39:20,19:0.487179:56,0,66 chr1 192579099 . G T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:13,9:0.409091:45,0,57 chr1 192810958 . GCT G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:10,15:0.6:50,0,52 chr1 193082555 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:51:26,25:0.490196:53,0,55 chr1 193101127 . C G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:27,15:0.357143:45,0,56 chr1 193105241 . A G 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:29:19,10:0.344828:37,0,48 chr1 193105521 . T A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:46:23,23:0.5:47,0,48 chr1 193125245 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:24:12,12:0.5:49,0,57 chr1 196258396 . A G 64.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:141:0,141:1:64,49,0 chr1 196282392 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:30:0,30:1:52,39,0 chr1 196492383 . C T 40.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:6:0,6:1:40,17,0 chr1 196672942 . C T 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:24:15,9:0.375:40,0,62 chr1 196673103 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:48:23,25:0.520833:44,0,49 chr1 196685194 . A C 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:96:69,26:0.270833:45,0,51 chr1 196690107 . C T 26.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:41:31,10:0.243902:26,0,51 chr1 196692375 . G C 21.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:12:9,3:0.25:21,0,47 chr1 196713817 . G A 17.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:68:54,14:0.205882:17,0,43 chr1 196790217 . A C 34.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:12:0,12:1:34,29,0 chr1 196905226 . G T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:19:0,19:1:49,33,0 chr1 196907328 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:53:32,21:0.396226:53,0,53 chr1 196977645 . T C 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:90:62,28:0.311111:37,0,45 chr1 197040668 . A G 20.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:38:30,8:0.210526:20,0,42 chr1 197061071 . T C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:13:8,5:0.384615:43,0,49 chr1 197061107 . CT C 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:10:7,3:0.3:38,0,55 chr1 197061891 . C T 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:47,30:0.38961:43,0,57 chr1 197084463 . GTTC G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:31,28:0.474576:47,0,56 chr1 197086795 . T C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:14,9:0.391304:48,0,65 chr1 197101685 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:51:30,21:0.411765:47,0,49 chr1 197101771 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:52:0,52:1:51,34,0 chr1 197122407 . A T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:62:25,37:0.596774:48,0,45 chr1 197124900 . C T 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:25:18,7:0.28:43,0,55 chr1 197139912 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:13,11:0.44:51,0,63 chr1 197143403 . G A 26.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:51:39,12:0.235294:26,0,48 chr1 197143943 . G A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:29:15,14:0.482759:60,0,61 chr1 197172113 . A C 20.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:10:6,4:0.4:20,0,43 chr1 197172121 . C A 32.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:11:6,5:0.454545:32,0,49 chr1 197347305 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:41:23,18:0.439024:52,0,65 chr1 197421238 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:115:0,115:1:56,45,0 chr1 197428956 . A G 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:24:15,9:0.375:41,0,53 chr1 197607177 . A AT 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:39:0,38:0.974359:57,52,0 chr1 197772821 . C A 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:31:0,31:1:62,54,0 chr1 197902871 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:39:18,21:0.538462:50,0,49 chr1 197902889 . G T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:15,15:0.5:51,0,49 chr1 197921292 . C G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:55:0,55:1:53,42,0 chr1 198264272 . GT G 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:7:3,4:0.571429:33,0,31 chr1 198529195 . AATATAT A 25.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:33:9,24:0.727273:25,0,51 chr1 198699729 . C T 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:132:86,46:0.348485:36,0,52 chr1 200045634 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:9:0,9:1:48,25,0 chr1 200048458 . C G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:98:0,98:1:56,35,0 chr1 200173936 . CTTTT C 23 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:21:0,13:0.619048:21,0,32 chr1 200173936 . CTTT C 23 PASS . GT:GQ:DP:AD:VAF:PL 0/0:5:21:0,3:0.142857:21,5,27 chr1 200553438 . G C 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:133:78,55:0.413534:42,0,49 chr1 200559439 . T A 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:43:22,21:0.488372:42,0,59 chr1 200565120 . C T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:51:35,16:0.313726:39,0,56 chr1 200586075 . G T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:21:10,11:0.52381:47,0,56 chr1 200589235 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:50:0,50:1:58,39,0 chr1 200598468 . T G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:34:20,14:0.411765:45,0,52 chr1 200605831 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:13:4,9:0.692308:49,0,37 chr1 200608965 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:18:0,18:1:56,35,0 chr1 200620685 . C A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:78:35,43:0.551282:52,0,53 chr1 200649110 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:52:0,52:1:51,36,0 chr1 200650402 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:27:0,27:1:52,46,0 chr1 200669719 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:17:7,10:0.588235:52,0,51 chr1 200669862 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:79:39,40:0.506329:45,0,49 chr1 200669912 . CGGAGCGTAGA C 17.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:23:15,7:0.304348:17,0,44 chr1 200669914 . G T 15.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:15:11,4:0.266667:15,0,49 chr1 200669917 . C A 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:15:11,4:0.266667:5,0,52 chr1 200857267 . A T 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:11:5,6:0.545455:40,0,59 chr1 200898364 . C G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:75:0,74:0.986667:55,41,0 chr1 200911850 . C T 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:37:0,37:1:43,30,0 chr1 200912044 . C A 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:52:26,26:0.5:38,0,42 chr1 200913666 . G A 30 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:49:25,22:0.44898:30,0,46 chr1 200974665 . CAGGA C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:28:0,28:1:48,48,0 chr1 200975712 . T G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:20:9,11:0.55:53,0,61 chr1 200987160 . A G 15.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:85:63,22:0.258824:15,0,40 chr1 200988563 . G C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:45:24,21:0.466667:52,0,56 chr1 200988569 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:40:20,20:0.5:47,0,65 chr1 200989924 . T G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:19:10,9:0.473684:47,0,51 chr1 200990174 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:30,45:0.6:51,0,51 chr1 200991179 . G A 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:18:10,8:0.444444:36,0,58 chr1 200991758 . C T 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:43:22,21:0.488372:55,0,65 chr1 200991770 . A T 65.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:32:17,15:0.46875:65,0,66 chr1 200998362 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:51:0,51:1:55,45,0 chr1 200998559 . C G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:95:47,48:0.505263:48,0,50 chr1 201000638 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:41:21,20:0.487805:54,0,60 chr1 201000793 . G A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:68:31,37:0.544118:45,0,44 chr1 201000814 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:48:21,27:0.5625:59,0,70 chr1 201002393 . G A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:26:15,11:0.423077:58,0,65 chr1 201002400 . G T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:24:15,9:0.375:54,0,59 chr1 201009284 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:20,19:0.487179:48,0,55 chr1 201040054 . A G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:49:30,19:0.387755:44,0,52 chr1 201043356 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:84:43,41:0.488095:48,0,55 chr1 201050977 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:115:67,48:0.417391:48,0,57 chr1 201059338 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:24:13,11:0.458333:44,0,59 chr1 201069559 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:143:1,142:0.993007:59,46,0 chr1 201069614 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:109:64,45:0.412844:46,0,57 chr1 201075620 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:63:0,63:1:56,43,0 chr1 201076897 . G T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:41:20,21:0.512195:51,0,57 chr1 201077934 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:52:0,52:1:54,39,0 chr1 201077947 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:50:0,50:1:55,48,0 chr1 201112155 . AC A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:63:23,34:0.539683:44,0,50 chr1 201114758 . C G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:28,20:0.416667:46,0,57 chr1 201143853 . A G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:107:64,43:0.401869:45,0,48 chr1 201143990 . A G 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:20:13,7:0.35:42,0,64 chr1 201146694 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:17,13:0.433333:51,0,65 chr1 201146890 . C G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:32:18,14:0.4375:47,0,52 chr1 201153819 . T G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:85:46,39:0.458824:50,0,51 chr1 201193283 . G A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:74:45,28:0.378378:49,0,58 chr1 201197255 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:74:47,27:0.364865:49,0,57 chr1 201197307 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:52:0,52:1:53,47,0 chr1 201201696 . C G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:38:0,38:1:54,46,0 chr1 201201879 . T G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:34:22,12:0.352941:41,0,52 chr1 201206098 . ACCTTC A 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:35:17,18:0.514286:36,0,68 chr1 201206146 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:64:29,35:0.546875:54,0,63 chr1 201206587 . G T 15.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:150:112,38:0.253333:14,0,43 chr1 201206890 . A G 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:69:48,21:0.304348:37,0,50 chr1 201206980 . G A 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:58:44,14:0.241379:34,0,55 chr1 201207174 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:76:39,36:0.473684:51,0,54 chr1 201207840 . A G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:96:52,44:0.458333:46,0,53 chr1 201208118 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:78:46,32:0.410256:51,0,63 chr1 201208150 . C T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:109:65,44:0.40367:54,0,61 chr1 201208410 . G T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:103:57,46:0.446602:52,0,59 chr1 201209342 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:35,27:0.435484:48,0,54 chr1 201209660 . A G 7.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:73:36,35:0.479452:6,0,43 chr1 201209691 . G A 8.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:50:43,7:0.14:7,0,55 chr1 201209837 . A G 22.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:59:29,30:0.508475:22,0,54 chr1 201209922 . A G 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:78:58,18:0.230769:7,0,49 chr1 201209940 . G A 12.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:75:64,11:0.146667:12,0,42 chr1 201210471 . G C 25.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:2:0,2:1:24,8,0 chr1 201210956 . G T 20.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:46:23,23:0.5:19,0,7 chr1 201210972 . C T 5.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:36:15,16:0.444444:3,0,7 chr1 201211212 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:16,15:0.483871:54,0,54 chr1 201211373 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:32:18,14:0.4375:47,0,62 chr1 201212089 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:60:33,27:0.45:56,0,59 chr1 201212095 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:58:0,58:1:53,46,0 chr1 201212792 . G T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:73:38,35:0.479452:46,0,53 chr1 201213651 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:20,26:0.565217:51,0,54 chr1 201214969 . G A 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:20:12,8:0.4:41,0,54 chr1 201215147 . C T 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:78:38,40:0.512821:38,0,48 chr1 201215164 . A AGCCCT 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:54:11,36:0.666667:49,0,30 chr1 201218636 . T C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:112:2,110:0.982143:54,40,0 chr1 201218700 . T C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:46:0,46:1:55,42,0 chr1 201221604 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:96:54,42:0.4375:47,0,52 chr1 201225991 . C T 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:147:0,147:1:61,44,0 chr1 201228343 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:98:51,47:0.479592:48,0,50 chr1 201319770 . A C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:45:0,45:1:56,44,0 chr1 201321938 . C T 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,37:1:59,44,0 chr1 201322982 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:35:0,35:1:57,47,0 chr1 201324384 . TG T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:40:16,24:0.6:53,0,63 chr1 201325150 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:167:80,87:0.520958:56,0,56 chr1 201330135 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:22:0,22:1:58,41,0 chr1 201330263 . G C 65.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:23:10,13:0.565217:65,0,66 chr1 201330265 . T G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:23:0,22:0.956522:44,38,0 chr1 201330342 . A C 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:40:26,14:0.35:45,0,52 chr1 201330620 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:100:54,46:0.46:54,0,61 chr1 201330657 . A C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:76:43,33:0.434211:53,0,65 chr1 201330724 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:59:33,26:0.440678:48,0,72 chr1 201330772 . G A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:52,24:0.311688:42,0,62 chr1 201331714 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:81:0,81:1:58,56,0 chr1 201331730 . C A 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:87:0,87:1:62,53,0 chr1 201331983 . A C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:73:46,27:0.369863:45,0,53 chr1 201332568 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:29:0,29:1:55,52,0 chr1 201332583 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:22:11,11:0.5:54,0,64 chr1 201332609 . G GCCCCCACCCTGA 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:31:2,20:0.645161:46,36,0 chr1 201332745 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:72:0,72:1:53,35,0 chr1 201332778 . C G 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:76:0,76:1:60,48,0 chr1 201362426 . T G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:167:88,79:0.473054:40,0,49 chr1 201364313 . C G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:134:86,47:0.350746:44,0,57 chr1 201365254 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:124:73,51:0.41129:48,0,54 chr1 201367856 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:31,26:0.45614:45,0,54 chr1 201369768 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:47:22,25:0.531915:51,0,54 chr1 201372047 . CAGAAG C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:121:80,41:0.338843:53,0,65 chr1 201381855 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:47:26,21:0.446809:52,0,54 chr1 201386394 . T C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:69:42,27:0.391304:38,0,51 chr1 201386633 . A G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:78:47,31:0.397436:49,0,57 chr1 201389176 . C A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:79:43,36:0.455696:46,0,55 chr1 201406879 . G C 63.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:79:41,38:0.481013:63,0,69 chr1 201406893 . A T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:86:48,38:0.44186:57,0,60 chr1 201408310 . A G 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:97:0,96:0.989691:62,48,0 chr1 201408757 . G A 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:90:0,89:0.988889:61,49,0 chr1 201408763 . C A 59.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:88:38,50:0.568182:59,0,55 chr1 201408766 . A T 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:92:0,92:1:60,48,0 chr1 201414488 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:33:0,33:1:55,46,0 chr1 201414515 . A C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:49:0,49:1:56,47,0 chr1 201429100 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:80:0,80:1:60,45,0 chr1 201429127 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:79:46,33:0.417722:50,0,59 chr1 201485257 . C A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:56:34,22:0.392857:44,0,58 chr1 201507256 . C A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:79:34,45:0.56962:44,0,51 chr1 201785282 . CT C 26.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:62:7,23:0.370968:25,4,0 chr1 201803735 . T TG 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:92:0,91:0.98913:59,47,0 chr1 201868806 . CGT C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:38:0,36:0.947368:51,29,0 chr1 201871336 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:24:0,23:0.958333:45,42,0 chr1 201891498 . A G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:82:0,82:1:60,46,0 chr1 201891888 . C G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:60:0,60:1:52,34,0 chr1 201957275 . T G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:88:41,47:0.534091:46,0,52 chr1 201965450 . G A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:63:40,23:0.365079:40,0,54 chr1 201983151 . T TGCCC 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:15:11,4:0.266667:49,0,65 chr1 201983446 . T C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:44:34,10:0.227273:38,0,57 chr1 201983470 . G A 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:65:49,16:0.246154:35,0,61 chr1 201999954 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:92:49,43:0.467391:50,0,60 chr1 202001434 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:74:0,74:1:53,42,0 chr1 202001620 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:41:20,20:0.487805:49,0,53 chr1 202004437 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:75:35,39:0.52:50,0,58 chr1 202012090 . C G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:33,41:0.554054:48,0,50 chr1 202012226 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:21:8,13:0.619048:54,0,60 chr1 202012227 . G C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:21:8,13:0.619048:47,0,52 chr1 202012734 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:42:0,42:1:55,36,0 chr1 202118808 . C A 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:36:24,12:0.333333:30,0,42 chr1 202122918 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:42:0,42:1:51,41,0 chr1 202123232 . G A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:104:0,104:1:57,45,0 chr1 202123287 . A G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:120:0,120:1:59,46,0 chr1 202123452 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:88:0,88:1:55,37,0 chr1 202152515 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:19,15:0.441176:48,0,59 chr1 202160698 . T C 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:95:0,95:1:61,44,0 chr1 202160767 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:41:23,18:0.439024:50,0,54 chr1 202194236 . C G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:26:0,26:1:49,38,0 chr1 202203835 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:74:50,23:0.310811:51,0,57 chr1 202203909 . G C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:53:36,17:0.320755:51,0,58 chr1 202214180 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:86:52,34:0.395349:47,0,52 chr1 202297479 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:45:25,20:0.444444:54,0,62 chr1 202307366 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:112:57,55:0.491071:48,0,54 chr1 202318078 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:69:34,35:0.507246:48,0,56 chr1 202318409 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:99:43,56:0.565657:55,0,57 chr1 202318685 . T C 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:164:97,67:0.408537:39,0,52 chr1 202341995 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:67:34,33:0.492537:48,0,53 chr1 202349188 . A C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:12:3,9:0.75:47,0,39 chr1 202416947 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:15:0,15:1:48,25,0 chr1 202488656 . T A 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:48:19,29:0.604167:42,0,50 chr1 202602421 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:75:42,33:0.44:48,0,49 chr1 202602977 . GCC G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:100:0,99:0.99:55,48,0 chr1 202605656 . G A 30 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:93:61,32:0.344086:29,0,52 chr1 202733925 . G A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:82:56,26:0.317073:42,0,50 chr1 202736327 . G C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:109:60,49:0.449541:48,0,54 chr1 202746116 . G GA 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:33:19,13:0.393939:56,0,65 chr1 202746156 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:47:25,22:0.468085:57,0,61 chr1 202748900 . A G 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:88:54,34:0.386364:40,0,54 chr1 202749074 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:128:74,54:0.421875:51,0,62 chr1 202750645 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:33:20,13:0.393939:47,0,57 chr1 202762858 . C CCTCAA 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:77:43,33:0.428571:44,0,55 chr1 202764110 . C T 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:30:21,9:0.3:33,0,57 chr1 202919819 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:31:0,31:1:55,41,0 chr1 202950939 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:116:49,67:0.577586:56,0,49 chr1 202964651 . G T 27.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:119:79,40:0.336134:27,0,46 chr1 202964739 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:16,13:0.448276:48,0,59 chr1 203020982 . CTT C 21.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:9:0,5:0.555556:21,19,0 chr1 203039046 . G C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:41:0,41:1:56,44,0 chr1 203039158 . C G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:98:58,40:0.408163:48,0,51 chr1 203061079 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:42:17,25:0.595238:48,0,45 chr1 203071688 . G C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:80:50,30:0.375:51,0,60 chr1 203076773 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:68:42,26:0.382353:46,0,59 chr1 203084640 . T C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:60:0,60:1:58,51,0 chr1 203085973 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:16:8,8:0.5:52,0,54 chr1 203129147 . T G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:107:67,40:0.373832:41,0,49 chr1 203165504 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:127:77,50:0.393701:49,0,53 chr1 203168656 . A ACT 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:65:0,60:0.923077:54,47,0 chr1 203174597 . G C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:57:26,31:0.54386:47,0,46 chr1 203179505 . A G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:77:1,76:0.987013:54,41,0 chr1 203185404 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:46:0,46:1:57,41,0 chr1 203186284 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:108:61,47:0.435185:58,0,60 chr1 203186575 . A T 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:74:0,74:1:56,42,0 chr1 203216965 . G A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/0:40:57:0,19:0.333333:61,43,60 chr1 203216965 . G C 61.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:57:0,38:0.666667:61,43,52 chr1 203217736 . TACTC T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:28,34:0.548387:48,0,58 chr1 203217835 . C T 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:109:69,40:0.366972:41,0,54 chr1 203223692 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:45:19,26:0.577778:55,0,59 chr1 203225058 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:67:43,24:0.358209:45,0,53 chr1 203348034 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:109:54,55:0.504587:46,0,46 chr1 203348146 . T G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:89:51,38:0.426966:46,0,47 chr1 203496264 . T G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:11,11:0.5:49,0,54 chr1 203502984 . T C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:80:42,38:0.475:45,0,53 chr1 203627152 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:21,15:0.416667:48,0,62 chr1 203627190 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:18:0,18:1:50,44,0 chr1 203683316 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:70:0,70:1:51,34,0 chr1 203698281 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:67:0,67:1:51,31,0 chr1 203707819 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:15,15:0.5:49,0,58 chr1 203771380 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:89:50,39:0.438202:50,0,52 chr1 203771487 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:46:18,28:0.608696:57,0,56 chr1 203771515 . C T 62.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:22:9,13:0.590909:62,0,64 chr1 203773994 . G A 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:128:66,62:0.484375:40,0,46 chr1 203774525 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:76:44,32:0.421053:51,0,47 chr1 203797699 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:35:16,19:0.542857:57,0,56 chr1 203799200 . T C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:77:45,32:0.415584:48,0,53 chr1 203800404 . G A 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:44:29,15:0.340909:42,0,55 chr1 203818572 . T C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,74:1:58,48,0 chr1 203833888 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:15:0,15:1:48,33,0 chr1 204116481 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:34:1,33:0.970588:49,37,0 chr1 204134490 . G A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:18,13:0.419355:46,0,59 chr1 204146806 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:12,18:0.6:52,0,50 chr1 204156144 . C A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:40:18,22:0.55:55,0,50 chr1 204161248 . G C 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:146:87,59:0.40411:36,0,55 chr1 204173879 . C T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:103:73,30:0.291262:44,0,58 chr1 204201745 . G T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:70:34,36:0.514286:53,0,61 chr1 204229081 . A G 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:79:49,30:0.379747:45,0,52 chr1 204230486 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:176:84,92:0.522727:52,0,50 chr1 204247340 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:25:9,16:0.64:57,0,67 chr1 204247473 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:20,17:0.459459:49,0,57 chr1 204268288 . C T 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:82:57,25:0.304878:36,0,46 chr1 204307299 . A T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:28:12,16:0.571429:48,0,57 chr1 204348714 . ACCC A 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:12:7,5:0.416667:33,0,58 chr1 204348720 . C G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:13:5,8:0.615385:46,0,43 chr1 204434531 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:121:73,48:0.396694:46,0,60 chr1 204440153 . C G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:23:0,23:1:52,36,0 chr1 204444169 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:39:0,38:0.974359:53,40,0 chr1 204444171 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:39:0,39:1:54,45,0 chr1 204446983 . A G 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:54:0,54:1:60,38,0 chr1 204449811 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:56,39,0 chr1 204460710 . C G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:14,23:0.621622:50,0,53 chr1 204463965 . A C 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:19:10,9:0.473684:43,0,52 chr1 204465197 . C CCT 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:50:20,30:0.6:53,0,53 chr1 204465198 . A G 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:54:22,32:0.592593:57,0,58 chr1 204469206 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:21,33:0.611111:47,0,53 chr1 204469515 . G T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:108:63,45:0.416667:48,0,52 chr1 204549714 . C A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:10:5,5:0.5:45,0,57 chr1 204957852 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:65:28,37:0.569231:50,0,53 chr1 204974157 . A T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:55,45,0 chr1 204974819 . C A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:78:38,40:0.512821:52,0,51 chr1 204974863 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:40:16,24:0.6:57,0,58 chr1 204974864 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:40:0,40:1:51,48,0 chr1 204979370 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:24,29:0.54717:51,0,49 chr1 204997300 . C G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:278:0,278:1:54,47,0 chr1 205009515 . C A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:38:22,16:0.421053:54,0,57 chr1 205009576 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:79:42,37:0.468354:52,0,64 chr1 205061988 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:20,22:0.52381:51,0,55 chr1 205062616 . G A 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:142:65,76:0.535211:40,0,49 chr1 205069603 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:55:1,54:0.981818:51,33,0 chr1 205073455 . C T 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:139:65,73:0.52518:52,0,53 chr1 205074122 . G C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:99:55,44:0.444444:46,0,49 chr1 205083811 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:26,12:0.315789:44,0,56 chr1 205084091 . C T 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:61:0,61:1:55,39,0 chr1 205114992 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:17:9,8:0.470588:50,0,61 chr1 205160191 . G A 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:82:57,25:0.304878:37,0,50 chr1 205161285 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:61:0,61:1:58,42,0 chr1 205171479 . C CTTTGAGG 15.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:64:29,20:0.3125:15,0,43 chr1 205271785 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:66:0,66:1:55,39,0 chr1 205303798 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:49:27,22:0.44898:56,0,66 chr1 205303855 . C G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:76:39,37:0.486842:51,0,62 chr1 205306293 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:93:0,93:1:52,47,0 chr1 205321666 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:95:49,45:0.473684:41,0,50 chr1 205339207 . G A 65.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:55:0,55:1:65,50,0 chr1 205339240 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:63:0,63:1:59,48,0 chr1 205343639 . G T 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:6:2,4:0.666667:33,0,42 chr1 205389466 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:1,34:0.971429:51,41,0 chr1 205389613 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:42:26,16:0.380952:46,0,60 chr1 205523628 . A G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:80:1,79:0.9875:56,39,0 chr1 205579828 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:190:93,96:0.505263:53,0,61 chr1 205584957 . G C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:70:38,32:0.457143:45,0,50 chr1 205584967 . A C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:61:35,26:0.42623:50,0,56 chr1 205586017 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:11:0,11:1:43,18,0 chr1 205599262 . T A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:45:29,16:0.355556:40,0,49 chr1 205771701 . T TC 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:10,8:0.444444:48,0,65 chr1 205795512 . G A 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:46:27,19:0.413043:45,0,54 chr1 205797031 . CA C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:14,34:0.708333:50,0,46 chr1 205810103 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:109:62,47:0.431193:49,0,56 chr1 205841927 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:12,21:0.636364:49,0,48 chr1 205842700 . A T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:92:49,43:0.467391:47,0,57 chr1 205845357 . G A 29 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:31:24,7:0.225806:28,0,54 chr1 205845369 . T C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:39:0,39:1:56,54,0 chr1 205845567 . A G 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:22:15,7:0.318182:36,0,46 chr1 205847890 . T C 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:37:18,19:0.513514:24,0,49 chr1 205849911 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:48:21,27:0.5625:58,0,58 chr1 205849976 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:102:44,58:0.568627:52,0,61 chr1 205915146 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:91:47,43:0.472527:51,0,59 chr1 205917253 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:86:43,43:0.5:56,0,60 chr1 205919015 . G C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:43:22,21:0.488372:45,0,55 chr1 205921551 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:39:0,39:1:51,39,0 chr1 205921804 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:129:61,68:0.527132:50,0,48 chr1 205921860 . G T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:52:25,27:0.519231:56,0,65 chr1 205923452 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:47:23,24:0.510638:51,0,56 chr1 205927165 . T G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:14,15:0.517241:45,0,49 chr1 205932658 . T G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:13:9,4:0.307692:48,0,68 chr1 205932660 . G T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:14:4,10:0.714286:52,0,46 chr1 205933114 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:28:14,14:0.5:56,0,65 chr1 205992708 . G A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:21:8,13:0.619048:55,0,63 chr1 206012565 . A G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:91:48,43:0.472527:46,0,51 chr1 206013858 . A G 8.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:76:57,19:0.25:7,0,39 chr1 206021068 . A G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:102:52,50:0.490196:54,0,60 chr1 206061779 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:65:36,29:0.446154:50,0,55 chr1 206101757 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:40:23,17:0.425:48,0,52 chr1 206101928 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:26:19,7:0.269231:39,0,52 chr1 206110179 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:57:25,31:0.54386:56,0,65 chr1 206110345 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:73:35,38:0.520548:45,0,51 chr1 206116320 . C G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:47:28,19:0.404255:51,0,62 chr1 206116501 . C G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:73:39,34:0.465753:48,0,56 chr1 206116919 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:24:10,14:0.583333:49,0,52 chr1 206303233 . C T 24.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:46:37,9:0.195652:24,0,38 chr1 206430185 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:58:38,20:0.344828:43,0,48 chr1 206453261 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:64:33,31:0.484375:50,0,52 chr1 206461084 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:71:42,29:0.408451:43,0,54 chr1 206461181 . T A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:145:83,61:0.42069:50,0,56 chr1 206474444 . T C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:70:0,70:1:57,40,0 chr1 206475035 . G A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:16,27:0.627907:50,0,54 chr1 206477764 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:124:72,52:0.419355:51,0,52 chr1 206479181 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:15:7,8:0.533333:49,0,57 chr1 206491719 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:14,15:0.517241:49,0,50 chr1 206493401 . T G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:21:0,21:1:56,45,0 chr1 206496132 . C T 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:94:56,37:0.393617:41,0,47 chr1 206507650 . A C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:65:0,65:1:57,39,0 chr1 206731119 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:65:28,37:0.569231:53,0,53 chr1 206770888 . A G 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:54:0,54:1:61,44,0 chr1 206842612 . T C 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:26,16:0.380952:44,0,60 chr1 206897800 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:58:34,24:0.413793:49,0,51 chr1 206912957 . A G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:54:36,17:0.314815:41,0,55 chr1 206935771 . C T 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:61:36,25:0.409836:41,0,58 chr1 206935822 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:24:17,7:0.291667:42,0,55 chr1 206937591 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:33:21,12:0.363636:52,0,58 chr1 206960697 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:58:37,21:0.362069:47,0,57 chr1 206965701 . A G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:42:24,18:0.428571:43,0,55 chr1 206967095 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:90:47,43:0.477778:54,0,61 chr1 206970077 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:89:53,35:0.393258:54,0,52 chr1 207022434 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:72:0,72:1:58,43,0 chr1 207089635 . T G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:78:39,39:0.5:43,0,45 chr1 207090484 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:19,19:0.5:48,0,57 chr1 207115552 . T C 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:7:4,3:0.428571:35,0,44 chr1 207124139 . G C 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:26:0,26:1:57,46,0 chr1 207124335 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:43:0,43:1:56,40,0 chr1 207131555 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:48:26,22:0.458333:44,0,58 chr1 207131724 . A C 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:76:45,31:0.407895:40,0,50 chr1 207141319 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:20:13,7:0.35:43,0,57 chr1 207331324 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:9,12:0.571429:49,0,49 chr1 207336944 . T C 65.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:140:0,140:1:65,51,0 chr1 207337203 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:51,33:0.392857:46,0,51 chr1 207337251 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:84:56,28:0.333333:46,0,58 chr1 207359701 . A G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:23,12:0.342857:49,0,54 chr1 207468495 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:96:63,33:0.34375:45,0,55 chr1 207472977 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:69:0,69:1:55,43,0 chr1 207473117 . G A 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:48:0,48:1:60,44,0 chr1 207473553 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:53:0,53:1:58,43,0 chr1 207473578 . G A 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:47:0,47:1:60,46,0 chr1 207480050 . C A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:66:0,66:1:56,50,0 chr1 207480099 . T A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:42:25,17:0.404762:49,0,59 chr1 207489567 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:43:0,43:1:56,47,0 chr1 207489911 . G GT 10.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:8:1,4:0.5:8,0,3 chr1 207505962 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:67:34,32:0.477612:46,0,52 chr1 207545558 . G A 23.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:6:1,5:0.833333:21,1,0 chr1 207584887 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:42:23,19:0.452381:44,0,57 chr1 207609544 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:47:28,19:0.404255:52,0,58 chr1 207609571 . A T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:50:0,50:1:58,59,0 chr1 207609586 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:49:31,18:0.367347:50,0,61 chr1 207621975 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:81:44,37:0.45679:48,0,51 chr1 207708140 . TA T 34.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:8:0,8:1:34,19,0 chr1 207708144 . T G 24.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:7:0,7:1:24,23,0 chr1 207708146 . C A 16.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:7:0,7:1:16,17,0 chr1 207708212 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:12:0,12:1:47,31,0 chr1 207717473 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:24,21:0.456522:47,0,55 chr1 207717708 . A T 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:57:32,25:0.438596:42,0,48 chr1 207757251 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:76:43,33:0.434211:48,0,60 chr1 207767846 . G T 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:13:0,13:1:51,29,0 chr1 207783242 . A G 6.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:15:10,5:0.333333:5,0,40 chr1 207889628 . A T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:18,22:0.55:50,0,52 chr1 207889722 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:16,14:0.466667:47,0,51 chr1 207889755 . G GA 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:44:13,24:0.545455:32,0,36 chr1 208034494 . G A 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:72:0,72:1:60,53,0 chr1 208038879 . C T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:100:65,35:0.35:45,0,54 chr1 208039780 . A G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:45,40,0 chr1 208096899 . A C 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:38:20,18:0.473684:36,0,53 chr1 208244219 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:91:55,36:0.395604:47,0,58 chr1 208244304 . TGGCGGC T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:41:0,41:1:45,41,0 chr1 209432291 . TAGCAGCAGCAGC T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/0:46:61:0,15:0.245902:49,55,59 chr1 209432291 . T TAGC 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:61:0,43:0.704918:49,55,51 chr1 209608998 . A G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:78:49,29:0.371795:40,0,57 chr1 209615342 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:209:124,85:0.406699:54,0,58 chr1 209615358 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:228:128,100:0.438596:55,0,59 chr1 209618670 . A AC 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:24:0,24:1:51,39,0 chr1 209625908 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:60:39,21:0.35:43,0,57 chr1 209627429 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:187:103,84:0.449198:56,0,55 chr1 209630750 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:142:72,70:0.492958:51,0,53 chr1 209638541 . T G 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:79:51,28:0.35443:40,0,54 chr1 209675657 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:39:0,39:1:57,44,0 chr1 209777336 . T C 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:24:15,9:0.375:31,0,55 chr1 209777415 . C G 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:82:59,23:0.280488:33,0,47 chr1 209790458 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:121:70,51:0.421488:52,0,61 chr1 209790735 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:99:59,40:0.40404:50,0,59 chr1 209792242 . G C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:17,20:0.540541:50,0,51 chr1 209795339 . C A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:195:119,76:0.389744:45,0,52 chr1 209802047 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:145:86,59:0.406897:49,0,51 chr1 209842223 . GCT G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:10:5,5:0.5:40,0,47 chr1 210016759 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:29,27:0.482143:48,0,47 chr1 210016897 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:27,18:0.4:48,0,51 chr1 210017144 . AT A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:9:0,9:1:46,24,0 chr1 210241526 . G GT 12.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:18:13,4:0.222222:12,0,41 chr1 210331832 . GGTAAGCAA G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:45:0,45:1:45,31,0 chr1 210331855 . T C 39.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:29:0,29:1:39,28,0 chr1 210404529 . G C 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:78:0,78:1:60,48,0 chr1 210513226 . A G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:10:0,10:1:47,20,0 chr1 210588118 . G C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:91:0,91:1:56,45,0 chr1 210631086 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:88:59,29:0.329545:48,0,60 chr1 210683243 . G T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:25:0,25:1:58,43,0 chr1 210683647 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:109:63,46:0.422018:49,0,55 chr1 210684115 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:58:0,58:1:52,33,0 chr1 211107395 . A AC 30.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:65:8,41:0.630769:26,11,0 chr1 211107395 . A C 30.4 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:65:8,10:0.153846:26,8,26 chr1 211274283 . G A 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:13:9,4:0.307692:40,0,49 chr1 211279336 . G A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:17,12:0.413793:45,0,48 chr1 211360010 . A G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:62:37,25:0.403226:49,0,50 chr1 211481277 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:129:63,66:0.511628:51,0,51 chr1 211491956 . A AG 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:112:67,44:0.392857:39,0,52 chr1 211492048 . GGTGT G 22.2 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:114:5,11:0.0964912:19,8,4 chr1 211492048 . GGT G 22.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:114:5,98:0.859649:19,8,6 chr1 211663447 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:65:0,65:1:57,38,0 chr1 211673534 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:63:1,62:0.984127:49,34,0 chr1 211675465 . A C 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:47:29,18:0.382979:40,0,49 chr1 212044629 . C CTT 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:19:7,12:0.631579:50,0,37 chr1 212068372 . T TAA 4.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:8:3,2:0.25:2,0,17 chr1 212100297 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:78:0,78:1:58,44,0 chr1 212101071 . A C 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:61:0,61:1:60,46,0 chr1 212442533 . T C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:31:17,14:0.451613:44,0,54 chr1 212445997 . T C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:49:31,18:0.367347:40,0,51 chr1 212624909 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:64:29,35:0.546875:54,0,54 chr1 212727145 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:27:0,27:1:50,35,0 chr1 212739531 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:14,15:0.517241:47,0,59 chr1 212787524 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:19:0,19:1:50,34,0 chr1 212883477 . A G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:12:0,12:1:43,25,0 chr1 212885403 . GAAAGT G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:24,23:0.489362:49,0,53 chr1 212888020 . T A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:25:0,25:1:47,38,0 chr1 212895062 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:28:0,28:1:53,40,0 chr1 212895094 . A G 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:25:0,25:1:62,48,0 chr1 212895200 . C CTGAT 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:46:0,44:0.956522:51,39,0 chr1 212951144 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:46:1,45:0.978261:51,38,0 chr1 212951529 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:21:4,17:0.809524:43,0,29 chr1 213004998 . G A 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:11:5,6:0.545455:40,0,52 chr1 213007099 . GA G 33.7 PASS . GT:GQ:DP:AD:VAF:PL 1/0:21:48:8,17:0.354167:33,24,49 chr1 213007099 . G GA 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:48:8,13:0.270833:33,24,53 chr1 213051377 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:32:8,24:0.75:53,0,44 chr1 213378683 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:55:0,55:1:59,43,0 chr1 214318943 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:53:0,53:1:56,36,0 chr1 214369476 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:46:0,46:1:54,36,0 chr1 214377933 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:53:0,53:1:57,40,0 chr1 214390997 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:43:0,43:1:51,41,0 chr1 214393670 . CG C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:30:0,30:1:49,40,0 chr1 214464829 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:36:0,36:1:52,38,0 chr1 214603264 . C G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:55:33,22:0.4:45,0,54 chr1 214618552 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:32:13,19:0.59375:53,0,53 chr1 214630698 . C A 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:81:40,41:0.506173:47,0,40 chr1 214637831 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:15:12,3:0.2:36,0,57 chr1 214637901 . C G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:30:18,12:0.4:55,0,60 chr1 214640144 . A G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:51,31:0.378049:47,0,56 chr1 214640439 . A G 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:39:28,11:0.282051:37,0,58 chr1 214640598 . C G 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:38:27,11:0.289474:30,0,55 chr1 214640782 . G A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:64:49,15:0.234375:31,0,53 chr1 214641239 . G A 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:53:38,15:0.283019:39,0,52 chr1 214641390 . T G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:62:42,20:0.322581:50,0,55 chr1 214641435 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:51:37,14:0.27451:46,0,65 chr1 214641652 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:55:29,26:0.472727:50,0,50 chr1 214642573 . T C 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:60:43,17:0.283333:39,0,48 chr1 214642799 . T G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:87:49,36:0.413793:47,0,55 chr1 214642881 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:68:45,23:0.338235:49,0,55 chr1 214642954 . A G 62 PASS . GT:GQ:DP:AD:VAF:PL 0/1:61:77:49,28:0.363636:62,0,66 chr1 214642974 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:86:50,36:0.418605:48,0,55 chr1 214643372 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:21:6,15:0.714286:50,0,42 chr1 214644872 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:38:30,8:0.210526:46,0,55 chr1 214644880 . T A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:27,8:0.228571:43,0,55 chr1 214645503 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:73:31,42:0.575342:50,0,53 chr1 214645602 . A C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:69:38,31:0.449275:52,0,57 chr1 214645985 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:98:60,38:0.387755:48,0,55 chr1 214646244 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:53:32,21:0.396226:51,0,57 chr1 214646637 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:54:24,30:0.555556:50,0,54 chr1 214646956 . A G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:82:54,28:0.341463:41,0,57 chr1 214647151 . G A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:43:28,15:0.348837:54,0,81 chr1 214647181 . T C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:45:30,15:0.333333:46,0,65 chr1 214652853 . G A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,33:1:57,40,0 chr1 214653021 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:21:0,21:1:56,39,0 chr1 214653467 . CT C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:62:3,47:0.758065:51,33,0 chr1 214657274 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:80:0,80:1:54,38,0 chr1 214663767 . C G 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:59:0,59:1:60,46,0 chr1 215620492 . G A 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:71:0,71:1:61,45,0 chr1 215675245 . T C 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:57:1,56:0.982456:62,47,0 chr1 215675299 . T C 66.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:57:87:0,87:1:66,57,0 chr1 215680406 . GT G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:55:5,45:0.818182:57,50,0 chr1 215723649 . T C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:57:37,20:0.350877:41,0,54 chr1 215741484 . T C 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:89:53,34:0.382022:45,0,45 chr1 215743221 . G A 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:91:63,28:0.307692:38,0,52 chr1 215782962 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:26:0,26:1:57,40,0 chr1 215786825 . T G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:112:0,112:1:59,43,0 chr1 215813880 . T C 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:95:56,39:0.410526:41,0,51 chr1 215838019 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:29,23:0.442308:51,0,53 chr1 215877783 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:94:58,36:0.382979:42,0,50 chr1 215999038 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:0,17:1:48,35,0 chr1 216046439 . A G 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:80:57,23:0.2875:36,0,58 chr1 216073333 . AG A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:81:3,78:0.962963:52,43,0 chr1 216084871 . A G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:50:28,22:0.44:41,0,47 chr1 216175422 . C T 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:69:43,26:0.376812:41,0,49 chr1 216217352 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:8,17:0.68:54,0,48 chr1 216289320 . T A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:112:68,43:0.383929:47,0,57 chr1 216324127 . CCAAT C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:20,15:0.428571:51,0,65 chr1 216418661 . T C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:92:58,34:0.369565:47,0,47 chr1 216421964 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:118:54,64:0.542373:49,0,49 chr1 216519327 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:59:0,58:0.983051:52,37,0 chr1 217498429 . C G 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:52:26,26:0.5:40,0,47 chr1 217630983 . G A 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:40:26,14:0.35:38,0,56 chr1 217771848 . A AAGG 32.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:3:0,3:1:32,11,0 chr1 217774396 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:64:38,26:0.40625:44,0,49 chr1 217862895 . T G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:13:0,13:1:48,28,0 chr1 218322724 . T C 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:68:39,29:0.426471:37,0,57 chr1 218405343 . T TTTGTTG 16.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:54:33,14:0.259259:16,0,43 chr1 218437320 . CT C 7.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:99:44,33:0.333333:6,0,39 chr1 219193058 . T TG 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:12:7,5:0.416667:13,0,38 chr1 219210506 . A ACTTTTT 37.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:3:0,3:1:36,8,0 chr1 219210525 . T C 40.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:5:0,5:1:40,16,0 chr1 219210563 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:26:0,26:1:52,40,0 chr1 219609937 . T A 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:164:63,101:0.615854:27,0,37 chr1 219611745 . A G 11.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:116:84,32:0.275862:10,0,29 chr1 219959023 . T G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:52:24,28:0.538462:48,0,54 chr1 219972029 . T G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:11:0,11:1:48,29,0 chr1 219980904 . AT A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:29:4,21:0.724138:49,39,0 chr1 219981426 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:59:40,19:0.322034:44,0,62 chr1 219982748 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:58:0,58:1:53,40,0 chr1 219988853 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:12:0,12:1:50,22,0 chr1 220005375 . T TA 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:20:1,19:0.95:54,39,0 chr1 220024283 . G T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:71:0,70:0.985915:57,43,0 chr1 220033675 . C T 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:23:0,23:1:59,45,0 chr1 220066106 . T C 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:33:23,10:0.30303:42,0,57 chr1 220615894 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:11:0,11:1:51,30,0 chr1 220616020 . T A 40.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:9:1,8:0.888889:40,16,0 chr1 220635579 . T C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:16:0,16:1:52,38,0 chr1 220652181 . A G 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:30:0,30:1:61,49,0 chr1 220781739 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:42:20,22:0.52381:50,0,49 chr1 220796686 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:80:1,79:0.9875:53,38,0 chr1 220880203 . T C 63.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:100:51,49:0.49:63,0,59 chr1 220880232 . A C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:111:54,57:0.513514:52,0,60 chr1 220881419 . C G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:21:10,11:0.52381:49,0,51 chr1 220882121 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:11:4,7:0.636364:50,0,54 chr1 220884304 . C T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:103:64,38:0.368932:42,0,48 chr1 220884397 . C G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:77:48,29:0.376623:42,0,51 chr1 220884717 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:38:19,19:0.5:40,0,55 chr1 221739019 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:76:38,38:0.5:51,0,48 chr1 222563156 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:24:13,11:0.458333:50,0,50 chr1 222569334 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:30:14,16:0.533333:58,0,60 chr1 222577402 . C T 31.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:9:6,3:0.333333:31,0,48 chr1 222577692 . T C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:15:0,15:1:52,41,0 chr1 222588429 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:33:14,19:0.575758:54,0,53 chr1 222589684 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:32:0,32:1:55,41,0 chr1 222589893 . T G 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:44:22,22:0.5:38,0,53 chr1 222589907 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:39:0,39:1:50,37,0 chr1 222624764 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:24:1,23:0.958333:46,30,0 chr1 222628664 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:45:0,45:1:52,41,0 chr1 222629461 . T G 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:46:0,46:1:62,44,0 chr1 222629584 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:53:0,53:1:55,42,0 chr1 222650401 . T G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:10:0,10:1:47,32,0 chr1 222652061 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:23:0,23:1:52,38,0 chr1 222652375 . T C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,20:1:56,36,0 chr1 222653139 . G A 65.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:37:0,37:1:65,52,0 chr1 222660196 . C G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:53:25,28:0.528302:52,0,53 chr1 222746553 . T G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:24:0,24:1:53,36,0 chr1 222750009 . A G 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:80:0,80:1:59,42,0 chr1 222771925 . A G 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:30:21,9:0.3:39,0,63 chr1 222928597 . A C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:30:0,30:1:57,43,0 chr1 222983040 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:30:0,30:1:54,46,0 chr1 223002933 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:10,13:0.565217:49,0,56 chr1 223005136 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:90:33,57:0.633333:51,0,45 chr1 223005219 . A C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:90:0,90:1:57,53,0 chr1 223111186 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:25,29:0.537037:52,0,48 chr1 223296867 . G A 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:54:35,19:0.351852:41,0,57 chr1 223364043 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:48:0,48:1:59,49,0 chr1 223394461 . G A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:107:55,52:0.485981:42,0,52 chr1 223545289 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:68:0,68:1:53,45,0 chr1 223549417 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:60:0,60:1:50,36,0 chr1 223625884 . G T 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:69:44,25:0.362319:32,0,52 chr1 223626969 . A T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:22,17:0.435897:50,0,52 chr1 223628620 . A G 61.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:27:12,15:0.555556:61,0,66 chr1 223628645 . A G 61.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:31:14,17:0.548387:61,0,64 chr1 223712706 . C G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:63:0,62:0.984127:52,33,0 chr1 223717830 . G A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:100:0,100:1:56,45,0 chr1 223747018 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:61:0,61:1:53,44,0 chr1 223750863 . A C 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:68:40,28:0.411765:39,0,51 chr1 223764139 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:73:45,28:0.383562:50,0,53 chr1 224027679 . C T 34.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:22:0,22:1:34,28,0 chr1 224130449 . T TTTG 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:27:2,25:0.925926:56,49,0 chr1 224157310 . G A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:34:0,34:1:56,43,0 chr1 224281219 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:30,37:0.552239:51,0,57 chr1 224286147 . A C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:20,25:0.555556:52,0,48 chr1 224305044 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:56:27,29:0.517857:52,0,51 chr1 224308150 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:93:44,49:0.526882:55,0,49 chr1 224317868 . T TAA 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:17:0,17:1:56,36,0 chr1 224330140 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:33,47:0.5875:49,0,48 chr1 224398256 . A C 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:46:31,13:0.282609:37,0,53 chr1 224433666 . G C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:61:0,59:0.967213:44,29,0 chr1 224684771 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:80:40,39:0.4875:57,0,64 chr1 224929859 . T C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:12:8,4:0.333333:41,0,54 chr1 224955008 . A T 26 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:17:14,3:0.176471:25,0,45 chr1 224974175 . A G 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:7:4,3:0.428571:42,0,59 chr1 225023720 . T C 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:16,14:0.466667:45,0,56 chr1 225042906 . C T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:17:0,17:1:54,33,0 chr1 225079264 . C G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:14:0,14:1:47,27,0 chr1 225080641 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:36:0,36:1:57,40,0 chr1 225080644 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:32:0,32:1:55,44,0 chr1 225082707 . A T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:27:18,9:0.333333:50,0,58 chr1 225082722 . A T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:19:13,6:0.315789:53,0,63 chr1 225085546 . G T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:25:0,25:1:52,35,0 chr1 225123610 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:33:18,15:0.454545:51,0,54 chr1 225140738 . T G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:27:16,11:0.407407:46,0,55 chr1 225252286 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:13:7,6:0.461538:43,0,54 chr1 225257950 . G T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:16:5,11:0.6875:45,0,44 chr1 225265281 . A G 25.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:21:15,6:0.285714:25,0,55 chr1 225272924 . T A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:14,8:0.363636:45,0,58 chr1 225289844 . A C 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:8:5,3:0.375:33,0,50 chr1 225290091 . T G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:13:6,7:0.538462:40,0,52 chr1 225307466 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:15,13:0.464286:48,0,51 chr1 225322835 . A T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:26:11,15:0.576923:45,0,50 chr1 225331414 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:38:21,17:0.447368:49,0,51 chr1 225333399 . G C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:23,16:0.410256:51,0,54 chr1 225357744 . G C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:31:17,14:0.451613:47,0,51 chr1 225364922 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:12:5,7:0.583333:47,0,40 chr1 225367810 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:21:14,7:0.333333:49,0,58 chr1 225367900 . T G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:49:27,22:0.44898:57,0,56 chr1 225374683 . C T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:25:0,25:1:56,48,0 chr1 225377313 . T C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:46:0,46:1:55,53,0 chr1 225377371 . C T 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:73:49,24:0.328767:42,0,52 chr1 225381539 . T G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:10:0,10:1:49,24,0 chr1 225388356 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:18:0,18:1:49,33,0 chr1 225392391 . G C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:81:45,36:0.444444:51,0,56 chr1 225412467 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:49:29,20:0.408163:51,0,53 chr1 225412681 . A G 24.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:76:56,19:0.25:24,0,50 chr1 225419442 . C T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:24:0,24:1:60,42,0 chr1 225422182 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:135:75,60:0.444444:46,0,56 chr1 225423959 . C T 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:86:0,86:1:60,47,0 chr1 225653420 . C G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:27:15,12:0.444444:46,0,57 chr1 225810609 . G T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:66:33,33:0.5:47,0,50 chr1 225828680 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:61:28,33:0.540984:54,0,58 chr1 225828696 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:73:39,34:0.465753:54,0,63 chr1 225838705 . A G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:82:52,30:0.365854:48,0,60 chr1 225839366 . G GGT 14 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:59:9,39:0.661017:13,0,30 chr1 225844528 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:70:38,32:0.457143:52,0,55 chr1 225857066 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:13:6,7:0.538462:48,0,53 chr1 225866105 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:52:25,27:0.519231:51,0,55 chr1 225867895 . G A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:113:54,59:0.522124:52,0,53 chr1 225887908 . G A 17.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:73:33,40:0.547945:17,0,39 chr1 225920500 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:71:42,29:0.408451:44,0,54 chr1 225921194 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:19,10:0.344828:47,0,55 chr1 225921199 . T G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:32:21,11:0.34375:48,0,55 chr1 225937843 . G GA 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:72:1,71:0.986111:55,38,0 chr1 225939743 . G C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:77:37,40:0.519481:48,0,51 chr1 226065615 . G T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:20:0,20:1:51,39,0 chr1 226309718 . G A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:66:0,66:1:57,41,0 chr1 226367647 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:34:18,16:0.470588:52,0,60 chr1 226383139 . T C 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:55:0,55:1:53,37,0 chr1 226735804 . G T 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:64:0,64:1:61,44,0 chr1 226736237 . A C 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:39,22:0.360656:43,0,53 chr1 226736941 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:66:29,36:0.545455:50,0,45 chr1 226739364 . T G 8.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:5:2,2:0.4:6,0,4 chr1 226870643 . A G 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:11:7,4:0.363636:2,0,43 chr1 226875528 . C T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:104:58,46:0.442308:42,0,55 chr1 226880697 . G T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:124:75,49:0.395161:53,0,58 chr1 226881976 . T C 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:107:0,107:1:60,51,0 chr1 226882036 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:28,22:0.44:45,0,52 chr1 226883663 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:20:16,4:0.2:44,0,64 chr1 226883676 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:29:20,9:0.310345:50,0,53 chr1 226883682 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:29:8,20:0.689655:51,0,53 chr1 226883748 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:85:38,47:0.552941:52,0,48 chr1 226883824 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:144:65,79:0.548611:55,0,54 chr1 226885709 . G C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:27:0,27:1:53,37,0 chr1 226891254 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:26:0,26:1:56,43,0 chr1 226894149 . G A 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:23:15,8:0.347826:39,0,46 chr1 226940407 . T C 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:18:7,11:0.611111:43,0,51 chr1 226961448 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:85:61,24:0.282353:46,0,61 chr1 226961502 . G A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:77:52,25:0.324675:41,0,53 chr1 226983883 . GT G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:21:8,13:0.619048:43,0,47 chr1 226984257 . G C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:106:43,63:0.59434:51,0,54 chr1 226984589 . C T 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:172:109,63:0.366279:40,0,49 chr1 226985234 . C G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:36:0,36:1:54,47,0 chr1 226986421 . C G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:73:43,30:0.410959:53,0,58 chr1 226986444 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:88:0,88:1:58,54,0 chr1 226986509 . T C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:135:0,135:1:51,42,0 chr1 226994222 . C T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:26:0,26:1:58,34,0 chr1 226994332 . G A 64.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:124:0,124:1:64,52,0 chr1 226994874 . A G 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:63:1,62:0.984127:59,39,0 chr1 227011074 . C G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:26:14,12:0.461538:57,0,70 chr1 227030368 . C CAT 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:13:0,13:1:48,34,0 chr1 227033422 . G A 18.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:71:53,17:0.239437:18,0,35 chr1 227034814 . G GACAA 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:27:0,27:1:60,47,0 chr1 227051861 . G C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:27,20:0.425532:49,0,53 chr1 227072183 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:29:11,18:0.62069:52,0,45 chr1 227100954 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:12:0,12:1:47,28,0 chr1 227112277 . C T 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:19:12,7:0.368421:39,0,52 chr1 227143058 . A G 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:28:12,16:0.571429:39,0,45 chr1 227145440 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:8:4,4:0.5:38,0,46 chr1 227193973 . TA T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:24:9,14:0.583333:47,0,53 chr1 227199660 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:17:0,17:1:46,29,0 chr1 227646532 . TC T 22.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:7:2,5:0.714286:22,0,28 chr1 227732360 . T G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:11,11:0.5:45,0,52 chr1 227735217 . A C 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:21:12,9:0.428571:42,0,56 chr1 227735380 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:10:0,10:1:45,21,0 chr1 227747654 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:15,15:0.5:54,0,53 chr1 227747743 . A G 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:97:68,29:0.298969:34,0,49 chr1 227786954 . G C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:28:16,12:0.428571:45,0,53 chr1 227816170 . G A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:109:64,44:0.40367:39,0,58 chr1 227845496 . A G 65.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:99:0,99:1:65,56,0 chr1 227924420 . A G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:23:12,11:0.478261:41,0,48 chr1 227925462 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:44:0,44:1:55,41,0 chr1 227969993 . C T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:87:43,43:0.494253:44,0,46 chr1 228083263 . G C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:80:33,47:0.5875:55,0,47 chr1 228097878 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:110:55,55:0.5:51,0,53 chr1 228140177 . G A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:37:21,16:0.432432:41,0,57 chr1 228165950 . G C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:57:32,25:0.438596:47,0,44 chr1 228208093 . C G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:43,41:0.488095:49,0,50 chr1 228211781 . C G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:43:0,43:1:52,41,0 chr1 228212065 . T C 64.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:92:1,91:0.98913:64,52,0 chr1 228214346 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:100:0,99:0.99:59,45,0 chr1 228214420 . A G 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:46:0,46:1:58,48,0 chr1 228215547 . G T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:28:8,20:0.714286:54,0,43 chr1 228216967 . T C 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:13:9,4:0.307692:37,0,51 chr1 228217296 . C T 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:194:106,88:0.453608:43,0,51 chr1 228219355 . G A 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:41:21,20:0.487805:56,0,58 chr1 228219358 . G T 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:44:22,22:0.5:55,0,56 chr1 228224526 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:47:23,24:0.510638:47,0,49 chr1 228224607 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:16,19:0.542857:49,0,51 chr1 228246766 . T C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:23,20:0.465116:46,0,55 chr1 228256864 . T A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,37:1:55,44,0 chr1 228273329 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:54:25,29:0.537037:52,0,51 chr1 228273428 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:78:40,38:0.487179:52,0,57 chr1 228276547 . T G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:102:48,54:0.529412:54,0,60 chr1 228276736 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:113:59,54:0.477876:47,0,44 chr1 228277141 . C G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:18,22:0.55:51,0,56 chr1 228279461 . C T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:50:22,28:0.56:57,0,54 chr1 228292581 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:32:14,18:0.5625:52,0,52 chr1 228294327 . G C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:101:49,52:0.514852:50,0,48 chr1 228294463 . T A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:21:10,11:0.52381:47,0,56 chr1 228300152 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:29:13,16:0.551724:47,0,50 chr1 228306681 . T C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:12:2,10:0.833333:44,0,24 chr1 228306995 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:82:36,46:0.560976:56,0,59 chr1 228308313 . G A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:76:30,46:0.605263:51,0,45 chr1 228315865 . G A 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:84:55,29:0.345238:40,0,47 chr1 228315976 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:94:52,42:0.446809:50,0,62 chr1 228316771 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:76:42,34:0.447368:52,0,58 chr1 228317000 . G GCTCC 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:28:16,11:0.392857:43,0,56 chr1 228317503 . G A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:61:35,25:0.409836:45,0,50 chr1 228317967 . C G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:71:37,33:0.464789:51,0,56 chr1 228317998 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:96:50,46:0.479167:57,0,61 chr1 228321726 . A G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:131:72,58:0.442748:49,0,49 chr1 228335075 . C A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:100:53,47:0.47:49,0,53 chr1 228335746 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:24:15,9:0.375:45,0,55 chr1 228335901 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:19,19:0.5:43,0,54 chr1 228340862 . C G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:56:28,28:0.5:44,0,51 chr1 228341418 . C CA 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:67:32,34:0.507463:50,0,57 chr1 228359810 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:50:26,24:0.48:49,0,45 chr1 228360200 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:98:51,47:0.479592:54,0,59 chr1 228360415 . C A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:61:37,24:0.393443:45,0,55 chr1 228361574 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:131:63,68:0.519084:43,0,51 chr1 228361708 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:125:61,64:0.512:51,0,58 chr1 228361767 . T A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:129:57,71:0.550388:53,0,52 chr1 228362253 . T C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:35,21:0.375:46,0,58 chr1 228364870 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:56:27,29:0.517857:52,0,55 chr1 228365387 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:11,13:0.541667:52,0,54 chr1 228369087 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:80:45,35:0.4375:49,0,54 chr1 228371685 . G A 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:48:26,22:0.458333:45,0,44 chr1 228372293 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:83:0,83:1:54,42,0 chr1 228372438 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:118:1,117:0.991525:59,46,0 chr1 228372999 . T C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:34:0,34:1:49,32,0 chr1 228376900 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:57:24,33:0.578947:48,0,49 chr1 228400979 . A C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:41:17,24:0.585366:53,0,50 chr1 228408252 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:74:42,32:0.432432:49,0,55 chr1 228409077 . A AC 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:123:54,66:0.536585:51,0,58 chr1 228413937 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:57:34,23:0.403509:50,0,53 chr1 228414821 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:54:30,24:0.444444:49,0,57 chr1 228414959 . G C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:67:45,22:0.328358:43,0,52 chr1 228415115 . T C 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:26:16,10:0.384615:43,0,55 chr1 228425137 . G T 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:46:30,16:0.347826:37,0,55 chr1 228425351 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:9:0,9:1:45,19,0 chr1 228511776 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:73:35,38:0.520548:57,0,52 chr1 228735946 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:21,21:0.5:53,0,53 chr1 229249922 . TTC T 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:55:29,26:0.472727:40,0,58 chr1 229286446 . T C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:8:0,8:1:45,24,0 chr1 229325277 . C T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:61:0,61:1:57,39,0 chr1 229431916 . C G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:51,56:0.523364:49,0,51 chr1 229432557 . G T 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:31:19,12:0.387097:36,0,46 chr1 229432885 . A G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:18,10:0.357143:42,0,55 chr1 229434056 . A G 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:137:0,137:1:61,53,0 chr1 229434057 . G A 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:137:0,137:1:59,51,0 chr1 229445047 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:12,7:0.368421:43,0,45 chr1 229463692 . A C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:20:7,13:0.65:50,0,51 chr1 229486415 . A G 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:64:46,18:0.28125:37,0,52 chr1 229487591 . T C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:38:25,13:0.342105:45,0,61 chr1 229518306 . T C 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:99:50,49:0.494949:39,0,48 chr1 229527317 . GAGGAA G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:38:0,38:1:43,33,0 chr1 229547517 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:21,20:0.487805:46,0,57 chr1 229549415 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:20,13:0.393939:46,0,53 chr1 229602489 . G A 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:95:53,42:0.442105:58,0,60 chr1 229614289 . C T 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:90:63,27:0.3:36,0,51 chr1 229647489 . T C 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:0,24:1:51,40,0 chr1 229654301 . A G 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:144:85,59:0.409722:42,0,50 chr1 229659323 . T G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:16:7,9:0.5625:45,0,54 chr1 230116076 . G A 27.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:74:54,20:0.27027:27,0,49 chr1 230236137 . G A 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:63:0,63:1:58,46,0 chr1 230249191 . T C 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:60:39,21:0.35:44,0,52 chr1 230250428 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:47:24,23:0.489362:51,0,62 chr1 230250595 . T A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:31:15,16:0.516129:53,0,57 chr1 230265888 . G T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:24:4,20:0.833333:38,9,0 chr1 230274416 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:40:23,17:0.425:49,0,58 chr1 230279279 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:57:0,57:1:56,40,0 chr1 230279498 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:12,18:0.6:49,0,53 chr1 230325333 . G A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:61:37,24:0.393443:44,0,55 chr1 230659431 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:44:0,44:1:52,38,0 chr1 230705941 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:41:0,41:1:57,47,0 chr1 230710048 . A G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:92:1,91:0.98913:60,50,0 chr1 230714053 . A G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:10:0,10:1:44,26,0 chr1 230714126 . C T 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:56:0,56:1:61,44,0 chr1 230714337 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:96:0,95:0.989583:58,42,0 chr1 230906986 . T A 34.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:25:17,8:0.32:34,0,47 chr1 230911564 . TAC T 42 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:20:0,20:1:41,30,0 chr1 230921541 . A C 33.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:2:0,2:1:32,6,0 chr1 230924990 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:60:32,28:0.466667:46,0,53 chr1 230931490 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:10,14:0.583333:51,0,54 chr1 230933906 . A C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:20:0,20:1:51,37,0 chr1 230978849 . C T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:18:12,6:0.333333:42,0,55 chr1 231162953 . T G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:49:23,26:0.530612:51,0,54 chr1 231186197 . C A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:36:24,12:0.333333:43,0,53 chr1 231187593 . A G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:49:34,15:0.306122:41,0,50 chr1 231199034 . C A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:20,18:0.473684:51,0,55 chr1 231241060 . G C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:80:51,29:0.3625:47,0,54 chr1 231241335 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:60:26,34:0.566667:52,0,52 chr1 231262809 . A G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:63:36,27:0.428571:48,0,57 chr1 231265458 . T C 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:41:31,10:0.243902:36,0,53 chr1 231266156 . G A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:30,20:0.4:45,0,56 chr1 231335522 . AT A 36.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:9:0,9:1:36,25,0 chr1 231421509 . C G 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:12:6,6:0.5:35,0,48 chr1 231561284 . G A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:8:0,8:1:42,17,0 chr1 231564500 . TTTTTG T 20.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:35:16,19:0.542857:20,0,50 chr1 231564501 . T G 23.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:16:0,16:1:23,0,25 chr1 231813193 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:19,19:0.5:50,0,45 chr1 231855168 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:18,13:0.419355:47,0,62 chr1 231855242 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:15:9,6:0.4:50,0,61 chr1 231855253 . AAG A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:8:5,3:0.375:49,0,57 chr1 231855264 . A ATATT 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:8:5,3:0.375:43,0,49 chr1 232008852 . A T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:63:28,35:0.555556:56,0,51 chr1 232009141 . A G 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:17:9,8:0.470588:42,0,55 chr1 232399284 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:47:0,47:1:56,41,0 chr1 232415670 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:35:14,21:0.6:57,0,58 chr1 232432238 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:34:16,18:0.529412:56,0,61 chr1 232432295 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:79:49,30:0.379747:49,0,58 chr1 232439175 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:20,25:0.543478:54,0,58 chr1 232445501 . C G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:18:7,11:0.611111:44,0,47 chr1 232465047 . T C 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:59:35,24:0.40678:44,0,46 chr1 232465462 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:34:19,15:0.441176:52,0,63 chr1 232471348 . T C 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:13:8,5:0.384615:40,0,59 chr1 232515004 . A G 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:87:0,87:1:60,47,0 chr1 232515121 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:101:52,49:0.485149:55,0,54 chr1 232805407 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:41,28:0.405797:46,0,62 chr1 232805608 . G T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:86:36,50:0.581395:57,0,56 chr1 232950710 . T C 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:55:34,21:0.381818:46,0,48 chr1 232969866 . A C 8.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:12:7,5:0.416667:7,0,45 chr1 232986045 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:120:63,57:0.475:48,0,51 chr1 232986381 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:72:43,29:0.402778:46,0,55 chr1 232998340 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:109:68,40:0.366972:43,0,54 chr1 233017164 . A AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:11:3,3:0.272727:46,0,44 chr1 233227184 . G A 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:25:0,25:1:59,48,0 chr1 233252535 . G C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:36:19,17:0.472222:52,0,60 chr1 233258502 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:73:39,34:0.465753:45,0,51 chr1 233353783 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,37:1:51,45,0 chr1 233353936 . G A 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:74:44,30:0.405405:43,0,48 chr1 233353961 . G T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:46:1,45:0.978261:48,41,0 chr1 233354790 . A AATGTCTTGGGGATAATCTG 41 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:17:0,12:0.705882:40,30,0 chr1 233354797 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:20:0,20:1:46,40,0 chr1 233355018 . G T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:27:0,27:1:50,38,0 chr1 233355030 . C T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:26:0,26:1:57,54,0 chr1 233614150 . C CTTGGCTTTGGCT 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:47:0,43:0.914894:54,48,0 chr1 233905676 . G C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:117:59,58:0.495726:51,0,49 chr1 234373513 . G C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:50:0,50:1:56,46,0 chr1 234383706 . C CT 42.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:20:1,16:0.8:42,8,0 chr1 234393773 . C T 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:57:39,18:0.315789:39,0,53 chr1 234393794 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:43:34,9:0.209302:41,0,57 chr1 234393806 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:31,9:0.225:48,0,61 chr1 234393824 . G A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:23,5:0.178571:41,0,59 chr1 234405876 . G T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:39:23,15:0.384615:45,0,55 chr1 234410499 . C T 32 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:2:0,2:1:31,7,0 chr1 234425648 . ATAATT A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:14:2,12:0.857143:49,0,37 chr1 234427810 . T A 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:12:8,4:0.333333:38,0,53 chr1 234429118 . GAA G 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:17:14,3:0.176471:33,0,63 chr1 234429332 . G GA 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:15:5,9:0.6:27,0,30 chr1 234429430 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:64:37,27:0.421875:52,0,58 chr1 234430041 . G A 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:10:6,4:0.4:32,0,49 chr1 234430339 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:24:14,10:0.416667:47,0,63 chr1 234433446 . T C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:63:37,26:0.412698:48,0,55 chr1 234446974 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:40:17,23:0.575:54,0,56 chr1 234448430 . T G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:19:12,7:0.368421:43,0,61 chr1 234448542 . G A 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:78:57,21:0.269231:36,0,42 chr1 234463811 . T TA 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:11:5,6:0.545455:47,0,49 chr1 234467459 . C T 29.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:9:6,3:0.333333:29,0,54 chr1 234467576 . A T 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:43:27,16:0.372093:34,0,51 chr1 234471252 . A G 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:14:10,4:0.285714:35,0,56 chr1 234607491 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:85:42,43:0.505882:49,0,56 chr1 234608422 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:13,15:0.535714:54,0,50 chr1 234609263 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:24:0,24:1:47,35,0 chr1 235138181 . CA C 6.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:16:4,8:0.5:3,0,35 chr1 235138181 . C CA 6.2 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:16:4,3:0.1875:3,2,35 chr1 235193988 . A ATG 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:6:2,4:0.666667:46,0,48 chr1 235193999 . AT A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:9:3,6:0.666667:45,0,35 chr1 235194228 . A G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:17:10,7:0.411765:47,0,59 chr1 235219873 . A G 10.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:49:40,9:0.183673:10,0,38 chr1 235229231 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:17,27:0.6:54,0,47 chr1 235231226 . A C 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:7:4,3:0.428571:34,0,42 chr1 235341998 . A AT 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:34:14,20:0.588235:52,0,53 chr1 235437290 . C T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:28:19,9:0.321429:44,0,59 chr1 235465591 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:25:0,25:1:53,45,0 chr1 235484315 . T G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:45:0,45:1:56,41,0 chr1 235489208 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:35:0,35:1:51,37,0 chr1 235552223 . A G 33.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:70:48,22:0.314286:33,0,45 chr1 235552256 . C G 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:53:32,21:0.396226:41,0,63 chr1 235583705 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:31:19,12:0.387097:45,0,60 chr1 235583854 . A G 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:48:25,23:0.479167:39,0,56 chr1 235977874 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:160:0,159:0.99375:59,49,0 chr1 235978953 . T G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:33:0,33:1:51,38,0 chr1 235981651 . A G 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:65:0,65:1:62,47,0 chr1 235991065 . G T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:1,48:0.979592:54,39,0 chr1 236012039 . T C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:61:29,32:0.52459:49,0,52 chr1 236045473 . C T 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:56:0,56:1:57,42,0 chr1 236045724 . C G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:17:0,17:1:53,32,0 chr1 236205252 . T TAAGA 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:44:14,24:0.545455:55,0,57 chr1 236218525 . G C 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:26:22,4:0.153846:34,0,49 chr1 236218597 . T A 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:19:15,4:0.210526:31,0,57 chr1 236218617 . T A 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:9:7,2:0.222222:34,0,52 chr1 236220978 . G C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:16:7,9:0.5625:51,0,58 chr1 236222060 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:16:4,12:0.75:58,0,56 chr1 236225046 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:63:38,25:0.396825:47,0,55 chr1 236249930 . T A 3.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:23:19,4:0.173913:1,0,34 chr1 236269835 . AT A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:11:4,7:0.636364:46,0,48 chr1 236394471 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:27:0,27:1:50,46,0 chr1 236482370 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:47,44:0.483516:49,0,54 chr1 236537507 . T A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:10:0,10:1:42,22,0 chr1 236537523 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:9:0,9:1:47,20,0 chr1 236537557 . C T 42.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:10:0,10:1:42,22,0 chr1 236538853 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:18:0,18:1:50,36,0 chr1 236538909 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:53:0,52:0.981132:57,48,0 chr1 236538910 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:55:0,55:1:52,45,0 chr1 236539074 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:42:0,42:1:51,44,0 chr1 236540532 . CG C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:20:0,20:1:44,28,0 chr1 236543052 . A C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:20:0,20:1:50,38,0 chr1 236543071 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:16:0,16:1:48,36,0 chr1 236543562 . G C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:47:0,47:1:55,43,0 chr1 236544722 . GT G 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:22:0,22:1:57,44,0 chr1 236544924 . A C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:20:0,20:1:55,39,0 chr1 236545243 . CG C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:21:0,21:1:48,32,0 chr1 236547997 . A T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:14:0,14:1:52,34,0 chr1 236548023 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:25:0,25:1:50,38,0 chr1 236550992 . T TAA 6.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:44:3,21:0.477273:5,41,0 chr1 236551035 . C T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:23:0,23:1:54,43,0 chr1 236553659 . C T 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:107:0,107:1:62,44,0 chr1 236554626 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,20:1:48,36,0 chr1 236555261 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:38:0,38:1:59,50,0 chr1 236555320 . T C 63.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:80:0,80:1:63,52,0 chr1 236555835 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:35:0,35:1:54,47,0 chr1 236555893 . A G 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:32:0,32:1:60,47,0 chr1 236555959 . G A 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:20:0,20:1:62,44,0 chr1 236558310 . G A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:56:0,56:1:61,43,0 chr1 236558360 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:72:0,72:1:53,47,0 chr1 236559707 . C A 23.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:41:30,11:0.268293:23,0,46 chr1 236559877 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:22:0,22:1:51,34,0 chr1 236559878 . C A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:22:0,22:1:53,47,0 chr1 236561204 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:21:0,21:1:57,45,0 chr1 236561305 . G T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:19:0,19:1:54,35,0 chr1 236576739 . G C 46.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:14:0,13:0.928571:46,26,0 chr1 236581412 . C A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:22:0,22:1:51,35,0 chr1 236582975 . G C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:42:0,42:1:58,47,0 chr1 236583143 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:44:0,44:1:54,37,0 chr1 236585205 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:52:0,52:1:53,42,0 chr1 236586349 . T C 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:60:0,60:1:59,47,0 chr1 236592127 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:26:0,26:1:56,39,0 chr1 236592514 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:7:0,7:1:46,20,0 chr1 236592537 . C T 39.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:7:0,7:1:39,20,0 chr1 236595587 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:44:0,44:1:54,42,0 chr1 236604030 . A G 64.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:96:0,96:1:64,52,0 chr1 236719003 . T C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:66:0,66:1:57,47,0 chr1 236720121 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:56:0,56:1:55,44,0 chr1 236731347 . G A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:17:9,8:0.470588:43,0,56 chr1 236735742 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:44,43:0.494253:49,0,54 chr1 236736599 . TC T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:128:76,52:0.40625:46,0,58 chr1 236736718 . G A 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:36:23,13:0.361111:38,0,53 chr1 236739260 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:16:6,10:0.625:54,0,63 chr1 236739294 . C G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:15,16:0.516129:49,0,66 chr1 236739565 . A C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:22:7,15:0.681818:54,0,52 chr1 236761206 . A G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:21:0,21:1:59,43,0 chr1 236795232 . G T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:16:9,7:0.4375:45,0,50 chr1 236813843 . T C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:25:16,9:0.36:41,0,62 chr1 236813977 . A C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:43,28:0.394366:51,0,61 chr1 236815692 . T TTCTG 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:42:2,37:0.880952:54,43,0 chr1 236824212 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:109:57,52:0.477064:49,0,48 chr1 236824490 . G T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:17:10,7:0.411765:45,0,55 chr1 236825293 . A AT 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:40:23,17:0.425:52,0,56 chr1 236838626 . A G 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:135:80,55:0.407407:44,0,58 chr1 236861079 . TTTTC T 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:51:31,20:0.392157:36,0,63 chr1 236874698 . CT C 34 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:19:3,16:0.842105:33,10,0 chr1 236885200 . A G 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:37:26,11:0.297297:39,0,55 chr1 236885262 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:10:0,10:1:49,29,0 chr1 236886579 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:36:22,14:0.388889:45,0,55 chr1 236891269 . A G 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:118:62,56:0.474576:39,0,56 chr1 236891499 . A G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:48:0,48:1:56,42,0 chr1 236894308 . G A 63.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:44:0,44:1:63,50,0 chr1 236895444 . C A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:90:36,54:0.6:50,0,55 chr1 236895528 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:96:0,95:0.989583:54,52,0 chr1 236895696 . C CTATT 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:39:1,35:0.897436:61,51,0 chr1 236897133 . G T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:53:0,53:1:56,47,0 chr1 236897645 . CT C 25.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:91:27,41:0.450549:25,0,19 chr1 236897756 . A C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:18:0,18:1:48,36,0 chr1 236900035 . G C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:41:0,41:1:51,42,0 chr1 236900204 . A G 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:17:7,10:0.588235:36,0,52 chr1 237388076 . T A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:53:23,30:0.566038:53,0,52 chr1 237454457 . C T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:87:0,87:1:58,50,0 chr1 237456575 . A AT 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:34:5,23:0.676471:51,42,0 chr1 237456749 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:50:0,50:1:58,44,0 chr1 237491873 . A T 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:13:7,6:0.461538:39,0,51 chr1 237506840 . A G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:20:15,5:0.25:45,0,56 chr1 237548497 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:107:0,107:1:58,48,0 chr1 237566824 . A G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:25:0,25:1:60,49,0 chr1 237569095 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:21:12,9:0.428571:52,0,60 chr1 237589774 . AT A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:34:13,20:0.588235:43,0,55 chr1 237591040 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:66:38,28:0.424242:56,0,59 chr1 237591888 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:41:25,16:0.390244:49,0,61 chr1 237591903 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:30:17,13:0.433333:57,0,68 chr1 237594070 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:100:65,35:0.35:52,0,56 chr1 237633537 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:17:0,17:1:54,38,0 chr1 237638470 . T C 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:79:0,79:1:61,51,0 chr1 237651483 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:31:0,31:1:58,46,0 chr1 237700418 . T G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:0,54:1:53,44,0 chr1 237718470 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:50:0,49:0.98:56,46,0 chr1 237727137 . C T 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:83:0,81:0.975904:61,44,0 chr1 237730374 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:36:0,36:1:55,46,0 chr1 237742268 . T TC 15.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:43:23,19:0.44186:15,0,34 chr1 237759753 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:21:8,13:0.619048:55,0,51 chr1 237788151 . A G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:41:23,18:0.439024:45,0,53 chr1 237788182 . G A 64 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:13:4,9:0.692308:63,0,68 chr1 237792064 . A G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:39:22,17:0.435897:44,0,56 chr1 237792349 . CTGTGTGTGTG C 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:76:57,11:0.144737:22,0,41 chr1 237793846 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:20:13,7:0.35:55,0,62 chr1 237793861 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:35:20,15:0.428571:54,0,56 chr1 237794009 . A C 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:16:8,8:0.5:35,0,52 chr1 237801831 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:24,21:0.466667:48,0,66 chr1 237801833 . A AT 45 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:45:18,12:0.266667:42,0,55 chr1 237801833 . A ATT 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:45:18,9:0.2:42,0,57 chr1 237890618 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:74:37,37:0.5:49,0,51 chr1 239545629 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:7:0,7:1:47,20,0 chr1 239545684 . A T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:20:0,20:1:52,36,0 chr1 240092268 . GGGC G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:140:75,63:0.45:48,0,60 chr1 240177968 . A G 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:108:62,46:0.425926:45,0,58 chr1 240207641 . T C 16.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:60:51,8:0.133333:16,0,45 chr1 240207812 . G T 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:53:34,15:0.283019:22,0,19 chr1 240208254 . A G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:74:0,71:0.959459:40,34,0 chr1 240329114 . T C 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:92:60,32:0.347826:37,0,59 chr1 240329434 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:87:46,41:0.471264:52,0,53 chr1 240333965 . A C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:21:0,21:1:50,37,0 chr1 240493497 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:128:72,56:0.4375:49,0,56 chr1 240493524 . C A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:96:44,52:0.541667:48,0,55 chr1 240531714 . CTT C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:34,22:0.289474:43,0,64 chr1 241355798 . T A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:42:0,41:0.97619:51,34,0 chr1 241504223 . C T 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:84:60,24:0.285714:33,0,55 chr1 241513735 . T A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:49:19,30:0.612245:53,0,53 chr1 241532492 . T C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:63:36,27:0.428571:48,0,58 chr1 241532545 . C G 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:15:9,6:0.4:39,0,59 chr1 241548810 . A AT 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:34:28,6:0.176471:30,0,52 chr1 241548834 . C T 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:32:25,7:0.21875:34,0,55 chr1 241562212 . A T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:91:51,40:0.43956:50,0,59 chr1 241592046 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:108:64,44:0.407407:49,0,51 chr1 241598047 . T C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:15:6,9:0.6:44,0,54 chr1 241604628 . G A 64.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:38:0,38:1:64,48,0 chr1 241674755 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:23:0,22:0.956522:56,43,0 chr1 241674763 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:23:0,23:1:56,51,0 chr1 241683716 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,20:1:48,36,0 chr1 241744515 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:22,28:0.56:54,0,48 chr1 241757260 . C T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:19:8,11:0.578947:53,0,54 chr1 241766240 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:22:10,12:0.545455:52,0,54 chr1 241772753 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:43:21,22:0.511628:51,0,62 chr1 241787804 . A G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:8:0,8:1:45,19,0 chr1 241788027 . C T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:23:15,8:0.347826:42,0,61 chr1 241801257 . C G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:44:22,22:0.5:47,0,53 chr1 241866849 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:49:0,49:1:53,39,0 chr1 241872136 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:58:33,25:0.431034:48,0,52 chr1 241878999 . G A 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:57:37,20:0.350877:38,0,53 chr1 241879243 . A G 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:78:0,78:1:62,48,0 chr1 241879388 . A G 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:15:9,6:0.4:39,0,55 chr1 241881973 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:21:0,19:0.904762:49,33,0 chr1 241958075 . T G 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:112:64,48:0.428571:45,0,49 chr1 242100800 . A G 42 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:61:0,57:0.934426:41,34,0 chr1 242348254 . AACAAAG A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:21:3,18:0.857143:47,30,0 chr1 242524088 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:54:25,28:0.518519:45,0,48 chr1 243191489 . C T 37.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:11:0,11:1:37,30,0 chr1 243199029 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:37:0,37:1:52,47,0 chr1 243256127 . T A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:38:0,38:1:55,41,0 chr1 243415810 . G A 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:102:0,102:1:62,50,0 chr1 243572908 . CT C 43.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:49:2,34:0.693878:43,50,0 chr1 243613764 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,37:1:58,44,0 chr1 243659470 . T TA 32.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:7:0,7:1:32,14,0 chr1 244055100 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:111:63,48:0.432432:49,0,49 chr1 244363988 . GC G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:121:12,108:0.892562:54,45,0 chr1 244461333 . G C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:12:0,12:1:43,23,0 chr1 244583526 . T A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:125:0,125:1:56,53,0 chr1 244639903 . CTT C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:26:0,21:0.807692:45,22,0 chr1 244730596 . G A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:23:9,14:0.608696:49,0,43 chr1 244730681 . C G 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:11:5,6:0.545455:38,0,48 chr1 244842071 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:25,21:0.456522:48,0,53 chr1 244842190 . T TG 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:14,12:0.461538:49,0,68 chr1 244843190 . T TAGAAA 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:21:12,8:0.380952:45,0,31 chr1 244857989 . TA T 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:116:42,65:0.560345:38,0,53 chr1 244970187 . T G 61.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:46:26,20:0.434783:61,0,62 chr1 244970237 . A G 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:59:38:0,38:1:62,62,0 chr1 244970247 . GGC G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:20,18:0.473684:51,0,66 chr1 244970321 . T TCCTCC 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:45:31,13:0.288889:53,0,71 chr1 244970360 . G C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:70:48,22:0.314286:50,0,60 chr1 245082076 . T C 12.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:27:22,5:0.185185:11,0,40 chr1 245107139 . C G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:47:33,14:0.297872:41,0,58 chr1 245107221 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:50:24,26:0.52:47,0,42 chr1 245155386 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:42:18,24:0.571429:48,0,49 chr1 245540828 . G C 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:169:114,55:0.325444:34,0,46 chr1 245609227 . A G 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:35:0,35:1:57,47,0 chr1 245684413 . TG T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:116:45,70:0.603448:50,0,50 chr1 245686427 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:112:61,51:0.455357:46,0,48 chr1 245687204 . G C 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:110:58,52:0.472727:43,0,44 chr1 245687987 . G T 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:123:71,52:0.422764:58,0,58 chr1 245688002 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:140:81,58:0.414286:51,0,57 chr1 245858639 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:91:0,91:1:56,40,0 chr1 246108086 . C G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:34:0,34:1:51,37,0 chr1 246326404 . GA G 31.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:59:28,22:0.372881:31,0,50 chr1 246507031 . A G 40.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:38:0,38:1:40,42,0 chr1 246507179 . C G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:102:0,102:1:53,48,0 chr1 246548514 . GA G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:19:0,19:1:46,33,0 chr1 246551285 . G A 45.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:14:0,14:1:45,31,0 chr1 246551329 . T A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:11:0,11:1:48,34,0 chr1 246551330 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:11:0,11:1:48,29,0 chr1 246551334 . T A 43 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:11:0,11:1:42,28,0 chr1 246591822 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:71:0,71:1:53,43,0 chr1 246766181 . A G 19.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:12:9,3:0.25:19,0,43 chr1 246861024 . G A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:75:40,35:0.466667:43,0,52 chr1 246885532 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:24:13,11:0.458333:50,0,50 chr1 246931368 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:28:18,10:0.357143:43,0,56 chr1 246987438 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:9,10:0.526316:49,0,59 chr1 246988185 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:41:25,16:0.390244:52,0,55 chr1 246988255 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:21:11,10:0.47619:49,0,58 chr1 246999326 . C T 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:26:18,8:0.307692:37,0,57 chr1 246999356 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:54:0,54:1:51,52,0 chr1 246999885 . T C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:5:0,5:1:38,13,0 chr1 247038289 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:60:38,22:0.366667:47,0,57 chr1 247078548 . G C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:82:44,37:0.451219:50,0,62 chr1 247256207 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:73:0,73:1:56,44,0 chr1 247256362 . C T 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:46:0,46:1:61,48,0 chr1 247302720 . G A 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:146:91,55:0.376712:38,0,50 chr1 247323119 . G C 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:21:0,21:1:49,32,0 chr1 247330821 . C A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:47:1,46:0.978723:55,39,0 chr1 247330860 . G A 63.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:30:0,30:1:63,52,0 chr1 247331106 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:43:0,43:1:54,39,0 chr1 247332083 . T C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:8:0,8:1:43,20,0 chr1 247332298 . AC A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:5,30:0.857143:56,40,0 chr1 247424175 . G A 63.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:55:0,55:1:63,46,0 chr1 247424229 . A G 66.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:69:0,69:1:66,48,0 chr1 247424838 . C T 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:76:41,35:0.460526:41,0,49 chr1 247434063 . G A 27.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:23:0,23:1:27,29,0 chr1 247435930 . G A 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:119:0,119:1:62,49,0 chr1 247444865 . C A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:20:12,8:0.4:45,0,53 chr1 247451315 . C T 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:61:35,26:0.42623:42,0,43 chr1 247451391 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:69:0,69:1:54,47,0 chr1 247451594 . A C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:89:43,46:0.516854:55,0,51 chr1 247451950 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:44:22,22:0.5:42,0,51 chr1 247451959 . GA G 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:42:19,23:0.547619:36,0,47 chr1 247491691 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:141:57,83:0.588652:52,0,44 chr1 247491973 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:100:51,49:0.49:54,0,63 chr1 247532125 . C G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:39,29:0.426471:47,0,57 chr1 247532310 . G A 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:91:0,91:1:62,48,0 chr1 247532454 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:61:0,61:1:55,46,0 chr1 247588717 . G C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:101:0,101:1:57,42,0 chr1 247588807 . A G 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:85:57,27:0.317647:38,0,38 chr1 247588859 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:67:37,30:0.447761:52,0,61 chr1 247589065 . A G 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:64:29,35:0.546875:55,0,49 chr1 247589348 . AT A 22.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:6:3,3:0.5:22,0,41 chr1 247606450 . A G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:13:0,13:1:45,23,0 chr1 247672372 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:44:0,44:1:55,46,0 chr1 247672606 . T A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:93:0,93:1:61,49,0 chr1 247672706 . G A 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:59:0,59:1:60,45,0 chr1 247672905 . T A 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:42:0,42:1:50,33,0 chr1 247712113 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:118:72,46:0.38983:44,0,54 chr1 247712306 . C G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:99:43,56:0.565657:51,0,49 chr1 247723203 . G T 19.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:70:54,16:0.228571:19,0,43 chr1 247723313 . G A 29.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:90:59,31:0.344444:29,0,50 chr1 247739106 . G T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:98:49,49:0.5:44,0,51 chr1 247757798 . T G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:69:0,69:1:54,40,0 chr1 247758050 . C T 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:59:0,59:1:56,43,0 chr1 247758207 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:56:34,22:0.392857:53,0,54 chr1 247758415 . C A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:26:0,26:1:58,47,0 chr1 247775446 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:95:54,41:0.431579:49,0,52 chr1 247775603 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:69:33,36:0.521739:50,0,56 chr1 247775606 . T C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:77:1,76:0.987013:55,53,0 chr1 247775696 . A G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:79:49,30:0.379747:40,0,50 chr1 247814785 . G A 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:17:8,9:0.529412:53,0,61 chr1 247815017 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:48:0,48:1:58,45,0 chr1 247815239 . AAGG A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:48:25,23:0.479167:54,0,62 chr1 247815694 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:19:11,8:0.421053:49,0,55 chr1 247815759 . G A 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:14:6,8:0.571429:42,0,49 chr1 247840994 . A G 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:16:11,5:0.3125:36,0,54 chr1 247841312 . G A 61.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:59:28,31:0.525424:61,0,60 chr1 247841385 . C G 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:52:30,22:0.423077:57,0,61 chr1 247841473 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:66:33,33:0.5:55,0,56 chr1 247841546 . G C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:44:26,18:0.409091:57,0,76 chr1 247841575 . C T 59 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:68:45,23:0.338235:59,0,72 chr1 247841582 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:77:49,28:0.363636:52,0,62 chr1 247841911 . G C 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:21:14,7:0.333333:43,0,56 chr1 247857224 . C A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:17,11:0.392857:42,0,51 chr1 247857254 . G C 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:46:0,46:1:59,56,0 chr1 247860664 . C T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:73:42,31:0.424658:45,0,56 chr1 247876411 . A G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:74:44,30:0.405405:41,0,54 chr1 247895543 . A C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:0,25:1:57,38,0 chr1 247895577 . A T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:35:0,35:1:47,35,0 chr1 247921132 . G A 26.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:33:20,13:0.393939:25,0,11 chr1 247921162 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:24:0,24:1:47,46,0 chr1 247921168 . C CG 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:22:12,8:0.363636:31,0,39 chr1 247921169 . A G 32.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:27:1,20:0.740741:32,28,0 chr1 247921171 . C A 8.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:28:16,12:0.428571:6,0,4 chr1 247921307 . C T 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:11:0,11:1:41,25,0 chr1 247921323 . C G 41.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:9:1,8:0.888889:41,33,0 chr1 247921325 . C T 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:9:1,8:0.888889:36,25,0 chr1 247921329 . A C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:10:0,10:1:44,25,0 chr1 247921445 . A C 36.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:19:9,10:0.526316:36,28,0 chr1 247921447 . C A 25.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:25:0,16:0.64:25,13,0 chr1 247921552 . A G 23 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:59:51,8:0.135593:22,23,0 chr1 247921607 . T G 32.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:46:35,11:0.23913:32,18,0 chr1 247921678 . G T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:29:8,21:0.724138:53,36,0 chr1 247921806 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:28:0,27:0.964286:52,33,0 chr1 247949443 . G T 16 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:48:17,31:0.645833:14,4,0 chr1 247949460 . T C 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:23:7,16:0.695652:31,0,12 chr1 247949461 . G A 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:21:7,13:0.619048:35,0,26 chr1 247949469 . C T 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:21:7,14:0.666667:35,0,14 chr1 247949507 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:22:1,21:0.954545:36,17,0 chr1 247949534 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:26:0,26:1:54,41,0 chr1 247949613 . A G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:39:1,38:0.974359:44,37,0 chr1 247949724 . T A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:15:0,15:1:42,25,0 chr1 247949738 . A G 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:14:0,14:1:41,29,0 chr1 247949819 . C A 32.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:7:0,7:1:32,17,0 chr1 247965627 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:43:0,43:1:52,41,0 chr1 248039042 . G C 7.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:59:45,14:0.237288:6,0,37 chr1 248060797 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:32:18,14:0.4375:56,0,68 chr1 248060914 . C T 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:47:29,18:0.382979:35,0,48 chr1 248060992 . C T 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:56:35,21:0.375:35,0,62 chr1 248061096 . A G 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:43:19,24:0.55814:39,0,52 chr1 248061452 . T C 21.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:79:55,24:0.303797:21,0,45 chr1 248145736 . A G 24 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:26:20,6:0.230769:23,0,52 chr1 248145742 . C A 18.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:28:23,5:0.178571:18,0,52 chr1 248145774 . T C 5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:30:22,8:0.266667:3,0,49 chr1 248145793 . G A 16.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:37:26,11:0.297297:16,0,50 chr1 248180241 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:65:40,25:0.384615:47,0,52 chr1 248180643 . C G 24.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:40:31,9:0.225:24,0,60 chr1 248180688 . T C 28.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:60:41,19:0.316667:28,0,64 chr1 248203490 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:23,22:0.488889:49,0,54 chr1 248239456 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:103:67,36:0.349515:50,0,50 chr1 248273309 . G A 33.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:170:123,47:0.276471:33,0,48 chr1 248273314 . A G 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:174:109,65:0.373563:35,0,45 chr1 248273503 . T G 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:289:133,156:0.539792:2,0,14 chr1 248273670 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:104:0,104:1:48,39,0 chr1 248294677 . C A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:74:41,33:0.445946:39,0,49 chr1 248295374 . T C 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:92:62,30:0.326087:37,0,48 chr1 248295387 . A G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:80:55,25:0.3125:42,0,53 chr1 248295416 . T C 17.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:83:51,32:0.385542:17,0,59 chr1 248323593 . G T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:21:8,12:0.571429:51,0,64 chr1 248323611 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:23:9,14:0.608696:57,0,57 chr1 248324036 . C A 34.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:65:34,31:0.476923:34,0,54 chr1 248324336 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:32,27:0.457627:47,0,60 chr1 248324466 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:80:49,31:0.3875:49,0,54 chr1 248348762 . T G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:41:25,16:0.390244:54,0,67 chr1 248348792 . C T 63.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:66:39,27:0.409091:63,0,68 chr1 248349335 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:89:47,42:0.47191:49,0,48 chr1 248349447 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:114:63,51:0.447368:56,0,63 chr1 248349465 . G T 62.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:115:61,54:0.469565:62,0,63 chr1 248349721 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:22:13,8:0.363636:41,0,50 chr1 248407139 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:45:24,21:0.466667:45,0,52 chr1 248441151 . A G 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:8:4,4:0.5:36,0,39 chr1 248441153 . CAT C 13 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:8:4,4:0.5:12,0,38 chr1 248441164 . C T 34.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:8:0,8:1:34,31,0 chr1 248441241 . C T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:13:0,13:1:46,42,0 chr1 248441258 . T TTC 42.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:14:2,10:0.714286:42,36,0 chr1 248441313 . A T 39 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:55:0,55:1:38,37,0 chr1 248441464 . T A 34.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:112:0,111:0.991071:34,30,0 chr1 248441642 . G A 25.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:158:91,66:0.417722:25,0,32 chr1 248441670 . T C 26.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:117:68,49:0.418803:26,0,40 chr1 248453100 . G A 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:192:152,40:0.208333:34,0,31 chr1 248453107 . C T 26.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:205:164,40:0.195122:26,0,9 chr1 248488626 . A G 30.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:19:0,19:1:30,33,0 chr1 248521952 . T C 66.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:84:0,84:1:66,53,0 chr1 248522198 . C T 31.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:72:53,19:0.263889:31,0,49 chr1 248522418 . A T 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:70:51,19:0.271429:29,0,51 chr1 248559370 . T A 6.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:35:18,17:0.485714:5,0,22 chr1 248559421 . T C 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:46:30,16:0.347826:7,0,36 chr1 248559476 . T A 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:68:46,22:0.323529:30,0,39 chr1 248573958 . C G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:61:0,61:1:45,38,0 chr1 248574210 . A G 18.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:182:143,39:0.214286:18,0,45 chr1 248574350 . A G 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:82:43,39:0.47561:37,0,51 chr1 248626153 . G C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:31,23:0.425926:47,0,57 chr1 248626203 . T C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:103:61,42:0.407767:45,0,58 chr1 248626774 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:136:77,59:0.433824:49,0,56 chr1 248638477 . A T 24.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:45:25,20:0.444444:24,17,0 chr1 248638643 . TCAGCACG T 11.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:163:101,62:0.380368:11,0,21 chr1 248649991 . T C 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:63:32,31:0.492063:40,0,57 chr1 248650246 . G C 24.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:18:0,18:1:24,32,0 chr1 248650526 . T C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:19:0,19:1:55,30,0 chr1 248650600 . A T 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:19:0,19:1:47,35,0 chr1 248650751 . T A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:89:0,89:1:44,47,0 chr1 248650779 . A C 43 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:94:0,94:1:42,44,0 chr1 248650825 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:161:0,161:1:53,56,0 chr1 248681796 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:56:0,56:1:58,42,0 chr1 248682110 . G A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:52:0,52:1:54,36,0 chr1 248682157 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:45:0,44:0.977778:59,45,0 chr1 248682170 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:45:0,45:1:60,43,0 chr1 248682198 . A G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:55:0,55:1:46,33,0 chr1 248745207 . T C 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:50:0,50:1:59,42,0 chr1 248816707 . G C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:31:0,30:0.967742:55,41,0 chr2 45895 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:67:0,67:1:57,41,0 chr2 224970 . C T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:13:7,6:0.461538:43,0,40 chr2 234130 . T G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:40:27,13:0.325:41,0,58 chr2 242800 . T C 33.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:32:25,7:0.21875:33,0,53 chr2 243504 . C T 21.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:47:38,9:0.191489:21,0,52 chr2 495832 . A G 5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:88:71,16:0.181818:3,0,25 chr2 777159 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:37:0,37:1:59,45,0 chr2 777255 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:64:0,64:1:56,48,0 chr2 777293 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:67:37,30:0.447761:51,0,55 chr2 778672 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:57:31,26:0.45614:52,0,58 chr2 1083634 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:105:51,54:0.514286:52,0,52 chr2 1173070 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:60:0,60:1:55,41,0 chr2 1237851 . G A 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:51:24,26:0.509804:59,0,60 chr2 1242849 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:11,10:0.47619:48,0,48 chr2 1413427 . G A 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:17:8,9:0.529412:53,0,57 chr2 1413472 . A G 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:44:0,44:1:61,53,0 chr2 1414420 . C G 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:174:96,78:0.448276:38,0,47 chr2 1423015 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:188:104,83:0.441489:50,0,52 chr2 1433391 . A C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:54:34,20:0.37037:41,0,56 chr2 1433638 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:135:79,56:0.414815:47,0,55 chr2 1436527 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:16,18:0.529412:52,0,58 chr2 1438645 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:22:11,11:0.5:51,0,60 chr2 1438704 . T C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:45:28,17:0.377778:53,0,64 chr2 1438779 . ATTTT A 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:94:45,26:0.276596:42,0,65 chr2 1453592 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:57:0,57:1:56,46,0 chr2 1456034 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:73:0,73:1:56,43,0 chr2 1456232 . G T 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:208:116,92:0.442308:41,0,44 chr2 1456368 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:68:42,26:0.382353:50,0,55 chr2 1456448 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:45:17,28:0.622222:55,0,55 chr2 1477459 . G C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:200:98,102:0.51:54,0,48 chr2 1477722 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:61:30,31:0.508197:48,0,59 chr2 1484896 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:78:0,78:1:59,47,0 chr2 1487725 . T C 64.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:58:0,58:1:64,47,0 chr2 1487738 . CA C 16.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:61:20,27:0.442623:16,0,50 chr2 1493670 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:0,49:1:52,40,0 chr2 1494031 . C T 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:136:1,134:0.985294:59,46,0 chr2 1495956 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:161:84,77:0.478261:56,0,58 chr2 1496127 . C T 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:131:0,130:0.992366:60,41,0 chr2 1496155 . A C 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:115:0,115:1:63,50,0 chr2 1496685 . G A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:220:148,72:0.327273:40,0,56 chr2 1496893 . C T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:43:0,43:1:55,39,0 chr2 1516904 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:173:1,172:0.99422:53,38,0 chr2 1536820 . CCCA C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:38:9,29:0.763158:50,32,0 chr2 1536949 . T C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:9:0,9:1:43,22,0 chr2 1537004 . C G 25 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:2:0,2:1:22,1,0 chr2 1537062 . CT C 4.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:2:0,2:1:1,14,0 chr2 1537075 . C T 5.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:6:4,2:0.333333:4,0,34 chr2 1537121 . C A 35.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:11:0,11:1:35,28,0 chr2 1537165 . CCCT C 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:15:9,6:0.4:39,0,56 chr2 1537474 . AT A 24.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:10:1,6:0.6:24,23,0 chr2 1537477 . CTT C 6.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:6:0,6:1:4,15,0 chr2 1537481 . CA C 4.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:8:6,2:0.25:1,0,17 chr2 1537483 . C A 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:8:2,6:0.75:1,0,12 chr2 1537485 . C G 17.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:9:1,6:0.666667:16,0,7 chr2 1537503 . TCCC T 18.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:8:6,2:0.25:17,5,0 chr2 1537714 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:32:0,32:1:45,31,0 chr2 1537839 . TCCCCCCACTGTGTGCAATCTCAAATC T 11.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:9:0,8:0.888889:9,7,0 chr2 1540375 . A T 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:16:0,16:1:59,37,0 chr2 1540424 . A AAAT 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:26:0,26:1:52,47,0 chr2 1540845 . G A 67.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:180:0,180:1:67,49,0 chr2 1643399 . T C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:113:0,113:1:55,43,0 chr2 1648888 . G A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:143:95,47:0.328671:42,0,51 chr2 1649050 . T G 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:106:0,106:1:62,50,0 chr2 1660882 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:63:0,63:1:53,39,0 chr2 1816268 . GC G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:76:48,28:0.368421:50,0,60 chr2 1816510 . C T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:19,24:0.55814:53,0,46 chr2 1835192 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:26,26:0.5:49,0,59 chr2 1839196 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:35,36:0.507042:52,0,55 chr2 1840880 . C T 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:42:25,17:0.404762:27,0,49 chr2 1889361 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:167:72,95:0.568862:58,0,58 chr2 1911977 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:37:21,16:0.432432:53,0,59 chr2 1922665 . G T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:93:0,92:0.989247:55,39,0 chr2 1942998 . TTCCTCC T 35.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:39:29,9:0.230769:35,0,61 chr2 1943142 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:68:0,67:0.985294:57,44,0 chr2 1972355 . G GA 24.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:9:4,5:0.555556:24,0,47 chr2 1974178 . T A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:79:41,38:0.481013:47,0,57 chr2 1979602 . A C 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:77:53,24:0.311688:32,0,37 chr2 3208933 . C A 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:57:32,25:0.438596:38,0,56 chr2 3214137 . G C 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:38:0,38:1:54,37,0 chr2 3356581 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:45:0,44:0.977778:51,45,0 chr2 3356635 . G C 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:95:64,31:0.326316:28,0,46 chr2 3379767 . C A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/0:35:80:0,45:0.5625:55,38,55 chr2 3379767 . C G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:80:0,35:0.4375:55,38,57 chr2 3379891 . C T 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:26:15,11:0.423077:38,0,50 chr2 3388055 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:121:69,50:0.413223:47,0,53 chr2 3388304 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:124:54,70:0.564516:55,0,54 chr2 3388524 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:116:66,50:0.431034:43,0,52 chr2 3389966 . G C 5.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:149:106,40:0.268456:4,0,42 chr2 3500916 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:171:98,72:0.421053:48,0,53 chr2 3514872 . T C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:12,7:0.368421:49,0,59 chr2 3550384 . T C 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:107:67,40:0.373832:42,0,57 chr2 3552110 . G T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:13,11:0.458333:50,0,56 chr2 3606254 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:111:0,111:1:51,43,0 chr2 3613266 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:43:16,27:0.627907:55,0,51 chr2 3637484 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:37:12,25:0.675676:56,0,57 chr2 3752793 . C T 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:46:30,16:0.347826:41,0,65 chr2 3752906 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:22:10,12:0.545455:50,0,58 chr2 3778797 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:31:15,16:0.516129:58,0,68 chr2 3792955 . T G 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:58:29,19:0.327586:36,0,52 chr2 4022761 . C A 13.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:47:39,8:0.170213:12,0,40 chr2 4022816 . T G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:29:0,29:1:57,55,0 chr2 4024302 . T C 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:48:32,16:0.333333:37,0,58 chr2 4024670 . T C 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:92:56,36:0.391304:39,0,51 chr2 4024970 . T G 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:40:29,11:0.275:40,0,53 chr2 6865238 . A G 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:122:0,122:1:60,45,0 chr2 6865861 . C T 34.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:3:0,3:1:33,8,0 chr2 6877772 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:30:1,29:0.966667:52,41,0 chr2 6887192 . T A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:11:0,11:1:49,27,0 chr2 6996936 . A G 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:94:0,94:1:61,55,0 chr2 7024334 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:18:8,10:0.555556:56,0,51 chr2 7024352 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:14,9:0.391304:48,0,58 chr2 7024447 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:64:27,37:0.578125:52,0,55 chr2 7068193 . G T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:23,12:0.342857:47,0,58 chr2 7068291 . T C 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:31:20,11:0.354839:38,0,54 chr2 8730684 . A G 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:26:17,9:0.346154:35,0,44 chr2 8770857 . A T 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:14:0,14:1:43,29,0 chr2 8770880 . T C 26.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:10:7,3:0.3:26,0,41 chr2 8776717 . A T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:20:11,9:0.45:44,0,51 chr2 8803161 . G A 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:49:0,49:1:60,49,0 chr2 9279282 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:60:31,29:0.483333:48,0,54 chr2 9335208 . A G 22 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:69:33,36:0.521739:22,0,44 chr2 9350888 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:52:0,52:1:59,49,0 chr2 9356162 . T C 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:55:0,55:1:60,47,0 chr2 9380745 . C T 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:40,24:0.375:42,0,51 chr2 9388407 . G C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:114:0,114:1:53,44,0 chr2 9393645 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:76:27,48:0.631579:57,0,49 chr2 9400720 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:44:22,22:0.5:51,0,54 chr2 9424405 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:91:52,39:0.428571:51,0,56 chr2 9424694 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:44,40:0.47619:50,0,49 chr2 9424994 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:30:0,30:1:55,49,0 chr2 9426672 . C G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:55:24,31:0.563636:49,0,57 chr2 9430925 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:20:0,20:1:53,42,0 chr2 9443693 . A AG 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:17,21:0.552632:49,0,61 chr2 9448209 . T C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:54:28,26:0.481481:56,0,60 chr2 9455640 . C A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:26:11,15:0.576923:54,0,55 chr2 9474538 . G GGCCCC 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:15:0,14:0.933333:43,17,0 chr2 9484424 . T G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:50:23,27:0.54:53,0,50 chr2 9484575 . C CG 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:31:8,23:0.741935:48,0,43 chr2 9493008 . T G 25.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:68:52,16:0.235294:25,0,46 chr2 9494727 . A G 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:133:82,51:0.383459:39,0,53 chr2 9494813 . G A 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:71:46,25:0.352113:40,0,58 chr2 9527801 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:51:24,27:0.529412:56,0,55 chr2 9843575 . A G 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:26:0,25:0.961538:55,47,0 chr2 9843587 . A C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:24:0,24:1:48,43,0 chr2 9844469 . G A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:58:0,58:1:58,44,0 chr2 9854443 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:15,11:0.423077:50,0,59 chr2 9868314 . T C 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:39:25,14:0.358974:40,0,52 chr2 9904885 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:20:5,15:0.75:56,0,53 chr2 9904895 . G A 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:23:0,23:1:56,56,0 chr2 9904926 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:29:21,8:0.275862:50,0,62 chr2 9905018 . A G 42.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:10:0,10:1:42,25,0 chr2 9910818 . T C 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:50:43,7:0.14:39,0,57 chr2 9910924 . G C 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:26:17,9:0.346154:36,0,52 chr2 9913283 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:36:15,21:0.583333:53,0,57 chr2 9919083 . C T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:31:21,10:0.322581:39,0,55 chr2 9919641 . G T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:69:41,28:0.405797:47,0,54 chr2 9955056 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:101:52,49:0.485149:52,0,55 chr2 9960999 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:25:10,15:0.6:47,0,50 chr2 9961339 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:95:36,58:0.610526:53,0,53 chr2 9964375 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:27:13,14:0.518519:47,0,54 chr2 9965406 . T C 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:29:17,11:0.37931:42,0,48 chr2 9986202 . G A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:73:0,73:1:60,49,0 chr2 9986288 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:45:0,45:1:52,44,0 chr2 10044232 . C CG 45.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:27:0,27:1:45,45,0 chr2 10048522 . A T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:104:0,103:0.990385:57,48,0 chr2 10122793 . T G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:81:42,39:0.481481:51,0,60 chr2 10210610 . C A 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:13,11:0.458333:43,0,53 chr2 10577680 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:40:25,15:0.375:47,0,56 chr2 10657925 . G C 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:16:10,6:0.375:40,0,62 chr2 10662937 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:51:22,29:0.568627:53,0,55 chr2 10663094 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:30:15,15:0.5:53,0,52 chr2 10668650 . C CAA 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:7:0,7:1:47,22,0 chr2 10673505 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:14:9,5:0.357143:50,0,62 chr2 10772593 . G A 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:66:45,21:0.318182:38,0,56 chr2 10774741 . A T 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:78:55,22:0.282051:36,0,48 chr2 10775099 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:28:10,18:0.642857:58,0,56 chr2 10782390 . A C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:10:5,5:0.5:49,0,49 chr2 10788651 . A C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:33:0,33:1:54,45,0 chr2 10788780 . T C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:70:0,70:1:58,48,0 chr2 10789007 . A G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:26:0,26:1:56,37,0 chr2 10789741 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:38:1,35:0.921053:52,42,0 chr2 10789924 . A T 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:22:0,22:1:56,33,0 chr2 10790672 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:15,15:0.5:49,0,64 chr2 10790875 . A G 67.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:61:0,61:1:67,48,0 chr2 10791956 . T C 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:37:0,37:1:61,50,0 chr2 10793123 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:56:0,55:0.982143:52,43,0 chr2 10802561 . C T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:47:0,47:1:56,41,0 chr2 10812664 . T C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:45,40,0 chr2 10820740 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:46:23,23:0.5:55,0,52 chr2 10820826 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:122:71,51:0.418033:49,0,61 chr2 10832190 . G C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:58:33,25:0.431034:54,0,61 chr2 10832257 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:160:94,66:0.4125:50,0,62 chr2 10832500 . A T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:28:0,27:0.964286:55,40,0 chr2 10837613 . T C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:58:35,23:0.396552:38,0,46 chr2 10912894 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:68:1,67:0.985294:49,36,0 chr2 11133332 . A AC 16.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:8:6,2:0.25:16,0,45 chr2 11133631 . C T 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:6:4,2:0.333333:22,0,50 chr2 11143899 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:28:7,21:0.75:55,0,48 chr2 11160606 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:164:87,77:0.469512:54,0,58 chr2 11160743 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:62:0,62:1:55,39,0 chr2 11172055 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:16,18:0.529412:52,0,56 chr2 11192282 . C A 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:81:48,33:0.407407:33,0,48 chr2 11201437 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:42:20,22:0.52381:53,0,59 chr2 11208238 . C CTAACT 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:4:2,2:0.5:34,0,44 chr2 11208483 . CAAAT C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:17:8,9:0.529412:54,0,62 chr2 11218994 . G T 31.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:13:10,3:0.230769:31,0,51 chr2 11234283 . A T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:40:28,12:0.3:44,0,59 chr2 11446557 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:76:37,39:0.513158:45,0,53 chr2 11449148 . G A 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:5:1,4:0.8:45,0,30 chr2 11449236 . C A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:12:0,12:1:50,30,0 chr2 11449303 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:50:0,50:1:54,40,0 chr2 11562535 . A C 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:68:48,20:0.294118:39,0,57 chr2 11566567 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:107:61,46:0.429907:52,0,49 chr2 11578465 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:16:0,16:1:49,39,0 chr2 11585782 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:73:44,29:0.39726:49,0,56 chr2 11587381 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:73:42,31:0.424658:51,0,61 chr2 11588970 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:16:7,9:0.5625:51,0,52 chr2 11596179 . G A 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:48:33,15:0.3125:36,0,60 chr2 11597965 . T C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:45:0,45:1:54,41,0 chr2 11598639 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:32:0,32:1:55,42,0 chr2 11612509 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:32:1,31:0.96875:48,35,0 chr2 11615317 . T G 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:33:0,33:1:53,38,0 chr2 11618365 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:15,22:0.594595:52,0,52 chr2 11634198 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:65:34,31:0.476923:44,0,60 chr2 11669969 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:18:0,18:1:54,32,0 chr2 11677686 . G C 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:115:70,45:0.391304:39,0,49 chr2 11710624 . G A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:39:0,39:1:60,47,0 chr2 11713862 . A T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:20,16:0.444444:48,0,61 chr2 11765510 . GT G 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:56:35,20:0.357143:38,0,69 chr2 11771503 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:103:52,51:0.495146:51,0,52 chr2 11782200 . GTCT G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:116:55,60:0.517241:55,0,65 chr2 11784824 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:70:38,32:0.457143:50,0,60 chr2 11792047 . G T 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:58:34,24:0.413793:41,0,49 chr2 11804620 . TG T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:25:11,14:0.56:46,0,54 chr2 11815196 . G C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:100:48,52:0.52:50,0,53 chr2 15178946 . TA T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:40:17,19:0.475:49,0,58 chr2 15234763 . A G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:13,15:0.535714:50,0,56 chr2 15238698 . G GAATT 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:41:0,40:0.97561:59,49,0 chr2 15287049 . C T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:28:16,12:0.428571:45,0,55 chr2 15308187 . A T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:27:11,15:0.555556:48,0,54 chr2 15327901 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:40:25,15:0.375:47,0,55 chr2 15353757 . A G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:10,11:0.52381:45,0,60 chr2 15379868 . G T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:55:0,55:1:55,43,0 chr2 15383183 . TA T 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:26:0,26:1:59,40,0 chr2 15452171 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:88:50,38:0.431818:45,0,54 chr2 15461163 . A AT 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:19:0,19:1:47,38,0 chr2 15461317 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:74:0,73:0.986486:54,44,0 chr2 15461377 . A G 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:26:15,11:0.423077:42,0,48 chr2 15467718 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:62:36,26:0.419355:53,0,58 chr2 15474280 . T C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:70:0,70:1:53,41,0 chr2 15475786 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:63:0,63:1:58,47,0 chr2 15475889 . C G 45.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:25:0,25:1:45,32,0 chr2 15475906 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:20:0,20:1:55,38,0 chr2 15478215 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:28:0,28:1:53,43,0 chr2 15534562 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:30,25:0.454545:52,0,47 chr2 15536562 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,24:0.96:56,41,0 chr2 15554040 . T TA 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:33:0,33:1:53,45,0 chr2 15597356 . C A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:16,12:0.428571:45,0,58 chr2 15607269 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:45:0,45:1:54,37,0 chr2 15613183 . A AT 26 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:15:7,7:0.466667:26,0,36 chr2 15618169 . T C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:17:10,7:0.411765:46,0,57 chr2 15628722 . AT A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:70:49,21:0.3:52,0,57 chr2 15628752 . G A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:49:15,34:0.693878:54,0,40 chr2 16553016 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:85:0,85:1:57,57,0 chr2 16562185 . A C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:15:0,15:1:51,33,0 chr2 16565629 . C G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:27:0,27:1:56,44,0 chr2 17515306 . C T 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:48:32,16:0.333333:36,0,55 chr2 17517411 . A G 26.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:24:19,5:0.208333:26,0,54 chr2 17592257 . G A 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:28:0,28:1:62,46,0 chr2 17655183 . C CT 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:40:18,22:0.55:46,0,51 chr2 17707190 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:14,8:0.363636:45,0,54 chr2 17717059 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:30:13,17:0.566667:52,0,53 chr2 17761508 . T A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:50:0,50:1:60,43,0 chr2 17772760 . G A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:22:0,22:1:54,36,0 chr2 17773154 . C G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:18:0,18:1:53,43,0 chr2 17781183 . A G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:39:27,12:0.307692:43,0,59 chr2 17781251 . C T 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:24:18,6:0.25:41,0,65 chr2 17781661 . A G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:46:31,15:0.326087:46,0,57 chr2 17816758 . A T 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:43:22,21:0.488372:59,0,61 chr2 17816828 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:40:22,18:0.45:52,0,58 chr2 17817064 . T C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:89:58,30:0.337079:46,0,45 chr2 17877883 . G T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:52:23,29:0.557692:51,0,51 chr2 17931206 . G A 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:94:0,94:1:62,56,0 chr2 17932241 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:65:0,65:1:57,41,0 chr2 17932356 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:49:0,49:1:57,38,0 chr2 18576235 . G C 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:60:42,18:0.3:35,0,51 chr2 18587584 . A G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:61:34,27:0.442623:42,0,46 chr2 19353461 . C A 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:82:45,36:0.439024:38,0,54 chr2 19931423 . C A 35.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:47:25,22:0.468085:35,0,42 chr2 19933460 . C T 12.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:76:61,15:0.197368:11,0,34 chr2 19978869 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:57:32,24:0.421053:47,0,53 chr2 19982449 . A AT 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:43:29,14:0.325581:40,0,61 chr2 19989328 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:127:75,52:0.409449:52,0,54 chr2 20204033 . A T 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:125:0,124:0.992:55,47,0 chr2 20307987 . G T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:49:28,21:0.428571:44,0,52 chr2 20478735 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:35:27,8:0.228571:43,0,52 chr2 20478809 . G A 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:97:74,23:0.237113:34,0,53 chr2 20480097 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:139:58,81:0.582734:51,0,50 chr2 20480099 . G A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:139:59,80:0.57554:51,0,58 chr2 20488758 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:76:35,41:0.539474:55,0,54 chr2 20501140 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:23:0,23:1:50,40,0 chr2 20501289 . C T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:113:56,57:0.504425:44,0,50 chr2 20553951 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:141:65,75:0.531915:45,0,49 chr2 20560391 . A G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:58:0,58:1:54,50,0 chr2 20619004 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:73:43,30:0.410959:51,0,54 chr2 20619080 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:116:54,62:0.534483:55,0,60 chr2 20623852 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:13,10:0.434783:48,0,54 chr2 20623964 . T C 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:77:0,77:1:60,48,0 chr2 20624056 . G T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:15,10:0.4:44,0,54 chr2 20624738 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:58:30,28:0.482759:51,0,55 chr2 20624898 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:62:34,28:0.451613:53,0,65 chr2 20638462 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:100:50,50:0.5:46,0,52 chr2 20638558 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:80:36,44:0.55:50,0,53 chr2 20645513 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:23,26:0.530612:47,0,56 chr2 20667572 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:56:32,24:0.428571:40,0,52 chr2 20670819 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:24:0,24:1:46,32,0 chr2 20671430 . A C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:22:0,22:1:57,43,0 chr2 20739948 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:23:0,23:1:51,39,0 chr2 21001971 . G A 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:71:31,40:0.56338:41,0,46 chr2 21002409 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:27:0,27:1:54,45,0 chr2 21004459 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:105:67,38:0.361905:44,0,55 chr2 21004511 . C G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:83:47,36:0.433735:53,0,63 chr2 21009931 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:62:0,62:1:58,43,0 chr2 21038062 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:102:49,53:0.519608:50,0,57 chr2 21137711 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:36:14,22:0.611111:53,0,63 chr2 23077951 . T C 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:26:17,9:0.346154:43,0,60 chr2 23090961 . G T 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:57:36,21:0.368421:42,0,44 chr2 23199000 . G A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:68:44,23:0.338235:43,0,58 chr2 23200199 . T TC 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:53:34,19:0.358491:44,0,51 chr2 23639317 . C G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:19:0,19:1:50,31,0 chr2 23642390 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:53:0,53:1:58,39,0 chr2 23691115 . T C 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:69:44,25:0.362319:33,0,55 chr2 23696299 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:40:18,22:0.55:54,0,53 chr2 23703363 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:69:30,39:0.565217:58,0,56 chr2 23798361 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:21:11,10:0.47619:54,0,63 chr2 23885687 . G A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:12:6,6:0.5:51,0,64 chr2 23888441 . T G 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:10:6,4:0.4:41,0,57 chr2 23926569 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:14,15:0.517241:46,0,47 chr2 23958289 . G T 16.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:14:11,3:0.214286:16,0,49 chr2 24016319 . T TCCTGGC 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:7:2,5:0.714286:41,0,40 chr2 24020059 . G A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:80:46,34:0.425:45,0,56 chr2 24022789 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:19,24:0.55814:48,0,53 chr2 24032992 . C G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:13:0,13:1:53,41,0 chr2 24053866 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:50:24,26:0.52:52,0,48 chr2 24119635 . T C 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:53:38,15:0.283019:35,0,51 chr2 24121190 . T G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:58:26,32:0.551724:56,0,52 chr2 24146804 . C T 10.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:49:42,7:0.142857:9,0,40 chr2 24161554 . T C 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:24:18,6:0.25:38,0,57 chr2 24177900 . A C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:31:15,16:0.516129:48,0,47 chr2 24190429 . A G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:20,18:0.473684:48,0,60 chr2 24208315 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:98:43,55:0.561224:49,0,47 chr2 24209269 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:14,11:0.44:48,0,54 chr2 24209798 . C G 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:40:25,15:0.375:37,0,58 chr2 24209970 . A G 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:37:25,12:0.324324:43,0,54 chr2 24210068 . C T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:21:11,10:0.47619:46,0,59 chr2 24252336 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:27:0,27:1:54,42,0 chr2 24261281 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:34:0,34:1:57,49,0 chr2 24284888 . ATTTTT A 16.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:12:0,2:0.166667:12,0,31 chr2 24284888 . ATTTT A 16.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:12:0,2:0.166667:12,2,29 chr2 24284888 . ATTT A 16.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:12:0,6:0.5:12,0,15 chr2 24298624 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,25:1:52,42,0 chr2 24302089 . C T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:46:0,46:1:58,47,0 chr2 24658797 . C A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:25:11,14:0.56:45,0,46 chr2 24683058 . G C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:51:0,51:1:53,36,0 chr2 24706982 . A T 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:40:28,12:0.3:34,0,51 chr2 24726733 . A C 60.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:21:9,12:0.571429:60,0,60 chr2 24752076 . T G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:71:0,71:1:59,41,0 chr2 24823221 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:135:0,135:1:53,41,0 chr2 24824539 . A G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:54,43,0 chr2 24828108 . T C 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:104:0,104:1:59,45,0 chr2 24836876 . T G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:15:8,7:0.466667:41,0,53 chr2 24838401 . GGGGTGGGGT G 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:40:23,17:0.425:36,0,62 chr2 24838446 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:101:49,52:0.514852:52,0,57 chr2 24841324 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:102:64,38:0.372549:45,0,51 chr2 24842235 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:40:25,14:0.35:44,0,54 chr2 24918669 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:129:61,68:0.527132:54,0,52 chr2 24967258 . G A 14.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:18:13,5:0.277778:13,0,47 chr2 24971872 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:62:27,35:0.564516:55,0,52 chr2 25137317 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:22,16:0.421053:47,0,59 chr2 25145136 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:47:25,22:0.468085:52,0,62 chr2 25154307 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:109:62,47:0.431193:55,0,57 chr2 25161587 . C CGCCGCTGCT 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:119:71,46:0.386555:58,0,66 chr2 25235677 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:50:22,28:0.56:56,0,57 chr2 25239458 . C G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:88:43,45:0.511364:52,0,48 chr2 25240614 . G A 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:33:22,11:0.333333:36,0,53 chr2 25244019 . G T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:50:1,49:0.98:60,43,0 chr2 25246633 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:24,27:0.529412:50,0,50 chr2 25247044 . C T 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:126:0,126:1:61,46,0 chr2 25379273 . G A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:93:50,43:0.462366:51,0,60 chr2 25434011 . C G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:13,17:0.566667:48,0,51 chr2 25434020 . G GT 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:30:12,13:0.433333:24,0,40 chr2 25577036 . A G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:19:10,9:0.473684:40,0,45 chr2 25767771 . T C 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:27:17,10:0.37037:37,0,51 chr2 25780199 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:17:9,8:0.470588:51,0,58 chr2 25951875 . C T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:33,21:0.388889:46,0,56 chr2 25954329 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:134:74,60:0.447761:47,0,56 chr2 25981771 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:79:48,31:0.392405:44,0,52 chr2 26098657 . T C 31.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:24:18,6:0.25:31,0,62 chr2 26127267 . G T 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:10:6,4:0.4:40,0,51 chr2 26176345 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:64:36,28:0.4375:47,0,58 chr2 26183116 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:33:15,18:0.545455:50,0,50 chr2 26185195 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:85:0,83:0.976471:57,43,0 chr2 26186256 . G C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:130:68,62:0.476923:49,0,43 chr2 26192219 . TA T 27.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:135:42,57:0.422222:27,0,42 chr2 26193432 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:51:30,21:0.411765:52,0,63 chr2 26194664 . C A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:142:85,57:0.401408:40,0,53 chr2 26197839 . T G 29.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:130:88,42:0.323077:29,0,45 chr2 26201139 . C T 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:75:50,25:0.333333:40,0,62 chr2 26232128 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:10,32:0.761905:57,0,51 chr2 26232134 . C G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:30,10:0.25:42,0,63 chr2 26232259 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:74:38,36:0.486486:55,0,53 chr2 26234399 . T G 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:33:21,12:0.363636:36,0,51 chr2 26238865 . C G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:17,14:0.451613:48,0,55 chr2 26244479 . C A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:106:52,54:0.509434:54,0,54 chr2 26254109 . A G 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:9:0,9:1:42,20,0 chr2 26254257 . G GACT 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:28:0,21:0.75:56,38,0 chr2 26261212 . A ACC 17.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:13:8,4:0.307692:14,0,0 chr2 26279085 . C A 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:41:22,19:0.463415:38,0,52 chr2 26279900 . C T 26.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:10:7,3:0.3:26,0,49 chr2 26280007 . T C 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:63:45,18:0.285714:34,0,51 chr2 26282990 . A G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:56:40,16:0.285714:40,0,56 chr2 26284856 . T C 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:59:38,21:0.355932:39,0,43 chr2 26289865 . T G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:82:54,28:0.341463:44,0,57 chr2 26309623 . G T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:51:27,24:0.470588:49,0,60 chr2 26310155 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:68:36,32:0.470588:50,0,60 chr2 26311933 . G A 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:102:59,43:0.421569:39,0,53 chr2 26313431 . C G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:36,21:0.368421:45,0,57 chr2 26313826 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:54,50:0.480769:51,0,51 chr2 26314631 . A C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:62:0,62:1:50,40,0 chr2 26367216 . T G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:17,21:0.552632:50,0,64 chr2 26367250 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:17:9,8:0.470588:53,0,64 chr2 26385124 . T C 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:28:0,28:1:60,46,0 chr2 26402174 . C A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:78:35,43:0.551282:53,0,53 chr2 26424409 . T G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:124:0,123:0.991935:57,43,0 chr2 26429803 . A G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:28:0,28:1:41,37,0 chr2 26444262 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:165:87,78:0.472727:50,0,57 chr2 26444747 . T C 63 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:53:0,53:1:63,50,0 chr2 26448676 . A G 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:54:0,54:1:63,51,0 chr2 26476258 . C G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:86:43,42:0.488372:51,0,55 chr2 26477505 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:80:38,42:0.525:49,0,51 chr2 26477625 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:98:45,53:0.540816:57,0,58 chr2 26479214 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:91:47,44:0.483516:55,0,55 chr2 26501857 . T G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:24:13,11:0.458333:47,0,60 chr2 26516379 . T A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:37:17,19:0.513514:52,0,53 chr2 26519125 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:75:31,44:0.586667:52,0,44 chr2 26537688 . A C 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:56:39,17:0.303571:39,0,48 chr2 26574051 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:69:44,25:0.362319:45,0,56 chr2 26574768 . C T 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:220:130,90:0.409091:36,0,50 chr2 26576025 . A T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:170:95,75:0.441176:51,0,48 chr2 26576163 . G A 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:39:26,13:0.333333:39,0,50 chr2 26581350 . G A 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:98:0,98:1:61,53,0 chr2 26581379 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:113:63,50:0.442478:57,0,58 chr2 26595138 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:24:11,13:0.541667:57,0,65 chr2 26595153 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:32:17,15:0.46875:57,0,69 chr2 26612107 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:11:4,7:0.636364:53,0,53 chr2 26612131 . TG T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:21:10,11:0.52381:49,0,54 chr2 26728581 . G A 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:59:0,59:1:58,42,0 chr2 26927235 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:47:21,26:0.553191:53,0,58 chr2 26927479 . CAGTT C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:20,14:0.411765:50,0,70 chr2 26931699 . G C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:73:40,33:0.452055:43,0,49 chr2 26934532 . A G 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:28:0,28:1:59,45,0 chr2 26934742 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:55:26,29:0.527273:52,0,54 chr2 26940176 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:68:0,68:1:55,47,0 chr2 26941938 . G A 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:79:0,79:1:60,51,0 chr2 26946974 . C A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:59:29,30:0.508475:46,0,53 chr2 27023417 . C T 65.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:101:0,101:1:65,46,0 chr2 27026377 . A G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:67:30,37:0.552239:45,0,46 chr2 27037601 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:123:67,56:0.455285:53,0,54 chr2 27038461 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:62:0,62:1:58,43,0 chr2 27057259 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:25:17,8:0.32:41,0,65 chr2 27059361 . T A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:57:23,34:0.596491:54,0,52 chr2 27067657 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:125:66,59:0.472:44,0,44 chr2 27068793 . G A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:24:9,15:0.625:54,0,57 chr2 27070173 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:42,26:0.382353:50,0,49 chr2 27070282 . G T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:30:17,13:0.433333:45,0,47 chr2 27092384 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:123:74,48:0.390244:50,0,58 chr2 27094472 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:94:51,43:0.457447:52,0,57 chr2 27097667 . CCT C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:123:78,45:0.365854:46,0,59 chr2 27100556 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:13,10:0.434783:49,0,58 chr2 27101385 . GGCCTCTGCCTGGCCCCCAGCTTCCCCTCTGGGCCCGGGGGCATCTCCTTCA G 17.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:106:0,104:0.981132:17,24,0 chr2 27101856 . G C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:56:27,29:0.517857:47,0,59 chr2 27101883 . G T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:48:22,26:0.541667:55,0,58 chr2 27128411 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:38:20,18:0.473684:47,0,50 chr2 27130639 . G C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:98:55,43:0.438776:49,0,58 chr2 27131504 . A G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:71:38,33:0.464789:49,0,57 chr2 27132103 . C T 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:27,13:0.325:42,0,54 chr2 27132586 . A C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:25:0,25:1:48,40,0 chr2 27133123 . G T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:64:40,24:0.375:46,0,55 chr2 27138378 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:25:1,23:0.92:50,34,0 chr2 27201628 . G A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:29:11,18:0.62069:59,0,59 chr2 27205427 . A G 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:187:0,187:1:62,44,0 chr2 27206009 . C G 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:64:34,30:0.46875:34,0,49 chr2 27212382 . A G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:53:0,53:1:57,45,0 chr2 27222447 . G GT 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:105:50,55:0.52381:43,0,56 chr2 27223430 . CA C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:121:27,71:0.586777:53,33,0 chr2 27224293 . C A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:126:58,67:0.531746:50,0,50 chr2 27226425 . C G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:61:0,61:1:47,38,0 chr2 27238100 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:204:1,203:0.995098:59,50,0 chr2 27239208 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:125:61,64:0.512:53,0,55 chr2 27239537 . T A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:114:0,114:1:54,40,0 chr2 27255363 . A G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:135:72,62:0.459259:48,0,54 chr2 27258784 . A C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:28,25:0.471698:49,0,47 chr2 27262946 . A G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:23:10,13:0.565217:54,0,52 chr2 27264026 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:79:48,31:0.392405:47,0,52 chr2 27277792 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:85:49,36:0.423529:53,0,59 chr2 27278175 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:64:34,30:0.46875:48,0,58 chr2 27282914 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:64:27,37:0.578125:51,0,47 chr2 27299675 . C CCTAT 41.9 PASS . GT:GQ:DP:AD:VAF:PL 1/0:9:24:3,19:0.791667:41,18,8 chr2 27299675 . C CCTATCTAT 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:24:3,2:0.0833333:41,18,33 chr2 27305824 . T C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:45:0,45:1:55,41,0 chr2 27310002 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:18,20:0.526316:50,0,53 chr2 27322557 . C A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:63:29,34:0.539683:47,0,56 chr2 27328100 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:66:0,66:1:53,38,0 chr2 27328458 . G A 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:41:28,13:0.317073:37,0,55 chr2 27356364 . T C 59.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:14:5,9:0.642857:59,0,60 chr2 27356377 . T C 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:12:8,4:0.333333:37,0,60 chr2 27366943 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:22,17:0.435897:49,0,52 chr2 27369556 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:120:61,58:0.483333:45,0,48 chr2 27374471 . C A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:45:23,22:0.488889:43,0,53 chr2 27376265 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:46:16,30:0.652174:55,0,54 chr2 27433955 . G GA 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:27:0,27:1:49,35,0 chr2 27440549 . G T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:13,22:0.628571:50,0,50 chr2 27444430 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:45,30:0.4:48,0,59 chr2 27453420 . A T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:112:49,63:0.5625:58,0,55 chr2 27458731 . A C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:21:9,12:0.571429:52,0,48 chr2 27461867 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:87:49,38:0.436782:49,0,59 chr2 27465734 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:32,39:0.549296:53,0,54 chr2 27497518 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:39:24,14:0.358974:46,0,55 chr2 27499104 . T C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:14:9,5:0.357143:43,0,58 chr2 27506613 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:62:33,29:0.467742:47,0,55 chr2 27508073 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:1,55:0.948276:55,44,0 chr2 27537451 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:47:26,21:0.446809:52,0,60 chr2 27567336 . C A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:109:56,53:0.486239:50,0,50 chr2 27568389 . G T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:88:49,39:0.443182:45,0,58 chr2 27571054 . G T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:93:41,52:0.55914:52,0,56 chr2 27571283 . C G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:96:51,45:0.46875:46,0,62 chr2 27571366 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:33,20:0.37037:50,0,52 chr2 27573659 . C T 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:120:83,37:0.308333:39,0,55 chr2 27578536 . C G 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:59:48,11:0.186441:31,0,54 chr2 27578551 . C A 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:59:46,13:0.220339:37,0,59 chr2 27578626 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:28,18:0.391304:50,0,59 chr2 27581565 . T C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:78:44,34:0.435897:43,0,53 chr2 27615191 . C A 19.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:16:12,4:0.25:19,0,46 chr2 27616240 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:48:24,24:0.5:51,0,52 chr2 27628593 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:128:64,64:0.5:47,0,53 chr2 27631109 . T G 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:27:11,16:0.592593:55,0,62 chr2 27635125 . T A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:53:30,23:0.433962:41,0,48 chr2 27635245 . G A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:43:29,14:0.325581:41,0,58 chr2 27664167 . C A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:26,18:0.409091:44,0,54 chr2 27716806 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:66:34,32:0.484848:47,0,56 chr2 28411923 . G A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:62:34,28:0.451613:44,0,50 chr2 28525990 . T C 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:67:0,67:1:61,50,0 chr2 28529688 . T C 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:47:0,47:1:62,44,0 chr2 28538390 . A G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:115:0,115:1:49,41,0 chr2 28538415 . A G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:63:0,63:1:49,33,0 chr2 28539114 . G C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:62:32,30:0.483871:47,0,47 chr2 28545483 . G A 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:133:81,52:0.390977:37,0,48 chr2 28566776 . T C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:95:0,95:1:56,39,0 chr2 28593958 . T TTTA 42 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:36:18,14:0.388889:38,0,56 chr2 28593958 . T TTTC 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:36:18,3:0.0833333:38,0,56 chr2 28594081 . C T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:71:39,32:0.450704:43,0,49 chr2 28598746 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:47,30:0.38961:43,0,60 chr2 28598795 . C T 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:37:23,14:0.378378:35,0,62 chr2 28601926 . C G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:78:0,77:0.987179:57,48,0 chr2 28604758 . C T 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:88:45,43:0.488636:40,0,51 chr2 28604777 . A G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:29,21:0.42:45,0,58 chr2 28614023 . T TTC 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:39:23,14:0.358974:34,0,58 chr2 28621004 . G C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:56:30,26:0.464286:52,0,49 chr2 28632091 . C T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:179:108,71:0.396648:44,0,42 chr2 28633329 . A G 61.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:101:51,50:0.49505:61,0,62 chr2 28633361 . G A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:159:93,64:0.402516:58,0,58 chr2 28633443 . A G 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:151:101,50:0.331126:43,0,54 chr2 28633516 . A G 64.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:62:29:12,17:0.586207:64,0,66 chr2 28642894 . T C 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:80:0,80:1:60,41,0 chr2 28643102 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:32:0,32:1:56,40,0 chr2 28643111 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:26:0,26:1:55,44,0 chr2 28778825 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:43:0,43:1:53,38,0 chr2 28819011 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:18:0,18:1:56,41,0 chr2 28822457 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:11:0,11:1:47,26,0 chr2 28912602 . C G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:59:0,59:1:55,39,0 chr2 28929590 . A G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:57:0,57:1:58,39,0 chr2 28946746 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:52:0,52:1:57,46,0 chr2 29002636 . T G 67.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:64:130:68,62:0.476923:67,0,66 chr2 29002638 . T C 62 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:130:68,62:0.476923:62,0,56 chr2 29003551 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:100:54,46:0.46:54,0,55 chr2 29003632 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:111:71,40:0.36036:53,0,62 chr2 29003646 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:114:0,114:1:52,53,0 chr2 29003693 . C T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:108:63,45:0.416667:56,0,68 chr2 29010028 . GGTGTGT G 37.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:13:84:1,62:0.738095:37,24,21 chr2 29010028 . GGTGT G 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:84:1,15:0.178571:37,24,13 chr2 29016379 . G A 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:145:75,70:0.482759:38,0,50 chr2 29017139 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:66:38,28:0.424242:46,0,53 chr2 29017917 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:116:62,52:0.448276:49,0,52 chr2 29023067 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:28:13,15:0.535714:43,0,52 chr2 29023178 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:17,17:0.5:50,0,51 chr2 29026804 . C G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:21:12,9:0.428571:45,0,55 chr2 29051854 . A G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:83:0,83:1:58,42,0 chr2 29065060 . C CGCT 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:74:26,41:0.554054:53,0,59 chr2 29133803 . A G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:18,19:0.513514:46,0,54 chr2 29143964 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:20,18:0.473684:52,0,52 chr2 29160390 . G T 30 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:47:34,13:0.276596:30,0,53 chr2 29160508 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:8:0,8:1:43,18,0 chr2 29167433 . AG A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:14:5,9:0.642857:54,0,58 chr2 29193706 . T C 63.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:115:0,115:1:63,50,0 chr2 29196725 . G T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:27:0,27:1:53,39,0 chr2 29223336 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:51:30,21:0.411765:52,0,52 chr2 29226953 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:112:54,58:0.517857:53,0,53 chr2 29232401 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:61:0,61:1:50,40,0 chr2 29320797 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:74:0,74:1:58,49,0 chr2 29920633 . G C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:70:0,69:0.985714:59,41,0 chr2 30158639 . T C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:92:0,92:1:55,41,0 chr2 30459604 . A T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:57:21,35:0.614035:50,0,43 chr2 30459764 . T A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:40:15,25:0.625:55,0,53 chr2 30569612 . G GTTC 40.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:6:0,6:1:40,14,0 chr2 30640114 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:14,8:0.363636:43,0,53 chr2 30640226 . C T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:91:52,37:0.406593:44,0,53 chr2 30640242 . A G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:102:54,48:0.470588:51,0,59 chr2 30753192 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:58:32,26:0.448276:46,0,57 chr2 30758074 . C T 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:78:54,24:0.307692:40,0,54 chr2 30764123 . G T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:44:0,44:1:60,38,0 chr2 30787111 . G C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:48,45,0 chr2 30911073 . G C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:59:32,27:0.457627:52,0,57 chr2 30912318 . G T 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:61:32,29:0.47541:42,0,47 chr2 31187842 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:28:0,28:1:51,31,0 chr2 31191941 . C G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:51:0,51:1:47,34,0 chr2 31193101 . T C 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:44:25,18:0.409091:42,0,55 chr2 31202019 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:40:18,22:0.55:47,0,48 chr2 31244485 . T A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:52,39,0 chr2 31344766 . T G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:24,24:0.5:45,0,53 chr2 31347510 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:52:0,52:1:53,40,0 chr2 31348375 . G C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:25:0,25:1:54,40,0 chr2 31348920 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:41:0,41:1:56,39,0 chr2 31349866 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:15,19:0.558824:52,0,56 chr2 31365422 . T A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:119:71,47:0.394958:42,0,57 chr2 31377280 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:29:9,20:0.689655:53,0,50 chr2 31398732 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:26:11,15:0.576923:56,0,63 chr2 31403179 . G C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:15,13:0.464286:51,0,54 chr2 31580605 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:48:0,48:1:54,42,0 chr2 31580636 . G C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:95:0,95:1:57,49,0 chr2 32224802 . AT A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:0,16:0.941176:41,35,0 chr2 32224808 . T A 36.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:17:1,16:0.941176:36,34,0 chr2 32224809 . T A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:17:0,17:1:40,37,0 chr2 32224810 . T A 38.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:17:0,17:1:38,38,0 chr2 32250040 . G A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:107:0,107:1:61,44,0 chr2 32251321 . T G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:81:0,81:1:57,43,0 chr2 32256726 . T A 38.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:11:0,11:1:38,22,0 chr2 32264782 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:57:0,57:1:54,34,0 chr2 32488639 . A T 34.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:4:0,4:1:33,7,0 chr2 32597890 . G A 64.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:86:0,86:1:64,50,0 chr2 32630548 . A G 33.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:6:0,6:1:33,15,0 chr2 32640367 . G A 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:65:47,18:0.276923:37,0,54 chr2 32733957 . T C 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:13:8,5:0.384615:42,0,53 chr2 32736678 . T A 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:39:0,39:1:62,46,0 chr2 32811257 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:52,31,0 chr2 32820800 . G GT 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:11:5,6:0.545455:45,0,54 chr2 33110780 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:21:9,12:0.571429:56,0,63 chr2 33187010 . G A 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:47:0,47:1:58,36,0 chr2 33188573 . G T 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:21:0,21:1:61,44,0 chr2 33188882 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:0,24:1:57,39,0 chr2 33222135 . C T 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:26:0,26:1:57,40,0 chr2 33263352 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:68:46,22:0.323529:39,0,46 chr2 33275781 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:23:14,9:0.391304:52,0,66 chr2 33301508 . T C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:34:18,16:0.470588:46,0,50 chr2 33315181 . G A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:108:57,51:0.472222:50,0,54 chr2 33360729 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:51:0,51:1:55,34,0 chr2 33398320 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:27:0,27:1:53,43,0 chr2 33398321 . T C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:27:0,27:1:45,41,0 chr2 33539219 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:53:24,29:0.54717:49,0,54 chr2 33559068 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:34:19,15:0.441176:50,0,61 chr2 36477001 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:166:93,73:0.439759:44,0,57 chr2 36512410 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:35:0,35:1:49,33,0 chr2 36555743 . G A 32.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:40:29,11:0.275:32,0,46 chr2 36583443 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:54:25,29:0.537037:58,0,54 chr2 36597994 . G A 67 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:112:0,112:1:66,48,0 chr2 36598027 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:96:1,95:0.989583:57,44,0 chr2 36598187 . C CG 30.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:4:2,2:0.5:29,6,0 chr2 36767296 . A C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:29:15,14:0.482759:51,0,60 chr2 36783431 . G A 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:42:0,42:1:62,47,0 chr2 36814337 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:63:36,27:0.428571:41,0,53 chr2 36850952 . A AT 21.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:9:1,6:0.666667:21,9,0 chr2 36867802 . A G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:16:0,16:1:52,36,0 chr2 36883902 . T A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:11,10:0.454545:50,0,56 chr2 37007337 . CTTT C 9.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:21:1,6:0.285714:9,0,27 chr2 37013907 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:64:21,43:0.671875:57,0,47 chr2 37020872 . T C 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:5:2,3:0.6:40,0,42 chr2 37065747 . T G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:32:0,32:1:56,42,0 chr2 37070186 . C G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:29:0,29:1:58,41,0 chr2 37079200 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:0,17:1:51,34,0 chr2 37090726 . C T 30.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:3:0,3:1:29,7,0 chr2 37146839 . A AT 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:24:0,24:1:48,39,0 chr2 37149171 . G C 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:68:44,24:0.352941:40,0,48 chr2 37157153 . A C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:88:1,87:0.988636:57,47,0 chr2 37179501 . A G 26 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:6:0,6:1:25,8,0 chr2 37179537 . C G 29 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:8:0,8:1:28,13,0 chr2 37201600 . C T 29.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:4:0,4:1:28,4,0 chr2 37220484 . C CA 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:11:5,6:0.545455:34,0,43 chr2 37228889 . C T 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:27:0,27:1:59,45,0 chr2 37231525 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:95:43,51:0.536842:54,0,47 chr2 37232065 . C T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:39:13,26:0.666667:55,0,54 chr2 37256628 . ATTTTTTT A 6.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:20:7,3:0.15:3,0,38 chr2 37256628 . A AT 6.7 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:20:7,2:0.1:3,3,43 chr2 37267448 . A G 28 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:34:27,7:0.205882:27,0,54 chr2 37277962 . T G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:60:30,30:0.5:47,0,51 chr2 37279796 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:31,20:0.392157:50,0,51 chr2 37289338 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:37:14,23:0.621622:54,0,59 chr2 37316228 . A G 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:57:0,57:1:61,46,0 chr2 37359538 . A G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:14,12:0.461538:45,0,58 chr2 37372820 . A C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:31:12,19:0.612903:56,0,59 chr2 37372845 . G T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:22:12,10:0.454545:54,0,63 chr2 37893858 . G T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:15:4,11:0.733333:52,0,46 chr2 37893859 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:15:4,11:0.733333:53,0,44 chr2 37951263 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:49:31,18:0.367347:46,0,57 chr2 37952271 . CTG C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:50:32,18:0.36:50,0,61 chr2 38071007 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:75:38,36:0.48:46,0,57 chr2 38071060 . G C 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:72:35,37:0.513889:55,0,61 chr2 38309484 . T G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:49:29,20:0.408163:52,0,61 chr2 38310484 . A C 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:12,7:0.368421:41,0,56 chr2 38377209 . A G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:101:57,44:0.435644:41,0,57 chr2 38689764 . T C 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:9:5,4:0.444444:34,0,45 chr2 38815497 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:25:0,25:1:53,36,0 chr2 38863554 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:31:0,31:1:48,30,0 chr2 38882417 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:19:8,11:0.578947:47,0,50 chr2 38937324 . C A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:39:13,26:0.666667:41,0,30 chr2 38960049 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:27:0,27:1:54,43,0 chr2 38960378 . A G 40.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:7:0,7:1:40,17,0 chr2 38971825 . A G 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:49:0,49:1:60,49,0 chr2 38997210 . G T 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:27:0,27:1:60,45,0 chr2 38997474 . G GT 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:28:0,28:1:41,30,0 chr2 39280276 . T A 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:31:0,31:1:52,41,0 chr2 39286995 . T C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:17:0,17:1:55,40,0 chr2 39299701 . A C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:14:0,14:1:44,32,0 chr2 39326130 . A G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:17:0,17:1:53,39,0 chr2 39337479 . C A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:18:0,18:1:52,41,0 chr2 39356305 . A G 36.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:7:0,7:1:36,15,0 chr2 39751222 . T G 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:73:0,73:1:61,46,0 chr2 39766027 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:24:10,14:0.583333:57,0,51 chr2 40428423 . CCACA C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:32:0,25:0.78125:44,29,0 chr2 42282878 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:24:0,24:1:49,39,0 chr2 42288248 . A G 12.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:3:0,3:1:10,3,0 chr2 42288297 . A G 7.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:2:0,2:1:4,3,0 chr2 42326070 . C A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:15:0,15:1:57,36,0 chr2 42328882 . A T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:24:0,24:1:54,46,0 chr2 42361055 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:29:0,29:1:52,40,0 chr2 42568785 . C T 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:26:19,7:0.269231:34,0,56 chr2 42568814 . T C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:11:0,11:1:42,31,0 chr2 42709165 . C CT 5.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:12:8,4:0.333333:4,0,23 chr2 42762870 . C A 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:25:14,11:0.44:56,0,56 chr2 42762961 . G C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:102:64,38:0.372549:43,0,53 chr2 42763196 . T G 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:77:47,29:0.376623:39,0,49 chr2 42763382 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:61:31,30:0.491803:46,0,50 chr2 42788564 . T A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:113:82,30:0.265487:43,0,60 chr2 42788579 . T C 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:117:86,31:0.264957:45,0,53 chr2 42788617 . G A 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:94:70,24:0.255319:38,0,47 chr2 43068079 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:275:128,147:0.534545:47,0,42 chr2 43068489 . A G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:98:51,47:0.479592:48,0,54 chr2 43225044 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:46:21,24:0.521739:47,0,49 chr2 43286897 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:33:17,16:0.484848:44,0,55 chr2 43397939 . T C 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:15:10,5:0.333333:38,0,61 chr2 43398045 . T A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:95:54,41:0.431579:45,0,52 chr2 43527853 . C T 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:10:6,4:0.4:38,0,58 chr2 43566586 . G A 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:30:21,9:0.3:39,0,60 chr2 43566824 . T TAA 6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:28:6,12:0.428571:4,0,15 chr2 43570480 . C T 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:33,20:0.377358:44,0,58 chr2 43573035 . A G 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:19:12,7:0.368421:35,0,54 chr2 43574573 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:53:24,29:0.54717:47,0,51 chr2 43577090 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:65:38,27:0.415385:48,0,51 chr2 43590811 . CT C 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:14:7,7:0.5:43,0,45 chr2 43644844 . T C 32.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:8:0,8:1:32,14,0 chr2 43675372 . G C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:57:0,57:1:58,48,0 chr2 43675927 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:50:0,50:1:47,32,0 chr2 43676123 . C A 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:54:36,18:0.333333:39,0,53 chr2 43676215 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:51:26,25:0.490196:52,0,51 chr2 43676344 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:22:0,22:1:47,36,0 chr2 43699804 . T A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:45:0,45:1:57,42,0 chr2 43700399 . C A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:63:43,20:0.31746:47,0,60 chr2 43700429 . C T 25 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:60:49,11:0.183333:24,0,58 chr2 43704037 . T C 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:46:34,12:0.26087:34,0,55 chr2 43710372 . A G 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:19:11,8:0.421053:43,0,58 chr2 43720621 . T C 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:25:17,8:0.32:38,0,54 chr2 43734613 . A G 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:85:55,30:0.352941:42,0,52 chr2 43738566 . T C 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:16:10,6:0.375:39,0,50 chr2 43764218 . A C 33.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:4:0,4:1:32,5,0 chr2 43776871 . T C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:40:23,16:0.4:43,0,55 chr2 43783481 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:8:3,5:0.625:49,0,50 chr2 43794687 . T A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:36:23,13:0.361111:43,0,50 chr2 43800874 . A T 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:25:17,8:0.32:33,0,53 chr2 43809774 . T C 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:27:17,10:0.37037:40,0,56 chr2 43844486 . C A 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:27:15,12:0.444444:44,0,56 chr2 43844500 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:40:24,16:0.4:52,0,66 chr2 43844604 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:30,23:0.433962:47,0,48 chr2 43851865 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:13,12:0.48:51,0,60 chr2 43874399 . C T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:48:28,20:0.416667:50,0,58 chr2 43874510 . G GC 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:41:5,36:0.878049:46,34,0 chr2 43877786 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:153:1,152:0.993464:57,44,0 chr2 43889697 . C T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:47:31,16:0.340426:43,0,57 chr2 43918235 . G T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:26:7,19:0.730769:57,0,53 chr2 43925041 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:30:14,16:0.533333:44,0,45 chr2 43934715 . G GA 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:52:37,15:0.288462:28,0,55 chr2 43945305 . A C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:17,14:0.451613:48,0,60 chr2 43946283 . T G 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:49:32,17:0.346939:43,0,55 chr2 43948227 . A C 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:5,13:0.722222:49,0,44 chr2 43950562 . G C 25.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:19:15,4:0.210526:25,0,52 chr2 43974120 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:55:30,25:0.454545:48,0,57 chr2 43974237 . T C 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:61:40,21:0.344262:39,0,50 chr2 43982338 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:76:39,36:0.473684:49,0,54 chr2 44275649 . A C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:54:0,54:1:54,39,0 chr2 44304345 . C T 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:83:0,83:1:61,48,0 chr2 44320435 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:39,35:0.472973:46,0,57 chr2 44321474 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:24:14,10:0.416667:53,0,64 chr2 44329159 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:25:15,10:0.4:45,0,52 chr2 44338308 . A T 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:50:32,18:0.36:40,0,51 chr2 44342561 . AAAT A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:25,23:0.479167:44,0,57 chr2 44361802 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:115:63,52:0.452174:47,0,49 chr2 44411979 . ATTTTTTT A 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:27:11,2:0.0740741:2,0,37 chr2 44411979 . ATTT A 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:27:11,2:0.0740741:2,4,32 chr2 44411979 . ATT A 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:27:11,5:0.185185:2,2,22 chr2 44475839 . T C 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:23:17,6:0.26087:30,0,62 chr2 44631548 . T C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:31:22,9:0.290323:38,0,48 chr2 44715245 . C G 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:14:9,5:0.357143:28,0,51 chr2 44944703 . A G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:123:0,123:1:57,47,0 chr2 45650229 . T G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:59:0,59:1:56,42,0 chr2 45650417 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:95:0,95:1:56,45,0 chr2 45650522 . G T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:92:50,41:0.445652:49,0,52 chr2 45652166 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:76:48,28:0.368421:47,0,49 chr2 45652471 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:21:0,21:1:54,38,0 chr2 45701491 . G A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:53:37,16:0.301887:31,0,47 chr2 45984519 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:30:0,30:1:58,46,0 chr2 46010307 . C A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:15:9,6:0.4:46,0,63 chr2 46325787 . A T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:34:0,34:1:53,41,0 chr2 46356139 . C CG 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:110:0,109:0.990909:45,43,0 chr2 46356140 . C CT 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:113:0,113:1:48,43,0 chr2 46356142 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:119:0,119:1:46,45,0 chr2 46376524 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:18,16:0.470588:48,0,60 chr2 46380580 . T C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:107:44,63:0.588785:51,0,38 chr2 46512018 . A G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:16,22:0.578947:50,0,51 chr2 46581104 . GGA G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:22:10,12:0.545455:46,0,55 chr2 46612338 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:34:20,14:0.411765:45,0,57 chr2 46616943 . A AG 46.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:42:1,41:0.97619:46,45,0 chr2 46617080 . C CG 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:40:0,39:0.975:58,52,0 chr2 46759277 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:58:40,18:0.310345:43,0,54 chr2 46759577 . C G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:80:43,37:0.4625:44,0,50 chr2 46760161 . T G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:13,26:0.666667:53,0,53 chr2 46915811 . GCCCC G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 1/0:13:29:0,13:0.448276:39,25,43 chr2 46915811 . GCCC G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:29:0,12:0.413793:39,25,13 chr2 46950478 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:83:44,39:0.46988:47,0,55 chr2 46994386 . G C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:163:91,72:0.441718:47,0,55 chr2 47022100 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:53:27,26:0.490566:54,0,56 chr2 47024371 . G C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:101:58,43:0.425743:44,0,48 chr2 47050068 . C A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:49:28,21:0.428571:49,0,63 chr2 47050069 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:44:23,21:0.477273:48,0,63 chr2 47073890 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:86:45,41:0.476744:49,0,51 chr2 47153006 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:12:0,12:1:47,29,0 chr2 47172462 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:18:0,18:1:43,31,0 chr2 47373967 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:110:65,45:0.409091:50,0,51 chr2 47379635 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:32:13,19:0.59375:51,0,52 chr2 47385085 . C T 12.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:9:7,2:0.222222:12,0,41 chr2 47403411 . C G 36.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:34:22,12:0.352941:36,0,48 chr2 47429662 . G A 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:22:11,11:0.5:57,0,68 chr2 47429732 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:14,18:0.5625:56,0,56 chr2 47459501 . TTTTA T 6.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:36:33,3:0.0833333:4,0,43 chr2 47459547 . A G 23.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:45:37,8:0.177778:23,0,52 chr2 47463265 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:17:9,8:0.470588:51,0,62 chr2 47463269 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:17:9,8:0.470588:47,0,60 chr2 47463272 . T C 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:16:9,7:0.4375:57,0,63 chr2 47466567 . G T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:19:10,9:0.473684:46,0,53 chr2 47466820 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:23,15:0.394737:44,0,64 chr2 47471169 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:45:26,19:0.422222:57,0,66 chr2 47476361 . T C 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:73:51,22:0.30137:24,0,38 chr2 47512412 . A G 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:141:78,62:0.439716:37,0,52 chr2 47569923 . G A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:20:8,12:0.6:58,0,63 chr2 47783349 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:142:70,72:0.507042:46,0,49 chr2 47783419 . C A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:93:48,43:0.462366:40,0,47 chr2 47783515 . C G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:71:35,36:0.507042:48,0,44 chr2 47783882 . C G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:34:1,33:0.970588:55,52,0 chr2 47783919 . G A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:46:19,27:0.586957:58,0,57 chr2 47783952 . G C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:56:26,30:0.535714:56,0,56 chr2 47790942 . A G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:72:37,35:0.486111:54,0,58 chr2 47791175 . T A 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:59:32,27:0.457627:40,0,53 chr2 47795842 . G T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:43:21,22:0.511628:44,0,55 chr2 47795976 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:49,31:0.3875:46,0,57 chr2 47803699 . A T 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:78:53,25:0.320513:34,0,43 chr2 47805601 . A AT 25.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:72:39,17:0.236111:25,0,58 chr2 47805735 . ACTAT A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:27:0,27:1:54,37,0 chr2 47806412 . C G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:72:0,72:1:59,49,0 chr2 47806751 . CT C 6.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:36:11,14:0.388889:4,0,8 chr2 47808534 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:13:8,5:0.384615:48,0,59 chr2 47813765 . G GA 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:42:0,42:1:53,42,0 chr2 48346756 . G C 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:28:15,13:0.464286:46,0,50 chr2 48498471 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:35:0,35:1:57,45,0 chr2 48581455 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:43:0,43:1:57,40,0 chr2 48582454 . G T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:62:0,62:1:56,45,0 chr2 48595242 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:15:0,15:1:49,29,0 chr2 48617829 . C G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:76:0,75:0.986842:54,44,0 chr2 48669843 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:70:41,29:0.414286:51,0,52 chr2 48671659 . T A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:27:0,27:1:43,32,0 chr2 48679486 . T C 37.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:17:1,16:0.941176:36,5,0 chr2 48688732 . A G 64.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:81:0,81:1:64,55,0 chr2 48694236 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:33:0,33:1:56,41,0 chr2 48698607 . C T 63.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:58:43:0,43:1:63,59,0 chr2 48698847 . AT A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:34:2,31:0.911765:51,44,0 chr2 48729292 . T A 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:86:0,86:1:60,49,0 chr2 48729336 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:36:22,14:0.388889:52,0,52 chr2 48729373 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:25:20,5:0.2:37,0,61 chr2 48755616 . G GGCTGCA 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:88:46,37:0.420455:54,0,63 chr2 48776319 . C T 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:58:45,13:0.224138:35,0,50 chr2 48962782 . C T 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:93:64,29:0.311828:40,0,51 chr2 48963902 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:75:38,37:0.493333:47,0,45 chr2 49014710 . G A 30 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:27:21,6:0.222222:29,0,57 chr2 49154531 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:73:36,37:0.506849:50,0,57 chr2 49973972 . A G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:97:0,97:1:59,36,0 chr2 50023962 . A G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:37:25,12:0.324324:43,0,53 chr2 50346870 . GCGCCGCCGCCGCCGC G 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:80:12,67:0.8375:35,0,22 chr2 51032010 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:24,22:0.478261:48,0,54 chr2 51032510 . AAGAG A 10.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:42:22,5:0.119048:10,0,30 chr2 53787166 . A G 26.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:13:9,4:0.307692:26,0,46 chr2 53808371 . G C 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:57:42,15:0.263158:39,0,52 chr2 53826339 . T A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:18,13:0.419355:48,0,60 chr2 53854786 . T G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:37:20,17:0.459459:48,0,47 chr2 53888708 . T A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:54:30,23:0.425926:43,0,51 chr2 53893683 . G A 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:20:15,5:0.25:29,0,47 chr2 53899904 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:50:27,23:0.46:50,0,54 chr2 53904017 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:21:12,9:0.428571:52,0,60 chr2 53923100 . A G 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:23:17,6:0.26087:37,0,51 chr2 54052186 . A G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:112:72,38:0.339286:42,0,41 chr2 54065503 . C A 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:48:33,15:0.3125:37,0,50 chr2 54135508 . T C 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:25:16,9:0.36:44,0,57 chr2 54147418 . G T 26.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:142:104,38:0.267606:26,0,44 chr2 54334875 . C A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:22:15,7:0.318182:36,0,56 chr2 54360459 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:67:0,66:0.985075:53,37,0 chr2 54612139 . A G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:29:0,29:1:49,39,0 chr2 54621357 . A ACC 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:12,6:0.285714:45,0,65 chr2 54621358 . G C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:22:12,9:0.409091:38,0,56 chr2 54631077 . A G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:79:30,49:0.620253:54,0,54 chr2 54631374 . C T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:32,16:0.333333:45,0,54 chr2 54631527 . C T 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:51:36,15:0.294118:38,0,47 chr2 54650009 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:13:6,7:0.538462:47,0,48 chr2 54655244 . G A 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:94:52,42:0.446809:39,0,49 chr2 54659210 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:49,34:0.404762:47,0,68 chr2 54666100 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:51:23,28:0.54902:54,0,56 chr2 54813289 . A G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:37,13:0.26:44,0,56 chr2 54866722 . C G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:12:3,9:0.75:55,0,49 chr2 54894884 . T A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:25:13,12:0.48:52,0,64 chr2 54928535 . A G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:42:22,20:0.47619:49,0,52 chr2 54948975 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:71:36,35:0.492958:43,0,58 chr2 54959094 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:44:20,24:0.545455:53,0,49 chr2 54964761 . G T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:36:23,13:0.361111:46,0,56 chr2 54968801 . C A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:37:21,16:0.432432:44,0,49 chr2 54973902 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:15:0,15:1:55,38,0 chr2 55025041 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:11:4,7:0.636364:47,0,53 chr2 55025078 . T G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:16:12,4:0.25:44,0,63 chr2 55177658 . G A 29.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:52:38,14:0.269231:29,0,47 chr2 55180618 . C T 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:80:0,80:1:60,44,0 chr2 55181640 . G T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:29:25,4:0.137931:39,0,52 chr2 55181649 . C T 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:35:29,6:0.171429:42,0,53 chr2 55209878 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:12:4,8:0.666667:48,0,54 chr2 55212827 . C A 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:12:0,12:1:46,26,0 chr2 55222328 . T C 26.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:39:31,8:0.205128:26,0,51 chr2 55231958 . C G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:27:0,27:1:51,42,0 chr2 55232881 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:56:33,23:0.410714:48,0,54 chr2 55234349 . T A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:29:10,19:0.655172:60,0,60 chr2 55242979 . C T 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:32:20,12:0.375:41,0,53 chr2 55244271 . T C 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:17:0,17:1:58,43,0 chr2 55254186 . T A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:36:19,17:0.472222:50,0,58 chr2 55263652 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:43:16,27:0.627907:58,0,59 chr2 55263683 . G T 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:85:56,29:0.341176:46,0,56 chr2 55263871 . G GA 31.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:42:24,14:0.333333:31,0,62 chr2 55288954 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:40:27,13:0.325:41,0,59 chr2 55289187 . T G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:28,16:0.363636:48,0,51 chr2 55289366 . T C 10.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:12:10,2:0.166667:9,0,42 chr2 55289452 . G C 40.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:7:0,7:1:40,13,0 chr2 55289587 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:19:0,19:1:47,31,0 chr2 55289775 . AAGAGAG A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:30:0,29:0.966667:50,31,0 chr2 55289986 . G A 32.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:18:13,5:0.277778:32,0,51 chr2 55295286 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:49:0,49:1:57,38,0 chr2 55296172 . C CA 13.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:51:9,23:0.45098:13,0,19 chr2 55296173 . C A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:54:3,51:0.944444:52,51,0 chr2 55328457 . T C 4.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:24:21,3:0.125:1,0,35 chr2 55349498 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:49:0,49:1:58,54,0 chr2 55355548 . A T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:31:16,15:0.483871:50,0,57 chr2 55362298 . T A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:14:7,7:0.5:54,0,60 chr2 55372519 . G A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:15:11,4:0.266667:31,0,56 chr2 55403553 . C T 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:39:29,10:0.25641:40,0,55 chr2 55403593 . T A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:31:0,31:1:59,55,0 chr2 55403877 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:33:17,16:0.484848:51,0,62 chr2 55403954 . T C 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:22:0,22:1:51,42,0 chr2 55404161 . T G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:15:8,7:0.466667:48,0,47 chr2 55404400 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:13:0,13:1:55,35,0 chr2 55404712 . T G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:22:0,22:1:51,38,0 chr2 55405193 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:66:0,66:1:56,38,0 chr2 55405588 . T C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:11:0,11:1:47,26,0 chr2 55519819 . A C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:68:41,27:0.397059:50,0,48 chr2 55519953 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:14,16:0.533333:50,0,53 chr2 55535821 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:10:2,8:0.8:48,0,30 chr2 55537618 . AATATGAATAC A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:8,15:0.652174:50,0,54 chr2 55543914 . C G 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:21:14,7:0.333333:38,0,61 chr2 55544025 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:55:0,55:1:57,44,0 chr2 55578304 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:29:0,29:1:51,37,0 chr2 55617309 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:22:12,10:0.454545:47,0,58 chr2 55636225 . T TA 23.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:42:26,11:0.261905:23,0,53 chr2 55640710 . A G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:20,15:0.428571:44,0,55 chr2 55656182 . G T 6.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:45:36,8:0.177778:5,0,30 chr2 55661927 . G A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:15:0,15:1:53,38,0 chr2 55667112 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:54:27,27:0.5:51,0,55 chr2 55672093 . A T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:21:0,21:1:57,43,0 chr2 55673096 . G GA 17 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:61:42,18:0.295082:16,0,51 chr2 55684985 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:49:22,26:0.530612:51,0,51 chr2 55693614 . C T 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:8:1,7:0.875:37,0,13 chr2 55874926 . GA G 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:36:22,13:0.361111:34,0,57 chr2 55881747 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:41:16,25:0.609756:49,0,50 chr2 56183809 . C CCG 39.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:21:0,18:0.857143:39,30,0 chr2 56184022 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:28:0,28:1:52,41,0 chr2 56184682 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:36:0,36:1:56,42,0 chr2 56192871 . A T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:101:56,45:0.445545:54,0,62 chr2 56193161 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:55,52:0.485981:47,0,56 chr2 56375983 . C G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,18:1:49,34,0 chr2 57907875 . C G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:23:11,12:0.521739:53,0,65 chr2 57907876 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:23:11,12:0.521739:54,0,65 chr2 58161561 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:40:0,40:1:55,39,0 chr2 58204275 . G C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:15,11:0.423077:45,0,58 chr2 58213735 . A AG 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:8:3,5:0.625:39,0,44 chr2 58226708 . G GA 16.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:53:31,20:0.377358:16,0,56 chr2 60460824 . A G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:51:0,51:1:58,49,0 chr2 60894357 . G A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:10:0,10:1:45,23,0 chr2 60948177 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:76:31,45:0.592105:45,0,47 chr2 60962794 . C T 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:5:3,2:0.4:41,0,41 chr2 61008720 . C A 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:6:2,4:0.666667:34,0,34 chr2 61077136 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:15,19:0.558824:48,0,53 chr2 61088430 . T C 26.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:22:17,5:0.227273:26,0,54 chr2 61110315 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:37:21,16:0.432432:44,0,48 chr2 61177770 . C G 13.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:45:37,8:0.177778:13,0,36 chr2 61186588 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:17:0,17:1:52,37,0 chr2 61190482 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:27:16,11:0.407407:48,0,63 chr2 61223319 . A G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:13:0,13:1:43,26,0 chr2 61256413 . A T 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:28:20,8:0.285714:37,0,54 chr2 61294912 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:18:11,7:0.388889:47,0,56 chr2 61294988 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:18:0,18:1:57,44,0 chr2 61325349 . T A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:15:0,15:1:44,27,0 chr2 61348173 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:1,59:0.983333:57,45,0 chr2 61350300 . T C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:27,13:0.325:43,0,55 chr2 61380375 . G A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:23:13,10:0.434783:40,0,48 chr2 61522581 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:26:17,9:0.346154:52,0,60 chr2 61839792 . A G 63.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:74:0,74:1:63,52,0 chr2 61842393 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:15,10:0.4:48,0,66 chr2 61853877 . A C 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:72:0,72:1:59,47,0 chr2 61854082 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:34:0,34:1:59,44,0 chr2 61873245 . G T 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:13:10,3:0.230769:31,0,54 chr2 61880241 . T TC 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:23:0,22:0.956522:46,34,0 chr2 61883416 . CAA C 29.5 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:18:2,11:0.611111:26,12,1 chr2 61883416 . CA C 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:18:2,4:0.222222:26,12,16 chr2 61883436 . G T 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:17:12,4:0.235294:0,0,27 chr2 61885086 . G GA 35.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:30:1,27:0.9:35,26,0 chr2 61885087 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:27:0,27:1:46,42,0 chr2 62000998 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:16:8,8:0.5:44,0,51 chr2 62135860 . T C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:20:13,7:0.35:38,0,52 chr2 62461048 . T C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:19,13:0.40625:47,0,57 chr2 62502539 . T C 43.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:18:0,18:1:43,23,0 chr2 62511748 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:9:0,9:1:50,23,0 chr2 62511796 . G C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:20:0,20:1:47,44,0 chr2 63259294 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:47:0,47:1:58,45,0 chr2 63842598 . G A 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:86:0,86:1:62,47,0 chr2 63857980 . G A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:20:0,20:1:55,45,0 chr2 63912336 . A T 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:18:11,7:0.388889:37,0,48 chr2 63912700 . A T 8.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:8:6,2:0.25:7,0,38 chr2 63962432 . A G 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:47:31,16:0.340426:34,0,50 chr2 64569713 . A G 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:39:25,14:0.358974:35,0,52 chr2 64988655 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:17:10,7:0.411765:49,0,51 chr2 64989955 . G C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:82:38,44:0.536585:50,0,57 chr2 65071705 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:71:36,35:0.492958:49,0,52 chr2 65072632 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:96:48,48:0.5:53,0,53 chr2 65253874 . A C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:16:8,8:0.5:46,0,60 chr2 65261404 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:17,13:0.433333:47,0,49 chr2 65268753 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:26:14,12:0.461538:48,0,63 chr2 67399206 . C T 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:43:30,13:0.302326:32,0,54 chr2 67403176 . A C 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:9:4,5:0.555556:44,0,47 chr2 67403344 . T C 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:13,17:0.566667:46,0,62 chr2 67403848 . G A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:40:0,40:1:60,45,0 chr2 67403997 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:23:15,8:0.347826:51,0,63 chr2 67404263 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:18:6,12:0.666667:54,0,48 chr2 67404699 . G A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:21,14:0.4:51,0,61 chr2 67404993 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:54,39,0 chr2 67405082 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:29:18,11:0.37931:46,0,54 chr2 67410064 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:10:0,10:1:52,33,0 chr2 67410085 . GTGAT G 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:7:3,4:0.571429:37,0,33 chr2 68042936 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:15:0,15:1:47,28,0 chr2 68131209 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:42:21,21:0.5:55,0,99 chr2 68137346 . T C 19.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:59:47,12:0.20339:19,0,47 chr2 68157965 . A G 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:71:0,71:1:61,48,0 chr2 68161691 . A G 24.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:35:25,10:0.285714:24,0,49 chr2 68162349 . CTT C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:14,13:0.481481:53,0,46 chr2 68188635 . G A 25.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:57:43,14:0.245614:25,0,43 chr2 68284452 . A G 3.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:15:13,2:0.133333:1,0,35 chr2 68319172 . T C 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:8:5,3:0.375:33,0,49 chr2 68319242 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:18,12:0.4:51,0,56 chr2 68365364 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:75:46,29:0.386667:55,0,59 chr2 68380815 . G T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:53:33,20:0.377358:44,0,50 chr2 68394206 . G T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:16,10:0.384615:47,0,55 chr2 68395782 . G A 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:97:0,97:1:60,53,0 chr2 68395820 . G C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:51:0,51:1:58,45,0 chr2 68490217 . C T 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:43:32,11:0.255814:32,0,55 chr2 68502860 . A G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:54:27,27:0.5:43,0,53 chr2 68526108 . T A 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:69:51,18:0.26087:35,0,49 chr2 68567396 . G T 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:9:5,4:0.444444:38,0,47 chr2 68645939 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:108:59,48:0.444444:48,0,54 chr2 68800065 . A G 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:37:0,37:1:61,46,0 chr2 68813368 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:54:0,54:1:55,35,0 chr2 68816132 . CT C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:28:0,28:1:47,32,0 chr2 68816134 . T A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:28:0,26:0.928571:44,31,0 chr2 68822807 . G T 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:51:1,49:0.960784:59,38,0 chr2 68825983 . G T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:47:26,21:0.446809:50,0,54 chr2 68866156 . G T 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:76:54,22:0.289474:30,0,51 chr2 68922574 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:43:25,18:0.418605:47,0,57 chr2 68922585 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:27:17,10:0.37037:57,0,63 chr2 68922849 . A G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:26,12:0.315789:45,0,49 chr2 68924560 . C G 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:31:27,4:0.129032:22,0,45 chr2 68924591 . C T 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:36:30,6:0.166667:22,0,43 chr2 68924614 . A C 33.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:38:32,6:0.157895:33,0,51 chr2 68924714 . C A 14.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:11:9,2:0.181818:14,0,47 chr2 68925812 . A G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:37:26,11:0.297297:41,0,56 chr2 68946438 . C T 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:61:35,26:0.42623:39,0,50 chr2 68950179 . T C 35.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:46:33,13:0.282609:35,0,56 chr2 68952842 . A G 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:51:38,13:0.254902:37,0,52 chr2 68977539 . A T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:16:6,10:0.625:48,0,59 chr2 68980707 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:41:18,23:0.560976:55,0,61 chr2 69070765 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:24:15,9:0.375:51,0,66 chr2 69102986 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:92:43,49:0.532609:46,0,47 chr2 69145315 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:62:36,26:0.419355:50,0,59 chr2 69181897 . C A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:13,11:0.458333:42,0,63 chr2 69193459 . T TCA 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:77:32,22:0.285714:27,0,44 chr2 69193459 . T TCACA 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:77:32,7:0.0909091:27,0,44 chr2 69193464 . T C 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:75:28,43:0.573333:45,0,45 chr2 69326243 . GA G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:53:5,43:0.811321:46,20,0 chr2 69345897 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:39:0,39:1:56,34,0 chr2 69359238 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:13,21:0.617647:51,0,49 chr2 69382972 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:64:0,64:1:50,38,0 chr2 69387029 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:96:0,96:1:59,46,0 chr2 69431994 . A T 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:79:0,79:1:59,47,0 chr2 69514722 . T G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:41:0,41:1:58,42,0 chr2 69788049 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:30,27:0.473684:48,0,51 chr2 69789890 . A G 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:98:0,98:1:60,49,0 chr2 69789971 . G T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:19,11:0.366667:45,0,57 chr2 69790260 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:51:23,28:0.54902:55,0,55 chr2 69804665 . C G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:32:0,32:1:54,45,0 chr2 69806452 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:47,27:0.364865:46,0,56 chr2 69806517 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:22:0,22:1:55,50,0 chr2 69816083 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:30:16,14:0.466667:54,0,57 chr2 69839439 . C CTT 8.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:16:9,4:0.25:7,0,48 chr2 69840925 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:37:17,20:0.540541:54,0,55 chr2 69894065 . T C 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:35:23,12:0.342857:38,0,56 chr2 69896432 . T C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:35:18,17:0.485714:57,0,58 chr2 69903287 . G T 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:20:10,10:0.5:37,0,50 chr2 69935402 . T G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:61:0,61:1:51,45,0 chr2 69961544 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:106:0,106:1:56,46,0 chr2 70181958 . C G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:30:16,14:0.466667:43,0,49 chr2 70224652 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:53:31,22:0.415094:52,0,58 chr2 70300960 . G A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:70:32,38:0.542857:53,0,49 chr2 70450862 . G A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:49,28:0.363636:43,0,51 chr2 70674653 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:31:13,18:0.580645:55,0,59 chr2 70674656 . GGT G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:33:15,18:0.545455:53,0,56 chr2 70678983 . C A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:44:1,43:0.977273:50,37,0 chr2 70688002 . C G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:33:20,13:0.393939:45,0,50 chr2 70785472 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:113:54,59:0.522124:54,0,53 chr2 70785602 . C G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:82:0,82:1:58,47,0 chr2 70809350 . T C 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:64:41,22:0.34375:42,0,47 chr2 70816329 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:80:40,40:0.5:53,0,53 chr2 70817079 . C T 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:87:48,39:0.448276:43,0,53 chr2 70825281 . C T 27.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:2:0,2:1:26,6,0 chr2 70825363 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:4:0,4:1:36,8,0 chr2 70830761 . A G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:21:0,21:1:55,45,0 chr2 70831704 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:97:50,47:0.484536:54,0,56 chr2 70832906 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:67:26,41:0.61194:52,0,51 chr2 70832980 . G A 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:90:64,26:0.288889:32,0,46 chr2 70835517 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:112:58,54:0.482143:48,0,57 chr2 70959252 . G A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:125:73,52:0.416:41,0,45 chr2 70962727 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:83:46,35:0.421687:46,0,56 chr2 70978846 . A G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:9,9:0.5:50,0,53 chr2 70984281 . CTG C 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:28:18,10:0.357143:38,0,51 chr2 70984287 . C G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:16:9,7:0.4375:40,0,53 chr2 70984685 . G A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:86:39,47:0.546512:55,0,44 chr2 70984859 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:116:0,116:1:60,41,0 chr2 70984999 . A T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:46,45:0.494505:51,0,51 chr2 70985275 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:98:52,46:0.469388:45,0,51 chr2 70993663 . T G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:24,22:0.478261:50,0,60 chr2 70994692 . A G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:87:0,87:1:58,47,0 chr2 71070565 . T C 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:42:28,14:0.333333:34,0,55 chr2 71070852 . C T 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:49:25,24:0.489796:39,0,53 chr2 71071645 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:17,13:0.433333:44,0,55 chr2 71078326 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:50:27,23:0.46:51,0,62 chr2 71078531 . C G 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:22:9,13:0.590909:37,0,48 chr2 71124273 . C A 63 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:94:0,94:1:62,45,0 chr2 71133152 . G A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:34:0,34:1:57,42,0 chr2 71133593 . A G 34.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:13:0,13:1:34,26,0 chr2 71133605 . T TTCC 10.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:7:5,2:0.285714:10,0,16 chr2 71189935 . G T 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:56:0,56:1:51,38,0 chr2 71190004 . C T 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:45:32,13:0.288889:41,0,52 chr2 71393433 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:113:53,60:0.530973:53,0,61 chr2 71393688 . C T 65.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:166:0,166:1:65,48,0 chr2 71393852 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:62:35,27:0.435484:52,0,53 chr2 71403979 . A G 21.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:27:19,8:0.296296:21,0,56 chr2 71406145 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:21,21:0.5:52,0,60 chr2 71406259 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:29:16,12:0.413793:46,0,58 chr2 71427045 . G A 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:51:38,13:0.254902:30,0,56 chr2 71427320 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:52:34,18:0.346154:47,0,54 chr2 71431411 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:29,23:0.442308:51,0,52 chr2 71466813 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:100:36,64:0.64:55,0,45 chr2 71482001 . C G 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:45:22,23:0.511111:36,0,59 chr2 71511857 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:91:47,44:0.483516:52,0,55 chr2 71515606 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:52:23,29:0.557692:56,0,54 chr2 71515762 . T C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:161:91,69:0.428571:38,0,46 chr2 71520958 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:40:16,24:0.6:46,0,49 chr2 71526357 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:71:37,34:0.478873:47,0,54 chr2 71528250 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:40:1,38:0.95:58,44,0 chr2 71535102 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:87:42,45:0.517241:46,0,53 chr2 71551090 . C T 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:115:74,41:0.356522:34,0,53 chr2 71551699 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:135:86,49:0.362963:44,0,50 chr2 71553085 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:165:76,89:0.539394:49,0,49 chr2 71555922 . G T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:15:7,8:0.533333:44,0,57 chr2 71564202 . A G 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:85:57,28:0.329412:37,0,49 chr2 71568022 . A T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:137:0,137:1:58,46,0 chr2 71570582 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:75:53,22:0.293333:47,0,59 chr2 71570632 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:125:81,44:0.352:47,0,57 chr2 71611467 . C A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:77:0,77:1:61,44,0 chr2 71644106 . A G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:30:0,30:1:58,46,0 chr2 71664231 . C T 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:99:0,99:1:59,45,0 chr2 71674156 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:44:0,44:1:54,46,0 chr2 71679041 . T C 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:107:0,107:1:58,45,0 chr2 71679148 . A C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:163:92,71:0.435583:38,0,44 chr2 71682536 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:171:90,81:0.473684:48,0,50 chr2 71682692 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:100:46,54:0.54:47,0,41 chr2 71933045 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:87:0,87:1:56,45,0 chr2 71933063 . A C 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:105:58,47:0.447619:57,0,64 chr2 72438825 . G A 37.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:7:0,7:1:37,17,0 chr2 72465143 . A AAG 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:35:1,30:0.857143:51,49,0 chr2 72480745 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:52:28,24:0.461538:50,0,59 chr2 72731204 . T C 32.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:78:58,20:0.25641:32,0,42 chr2 72961092 . CCCCTG C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:26:10,16:0.615385:53,0,62 chr2 72961293 . G C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:8,11:0.578947:50,0,52 chr2 73112302 . T G 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:14:10,4:0.285714:33,0,52 chr2 73112580 . G A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:108:59,49:0.453704:52,0,54 chr2 73202680 . G C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:25,21:0.456522:47,0,61 chr2 73208658 . C A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:20:6,14:0.7:56,0,53 chr2 73220647 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:47:0,47:1:59,52,0 chr2 73223011 . A T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:20,24:0.533333:50,0,52 chr2 73228472 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:95:58,37:0.389474:43,0,51 chr2 73228619 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:22,17:0.435897:48,0,61 chr2 73229420 . A ATGCCTGCCCACTCCTCGTGTCC 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:15,5:0.166667:45,0,61 chr2 73233165 . AGGGCC A 36.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:21:1,18:0.857143:36,18,0 chr2 73234355 . C A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:86:47,39:0.453488:51,0,53 chr2 73240548 . GAA G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:48:20,28:0.583333:42,0,58 chr2 73244525 . T G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:43:15,28:0.651163:55,0,53 chr2 73251333 . A T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:50:29,21:0.42:45,0,60 chr2 73263284 . A G 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:51:0,51:1:54,43,0 chr2 73264555 . G A 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:28:17,11:0.392857:39,0,46 chr2 73266175 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:75:42,33:0.44:48,0,51 chr2 73291607 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:66:32,34:0.515152:55,0,59 chr2 73385903 . TGGAGGA T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/0:42:75:6,27:0.36:51,46,66 chr2 73385903 . T TGGA 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:75:6,35:0.466667:51,46,57 chr2 73386213 . G A 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:104:64,40:0.384615:33,0,54 chr2 73422994 . T A 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:62:40,22:0.354839:38,0,56 chr2 73424839 . C T 36.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:70:51,19:0.271429:36,0,48 chr2 73448097 . TCTC T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:47:22,25:0.531915:50,0,61 chr2 73448542 . T G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:61:0,61:1:59,43,0 chr2 73448717 . C T 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:82:59,23:0.280488:37,0,53 chr2 73450706 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:31:15,16:0.516129:52,0,61 chr2 73450771 . G C 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:51:33,18:0.352941:41,0,58 chr2 73452153 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:62:31,31:0.5:47,0,55 chr2 73452739 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:24,20:0.454545:51,0,54 chr2 73452863 . T A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:20,24:0.545455:44,0,52 chr2 73453381 . G C 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:50:34,16:0.32:39,0,56 chr2 73490440 . G T 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:47:25,22:0.468085:46,0,61 chr2 73490529 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:20,19:0.487179:51,0,54 chr2 73490739 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:31,23:0.425926:45,0,56 chr2 73519796 . C T 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:81:55,26:0.320988:38,0,52 chr2 73601183 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:47,40:0.45977:49,0,55 chr2 73601411 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:107:60,47:0.439252:44,0,54 chr2 73602245 . C T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:105:60,45:0.428571:42,0,51 chr2 73641201 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:87:47,40:0.45977:53,0,50 chr2 73700804 . A G 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:81:0,81:1:58,41,0 chr2 73700971 . C G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:128:0,128:1:59,45,0 chr2 73701239 . G C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:120:57,63:0.525:49,0,57 chr2 73737317 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:85:45,40:0.470588:49,0,56 chr2 73766947 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:19:0,19:1:51,39,0 chr2 73778276 . G C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:67:32,35:0.522388:52,0,48 chr2 73780009 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:90:41,49:0.544444:53,0,46 chr2 73815999 . A C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:94:52,42:0.446809:42,0,48 chr2 73830868 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:127:71,56:0.440945:48,0,57 chr2 73853032 . T C 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:60:40,19:0.316667:35,0,51 chr2 73897015 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:128:86,42:0.328125:50,0,59 chr2 73897044 . G A 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:131:88,43:0.328244:53,0,65 chr2 73897215 . A G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:98:0,98:1:59,42,0 chr2 73901264 . G C 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:16:0,16:1:49,48,0 chr2 73901306 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:59:0,59:1:52,52,0 chr2 73902347 . T C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:46:21,25:0.543478:54,0,55 chr2 73902537 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:61:26,35:0.57377:55,0,54 chr2 73908670 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:73:0,73:1:58,40,0 chr2 73908771 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:59:0,59:1:56,39,0 chr2 73913454 . A T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:17:0,17:1:55,43,0 chr2 73913662 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:18:0,18:1:47,31,0 chr2 73950650 . A G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:143:82,61:0.426573:42,0,57 chr2 73958749 . A T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:14,8:0.363636:43,0,56 chr2 73985020 . T C 31.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:3:0,3:1:31,17,0 chr2 74255765 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:47:22,25:0.531915:51,0,57 chr2 74262191 . G A 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:71:51,20:0.28169:31,0,51 chr2 74367887 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:55:23,32:0.581818:57,0,57 chr2 74370400 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:129:73,56:0.434109:46,0,48 chr2 74377768 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:38:16,22:0.578947:50,0,48 chr2 74414497 . G C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:168:97,71:0.422619:46,0,56 chr2 74422143 . C A 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:77:45,32:0.415584:34,0,54 chr2 74426960 . C T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:66:50,16:0.242424:36,0,59 chr2 74455385 . C T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:42:14,28:0.666667:53,0,51 chr2 74460423 . T C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:64:36,27:0.421875:42,0,56 chr2 74462912 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:98:50,48:0.489796:45,0,48 chr2 74463251 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:76:47,29:0.381579:45,0,59 chr2 74472651 . C A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:36,32:0.470588:45,0,54 chr2 74483364 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:102:57,45:0.441176:44,0,48 chr2 74492783 . G T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:22:10,12:0.545455:44,0,44 chr2 74492875 . C G 63.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:27:0,27:1:63,53,0 chr2 74498017 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:56:0,56:1:53,43,0 chr2 74498051 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:64:38,26:0.40625:44,0,54 chr2 74519195 . A T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:60:33,27:0.45:44,0,59 chr2 74523895 . G GT 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:21,15:0.405405:48,0,65 chr2 74528984 . G GA 29 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:20:7,12:0.6:29,0,30 chr2 74530427 . G T 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:128:81,47:0.367188:34,0,55 chr2 74531807 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:41,28:0.405797:48,0,48 chr2 74534295 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:91:49,42:0.461538:51,0,58 chr2 74673461 . G T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:67:39,28:0.41791:41,0,54 chr2 74674475 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:13,26:0.666667:55,0,51 chr2 74675745 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:58:25,33:0.568965:50,0,53 chr2 74878671 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:81:0,81:1:59,50,0 chr2 74886445 . G A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:42:26,16:0.380952:49,0,55 chr2 74886530 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:55:31,24:0.436364:53,0,56 chr2 74886662 . C G 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:32:19,13:0.40625:37,0,58 chr2 74887981 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:60,47:0.439252:48,0,52 chr2 74889500 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:12:5,7:0.583333:47,0,56 chr2 74958729 . G T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:58:0,58:1:51,35,0 chr2 75198497 . G A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:36:25,11:0.305556:40,0,59 chr2 75198602 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:122:82,40:0.327869:47,0,48 chr2 75209060 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:166:84,82:0.493976:57,0,59 chr2 75493538 . G A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:74:44,30:0.405405:42,0,56 chr2 75517792 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:43:0,43:1:53,42,0 chr2 79026692 . C G 31.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:54:18,35:0.648148:31,0,44 chr2 79027135 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:41:0,41:1:51,39,0 chr2 79028199 . G C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:27,30:0.526316:49,0,49 chr2 79028300 . G C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:76:0,76:1:56,39,0 chr2 79085288 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:21,27:0.5625:48,0,46 chr2 79086968 . G T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:26:13,12:0.461538:48,0,56 chr2 79123221 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:33:0,33:1:44,34,0 chr2 79373788 . C T 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:44,27,0 chr2 79373822 . A C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:22:0,22:1:57,51,0 chr2 79373874 . G C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:39:0,39:1:47,38,0 chr2 80302831 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:104:55,49:0.471154:52,0,55 chr2 80574221 . T C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:110:60,50:0.454545:55,0,53 chr2 84449762 . TAAA T 10.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:33:16,7:0.212121:10,13,0 chr2 84528872 . A AT 45.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:26:5,15:0.576923:45,32,0 chr2 84528925 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:45:0,45:1:57,43,0 chr2 84544356 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:17:0,17:1:54,39,0 chr2 84544443 . C T 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:18:0,18:1:56,36,0 chr2 84573481 . C A 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:57:0,57:1:62,45,0 chr2 84606939 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:64:0,63:0.984375:57,41,0 chr2 84607113 . T C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:38:0,38:1:52,33,0 chr2 84670393 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:26:0,26:1:57,44,0 chr2 85322745 . A G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:14:0,14:1:51,32,0 chr2 85326661 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:46:0,46:1:52,39,0 chr2 85326957 . G A 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:87:41,46:0.528736:44,0,52 chr2 85343819 . G C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:39:23,16:0.410256:43,0,30 chr2 85344587 . A G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:54:0,54:1:57,45,0 chr2 85345926 . G A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:32:16,16:0.5:58,0,65 chr2 85363163 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:61:28,33:0.540984:49,0,51 chr2 85542123 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:15:0,15:1:53,37,0 chr2 85550510 . C G 16.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:48:39,9:0.1875:16,0,44 chr2 85561017 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:39:0,39:1:57,42,0 chr2 85621624 . CT C 15.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:14:6,6:0.428571:15,0,32 chr2 85663648 . T G 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:53:1,52:0.981132:55,39,0 chr2 85666618 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:52:28,24:0.461538:47,0,53 chr2 85667185 . G T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:18,17:0.485714:47,0,53 chr2 85668215 . T G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:26,27:0.509434:48,0,53 chr2 85694869 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:19:0,19:1:56,36,0 chr2 85697606 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:51:0,51:1:51,40,0 chr2 85698544 . G A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:62:0,62:1:60,53,0 chr2 85698557 . T G 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:63:0,63:1:59,49,0 chr2 85698633 . C G 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:123:0,123:1:62,42,0 chr2 85698725 . C G 65.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:119:0,118:0.991597:65,55,0 chr2 85754638 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:49:0,49:1:55,40,0 chr2 85861188 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:32:0,32:1:56,44,0 chr2 85867563 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:48:2,46:0.958333:53,36,0 chr2 86031661 . T G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:111:0,110:0.990991:59,38,0 chr2 86032320 . C T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:122:0,122:1:58,44,0 chr2 86048862 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:26:0,26:1:50,41,0 chr2 86074980 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,74:1:59,48,0 chr2 86077809 . GCGCACACACACA G 38.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:36:2,29:0.805556:38,28,0 chr2 86078000 . T C 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:75:0,75:1:61,46,0 chr2 86088618 . C T 65.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:109:0,109:1:65,51,0 chr2 86089914 . G C 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:74:0,73:0.986486:59,45,0 chr2 86105686 . G A 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:76:0,76:1:58,42,0 chr2 86132282 . G T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:29:0,29:1:57,44,0 chr2 86137583 . TG T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:38:0,38:1:45,33,0 chr2 86144760 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:97:0,97:1:55,40,0 chr2 86158545 . T C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:11:0,11:1:51,32,0 chr2 86158559 . TC T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:13:0,13:1:49,43,0 chr2 86158763 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:9:0,9:1:44,22,0 chr2 86171168 . G A 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:40:0,40:1:55,46,0 chr2 86181262 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:38:0,38:1:56,46,0 chr2 86194950 . G C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:57:0,57:1:52,40,0 chr2 86195293 . T C 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:34:0,34:1:62,55,0 chr2 86195298 . T G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:40:1,39:0.975:57,50,0 chr2 86206117 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:47:0,47:1:54,38,0 chr2 86220150 . T G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:46:1,45:0.978261:56,38,0 chr2 86251912 . A G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:26:0,26:1:52,42,0 chr2 86254712 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:48:0,48:1:58,42,0 chr2 86282144 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:12:0,12:1:48,29,0 chr2 86282265 . T G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:0,17:1:55,35,0 chr2 86336724 . T C 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:52:28,24:0.461538:39,0,51 chr2 86456519 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:33:0,33:1:56,40,0 chr2 86456778 . G C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:7,18:0.72:58,0,51 chr2 86464127 . G A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:76:0,76:1:57,42,0 chr2 86466703 . T C 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:51:38,13:0.254902:36,0,48 chr2 86480325 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:37:20,17:0.459459:47,0,63 chr2 86480381 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:13:0,13:1:47,42,0 chr2 86485697 . A T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:33:13,20:0.606061:56,0,53 chr2 86510526 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:18:8,10:0.555556:50,0,56 chr2 86529258 . T G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:88:51,37:0.420455:49,0,51 chr2 86622899 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:26:0,26:1:47,39,0 chr2 86720660 . C T 45 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:16:0,16:1:45,34,0 chr2 86751970 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:41:0,40:0.97561:53,36,0 chr2 86765214 . T TAA 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:27:0,27:1:50,42,0 chr2 86771536 . CT C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:47:6,28:0.595745:43,35,0 chr2 86788510 . T TGA 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:81:0,80:0.987654:53,48,0 chr2 86842256 . G A 21 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:30:21,9:0.3:20,0,43 chr2 86861841 . A G 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:74:43,31:0.418919:39,0,50 chr2 86942332 . ACGGCCTCGACCTGGCCGGGCGG A 27 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:48:7,41:0.854167:27,0,20 chr2 87144216 . C T 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:17:10,6:0.352941:30,0,56 chr2 87146464 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:25:14,11:0.44:36,0,52 chr2 87338940 . C T 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:8:3,5:0.625:35,0,43 chr2 87713394 . A G 28.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:4:0,4:1:28,15,0 chr2 87719849 . G A 25.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:5:0,5:1:25,15,0 chr2 87719857 . C T 16.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:4:0,4:1:15,16,0 chr2 87737745 . G A 6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:44:37,7:0.159091:4,0,36 chr2 87771383 . GTTTTTTTT G 11.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:4:1,3:0.75:10,8,0 chr2 87989688 . G A 26.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:6:0,6:1:26,31,0 chr2 87989849 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:14:0,14:1:42,31,0 chr2 87992783 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:6:0,6:1:44,21,0 chr2 88087884 . C A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:68:0,68:1:55,44,0 chr2 88124547 . T C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:202:123,79:0.391089:46,0,51 chr2 88173272 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:84:0,84:1:54,37,0 chr2 88174851 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:31:0,31:1:59,45,0 chr2 88185289 . C A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:29:18,11:0.37931:46,0,58 chr2 88185873 . G C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:47:0,47:1:55,42,0 chr2 88448871 . A T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:21:10,11:0.52381:48,0,44 chr2 88575373 . C A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:66:39,27:0.409091:41,0,48 chr2 88583424 . T A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:15,16:0.516129:52,0,56 chr2 88595605 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:55:32,23:0.418182:49,0,56 chr2 88613755 . G C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:125:74,51:0.408:49,0,54 chr2 88627211 . CCAG C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:50:15,34:0.68:42,0,42 chr2 88861557 . C G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:17:0,17:1:48,40,0 chr2 88861560 . C T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:18:0,18:1:58,47,0 chr2 88966502 . A T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:38:0,38:1:46,35,0 chr2 89040479 . G A 7.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:21:17,4:0.190476:6,0,38 chr2 89085363 . T C 16.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:52:31,21:0.403846:16,0,35 chr2 89213880 . A G 40 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:24:0,24:1:39,28,0 chr2 89581083 . C T 9.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:232:157,75:0.323276:9,0,29 chr2 89585628 . G A 19.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:59:26,33:0.559322:19,0,37 chr2 89885208 . T C 14.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:2:0,2:1:13,11,0 chr2 90069936 . G T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:25:0,25:1:54,37,0 chr2 90082833 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:31:0,31:1:53,40,0 chr2 90173209 . A G 7.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:58:39,19:0.327586:6,0,48 chr2 90190408 . C T 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:28:19,9:0.321429:40,0,61 chr2 90220982 . G T 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:77:38,39:0.506494:35,0,46 chr2 90221099 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:20:8,12:0.6:53,0,59 chr2 90221325 . C T 28.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:62:47,15:0.241935:28,0,57 chr2 90359480 . C A 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:50:35,15:0.3:39,0,57 chr2 90360313 . C G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:26:10,16:0.615385:55,0,56 chr2 91442127 . C T 15.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:69:52,17:0.246377:15,0,55 chr2 91442637 . G A 4.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:9:6,3:0.333333:2,0,44 chr2 91442641 . G C 8.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:10:8,2:0.2:8,0,48 chr2 91442653 . C T 18.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:9:6,3:0.333333:18,0,50 chr2 94216756 . A G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:106:51,52:0.490566:46,0,55 chr2 94588507 . T C 26.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:27:19,8:0.296296:26,0,49 chr2 95158879 . G T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:43:23,20:0.465116:48,0,51 chr2 95279154 . A AC 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:39:1,38:0.974359:53,50,0 chr2 95279820 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:0,25:1:56,39,0 chr2 95281337 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:104:0,104:1:56,50,0 chr2 95286429 . C G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:19:0,19:1:54,42,0 chr2 95297494 . C G 24.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:50:0,47:0.94:24,29,0 chr2 95347159 . C G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:36:0,36:1:54,49,0 chr2 95857261 . A C 37.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:15:0,15:1:37,26,0 chr2 95857299 . A G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:25:0,25:1:43,45,0 chr2 95880604 . G A 32.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:16:6,10:0.625:32,0,32 chr2 95882320 . C T 16.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:24:21,3:0.125:16,0,43 chr2 95888024 . G C 31.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:13:6,7:0.538462:31,0,47 chr2 95889774 . C A 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:15:9,6:0.4:34,0,52 chr2 95897458 . A T 11.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:9:6,3:0.333333:10,0,10 chr2 95919955 . A G 8.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:17:14,3:0.176471:8,0,41 chr2 95921748 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:5:2,3:0.6:44,0,40 chr2 95960544 . C T 42.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:20:0,20:1:42,35,0 chr2 95960702 . G T 4.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:3:1,2:0.666667:2,0,22 chr2 95987068 . CAA C 18.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:23:20,3:0.130435:18,0,38 chr2 96013636 . C T 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:29:19,10:0.344828:38,0,58 chr2 96013992 . G C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:16,15:0.483871:53,0,54 chr2 96015333 . C T 10.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:30:19,11:0.366667:10,0,22 chr2 96019273 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:105:55,50:0.47619:36,0,51 chr2 96023430 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:92:44,48:0.521739:46,0,50 chr2 96114968 . T G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:73:38,35:0.479452:47,0,52 chr2 96115238 . CTCCTCCTCT C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:153:100,53:0.346405:50,0,58 chr2 96115518 . C G 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:57:29,28:0.491228:44,0,53 chr2 96124048 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:116:59,56:0.482759:52,0,45 chr2 96129869 . T G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:95:50,45:0.473684:45,0,56 chr2 96129975 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:67:31,36:0.537313:54,0,55 chr2 96130118 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:26:1,24:0.923077:48,28,0 chr2 96132771 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:45,42:0.482759:49,0,53 chr2 96267936 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:68:31,37:0.544118:52,0,52 chr2 96278815 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:74:43,31:0.418919:48,0,58 chr2 96500467 . A G 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:81:30,51:0.62963:44,0,46 chr2 96604358 . C T 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:75:41,34:0.453333:43,0,46 chr2 96686103 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:64:0,64:1:49,27,0 chr2 96687723 . G GGGGAA 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:24,38:0.612903:54,0,54 chr2 96687988 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:108:52,56:0.518519:44,0,48 chr2 96691371 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:27,26:0.490566:48,0,52 chr2 96693499 . C A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:36:14,22:0.611111:48,0,49 chr2 96693627 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:86:34,52:0.604651:57,0,54 chr2 96700351 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:119:61,58:0.487395:51,0,56 chr2 96773264 . A T 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:71:49,21:0.295775:33,0,52 chr2 96816803 . G A 5.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:2:2:0,2:1:1,1,0 chr2 96816920 . C T 9.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:2:0,2:1:6,1,0 chr2 96825015 . G C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:19:10,8:0.421053:45,0,57 chr2 96828140 . T C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:67:38,28:0.41791:48,0,53 chr2 96842345 . G C 15.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:43:32,9:0.209302:15,0,49 chr2 96863659 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:39:20,19:0.487179:48,0,53 chr2 96895064 . G A 29.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:186:121,65:0.349462:29,0,47 chr2 96898008 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:48:20,28:0.583333:55,0,40 chr2 96902716 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:33:14,19:0.575758:52,0,55 chr2 96921312 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:17:0,17:1:59,41,0 chr2 96947879 . T C 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:71:42,27:0.380282:33,0,51 chr2 96951403 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:64:35,29:0.453125:54,0,53 chr2 96951490 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:62:33,29:0.467742:53,0,53 chr2 96972168 . T C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:99:60,39:0.393939:44,0,54 chr2 96972301 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:20,19:0.487179:50,0,57 chr2 97118558 . C A 19.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:5:1,4:0.8:19,0,36 chr2 97183482 . T C 10.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:8:6,2:0.25:10,0,43 chr2 97185332 . A G 26.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:11:5,6:0.545455:26,0,37 chr2 97194750 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:10:5,4:0.4:44,0,55 chr2 97196659 . G A 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:18:11,7:0.388889:36,0,63 chr2 97198551 . T C 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:16:8,8:0.5:37,0,56 chr2 97198597 . C T 3.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:14:6,8:0.571429:0,0,45 chr2 97198637 . G T 16.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:16:9,7:0.4375:16,0,42 chr2 97204059 . A C 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:12:10,2:0.166667:1,0,40 chr2 97207893 . A T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:18:10,8:0.444444:46,0,56 chr2 97211555 . C A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:25:15,10:0.4:43,0,52 chr2 97211741 . G A 26.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:5:3,2:0.4:26,0,51 chr2 97241501 . A G 7.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:5:3,2:0.4:6,0,21 chr2 97547464 . A T 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:76:51,25:0.328947:38,0,57 chr2 97547557 . C T 34.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:33:15,18:0.545455:34,0,48 chr2 97547558 . T C 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:32:14,18:0.5625:33,0,53 chr2 97547621 . T A 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:14:8,6:0.428571:32,0,49 chr2 97547721 . C G 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:21:12,9:0.428571:29,0,54 chr2 97553120 . G T 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:10:7,3:0.3:28,0,40 chr2 97553279 . A C 29.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:5:3,2:0.4:29,0,55 chr2 97556905 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:11,7:0.388889:43,0,55 chr2 97556906 . A G 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:18:11,7:0.388889:35,0,49 chr2 97560661 . T G 12.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:14:11,3:0.214286:12,0,50 chr2 97589725 . C G 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:29:18,11:0.37931:42,0,46 chr2 97656827 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:23:9,14:0.608696:47,0,53 chr2 97657198 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:60:31,29:0.483333:51,0,47 chr2 97658064 . G C 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:64:45,19:0.296875:35,0,53 chr2 97669772 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:76:39,37:0.486842:51,0,46 chr2 97701222 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:100:56,44:0.44:47,0,51 chr2 97701308 . C A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:23,19:0.452381:44,0,66 chr2 97713589 . C A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:66:34,32:0.484848:52,0,56 chr2 97713755 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:56:27,29:0.517857:47,0,55 chr2 97723901 . A C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:66:39,27:0.409091:51,0,50 chr2 97724732 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:128:76,52:0.40625:49,0,49 chr2 97725265 . C G 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:182:104,78:0.428571:37,0,52 chr2 97733638 . A C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:16,26:0.619048:51,0,46 chr2 97760571 . G A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:22:13,9:0.409091:36,0,50 chr2 97797318 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:9,9:0.5:49,0,58 chr2 97995531 . G T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:44:16,28:0.636364:54,0,49 chr2 98087196 . G T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:81:44,37:0.45679:44,0,53 chr2 98216982 . A ACC 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:24:0,4:0.166667:33,0,35 chr2 98216982 . A ACCC 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:24:0,7:0.291667:33,1,32 chr2 98216982 . A ACCCC 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:24:0,10:0.416667:33,1,16 chr2 98216986 . G C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:23:0,23:1:44,25,0 chr2 98228211 . C G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:8,20:0.714286:53,0,41 chr2 98236710 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:62:30,32:0.516129:49,0,51 chr2 98240418 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:35:0,35:1:50,37,0 chr2 98245634 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:61:0,61:1:54,47,0 chr2 98256199 . C CT 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:37:7,26:0.702703:51,34,0 chr2 98270653 . G C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:22:9,13:0.590909:50,0,55 chr2 98312031 . G A 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:88:0,87:0.988636:60,45,0 chr2 98377671 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:46:27,19:0.413043:47,0,56 chr2 98396739 . C T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:78:49,28:0.358974:45,0,57 chr2 98544045 . GCA G 12.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:32:10,21:0.65625:12,0,30 chr2 98546060 . C T 15.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:61:46,15:0.245902:15,0,46 chr2 98555781 . A G 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:98:57,40:0.408163:38,0,50 chr2 98577033 . C T 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:123:78,45:0.365854:35,0,55 chr2 98600749 . G C 7.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:35:30,5:0.142857:6,0,37 chr2 98609710 . T A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:29:13,16:0.551724:58,0,64 chr2 98618123 . ATT A 14.1 PASS . GT:GQ:DP:AD:VAF:PL 0/0:4:29:12,2:0.0689655:11,1,36 chr2 98618123 . A ATTTAT 14.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:29:12,12:0.413793:11,0,36 chr2 98618138 . T A 24.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:31:20,9:0.290323:24,0,46 chr2 98658190 . T C 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:21:12,9:0.428571:42,0,57 chr2 99109016 . A AT 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:45:2,43:0.955556:53,46,0 chr2 99109580 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:9:0,9:1:44,22,0 chr2 99110928 . TA T 21.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:5:0,4:0.8:20,5,0 chr2 99118589 . G T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:24:0,24:1:54,41,0 chr2 99141557 . G GCGCAGGCGCACGCCCA 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:52:2,39:0.75:46,32,0 chr2 99154805 . G C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:59:0,59:1:55,37,0 chr2 99154809 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:59:0,59:1:58,40,0 chr2 99155070 . C T 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:25:0,25:1:61,47,0 chr2 99162522 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:70:0,70:1:59,38,0 chr2 99162668 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:33:0,33:1:49,27,0 chr2 99167829 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:19:0,19:1:50,36,0 chr2 99167844 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:15:5,10:0.666667:55,0,56 chr2 99188179 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:0,25:1:51,39,0 chr2 99195607 . G A 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:60:0,60:1:58,41,0 chr2 99243491 . CAGAT C 37.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:16:29:0,25:0.862069:37,19,47 chr2 99243491 . C CAGAT 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:29:0,3:0.103448:37,19,39 chr2 99404407 . T C 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:34:24,10:0.294118:35,0,55 chr2 99479782 . T A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:21:8,13:0.619048:45,0,48 chr2 99601618 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:42:0,42:1:46,27,0 chr2 99672469 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:92:0,92:1:48,39,0 chr2 100142616 . T C 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:103:51,52:0.504854:46,0,51 chr2 100299310 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:78:0,78:1:59,46,0 chr2 100299844 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:54:0,54:1:55,40,0 chr2 100299853 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:48:23,25:0.520833:50,0,56 chr2 100300647 . C T 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:53:37,16:0.301887:38,0,58 chr2 100322019 . C G 34.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:30:21,9:0.3:34,0,56 chr2 100393620 . G C 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:90:59,31:0.344444:38,0,47 chr2 100397901 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:30,32:0.516129:53,0,54 chr2 100480498 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:66:0,66:1:52,38,0 chr2 100569626 . C T 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:58:0,58:1:52,37,0 chr2 100904711 . ATT A 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:55:13,20:0.363636:28,0,52 chr2 100925336 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:24:0,24:1:59,48,0 chr2 100974842 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:81:0,81:1:55,42,0 chr2 100982609 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:50:0,50:1:57,47,0 chr2 100982625 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:62:0,62:1:55,48,0 chr2 100993365 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:47,30:0.38961:43,0,57 chr2 101002821 . C G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:51:27,23:0.45098:40,0,53 chr2 101008009 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:34,28:0.451613:46,0,58 chr2 101019076 . C T 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:14,10:0.416667:43,0,56 chr2 101022426 . A G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:74:36,38:0.513514:56,0,55 chr2 101028393 . G A 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:126:89,37:0.293651:30,0,49 chr2 101040264 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:100:54,46:0.46:51,0,55 chr2 101109965 . T C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:55:29,26:0.472727:43,0,59 chr2 101110014 . C T 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:10,9:0.473684:41,0,53 chr2 101253126 . G T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:77:33,44:0.571429:45,0,48 chr2 101257980 . C T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:25:11,14:0.56:44,0,49 chr2 101265087 . A T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:22:11,10:0.454545:45,0,50 chr2 101281760 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:64,43:0.401869:48,0,54 chr2 101281950 . G C 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:107:0,105:0.981308:54,38,0 chr2 101294923 . A G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:13:7,6:0.461538:52,0,57 chr2 101350884 . C T 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:29:0,29:1:59,47,0 chr2 101383748 . G A 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:26:10,16:0.615385:57,0,57 chr2 101402416 . G A 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:26:10,16:0.615385:57,0,57 chr2 101402446 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:65:40,25:0.384615:52,0,59 chr2 101413086 . G A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:12,18:0.6:50,0,48 chr2 101422387 . T A 64.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:53:0,53:1:64,47,0 chr2 101450621 . T C 37.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:8:0,8:1:37,15,0 chr2 101452410 . T A 35.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:18:11,7:0.388889:35,0,50 chr2 101474613 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:43:0,43:1:58,44,0 chr2 102171949 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:11:6,5:0.454545:43,0,54 chr2 102367819 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:16:8,8:0.5:51,0,52 chr2 102384942 . C T 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:27:20,7:0.259259:39,0,61 chr2 102423787 . T TG 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:17:10,7:0.411765:52,0,65 chr2 102423789 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:16:10,6:0.375:50,0,59 chr2 102443153 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:9:0,9:1:44,27,0 chr2 102478945 . G A 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:90:49,41:0.455556:42,0,51 chr2 102519850 . T C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:46:27,19:0.413043:52,0,51 chr2 102519987 . T G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:27:10,17:0.62963:49,0,59 chr2 102524988 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:26:9,17:0.653846:54,0,53 chr2 102525192 . G C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:24:10,14:0.583333:56,0,50 chr2 102532641 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:63:35,28:0.444444:47,0,52 chr2 102532703 . A G 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:10,9:0.473684:41,0,65 chr2 102532723 . A G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:14:9,5:0.357143:42,0,63 chr2 102718510 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:26:0,26:1:53,43,0 chr2 102718982 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:90:49,41:0.455556:45,0,62 chr2 102726816 . G GA 22.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:31:4,17:0.548387:22,21,0 chr2 102814945 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:27,42:0.608696:49,0,48 chr2 102932971 . A T 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:85:64,20:0.235294:34,0,45 chr2 104855597 . T C 22.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:4:0,4:1:20,3,0 chr2 105038258 . C T 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:32:17,15:0.46875:41,0,51 chr2 105092565 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:35:0,35:1:53,48,0 chr2 105092604 . T C 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:17:10,7:0.411765:40,0,52 chr2 105269504 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:64:0,64:1:56,37,0 chr2 105308053 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:79:41,38:0.481013:49,0,52 chr2 105337452 . G C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:34:18,16:0.470588:53,0,68 chr2 105337481 . G GC 63.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:62:60:27,33:0.55:63,0,69 chr2 105337683 . G A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:112:60,51:0.455357:48,0,53 chr2 105361319 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:69:44,25:0.362319:47,0,59 chr2 106125683 . C T 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:44:0,44:1:59,38,0 chr2 106125721 . T A 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:23:0,23:1:57,45,0 chr2 106193161 . A G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:41:21,20:0.487805:42,0,47 chr2 106194271 . A G 35.8 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:8:0,6:0.75:33,18,0 chr2 106194271 . A T 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:8:0,2:0.25:33,18,15 chr2 106372359 . A G 39.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:11:0,11:1:39,27,0 chr2 106376496 . A G 33 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:3:0,3:1:32,13,0 chr2 106376507 . A AG 30.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:3:0,3:1:30,13,0 chr2 106391538 . TA T 20.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:16:0,15:0.9375:20,13,0 chr2 106415823 . T C 40.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:43:0,43:1:40,37,0 chr2 106415961 . A G 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:78:50,28:0.358974:33,0,50 chr2 106416037 . G A 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:19:11,8:0.421053:24,0,33 chr2 106424116 . T C 31.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:8:1,7:0.875:31,29,0 chr2 106424529 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:22:0,22:1:50,46,0 chr2 106425184 . G A 23.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:63:45,18:0.285714:23,0,51 chr2 106433148 . T C 17 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:20:15,5:0.25:16,0,34 chr2 106457045 . C T 4.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:33:27,6:0.181818:2,0,41 chr2 106468283 . A G 31.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:88:60,28:0.318182:31,0,46 chr2 106491238 . A G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:35:0,35:1:42,39,0 chr2 106502440 . T C 35.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:24:0,24:1:35,32,0 chr2 106502564 . G A 18.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:69:39,30:0.434783:18,0,42 chr2 106806732 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:112:55,56:0.5:52,0,55 chr2 106806939 . T G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:0,35:1:57,40,0 chr2 106825313 . G C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:77:39,38:0.493506:43,0,42 chr2 106844018 . T G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:13,15:0.535714:48,0,64 chr2 107827055 . C G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:94:0,94:1:51,48,0 chr2 107827111 . G A 41.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:52:0,52:1:41,37,0 chr2 107827135 . A C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:33:0,33:1:45,38,0 chr2 107838847 . G T 37.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:11:0,11:1:37,33,0 chr2 107859502 . A G 41.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:23:0,23:1:41,27,0 chr2 107862976 . G A 12.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:11:1,10:0.909091:11,6,0 chr2 107863031 . A T 20.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:5:2,2:0.4:17,0,0 chr2 107870874 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:39:0,39:1:45,40,0 chr2 107871370 . C T 40.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:15:0,15:1:40,42,0 chr2 107871373 . G C 45 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:14:0,14:1:44,38,0 chr2 107871445 . A G 18.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:4:0,4:1:18,21,0 chr2 107871510 . A G 15.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:2:0,2:1:15,15,0 chr2 107876336 . G A 35.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:60:0,60:1:35,41,0 chr2 107879979 . T A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:36:0,36:1:48,46,0 chr2 108247194 . A C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:51:0,51:1:59,45,0 chr2 108247311 . A C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:23:0,23:1:53,30,0 chr2 108259008 . AAAACTTGGTCAGGTGATGTTAT A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:18:0,17:0.944444:43,29,0 chr2 108260606 . T A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:54:0,54:1:56,47,0 chr2 108300758 . G A 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:39:13,26:0.666667:39,0,52 chr2 108305580 . T G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:32:17,15:0.46875:52,0,59 chr2 108378352 . C G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:49:0,49:1:57,41,0 chr2 108382341 . A AG 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:21:12,9:0.428571:39,0,53 chr2 108382342 . T A 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:21:11,10:0.47619:35,0,50 chr2 108387305 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:15,22:0.594595:47,0,53 chr2 108472948 . C G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:13:7,6:0.461538:49,0,55 chr2 108483021 . A G 26.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:5:3,2:0.4:26,0,42 chr2 108483116 . C G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:46,27,0 chr2 108507540 . T G 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:34:27,7:0.205882:38,0,61 chr2 108773007 . G A 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:53:0,53:1:60,43,0 chr2 108812690 . T A 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:20:0,20:1:53,36,0 chr2 108896865 . C A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:10,12:0.545455:46,0,50 chr2 108897198 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:68:39,29:0.426471:49,0,53 chr2 108906264 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:25:9,16:0.64:54,0,59 chr2 108906291 . CT C 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:27,17:0.386364:44,0,54 chr2 108910513 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:92:0,92:1:56,42,0 chr2 108910917 . A G 65.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:67:0,67:1:65,53,0 chr2 108923318 . G A 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:20,24:0.545455:45,0,49 chr2 108923457 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:42,60:0.576923:51,0,50 chr2 109129326 . TGGCCGGTCCCCGCCACGCA T 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:25:0,23:0.92:41,24,0 chr2 109129473 . C G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:25:12,13:0.52:46,0,54 chr2 109398853 . T C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:97:61,36:0.371134:42,0,56 chr2 109490556 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:14:6,8:0.571429:48,0,47 chr2 109564358 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:63:25,38:0.603175:57,0,56 chr2 109614615 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:30:0,30:1:52,41,0 chr2 109760643 . T C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:49:32,17:0.346939:41,0,48 chr2 110161744 . C T 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:55:36,19:0.345455:35,0,47 chr2 110165126 . C T 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:115:70,45:0.391304:43,0,46 chr2 110168405 . G GA 19 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:63:28,22:0.349206:18,0,46 chr2 110390750 . A G 9.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:112:78,34:0.303571:9,0,34 chr2 110610789 . C CGCCGCCGCT 28.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:17:0,17:1:28,15,0 chr2 110661849 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:49:24,25:0.510204:44,0,54 chr2 110839971 . G GGTTTGTTGTTGTTGTT 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:59:27,24:0.40678:51,0,62 chr2 110928212 . C T 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:65:45,20:0.307692:40,0,54 chr2 110995872 . G C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:16,22:0.578947:52,0,50 chr2 111002084 . G T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:71:1,70:0.985915:57,52,0 chr2 111016539 . G A 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:29:0,29:1:60,46,0 chr2 111116931 . T C 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:22,13:0.371429:44,0,51 chr2 111117052 . C T 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:23,21:0.477273:47,0,59 chr2 111122707 . G T 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:7:2,5:0.714286:36,0,36 chr2 111142368 . A T 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:39:26,12:0.307692:30,0,50 chr2 111150114 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:66:0,66:1:59,47,0 chr2 111778687 . G T 27 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:34:0,34:1:26,31,0 chr2 111824946 . G A 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:23:13,10:0.434783:40,0,51 chr2 111847725 . C T 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:17:9,8:0.470588:35,0,50 chr2 111847888 . T C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:14:0,14:1:43,25,0 chr2 111867998 . T C 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:16:10,6:0.375:37,0,55 chr2 111884089 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:124:61,63:0.508065:48,0,54 chr2 111947566 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:121:80,41:0.338843:48,0,62 chr2 111947580 . T C 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:90:60,30:0.333333:41,0,47 chr2 111947608 . G T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:66:47,19:0.287879:48,0,63 chr2 111968107 . A ATGTGTG 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:68:22,28:0.411765:39,0,43 chr2 111982796 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:46,28:0.378378:46,0,53 chr2 111983019 . GA G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:26,30:0.535714:45,0,52 chr2 111983021 . T G 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:56:26,30:0.535714:39,0,50 chr2 111994351 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:171:101,69:0.403509:52,0,58 chr2 111995520 . A C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:50:30,20:0.4:47,0,55 chr2 111996204 . TA T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:103:53,50:0.485437:47,0,56 chr2 111997251 . G T 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:52:41,11:0.211538:7,0,39 chr2 111997424 . A G 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:184:103,81:0.440217:37,0,54 chr2 112008396 . A G 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:92:49,42:0.456522:45,0,50 chr2 112009906 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:66:39,27:0.409091:50,0,63 chr2 112010247 . A G 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:71:50,21:0.295775:40,0,56 chr2 112013193 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:27:19,8:0.296296:48,0,76 chr2 112013221 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:45:34,11:0.244444:48,0,68 chr2 112013222 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:46:34,12:0.26087:48,0,64 chr2 112039342 . T G 15.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:32:27,4:0.125:15,0,32 chr2 112089587 . C T 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:22:12,10:0.454545:47,0,60 chr2 112098588 . C A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:31,17:0.354167:46,0,53 chr2 112187611 . T A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:74:0,74:1:54,46,0 chr2 112238491 . T C 17.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:21:17,4:0.190476:17,0,39 chr2 112324673 . CT C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:19:8,11:0.578947:46,0,54 chr2 112331690 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:25,20:0.444444:47,0,59 chr2 112332470 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:45,37:0.451219:47,0,57 chr2 112547573 . G C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:81:47,34:0.419753:47,0,51 chr2 112550939 . T A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:43,26:0.376812:46,0,52 chr2 112551045 . C T 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:22:16,6:0.272727:35,0,48 chr2 112551896 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:47,33:0.4125:47,0,51 chr2 112552620 . CT C 28.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:33:20,13:0.393939:28,0,48 chr2 112568704 . C G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:13,12:0.48:47,0,56 chr2 112568925 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:15,11:0.423077:49,0,51 chr2 112586470 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:167:98,69:0.413174:45,0,56 chr2 112588935 . A C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:30,25:0.454545:47,0,55 chr2 112647131 . G A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:70:33,37:0.528571:49,0,44 chr2 112722037 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:93:57,36:0.387097:53,0,56 chr2 112722168 . AC A 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:94:1,93:0.989362:57,42,0 chr2 112722776 . G A 34.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:89:61,28:0.314607:34,0,47 chr2 112725202 . A C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:52,32:0.380952:45,0,54 chr2 112726742 . G A 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:53:1,52:0.981132:61,51,0 chr2 112726776 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:30:0,30:1:57,36,0 chr2 112740989 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:70:33,37:0.528571:53,0,63 chr2 112755927 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:14,10:0.416667:50,0,58 chr2 112756248 . T C 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:74:0,74:1:59,39,0 chr2 112756582 . T A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:54:39,15:0.277778:49,0,60 chr2 112756603 . T C 30 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:47:39,8:0.170213:29,0,52 chr2 112762552 . G A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:56:27,29:0.517857:43,0,42 chr2 112775308 . G T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:15,11:0.423077:50,0,61 chr2 112779646 . C A 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:48:30,18:0.375:33,0,53 chr2 112832813 . G A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:34:22,12:0.352941:39,0,51 chr2 112911226 . G C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:118:73,45:0.381356:52,0,47 chr2 112911266 . A G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:40,22:0.354839:46,0,57 chr2 112913132 . G GT 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:61:35,26:0.42623:48,0,54 chr2 112917132 . C G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:20:10,10:0.5:46,0,58 chr2 112917144 . A G 59 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:21:11,10:0.47619:58,0,61 chr2 112917692 . C T 35.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:81:55,26:0.320988:35,0,43 chr2 112918642 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:84:50,34:0.404762:49,0,59 chr2 112918804 . G A 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:46:28,18:0.391304:38,0,55 chr2 113005998 . A G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:83:1,82:0.987952:57,48,0 chr2 113028150 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:39:0,38:0.974359:55,44,0 chr2 113074735 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:44:24,20:0.454545:52,0,57 chr2 113074756 . C A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:66:41,25:0.378788:48,0,62 chr2 113132727 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:66:0,66:1:52,43,0 chr2 113183104 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:81:45,36:0.444444:48,0,51 chr2 113183262 . G C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:109:61,47:0.431193:50,0,55 chr2 113184908 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:21:10,11:0.52381:53,0,57 chr2 113185326 . A C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:55:28,27:0.490909:49,0,52 chr2 113185486 . T G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:44:19,25:0.568182:50,0,51 chr2 113185893 . A G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:50:26,24:0.48:40,0,53 chr2 113198794 . G C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:154:87,67:0.435065:46,0,55 chr2 113199244 . C G 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:15:10,5:0.333333:36,0,54 chr2 113216055 . G A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:58:37,21:0.362069:41,0,49 chr2 113236840 . G T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:0,58:1:57,44,0 chr2 113242881 . C A 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:70:0,70:1:57,38,0 chr2 113246660 . G A 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:73:0,73:1:58,49,0 chr2 113263271 . T G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:45:0,45:1:60,45,0 chr2 113627286 . T C 16.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:108:60,48:0.444444:16,0,47 chr2 113627302 . G C 21.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:109:62,47:0.431193:21,0,47 chr2 113723235 . A AAAC 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:49,32,0 chr2 113731675 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:24:16,8:0.333333:40,0,55 chr2 113734558 . C T 41.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:6:0,6:1:41,17,0 chr2 113735738 . C A 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:11:0,11:1:52,29,0 chr2 113755809 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:53:0,53:1:56,41,0 chr2 115739903 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:19:0,19:1:56,38,0 chr2 115753241 . G C 27.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:41:31,10:0.243902:27,0,46 chr2 115768384 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:49:0,49:1:56,42,0 chr2 115777346 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:28:14,14:0.5:53,0,57 chr2 115791244 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:15:0,15:1:47,28,0 chr2 115836119 . GAT G 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:47:16,27:0.574468:40,0,46 chr2 115842351 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:40:1,39:0.975:54,44,0 chr2 117814895 . A C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:71:41,30:0.422535:45,0,49 chr2 117817639 . C G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:73:49,24:0.328767:43,0,53 chr2 117821115 . TA T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:15:0,15:1:56,40,0 chr2 117826364 . C T 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:114:69,45:0.394737:36,0,52 chr2 117835604 . C T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:42:23,19:0.452381:47,0,53 chr2 117836816 . C T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:18:10,8:0.444444:50,0,63 chr2 117931178 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:40:0,40:1:54,42,0 chr2 117946902 . T G 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:40:0,40:1:58,42,0 chr2 117946927 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:33:20,13:0.393939:47,0,55 chr2 117949303 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:30:0,30:1:57,44,0 chr2 117973997 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:72:30,42:0.583333:53,0,45 chr2 117995521 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:36:19,17:0.472222:53,0,61 chr2 118013990 . C A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:91:46,45:0.494505:48,0,52 chr2 118014087 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:38:0,38:1:51,40,0 chr2 118014106 . TGCC T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:7,18:0.692308:45,0,64 chr2 118108238 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:12:6,6:0.5:41,0,61 chr2 118978209 . A G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:82:45,37:0.451219:49,0,47 chr2 118978404 . G C 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:35:17,18:0.514286:46,0,54 chr2 118981487 . T C 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:27:19,8:0.296296:34,0,57 chr2 118981606 . T C 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:50:37,13:0.26:22,0,49 chr2 118991901 . T G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:24:0,24:1:54,39,0 chr2 118994421 . T C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:69:44,25:0.362319:43,0,50 chr2 119157556 . CG C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:47,40,0 chr2 119157673 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:37,32:0.463768:50,0,47 chr2 119158099 . G T 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:111:66,45:0.405405:44,0,53 chr2 119158174 . G T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:57:33,24:0.421053:51,0,60 chr2 119230989 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:117:66,51:0.435897:50,0,52 chr2 119257409 . A G 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:28:0,28:1:59,48,0 chr2 119302506 . T C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:33:21,12:0.363636:46,0,47 chr2 119321202 . T C 32.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:3:0,3:1:30,0,2 chr2 119367453 . A G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:88:1,87:0.988636:54,43,0 chr2 119431857 . G C 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:18:11,7:0.388889:40,0,55 chr2 119437075 . A AGTGTGC 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:95:53,39:0.410526:57,0,62 chr2 119441564 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:40,35:0.466667:45,0,57 chr2 119452113 . A G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:46:23,23:0.5:43,0,50 chr2 119473422 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:43:26,17:0.395349:47,0,56 chr2 119495504 . A G 20.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:78:58,20:0.25641:20,0,52 chr2 119604831 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:0,31:1:58,44,0 chr2 119605321 . T A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:20:0,20:1:56,44,0 chr2 119608481 . G GT 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:31:2,21:0.677419:49,42,0 chr2 119611724 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:0,31:1:51,44,0 chr2 119630836 . G A 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:76:0,76:1:59,46,0 chr2 119647053 . AT A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:37:5,22:0.594595:48,36,0 chr2 119655256 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:30:0,30:1:53,34,0 chr2 119680947 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:67:0,67:1:50,39,0 chr2 119681120 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:78:0,78:1:56,44,0 chr2 119681654 . C G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:94:0,93:0.989362:59,44,0 chr2 119760017 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:31,26:0.45614:47,0,52 chr2 120073239 . A G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:25:17,8:0.32:40,0,54 chr2 120127734 . G A 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:51:32,19:0.372549:38,0,50 chr2 120131597 . G C 8.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:59:39,19:0.322034:7,0,51 chr2 120131599 . C CT 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:59:23,32:0.542373:30,0,40 chr2 120143160 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:25:6,19:0.76:53,0,46 chr2 120161009 . A C 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:14:7,7:0.5:45,0,50 chr2 120222852 . G C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:51:0,51:1:59,43,0 chr2 120278809 . T G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:31:0,31:1:57,51,0 chr2 120278810 . T A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:30:0,30:1:51,41,0 chr2 120285827 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:14:0,14:1:49,32,0 chr2 120344958 . T A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:55:22,32:0.581818:56,0,53 chr2 120735869 . C T 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:10:2,8:0.8:41,0,23 chr2 120918908 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:132:0,132:1:52,46,0 chr2 120955446 . C G 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:39:0,38:0.974359:52,43,0 chr2 120955454 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:40:1,39:0.975:46,44,0 chr2 120955465 . T C 40.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:23:0,23:1:40,43,0 chr2 120968871 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:167:1,166:0.994012:56,40,0 chr2 120971914 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:34:0,34:1:45,40,0 chr2 120972110 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:22:0,22:1:57,46,0 chr2 120982929 . C T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:95:0,95:1:60,47,0 chr2 120986649 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:46:0,46:1:56,41,0 chr2 120989380 . G T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:53:0,53:1:56,41,0 chr2 120989830 . G A 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:52:0,52:1:62,46,0 chr2 120989853 . A G 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:63:0,63:1:59,43,0 chr2 121224374 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:81:0,81:1:57,44,0 chr2 121237575 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:16,13:0.448276:45,0,50 chr2 121239544 . G A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:16,19:0.542857:54,0,53 chr2 121239754 . C G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:59:34,25:0.423729:48,0,57 chr2 121240636 . C T 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:118:77,41:0.347458:41,0,54 chr2 121247020 . C G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:36:0,36:1:59,46,0 chr2 121249124 . G C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:15:6,9:0.6:51,0,53 chr2 124434491 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:41:0,41:1:54,38,0 chr2 126686016 . A C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:78:50,28:0.358974:56,0,61 chr2 126686051 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:72:43,29:0.402778:50,0,61 chr2 126686195 . G T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:95:45,50:0.526316:54,0,51 chr2 126686382 . T G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:98:55,43:0.438776:46,0,39 chr2 126696088 . A C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:76:36,40:0.526316:51,0,57 chr2 126899088 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:41:18,23:0.560976:50,0,58 chr2 126899234 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:19,23:0.547619:52,0,56 chr2 126899281 . G A 64.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:64:33:17,16:0.484848:64,0,71 chr2 126899285 . C T 59.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:30:16,14:0.466667:59,0,70 chr2 126899632 . C T 59.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:48:21,27:0.5625:59,0,60 chr2 126899645 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:42:23,19:0.452381:54,0,62 chr2 126901065 . T A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:45:22,23:0.511111:45,0,54 chr2 126901833 . G A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:72:44,28:0.388889:39,0,52 chr2 126901955 . G A 59.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:218:127,91:0.417431:59,0,58 chr2 127058963 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:83:47,36:0.433735:51,0,53 chr2 127059167 . G T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:111:2,109:0.981982:48,37,0 chr2 127069056 . A G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:55:0,55:1:54,40,0 chr2 127193328 . A T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:36:16,19:0.527778:49,0,47 chr2 127193421 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:8,16:0.666667:50,0,44 chr2 127193519 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:65:34,31:0.476923:53,0,48 chr2 127193882 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:40:26,14:0.35:54,0,58 chr2 127193883 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:37:24,13:0.351351:55,0,60 chr2 127195478 . A C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:54:29,25:0.462963:44,0,54 chr2 127219974 . G C 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:17:9,8:0.470588:41,0,45 chr2 127280968 . T C 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:50:33,17:0.34:36,0,52 chr2 127322230 . A G 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:30:22,8:0.266667:34,0,57 chr2 127418203 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:12:5,7:0.583333:47,0,50 chr2 127418286 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:73:46,27:0.369863:52,0,64 chr2 127418299 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:80:47,33:0.4125:56,0,58 chr2 127418464 . A T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:73:32,41:0.561644:48,0,57 chr2 127423296 . G T 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:78:0,78:1:57,44,0 chr2 127423452 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:97:0,97:1:51,43,0 chr2 127427194 . T C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:127:74,53:0.417323:47,0,54 chr2 127485886 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:44:17,27:0.613636:58,0,58 chr2 127495995 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:78:45,33:0.423077:52,0,57 chr2 127564195 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:95:52,43:0.452632:44,0,57 chr2 127581881 . G T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:21,15:0.416667:48,0,57 chr2 127588385 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:37:19,18:0.486486:50,0,63 chr2 127605955 . G GC 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:41:0,39:0.951219:52,37,0 chr2 127608697 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:85:47,38:0.447059:49,0,51 chr2 127609517 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:28,23:0.45098:50,0,51 chr2 127612321 . A G 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:115:65,50:0.434783:39,0,47 chr2 127621988 . C G 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:57:37,20:0.350877:44,0,55 chr2 127624233 . C T 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:57:22,35:0.614035:58,0,55 chr2 127628545 . TGGGTG T 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:36:5,30:0.833333:39,0,44 chr2 127631768 . C T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:63:26,37:0.587302:56,0,56 chr2 127635113 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:18,37:0.672727:48,0,45 chr2 127635686 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:12,11:0.478261:48,0,62 chr2 127637302 . C CT 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:18,22:0.55:51,0,56 chr2 127639232 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:28:11,17:0.607143:52,0,47 chr2 127641839 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:107:57,50:0.46729:53,0,55 chr2 127643033 . C T 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:99:56,42:0.424242:35,0,45 chr2 127643516 . A G 65.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:100:0,98:0.98:65,49,0 chr2 127648146 . T C 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:71:0,71:1:61,47,0 chr2 127653144 . G A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:94:0,94:1:55,45,0 chr2 127654376 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:23:0,23:1:50,40,0 chr2 127654879 . G A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:150:91,59:0.393333:42,0,50 chr2 127701618 . G T 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:12:6,6:0.5:33,0,51 chr2 127701621 . G C 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:12:6,6:0.5:40,0,49 chr2 127701640 . C G 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:5:1,4:0.8:32,0,39 chr2 127701985 . C T 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:9:3,6:0.666667:36,0,40 chr2 127717313 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:20:11,9:0.45:49,0,64 chr2 127738071 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:56:34,22:0.392857:43,0,53 chr2 127769005 . T TTAAA 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:26:2,22:0.846154:43,27,0 chr2 128113234 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:49:0,49:1:55,41,0 chr2 128120440 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:41:0,41:1:47,38,0 chr2 128176826 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:51:0,51:1:51,49,0 chr2 128178426 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:27:0,27:1:59,50,0 chr2 128178597 . TATG T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:27:0,27:1:57,41,0 chr2 128182121 . A G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:17:2,15:0.882353:43,0,11 chr2 128182225 . C T 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:45:32,13:0.288889:37,0,54 chr2 128182243 . G A 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:41:0,41:1:60,56,0 chr2 128318387 . T C 35.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:65:3,62:0.953846:35,46,0 chr2 129980590 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:60:31,29:0.483333:44,0,36 chr2 130074719 . T A 23.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:113:53,60:0.530973:22,13,0 chr2 130075586 . G A 27.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:19:1,18:0.947368:27,27,0 chr2 130155193 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:126:59,67:0.531746:51,0,51 chr2 130183492 . T C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:51,39,0 chr2 130191838 . G T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:82:0,82:1:46,35,0 chr2 130193975 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:82:0,82:1:48,45,0 chr2 130193993 . G A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:74:1,72:0.972973:46,39,0 chr2 130346476 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:68:35,33:0.485294:49,0,57 chr2 130462929 . C T 11.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:2:0,2:1:10,7,0 chr2 130463255 . G A 14.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:2:0,2:1:13,16,0 chr2 130463291 . T A 15.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:2:0,2:1:14,9,0 chr2 130463529 . T C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:32:1,31:0.96875:41,33,0 chr2 130463597 . C T 37.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:93:0,93:1:37,37,0 chr2 130463872 . G A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:15:0,15:1:36,34,0 chr2 130463926 . G A 32.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:4:0,4:1:32,23,0 chr2 130508957 . C A 38.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:72:1,69:0.958333:38,28,0 chr2 130620134 . A G 35.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:5:0,5:1:35,20,0 chr2 130730100 . A C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:67:0,67:1:58,40,0 chr2 130763090 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:89:0,89:1:59,40,0 chr2 130914698 . T C 65.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:87:0,87:1:65,51,0 chr2 130916129 . G A 64.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:107:0,107:1:64,45,0 chr2 130931014 . G A 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:39:0,39:1:57,42,0 chr2 130931210 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:60:0,60:1:50,35,0 chr2 131011664 . G A 59.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:63:29,34:0.539683:59,0,59 chr2 131041990 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:22:11,11:0.5:48,0,60 chr2 131044472 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:90:54,36:0.4:51,0,53 chr2 131071987 . A ACACC 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:14,17:0.548387:51,0,55 chr2 131218699 . G C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:22:0,22:1:42,29,0 chr2 131353255 . G T 32 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:4:0,4:1:31,18,0 chr2 131353289 . G C 17.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:2:0,2:1:17,24,0 chr2 131353548 . G A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:11:0,11:1:43,37,0 chr2 131353550 . T C 43 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:11:0,11:1:42,48,0 chr2 131353554 . G T 38.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:6:0,6:1:38,33,0 chr2 131362928 . C CT 65.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:35:0,35:1:65,50,0 chr2 131472147 . T C 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:86:65,21:0.244186:34,0,54 chr2 131480410 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:89:62,27:0.303371:43,0,45 chr2 131490806 . T G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:110:52,57:0.518182:43,0,48 chr2 131492027 . G A 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:74:37,36:0.486486:32,0,33 chr2 131492032 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:74:40,34:0.459459:44,0,47 chr2 131492494 . G GGGAGCGGCA 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:14:9,5:0.357143:46,0,63 chr2 131492520 . T G 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:12:9,3:0.25:35,0,55 chr2 131530251 . C T 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:99:35,62:0.626263:42,0,29 chr2 131530529 . T C 20.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:88:74,14:0.159091:20,0,37 chr2 131530789 . T C 7.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:49:41,8:0.163265:6,0,23 chr2 131532826 . G A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:50:23,27:0.54:40,0,40 chr2 132317065 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:22:11,11:0.5:40,0,45 chr2 132318019 . G A 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:74:46,28:0.378378:39,0,50 chr2 132318236 . G A 31.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:93:38,55:0.591398:31,0,47 chr2 132417191 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:99:54,45:0.454545:51,0,51 chr2 132417426 . A G 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:103:66,37:0.359223:41,0,56 chr2 132732028 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:66:0,66:1:59,44,0 chr2 132781993 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:46:15,31:0.673913:52,0,49 chr2 132783534 . T A 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:85:53,32:0.376471:43,0,50 chr2 132783871 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:32:19,13:0.40625:45,0,59 chr2 132783881 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:25,14:0.358974:48,0,57 chr2 132784441 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:64:32,32:0.5:55,0,58 chr2 132785001 . C T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:39:25,14:0.358974:49,0,59 chr2 132796715 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:76:39,37:0.486842:51,0,53 chr2 132860647 . A G 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:31:0,31:1:62,52,0 chr2 134456688 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:67:35,31:0.462687:49,0,53 chr2 134492781 . G C 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:56:37,19:0.339286:37,0,56 chr2 134713165 . A T 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:31:21,10:0.322581:37,0,58 chr2 134919901 . A AGTTT 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:32:15,11:0.34375:56,0,64 chr2 134936809 . C T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:16:6,10:0.625:55,0,62 chr2 134942581 . A T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:59:24,35:0.59322:57,0,56 chr2 134952752 . A G 29.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:10:7,3:0.3:29,0,54 chr2 134953946 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:47:21,26:0.553191:49,0,52 chr2 134954087 . G A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:84:48,36:0.428571:43,0,51 chr2 134983306 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:39,36:0.48:47,0,48 chr2 134987822 . G A 13.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:42:35,7:0.166667:13,0,43 chr2 134987975 . C T 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:31:23,8:0.258065:38,0,57 chr2 134988152 . A G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:44,31:0.413333:45,0,52 chr2 135023465 . C T 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:64:43,21:0.328125:37,0,54 chr2 135126596 . A G 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:96:67,29:0.302083:31,0,51 chr2 135153852 . T C 19.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:121:87,34:0.280992:19,0,40 chr2 135207806 . T C 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:38:23,15:0.394737:45,0,59 chr2 135230557 . T A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:25,9:0.264706:51,0,56 chr2 135230616 . G A 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:52:43,9:0.173077:35,0,56 chr2 135230665 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:73:53,20:0.273973:42,0,58 chr2 135230846 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:34:21,13:0.382353:45,0,55 chr2 135349942 . C G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:13,9:0.409091:45,0,56 chr2 135621624 . GT G 24 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:16:6,9:0.5625:23,0,43 chr2 135649909 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:27,36:0.571429:52,0,52 chr2 135652004 . A C 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:74:29,45:0.608108:54,0,54 chr2 135754304 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:26:12,14:0.538462:54,0,64 chr2 135769873 . G GTGAT 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:13:3,10:0.769231:51,0,44 chr2 135788274 . C G 67.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:60:82:0,82:1:67,60,0 chr2 135788540 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:151:76,75:0.496689:43,0,51 chr2 135789497 . A G 29.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:120:84,36:0.3:29,0,51 chr2 135790546 . G C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:20:0,20:1:53,43,0 chr2 135790599 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:58:0,58:1:59,48,0 chr2 135790622 . G A 66.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:69:0,69:1:66,50,0 chr2 135797914 . T C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:134:75,59:0.440298:44,0,52 chr2 135798089 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:189:116,71:0.375661:52,0,63 chr2 135800587 . C T 17.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:115:78,37:0.321739:17,0,44 chr2 135803987 . G A 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:109:0,109:1:63,49,0 chr2 135804902 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:125:67,58:0.464:49,0,54 chr2 135810063 . A G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:47:0,47:1:60,53,0 chr2 135812278 . C A 29.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:65:48,17:0.261538:29,0,52 chr2 135813043 . A T 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:46:30,15:0.326087:38,0,58 chr2 135817629 . G T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:71:36,35:0.492958:51,0,54 chr2 135817964 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:91:0,91:1:58,47,0 chr2 135823784 . T G 63.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:70:0,70:1:63,51,0 chr2 135832988 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:71:37,34:0.478873:49,0,57 chr2 135836588 . G A 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:64,43:0.401869:47,0,56 chr2 135851076 . G A 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:37:25,12:0.324324:39,0,48 chr2 135856685 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:72:33,39:0.541667:54,0,53 chr2 135856896 . G C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:34:14,20:0.588235:55,0,58 chr2 135985369 . T C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:91:44,47:0.516484:58,0,56 chr2 137242409 . G C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:24:0,24:1:55,45,0 chr2 137272701 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:19:0,19:1:53,34,0 chr2 137405821 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:19:0,19:1:50,33,0 chr2 137411588 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:20:0,20:1:47,31,0 chr2 137451061 . G T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:29:0,29:1:60,44,0 chr2 137964027 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:45:25,20:0.444444:46,0,58 chr2 137967432 . C T 68.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:47:0,47:1:68,53,0 chr2 138559364 . G T 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:30:20,10:0.333333:39,0,52 chr2 140234768 . C A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:46:19,27:0.586957:57,0,58 chr2 140234778 . T C 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:63:38,25:0.396825:50,0,66 chr2 140314950 . C G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:39:22,17:0.435897:49,0,57 chr2 140373126 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:47:26,21:0.446809:47,0,57 chr2 140442663 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:11,17:0.607143:43,0,46 chr2 140514684 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:51:26,25:0.490196:53,0,52 chr2 140514791 . GAA G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:11,14:0.5:48,0,64 chr2 140517007 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:22,20:0.47619:51,0,57 chr2 140525832 . T A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:17:9,8:0.470588:46,0,50 chr2 140526034 . T G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:33:0,33:1:56,47,0 chr2 140541113 . G C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:15:5,10:0.666667:48,0,48 chr2 140541748 . A G 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:22:14,8:0.363636:39,0,51 chr2 140715936 . A T 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:7:4,3:0.428571:37,0,47 chr2 140716833 . G GA 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:18,26:0.577778:52,0,49 chr2 140771023 . T C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:19:0,19:1:48,41,0 chr2 140776093 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:37:0,37:1:57,46,0 chr2 140813760 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:30:0,30:1:52,44,0 chr2 140840904 . A AT 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:28:0,28:1:58,47,0 chr2 140867841 . A C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:14,17:0.548387:50,0,63 chr2 140951850 . T G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:104:51,53:0.509615:55,0,53 chr2 140989680 . A T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:8,6:0.428571:49,0,59 chr2 140994023 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:117:74,42:0.358974:43,0,52 chr2 141015954 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:44:24,20:0.454545:46,0,52 chr2 141059052 . A G 38.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:11:0,11:1:38,31,0 chr2 141188380 . C T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:8:0,8:1:49,24,0 chr2 141810341 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:41,48:0.539326:48,0,51 chr2 142918572 . ATT A 17.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:21:1,12:0.571429:16,10,0 chr2 142985113 . T C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:36,31:0.462687:52,0,55 chr2 143029592 . C A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:35:0,35:1:56,42,0 chr2 143029705 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:31:0,31:1:58,47,0 chr2 143435582 . C CT 11.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:36:6,13:0.361111:10,8,0 chr2 144141992 . C A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:23:0,23:1:45,29,0 chr2 144177088 . A AG 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:20:0,20:1:52,47,0 chr2 147975979 . T TA 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:21:0,20:0.952381:48,31,0 chr2 148020668 . G C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:187:103,84:0.449198:45,0,51 chr2 148483088 . GT G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:93:14,65:0.698925:53,34,0 chr2 148489337 . C CT 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:43:22,17:0.395349:42,0,50 chr2 148502380 . G A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:53:24,29:0.54717:54,0,53 chr2 148691616 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:39:14,25:0.641026:53,0,48 chr2 148762645 . C A 34.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:12:2,10:0.833333:32,4,0 chr2 148875576 . CCCCCCACCCATCCCCGTG C 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:25:10,11:0.44:38,0,65 chr2 149024515 . AGTGT A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:87:3,74:0.850575:31,22,0 chr2 149161464 . C T 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:43:0,43:1:56,40,0 chr2 149571002 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:14:0,14:1:47,28,0 chr2 149572335 . C CAAAAAAAAAA 12.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:39:0,12:0.307692:11,0,30 chr2 149575863 . C G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:7:0,7:1:46,19,0 chr2 149575955 . G T 32.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:3:0,3:1:32,7,0 chr2 149576462 . C T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:80:0,80:1:58,45,0 chr2 149576614 . C G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:23:0,23:1:50,37,0 chr2 149579375 . C CAA 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:21:0,21:1:52,35,0 chr2 149587175 . C G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:70:0,69:0.985714:53,38,0 chr2 149587299 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:24:0,24:1:49,36,0 chr2 150471770 . GA G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:57:4,49:0.859649:58,47,0 chr2 150487464 . GA G 14.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:7:1,6:0.857143:12,0,3 chr2 151261443 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:29,24:0.45283:45,0,53 chr2 151275616 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:72:35,37:0.513889:49,0,51 chr2 151279000 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:7:3,4:0.571429:43,0,46 chr2 151282008 . T C 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:35:24,11:0.314286:38,0,50 chr2 151282979 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:19:9,10:0.526316:48,0,49 chr2 151370253 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:17,26:0.604651:57,0,56 chr2 151410558 . T G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:13,10:0.434783:49,0,52 chr2 151411383 . G GT 19.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:8:2,4:0.5:19,0,14 chr2 151433253 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:13:6,7:0.538462:46,0,51 chr2 151455056 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:46:30,15:0.326087:55,0,58 chr2 151463604 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:36:21,15:0.416667:49,0,58 chr2 151465581 . A T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:58:0,58:1:49,40,0 chr2 151474904 . C G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:9:0,9:1:41,23,0 chr2 151489980 . A C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:65:38,27:0.415385:47,0,52 chr2 151490465 . T C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:140:0,140:1:56,38,0 chr2 151492328 . T A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:25,20:0.444444:47,0,58 chr2 151492512 . G A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:85:53,32:0.376471:42,0,52 chr2 151496329 . C G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:36:26,10:0.277778:37,0,58 chr2 151508075 . G A 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:53:36,17:0.320755:40,0,56 chr2 151518286 . G A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:35:15,20:0.571429:51,0,53 chr2 151524654 . CTTT C 9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:18:2,2:0.111111:8,0,16 chr2 151525940 . C G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:48:26,22:0.458333:52,0,55 chr2 151531039 . T C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:95:61,34:0.357895:43,0,52 chr2 151531901 . AT A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:19,19:0.5:49,0,56 chr2 151538020 . T G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:21,13:0.382353:48,0,63 chr2 151547780 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:27,15:0.348837:46,0,56 chr2 151565562 . C G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:98:54,44:0.44898:43,0,56 chr2 151568419 . T TA 12.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:128:49,51:0.398438:12,0,9 chr2 151575797 . T C 19.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:46:34,12:0.26087:19,0,41 chr2 151579326 . C G 25.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:67:53,14:0.208955:25,0,31 chr2 151602602 . G A 16.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:3:0,3:1:16,21,0 chr2 151619424 . T G 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:85:63,22:0.258824:39,0,48 chr2 151619514 . C G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:93:60,33:0.354839:43,0,48 chr2 151633705 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:91:50,41:0.450549:51,0,54 chr2 151633944 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:34:0,34:1:53,40,0 chr2 151640012 . A G 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:87:58,29:0.333333:34,0,45 chr2 151643935 . C G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:72:33,38:0.527778:45,0,46 chr2 151655264 . A C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:20:13,7:0.35:52,0,56 chr2 151656478 . A T 27.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:55:35,18:0.327273:27,0,51 chr2 151663513 . A G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:74:43,31:0.418919:42,0,59 chr2 151664582 . C T 16.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:59:46,13:0.220339:16,0,49 chr2 151671058 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:226:131,95:0.420354:52,0,57 chr2 151674563 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:80:1,79:0.9875:54,42,0 chr2 151679984 . T A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:105:58,47:0.447619:51,0,54 chr2 151680837 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:13,18:0.580645:52,0,49 chr2 151695548 . A C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:11,8:0.421053:41,0,50 chr2 151717388 . A AGGC 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:27,13:0.325:50,0,65 chr2 151717467 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:76:47,29:0.381579:51,0,58 chr2 151828190 . A AC 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:56:20,34:0.607143:39,0,10 chr2 152120815 . T A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:27:13,14:0.518519:46,0,59 chr2 152132096 . C CT 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:19:0,19:1:46,40,0 chr2 152143823 . T A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:14:0,14:1:50,33,0 chr2 152144845 . GAT G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:36:17,19:0.527778:51,0,61 chr2 152521945 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:14,10:0.416667:44,0,51 chr2 152549080 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:6:0,6:1:44,18,0 chr2 152558715 . A AT 28.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:31:19,11:0.354839:28,0,34 chr2 152558720 . T TG 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:38:22,16:0.421053:38,0,39 chr2 152558730 . T C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:19,21:0.525:43,0,53 chr2 152558862 . T G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:27:17,10:0.37037:46,0,61 chr2 152611593 . C T 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:24:14,9:0.375:42,0,55 chr2 152619552 . G GCCA 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:47:3,42:0.893617:43,32,0 chr2 152625429 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:43:0,43:1:58,43,0 chr2 152626743 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:23:10,13:0.565217:56,0,56 chr2 152626767 . A C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:13:6,7:0.538462:47,0,56 chr2 152636396 . G T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:23:0,23:1:55,35,0 chr2 152657982 . T C 20.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:82:60,22:0.268293:20,0,48 chr2 152658069 . G C 44.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:13:0,13:1:44,23,0 chr2 152663010 . A G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:11:0,11:1:49,26,0 chr2 152664268 . A G 38.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:4:0,4:1:38,10,0 chr2 152679156 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:13:0,12:0.923077:50,28,0 chr2 152719458 . A G 31.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:6:0,6:1:30,9,0 chr2 152719492 . T C 31.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:5:0,5:1:31,13,0 chr2 152720499 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:24:0,24:1:53,43,0 chr2 153944486 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:26,31:0.54386:50,0,49 chr2 154409111 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:22:0,22:1:54,44,0 chr2 154450373 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:15:0,15:1:53,36,0 chr2 154854845 . T C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:54:26,28:0.518519:42,0,47 chr2 156326699 . TC T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:24:11,13:0.541667:45,0,61 chr2 156332499 . G C 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:43:0,42:0.976744:49,40,0 chr2 156342020 . C G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:29,32:0.52459:52,0,43 chr2 157284205 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:45:0,45:1:48,35,0 chr2 157300849 . C T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:88:0,88:1:53,39,0 chr2 157418599 . T TA 7.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:14:4,3:0.214286:6,38,0 chr2 157434676 . A C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:20:0,20:1:48,35,0 chr2 157538567 . C G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:38:0,38:1:51,37,0 chr2 157544396 . C T 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:58,38,0 chr2 157544625 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:51,38,0 chr2 157587377 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:56:30,26:0.464286:49,0,61 chr2 157770468 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:128:0,128:1:49,33,0 chr2 157780398 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:133:60,72:0.541353:51,0,49 chr2 157780620 . A AG 5.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:25:22,3:0.12:3,0,32 chr2 157780624 . GA G 6.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:24:18,3:0.125:4,0,46 chr2 157780625 . A G 8.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:21:13,8:0.380952:7,0,45 chr2 157806765 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:22,16:0.421053:49,0,58 chr2 157838306 . T G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:103:0,103:1:54,39,0 chr2 157860222 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:41:0,41:1:55,36,0 chr2 158121666 . C G 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:10:6,4:0.4:42,0,51 chr2 158123354 . C CT 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:26:10,14:0.538462:47,0,42 chr2 158172288 . A G 43.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:12:0,12:1:43,25,0 chr2 158309557 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:53:30,23:0.433962:49,0,54 chr2 158324990 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:129:84,45:0.348837:36,0,42 chr2 158338713 . T G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:17:8,9:0.529412:43,0,46 chr2 158339050 . A G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:39:26,13:0.333333:46,0,65 chr2 158666367 . C G 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:15:6,9:0.6:34,0,41 chr2 158678194 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:37:0,37:1:43,33,0 chr2 158804358 . C T 11.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:49:41,8:0.163265:11,0,43 chr2 158807087 . T C 7.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:155:116,39:0.251613:6,0,30 chr2 158815656 . G A 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:25:18,7:0.28:38,0,65 chr2 158815740 . G A 22.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:126:90,36:0.285714:22,0,49 chr2 158853677 . T A 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:36:26,10:0.277778:30,0,45 chr2 158866994 . G T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:103:48,55:0.533981:51,0,51 chr2 158883384 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:55:0,55:1:57,43,0 chr2 158883933 . G C 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:99:66,33:0.333333:30,0,47 chr2 159163352 . A G 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:56:0,56:1:62,49,0 chr2 159176332 . A T 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:8:4,4:0.5:42,0,49 chr2 159178684 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:80:37,43:0.5375:53,0,55 chr2 159178696 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:91:0,91:1:59,53,0 chr2 159198937 . T A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:18,16:0.470588:49,0,51 chr2 159219375 . G GC 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:79:3,76:0.962025:59,48,0 chr2 159219515 . C G 65.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:48:0,48:1:65,53,0 chr2 159219566 . T A 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:30:0,30:1:58,45,0 chr2 159231024 . T G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:44,32,0 chr2 159256370 . G T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:30:0,30:1:58,40,0 chr2 159257926 . G A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:1,31:0.96875:55,39,0 chr2 159259770 . A G 38.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:6:0,6:1:37,12,0 chr2 159275685 . A AC 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:27:0,27:1:52,48,0 chr2 159315537 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:106:76,30:0.283019:47,0,54 chr2 159315571 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:63:0,63:1:59,55,0 chr2 159320432 . A C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:22:0,22:1:46,32,0 chr2 159329889 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:17:0,17:1:51,30,0 chr2 159419732 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:34:0,34:1:55,39,0 chr2 159448230 . A T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:35:0,35:1:46,37,0 chr2 159745747 . A G 42 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:10:0,10:1:41,24,0 chr2 159747941 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:25:0,25:1:44,29,0 chr2 159748757 . T C 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:59,45,0 chr2 159806924 . T C 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:31:0,31:1:57,36,0 chr2 159807167 . T C 63.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:35:0,35:1:63,44,0 chr2 159817015 . A G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:8:0,8:1:43,21,0 chr2 159819916 . C A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:32:0,32:1:53,41,0 chr2 159819934 . A AT 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:21:0,21:1:48,40,0 chr2 159854411 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:39:0,39:1:47,32,0 chr2 159872623 . A C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:24:0,24:1:52,42,0 chr2 159881049 . G T 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,19:0.95:51,36,0 chr2 159951564 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:51,26,0 chr2 159976677 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:43:0,43:1:49,38,0 chr2 160016759 . A G 40.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:40,27,0 chr2 160028907 . G C 31.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:73:60,13:0.178082:31,0,48 chr2 160028931 . T C 25.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:73:61,12:0.164384:25,0,63 chr2 160033162 . G A 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:26:0,26:1:62,46,0 chr2 160045006 . A G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:79:0,79:1:58,50,0 chr2 160062246 . A AC 3.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:13:9,3:0.230769:0,0,31 chr2 160101838 . GAA G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:35:4,5:0.142857:43,23,42 chr2 160101838 . GA G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:35:4,26:0.742857:43,23,0 chr2 160112232 . CA C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:32:17,15:0.46875:52,0,59 chr2 160126549 . G C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:189:105,84:0.444444:47,0,57 chr2 160172707 . G A 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:71:43,28:0.394366:35,0,53 chr2 160367177 . T A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:42:21,20:0.47619:48,0,54 chr2 161203458 . A T 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:39:0,39:1:52,42,0 chr2 161235325 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:25:0,25:1:54,41,0 chr2 161318779 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:23:0,23:1:52,39,0 chr2 161418096 . A ATGTGTGTG 10.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:130:24,67:0.515385:10,0,34 chr2 161424237 . G A 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:128:0,128:1:58,39,0 chr2 162009238 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:101:61,40:0.39604:55,0,64 chr2 162020318 . CA C 17.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:25:6,9:0.36:17,0,44 chr2 162033665 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:28:0,28:1:56,45,0 chr2 162033686 . C CA 23.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:23:10,7:0.304348:23,0,43 chr2 162035338 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:28:0,28:1:50,38,0 chr2 162267332 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:35,18:0.339623:44,0,57 chr2 162267541 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:102:60,42:0.411765:47,0,49 chr2 162272314 . T C 7.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:99:78,21:0.212121:6,0,35 chr2 162352383 . T G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:31:19,12:0.387097:42,0,52 chr2 162360805 . T G 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:13:8,5:0.384615:38,0,58 chr2 162504547 . C A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:33,21:0.388889:46,0,63 chr2 163609529 . AT A 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:40:1,39:0.975:59,43,0 chr2 164494401 . T C 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:17:12,5:0.294118:32,0,55 chr2 164497202 . C T 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:33:0,33:1:59,43,0 chr2 164619743 . A T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:26:19,7:0.269231:36,0,59 chr2 164703224 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:42:24,17:0.404762:47,0,53 chr2 164722071 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:18:0,18:1:48,24,0 chr2 164722555 . T G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:14:6,8:0.571429:50,0,49 chr2 164729956 . T C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:44:29,15:0.340909:44,0,56 chr2 164730142 . C T 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:12:7,5:0.416667:42,0,55 chr2 164902291 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:28:13,15:0.535714:52,0,53 chr2 164902399 . T A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:14,14:0.5:49,0,61 chr2 165131262 . T G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:27,23:0.45098:52,0,50 chr2 165139597 . T A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:63:28,35:0.555556:48,0,49 chr2 165146969 . G A 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:126:74,52:0.412698:41,0,53 chr2 165147063 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:89:52,37:0.41573:50,0,59 chr2 165241135 . CGTGT C 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:75:19,55:0.733333:35,0,50 chr2 165296989 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:12:6,6:0.5:52,0,59 chr2 165313617 . T C 27.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:50:34,16:0.32:27,0,47 chr2 165315807 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:27:18,9:0.333333:47,0,57 chr2 165323140 . C T 32.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:84:61,22:0.261905:32,0,49 chr2 165388720 . T A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:91:55,36:0.395604:50,0,57 chr2 165679408 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:106:53,53:0.5:46,0,55 chr2 165764844 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:48:0,48:1:58,45,0 chr2 165884068 . C T 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:67:37,30:0.447761:41,0,59 chr2 165913610 . A G 28.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:49:36,13:0.265306:28,0,54 chr2 165915153 . C T 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:11:8,3:0.272727:37,0,63 chr2 165917461 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:57:38,19:0.333333:41,0,53 chr2 165931826 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:72:0,72:1:56,48,0 chr2 165941136 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:128:68,60:0.46875:52,0,56 chr2 165943383 . G A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:30:0,30:1:56,48,0 chr2 165953651 . G GCCCGCTCA 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:79:1,70:0.886076:52,35,0 chr2 166036278 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:52:28,24:0.461538:53,0,56 chr2 166036571 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:18,18:0.5:47,0,58 chr2 166039403 . CTT C 7.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:81:27,25:0.308642:7,0,45 chr2 166039633 . T G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:57:30,27:0.473684:43,0,50 chr2 166041354 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:85:47,38:0.447059:47,0,54 chr2 166041479 . G GA 10.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:21:7,7:0.333333:10,0,27 chr2 166041507 . G T 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:10,9:0.473684:41,0,51 chr2 166044096 . A C 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:67:42,25:0.373134:38,0,51 chr2 166046935 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:57:34,23:0.403509:38,0,46 chr2 166048865 . A G 9.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:25:21,4:0.16:8,0,41 chr2 166048970 . G A 23.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:31:23,8:0.258065:23,0,52 chr2 166053034 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:36:24,12:0.333333:50,0,61 chr2 166053049 . C A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:29:18,11:0.37931:57,0,71 chr2 166060846 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:15,17:0.53125:54,0,58 chr2 166199827 . C A 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:46:32,14:0.304348:32,0,51 chr2 166203939 . A T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:18:0,18:1:58,43,0 chr2 166204470 . GAAAC G 46 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:18:0,18:1:46,26,0 chr2 166233466 . T C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:52:30,21:0.403846:43,0,56 chr2 166242648 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:61:0,61:1:53,46,0 chr2 166280609 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:20:0,20:1:51,31,0 chr2 166288464 . A T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:34:0,34:1:52,38,0 chr2 166288485 . T C 64.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:37:0,37:1:64,43,0 chr2 166288632 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:41:0,41:1:56,39,0 chr2 166293183 . G A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:22:0,22:1:53,39,0 chr2 166305767 . G A 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:79:0,79:1:62,49,0 chr2 166306533 . T C 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:57:0,57:1:60,44,0 chr2 166311583 . C T 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:77:0,77:1:59,36,0 chr2 166375953 . C A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:16,19:0.542857:45,0,50 chr2 166423412 . C A 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:10:0,10:1:46,21,0 chr2 166456823 . T C 17.5 PASS . GT:GQ:DP:AD:VAF:PL 1/0:5:9:0,3:0.333333:16,18,9 chr2 166456823 . T G 17.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:9:0,6:0.666667:16,18,6 chr2 166456827 . T G 19.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:9:0,8:0.888889:18,20,0 chr2 166456941 . T C 25.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:50:39,11:0.22:25,0,45 chr2 166466012 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:16:7,9:0.5625:44,0,59 chr2 166477575 . G T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:49:0,48:0.979592:55,44,0 chr2 166477724 . T C 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:11:6,5:0.454545:41,0,51 chr2 166903438 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:19:0,19:1:46,27,0 chr2 168140265 . T C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:22,21:0.488372:48,0,60 chr2 168163656 . G A 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:42:36,6:0.142857:30,0,51 chr2 168163669 . C T 22.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:44:37,7:0.159091:22,0,50 chr2 168824641 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:81:53,28:0.345679:46,0,51 chr2 168834219 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:34:11,23:0.676471:53,0,43 chr2 168846972 . G C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:28:0,28:1:55,42,0 chr2 168850918 . C T 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:120:83,37:0.308333:31,0,46 chr2 168851042 . A G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:34,22:0.392857:46,0,53 chr2 168863363 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:17:0,17:1:53,41,0 chr2 168863441 . T G 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:29:0,29:1:51,33,0 chr2 168864867 . G A 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:68:0,68:1:62,55,0 chr2 168864871 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:72:39,32:0.444444:55,0,69 chr2 168865434 . A T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:74:42,32:0.432432:47,0,57 chr2 168871559 . GAAA G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:26:1,22:0.846154:48,42,0 chr2 168906638 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:0,35:1:57,40,0 chr2 168907666 . G C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:183:98,85:0.464481:50,0,60 chr2 168923856 . T C 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:170:0,169:0.994118:60,48,0 chr2 168932506 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:121:0,121:1:49,49,0 chr2 168944978 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:22:0,22:1:55,38,0 chr2 168958145 . G T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:0,54:1:54,44,0 chr2 168970367 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:59:1,58:0.983051:55,38,0 chr2 168971767 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:13:0,13:1:49,28,0 chr2 168971815 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:47:0,47:1:50,32,0 chr2 168973645 . G A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:49:0,49:1:57,48,0 chr2 168973818 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:133:0,132:0.992481:54,47,0 chr2 168974005 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:23:0,23:1:51,37,0 chr2 168986299 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:94:54,40:0.425532:50,0,57 chr2 169095723 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:35:0,35:1:53,39,0 chr2 169140541 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:65:43,22:0.338462:45,0,50 chr2 169146922 . T G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:71:37,34:0.478873:48,0,46 chr2 169154475 . T C 31.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:52:37,15:0.288462:31,0,47 chr2 169176479 . C T 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:81:46,35:0.432099:46,0,53 chr2 169203006 . C G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:40:25,14:0.35:45,0,55 chr2 169225503 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:15:7,8:0.533333:47,0,49 chr2 169231841 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:85:37,48:0.564706:50,0,50 chr2 169235885 . A G 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:50:38,12:0.24:30,0,54 chr2 169242936 . T G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:32:16,16:0.5:51,0,65 chr2 169242963 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:90:43,47:0.522222:56,0,59 chr2 169243385 . A C 61.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:25:10,15:0.6:61,0,62 chr2 169243389 . G A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:26:11,15:0.576923:58,0,59 chr2 169246826 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:124:68,56:0.451613:54,0,56 chr2 169246841 . G T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:121:72,49:0.404959:55,0,59 chr2 169259078 . T C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:109:68,41:0.376147:46,0,51 chr2 169259162 . A G 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:71:49,22:0.309859:38,0,53 chr2 169273018 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:118:58,60:0.508475:56,0,54 chr2 169282836 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:39:0,39:1:53,41,0 chr2 169294161 . G A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:75:49,26:0.346667:41,0,52 chr2 169294717 . TAA T 14 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:57:3,23:0.403509:11,0,0 chr2 169362306 . T C 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:76:0,76:1:59,48,0 chr2 169362337 . C G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:107:0,107:1:56,48,0 chr2 169479514 . G C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:59:0,59:1:54,37,0 chr2 169529784 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:13:6,7:0.538462:44,0,50 chr2 169537977 . T A 34.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:11:7,4:0.363636:34,0,64 chr2 169546520 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:33:0,33:1:56,46,0 chr2 169555183 . T C 38.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:5:0,5:1:38,15,0 chr2 169571617 . T G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:10:0,10:1:41,17,0 chr2 169749471 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:20:0,20:1:49,30,0 chr2 169808598 . G A 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:15:0,15:1:61,44,0 chr2 169812303 . C T 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:7:0,7:1:39,17,0 chr2 169827714 . C T 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:5:2,3:0.6:30,0,23 chr2 170061034 . T A 37.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:6:0,6:1:37,14,0 chr2 170061473 . CTT C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:18:20:0,14:0.7:49,49,17 chr2 170061473 . CT C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:20:0,6:0.3:49,49,40 chr2 170199262 . A G 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:49:31,18:0.367347:44,0,52 chr2 170214340 . G T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:25:15,10:0.4:57,0,70 chr2 170214402 . T C 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:61:42,19:0.311475:35,0,52 chr2 170214859 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:23:0,23:1:54,36,0 chr2 170217377 . G A 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:74:53,21:0.283784:37,0,50 chr2 170369331 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:53:0,53:1:54,44,0 chr2 170371690 . G GA 14.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:28:0,16:0.571429:14,14,0 chr2 170383050 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,18:1:51,34,0 chr2 170383739 . C T 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:55:0,55:1:60,43,0 chr2 170404198 . C A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:7:0,7:1:42,19,0 chr2 170404277 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:37:0,37:1:55,37,0 chr2 170404287 . A G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:38:0,38:1:58,49,0 chr2 170404310 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:53:0,52:0.981132:55,48,0 chr2 170463487 . A C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:24,21:0.466667:48,0,51 chr2 170498688 . A G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:46:0,46:1:59,44,0 chr2 170499764 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:43:0,43:1:56,40,0 chr2 170651752 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:29:0,29:1:52,39,0 chr2 170716430 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:104:56,48:0.461538:49,0,55 chr2 170771166 . T G 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:25:0,25:1:54,46,0 chr2 170798153 . A C 63.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:30:18,12:0.4:63,0,63 chr2 170816622 . G A 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:35:25,10:0.285714:42,0,60 chr2 170816954 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:50:28,22:0.44:51,0,53 chr2 170822115 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:80:47,33:0.4125:43,0,57 chr2 170845970 . C T 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:22:15,7:0.318182:27,0,55 chr2 170846075 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:23:15,8:0.347826:46,0,57 chr2 170848647 . AT A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:42:21,19:0.452381:48,0,58 chr2 170961779 . G A 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:30:0,30:1:58,45,0 chr2 170965956 . C T 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:91:0,91:1:59,41,0 chr2 171049959 . GA G 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:44:27,17:0.386364:35,0,54 chr2 171053803 . C T 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:38:30,8:0.210526:30,0,52 chr2 171055220 . A C 4.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:12:9,2:0.166667:1,0,36 chr2 171059986 . C A 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:115:66,49:0.426087:38,0,48 chr2 171160246 . G A 22.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:6:3,2:0.333333:22,0,38 chr2 171331858 . C T 24.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:59:44,15:0.254237:24,0,48 chr2 171360459 . T C 30.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:84:61,23:0.27381:30,0,48 chr2 171460543 . A T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:20:0,20:1:51,31,0 chr2 171522308 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:51:0,51:1:55,43,0 chr2 171541801 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:25:11,14:0.56:54,0,45 chr2 171554763 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:92:60,32:0.347826:44,0,49 chr2 171687403 . G T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:64:0,64:1:53,42,0 chr2 171692738 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:39:0,39:1:56,42,0 chr2 171725771 . A ATTAC 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:17:0,16:0.941176:48,36,0 chr2 171725834 . AAC A 30.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:18:13,5:0.277778:30,0,61 chr2 171855970 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:14,24:0.631579:53,0,53 chr2 171868791 . A G 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:89:57,32:0.359551:27,0,44 chr2 171976274 . T C 65.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:48:0,48:1:65,55,0 chr2 171999938 . C A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:13,13:0.5:45,0,58 chr2 172052348 . C T 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:50:35,15:0.3:38,0,53 chr2 172101522 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:62:22,40:0.645161:60,0,53 chr2 172427981 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:60:0,60:1:52,44,0 chr2 172427985 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:57:0,57:1:46,43,0 chr2 172428000 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:31:1,30:0.967742:55,43,0 chr2 172469112 . C A 28.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:124:81,43:0.346774:28,0,54 chr2 172475080 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:16,9:0.36:47,0,62 chr2 172479746 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:45:23,22:0.488889:46,0,46 chr2 172487375 . C T 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:74:42,32:0.432432:43,0,56 chr2 172504272 . A AT 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:90:42,24:0.266667:47,0,50 chr2 172504272 . A T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/0:6:90:42,22:0.244444:47,4,50 chr2 172736055 . C CG 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:42:1,40:0.952381:51,46,0 chr2 172795185 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:28:0,28:1:56,48,0 chr2 172821935 . G T 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:41:30,11:0.268293:31,0,59 chr2 173075892 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:19:0,19:1:48,28,0 chr2 173191003 . A G 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:45:22,23:0.511111:55,0,57 chr2 173203785 . G C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:33:0,33:1:53,43,0 chr2 173209679 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:26:0,26:1:54,64,0 chr2 173229772 . G A 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:44:30,14:0.318182:37,0,59 chr2 173258671 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:10:3,7:0.7:47,0,49 chr2 173266797 . A G 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:41:24,16:0.390244:38,0,55 chr2 173365425 . C G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:15,13:0.464286:46,0,56 chr2 173366246 . G T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:33:17,15:0.454545:45,0,53 chr2 173366255 . G GT 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:31:14,16:0.516129:43,0,52 chr2 174336571 . C G 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:51:0,51:1:58,45,0 chr2 174395627 . G T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:40,40:0.5:46,0,55 chr2 174398490 . A G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:5:0,5:1:42,12,0 chr2 174442076 . C G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:20:0,20:1:48,35,0 chr2 174453862 . G T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:35:0,34:0.971429:52,38,0 chr2 174461531 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:50:20,30:0.6:53,0,46 chr2 174470348 . G T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:9:0,9:1:43,28,0 chr2 174559701 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:23:0,23:1:50,33,0 chr2 174566979 . C G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:42:0,42:1:56,44,0 chr2 174572212 . G A 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:65:0,65:1:61,48,0 chr2 174574784 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:52,40,0 chr2 174574808 . G A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:27:0,27:1:55,37,0 chr2 174574953 . T TA 15.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:74:10,28:0.378378:14,17,0 chr2 174750180 . CAA C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:114:2,72:0.631579:43,36,0 chr2 174758060 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:22:0,22:1:54,41,0 chr2 174759379 . GA G 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:57:32,24:0.421053:32,0,51 chr2 174772715 . A T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:23:9,14:0.608696:47,0,52 chr2 174772850 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:47,33:0.4125:47,0,53 chr2 174776120 . A T 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:53:31,22:0.415094:40,0,54 chr2 174812294 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:47:24,23:0.489362:45,0,53 chr2 174877819 . T C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:59:31,28:0.474576:47,0,51 chr2 176100176 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:154:85,69:0.448052:44,0,50 chr2 176105728 . A T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:46:23,23:0.5:49,0,55 chr2 176106070 . AG A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:90:45,45:0.5:49,0,52 chr2 176107240 . G T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:24,13:0.351351:48,0,53 chr2 176108184 . AGG A 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:82:13,54:0.658537:33,0,48 chr2 176123562 . C CGCA 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:49:22,26:0.530612:51,0,58 chr2 176131295 . C T 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:30:0,30:1:58,48,0 chr2 176152000 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:75:40,35:0.466667:52,0,56 chr2 176169393 . G T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:70:43,27:0.385714:44,0,55 chr2 176171483 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:35:20,15:0.428571:47,0,51 chr2 176172026 . T C 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:63:0,63:1:61,45,0 chr2 176189683 . T C 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:48:27,21:0.4375:44,0,55 chr2 176190041 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:78:34,44:0.564103:45,0,46 chr2 177227434 . T C 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:59,42,0 chr2 177233359 . CA C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:26:18,8:0.307692:44,0,55 chr2 177263965 . A C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:42:20,22:0.52381:48,0,49 chr2 177264567 . A G 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:109:73,34:0.311927:28,0,42 chr2 177552414 . C T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:75:0,75:1:55,40,0 chr2 177552497 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:65:0,65:1:54,42,0 chr2 177617090 . G T 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:28:0,28:1:45,29,0 chr2 177617366 . C T 40.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:13:0,13:1:40,29,0 chr2 177629445 . G GGGA 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:166:3,157:0.945783:59,50,0 chr2 177663975 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:56:0,56:1:57,43,0 chr2 177669596 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:21:0,21:1:50,44,0 chr2 177675565 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:41:0,41:1:55,42,0 chr2 177701087 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:51:27,24:0.470588:48,0,51 chr2 178071646 . T G 63.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:110:0,110:1:63,45,0 chr2 178071887 . C T 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:61:0,61:1:59,41,0 chr2 178112893 . C G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:49:0,49:1:51,38,0 chr2 178113319 . GGGGA G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:30:0,30:1:57,42,0 chr2 178324224 . T C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:34,28:0.451613:46,0,56 chr2 178339070 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:64:0,64:1:57,43,0 chr2 178372104 . A G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:14:10,4:0.285714:42,0,55 chr2 178528964 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:33,22:0.4:44,0,56 chr2 178531846 . T G 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:162:95,67:0.41358:36,0,55 chr2 178549435 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:72:45,27:0.375:47,0,55 chr2 178567458 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:66:29,37:0.560606:53,0,53 chr2 178575302 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:104:51,53:0.509615:51,0,51 chr2 178580041 . C G 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:100:0,99:0.99:59,42,0 chr2 178582900 . CA C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:20,20:0.5:50,0,61 chr2 178593275 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:61:36,25:0.409836:47,0,55 chr2 178597767 . A G 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:130:82,48:0.369231:36,0,42 chr2 178597958 . A G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:111:66,44:0.396396:51,0,54 chr2 178647165 . T G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:13:7,6:0.461538:42,0,50 chr2 178677172 . C G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:25:12,13:0.52:50,0,52 chr2 178677335 . CAT C 11.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:24:0,23:0.958333:10,13,0 chr2 178681132 . C T 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:46:31,15:0.326087:42,0,60 chr2 178689578 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:60:41,19:0.316667:41,0,48 chr2 178720539 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:39:0,39:1:57,40,0 chr2 178730390 . C G 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:44:32,12:0.272727:39,0,52 chr2 178735836 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:47:0,47:1:56,47,0 chr2 178735921 . C T 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:68:45,23:0.338235:43,0,54 chr2 178739433 . T G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:46,34:0.425:48,0,50 chr2 178739639 . T G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:46:27,19:0.413043:49,0,52 chr2 178740015 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:65:38,27:0.415385:52,0,53 chr2 178740453 . C A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:35:18,17:0.485714:44,0,59 chr2 178740978 . A G 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:69:45,24:0.347826:40,0,60 chr2 178741811 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:58:20,38:0.655172:49,0,45 chr2 178746984 . C A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:58:30,28:0.482759:41,0,59 chr2 178750225 . A G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:71:0,71:1:59,46,0 chr2 178751160 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:44:22,22:0.5:53,0,59 chr2 178751204 . C G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:27:0,27:1:59,51,0 chr2 178751267 . T C 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:33:0,33:1:60,46,0 chr2 178752043 . GA G 28.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:26:7,14:0.538462:28,16,0 chr2 178756224 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:105:66,39:0.371429:47,0,50 chr2 178759031 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:78:44,34:0.435897:57,0,58 chr2 178759212 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:36:0,36:1:57,46,0 chr2 178764636 . T C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:115:0,115:1:58,43,0 chr2 178764734 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:127:65,62:0.488189:52,0,46 chr2 178766487 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:95:50,45:0.473684:45,0,52 chr2 178766635 . A C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:15,21:0.567568:50,0,56 chr2 178767983 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:24,19:0.44186:46,0,51 chr2 178769649 . GTA G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:22:0,22:1:45,40,0 chr2 178770209 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:89:58,31:0.348315:45,0,57 chr2 178773134 . C G 33.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:35:26,9:0.257143:33,0,51 chr2 178777248 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:91:54,37:0.406593:46,0,48 chr2 178777698 . G A 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:46:0,46:1:61,45,0 chr2 178779048 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:47,40:0.45977:49,0,54 chr2 178779159 . A G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:29:0,29:1:59,46,0 chr2 178779207 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:0,17:1:48,35,0 chr2 178779308 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:26:0,24:0.923077:47,32,0 chr2 178779433 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:18:11,7:0.388889:45,0,56 chr2 178780128 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:71:38,33:0.464789:49,0,50 chr2 178782819 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:101:54,47:0.465347:49,0,48 chr2 178785974 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:125:74,51:0.408:47,0,56 chr2 178790718 . C G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:159:99,59:0.371069:42,0,59 chr2 178802363 . C T 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:32:0,32:1:59,38,0 chr2 178835052 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:17,15:0.46875:47,0,57 chr2 178837541 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:93:0,93:1:56,42,0 chr2 178868253 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:10:0,10:1:44,27,0 chr2 178888518 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:41:0,41:1:56,49,0 chr2 178975106 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:51,32,0 chr2 179049913 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:91:56,35:0.384615:44,0,46 chr2 179123668 . T TA 38.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:20:4,12:0.6:38,36,0 chr2 179183181 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:65:0,65:1:49,40,0 chr2 179446480 . G A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:19:0,19:1:60,42,0 chr2 179945453 . C T 6.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:36:31,5:0.138889:4,0,34 chr2 179945537 . A T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:45:0,45:1:55,44,0 chr2 179945631 . C T 22.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:77:60,17:0.220779:22,0,46 chr2 179950801 . A T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:13,13:0.5:50,0,60 chr2 179970862 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:34:0,34:1:56,41,0 chr2 179971065 . T A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:39:0,39:1:48,44,0 chr2 179971095 . A T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:20:12,8:0.4:47,0,55 chr2 179982016 . G T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:29:0,29:1:57,42,0 chr2 181480119 . G GT 29.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:8:1,7:0.875:28,7,0 chr2 181486016 . A G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:29:0,29:1:58,48,0 chr2 181509807 . A G 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:34:0,34:1:61,44,0 chr2 181511819 . T G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:26:0,26:1:48,40,0 chr2 181530618 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:38:0,38:1:52,35,0 chr2 181534370 . T C 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:55:0,55:1:55,39,0 chr2 181534770 . A ATT 30.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:8:0,6:0.75:30,21,0 chr2 181534911 . A G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:21:0,21:1:43,29,0 chr2 181539065 . A AT 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:12:0,12:1:48,28,0 chr2 181539124 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:28:0,28:1:54,40,0 chr2 181548532 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:27:0,27:1:49,33,0 chr2 181548875 . A T 63.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:99:0,97:0.979798:63,51,0 chr2 181565393 . C A 34.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:88:60,28:0.318182:34,0,53 chr2 181604076 . T G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:16,22:0.578947:51,0,52 chr2 181604091 . A T 59.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:25:11,13:0.52:59,0,66 chr2 181604128 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:13,12:0.48:51,0,62 chr2 181656851 . G A 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:119:0,119:1:57,41,0 chr2 181678728 . T C 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:142:0,142:1:61,46,0 chr2 181680491 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:59:0,59:1:49,38,0 chr2 181916147 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:99:57,42:0.424242:49,0,49 chr2 182035990 . T TAC 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:80:43,32:0.4:50,0,61 chr2 182063828 . G C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:50:0,50:1:52,39,0 chr2 182168293 . GA G 10.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:16:7,8:0.5:9,0,40 chr2 182173558 . TATA T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:11:4,7:0.636364:47,0,43 chr2 182201650 . C CAA 20 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:25:0,14:0.56:17,0,1 chr2 182205892 . A T 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:9:6,3:0.333333:32,0,58 chr2 182223857 . G A 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:16:13,3:0.1875:13,0,46 chr2 182720028 . G A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:12,7:0.368421:41,0,62 chr2 182728970 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:65:38,27:0.415385:45,0,48 chr2 182732591 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:25,21:0.456522:54,0,62 chr2 182757820 . T G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:44:14,29:0.659091:48,0,40 chr2 182762777 . A G 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:20:15,5:0.25:27,0,53 chr2 182953229 . T A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:51:29,22:0.431373:50,0,54 chr2 182962290 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:19,11:0.366667:47,0,54 chr2 182983386 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:52:27,25:0.480769:46,0,55 chr2 183083482 . A G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:10,16:0.615385:50,0,60 chr2 183095415 . G GT 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:25:9,15:0.6:35,0,22 chr2 183123764 . C G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:147:5,139:0.945578:56,44,0 chr2 183128505 . A G 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:19:10,9:0.473684:44,0,52 chr2 183130387 . CTT C 8.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:11:8,2:0.181818:8,0,32 chr2 183130393 . T A 3.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:10:8,2:0.2:0,0,40 chr2 183130414 . G T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:13,11:0.458333:43,0,53 chr2 183133523 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:32:16,16:0.5:50,0,55 chr2 183133638 . CT C 8.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:47:28,12:0.255319:7,0,15 chr2 183151664 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:8,10:0.555556:49,0,59 chr2 183158423 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:21:10,11:0.52381:52,0,54 chr2 183161147 . G T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:53:30,23:0.433962:55,0,65 chr2 183161148 . A T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:51:29,22:0.431373:55,0,61 chr2 184596409 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:12:0,12:1:47,20,0 chr2 184598393 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:27:17,9:0.333333:45,0,50 chr2 184933777 . A C 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:11:0,11:1:41,24,0 chr2 184936178 . A T 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:58:0,58:1:63,46,0 chr2 184937020 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:18:0,18:1:48,30,0 chr2 184937028 . A G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:17:0,17:1:54,39,0 chr2 184937484 . C CACA 37.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:7:1,5:0.714286:37,9,0 chr2 184937516 . C A 33.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:4:0,4:1:32,5,0 chr2 184937636 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:21:0,21:1:51,37,0 chr2 185738878 . A AG 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:61:25,36:0.590164:54,0,56 chr2 185745617 . T G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:20:7,13:0.65:53,0,57 chr2 185746839 . C A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:23:0,23:1:53,44,0 chr2 185763216 . T C 23.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:95:68,27:0.284211:23,0,44 chr2 185764464 . T G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:20:12,8:0.4:44,0,58 chr2 185789865 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:45:26,19:0.422222:54,0,61 chr2 185790999 . G A 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:37:0,37:1:57,39,0 chr2 185791930 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:44:26,18:0.409091:47,0,51 chr2 185792113 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:59:28,31:0.525424:50,0,50 chr2 185792229 . T C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:54:30,24:0.444444:47,0,51 chr2 185792362 . C A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:88:47,41:0.465909:53,0,47 chr2 185793329 . G A 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:67:50,17:0.253731:35,0,55 chr2 185793711 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:56:32,24:0.428571:49,0,57 chr2 185793838 . G T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:22,22:0.5:50,0,48 chr2 185794632 . G T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:83:46,37:0.445783:44,0,53 chr2 185796946 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:48:23,25:0.520833:51,0,48 chr2 185799746 . T C 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:16,9:0.36:44,0,57 chr2 185800236 . C A 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:57:40,17:0.298246:39,0,49 chr2 185800705 . G A 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:73:47,26:0.356164:37,0,53 chr2 185801097 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:30,19:0.387755:48,0,55 chr2 185802394 . T C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:71:47,24:0.338028:43,0,56 chr2 185804208 . A G 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:68:44,24:0.352941:42,0,56 chr2 185805377 . A C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:35:0,35:1:54,44,0 chr2 185806053 . T A 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:29:20,9:0.310345:43,0,53 chr2 185806252 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:51:0,51:1:57,36,0 chr2 185806630 . G A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:55:23,31:0.563636:48,0,47 chr2 185807185 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:84:56,28:0.333333:47,0,54 chr2 185807800 . T A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:62:37,23:0.370968:41,0,52 chr2 185808170 . A G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:31,24:0.436364:44,0,50 chr2 185813514 . A AT 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:19:7,12:0.631579:53,0,54 chr2 185833149 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:45:0,45:1:56,39,0 chr2 186500151 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:20:11,9:0.45:54,0,59 chr2 186590551 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:67:0,67:1:48,37,0 chr2 186622433 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:34:0,34:1:52,34,0 chr2 186637015 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:23:8,15:0.652174:49,0,46 chr2 186638499 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:21:0,21:1:50,35,0 chr2 186646739 . A G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:65:39,26:0.4:45,0,49 chr2 186665096 . ATT A 33.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:24:0,13:0.541667:33,40,0 chr2 186667690 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:34:0,34:1:49,37,0 chr2 186694233 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:44,31:0.413333:48,0,47 chr2 186694320 . G GCAA 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:55:0,49:0.890909:49,37,0 chr2 187346278 . C A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:46:25,21:0.456522:50,0,58 chr2 187352080 . T C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:15:5,10:0.666667:55,0,58 chr2 187378893 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:19:7,12:0.631579:50,0,50 chr2 187378906 . A G 62.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:23:7,16:0.695652:62,0,62 chr2 187387684 . T A 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:10:7,3:0.3:28,0,51 chr2 187467965 . A G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:24:13,11:0.458333:51,0,59 chr2 187478770 . T C 17.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:45:36,9:0.2:17,0,43 chr2 188998663 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:48:24,23:0.479167:45,0,51 chr2 189001473 . T A 63.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:59:0,59:1:63,47,0 chr2 189010695 . T G 64.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:139:0,139:1:64,47,0 chr2 189036569 . G A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:23:0,23:1:60,44,0 chr2 189043211 . A G 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:57:0,57:1:60,44,0 chr2 189058904 . AT A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:30:4,22:0.733333:44,37,0 chr2 189060822 . T A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:33:0,33:1:56,43,0 chr2 189068105 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:54:0,54:1:58,39,0 chr2 189110232 . G T 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:92:0,92:1:60,48,0 chr2 189458804 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:25:0,25:1:49,35,0 chr2 189565451 . A G 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:36,28:0.4375:42,0,51 chr2 189579904 . C G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:47:0,47:1:50,38,0 chr2 189580468 . G C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:87:0,87:1:51,42,0 chr2 189661479 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:24:16,8:0.333333:52,0,63 chr2 189661498 . C T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:37:24,13:0.351351:53,0,65 chr2 189666700 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:49:0,49:1:56,49,0 chr2 189666889 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:61:32,29:0.47541:57,0,60 chr2 189677116 . AT A 3.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:22:10,8:0.363636:1,0,28 chr2 189677135 . G T 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:23:9,14:0.608696:33,0,40 chr2 189728034 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:20:13,7:0.35:49,0,58 chr2 189728442 . ATTTTT A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:22:9,13:0.590909:54,0,58 chr2 189730532 . G T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:22:0,22:1:49,29,0 chr2 189737787 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:18:0,18:1:47,35,0 chr2 189746358 . T C 8.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:12:10,2:0.166667:7,0,48 chr2 189752917 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:52:0,52:1:56,41,0 chr2 189761089 . GACTA G 16.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:19:16,3:0.157895:16,0,53 chr2 189775749 . A G 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:38:20,18:0.473684:37,0,58 chr2 189782382 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:52,32,0 chr2 189805813 . T TA 7.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:34:21,10:0.294118:6,0,43 chr2 189854887 . A G 31.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:32:25,7:0.21875:31,0,55 chr2 190294506 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:26:0,26:1:55,46,0 chr2 190296896 . T C 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:112:0,112:1:59,50,0 chr2 190319749 . A G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:81:31,50:0.617284:60,0,57 chr2 190319798 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:14,25:0.641026:49,0,52 chr2 190366732 . G A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:24,26:0.52:55,0,45 chr2 190371175 . A C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:106:0,105:0.990566:54,40,0 chr2 190436642 . A G 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:61:43,18:0.295082:38,0,53 chr2 190469733 . A ATTTTTAT 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:13:0,12:0.923077:47,42,0 chr2 190489765 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:95:51,43:0.452632:50,0,53 chr2 190499982 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:36:17,19:0.527778:55,0,55 chr2 190514542 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:57:1,56:0.982456:54,36,0 chr2 190525400 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:14:0,14:1:48,32,0 chr2 190607121 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:14:6,8:0.571429:52,0,59 chr2 190673067 . GT G 18 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:11:1,9:0.818182:16,2,0 chr2 190881507 . T G 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:49:31,18:0.367347:35,0,44 chr2 190908462 . A G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:20:11,9:0.45:43,0,56 chr2 190944844 . C A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:24:8,16:0.666667:48,0,54 chr2 190944845 . A G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,25:1:45,45,0 chr2 190945070 . A ATAGT 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:80:0,72:0.9:59,47,0 chr2 190975250 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:58:27,31:0.534483:49,0,45 chr2 190977033 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:20,31:0.607843:49,0,54 chr2 190979104 . A G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:44:19,25:0.568182:49,0,52 chr2 190998175 . T C 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:36:23,13:0.361111:39,0,57 chr2 191013761 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:72:37,35:0.486111:47,0,51 chr2 191013928 . C G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:102:56,46:0.45098:50,0,53 chr2 191131792 . T C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:43:23,20:0.465116:44,0,52 chr2 191296244 . G A 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:5:1,4:0.8:37,0,23 chr2 191350240 . T C 28.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:11:8,3:0.272727:28,0,51 chr2 191360751 . GTGT G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/0:42:61:1,49:0.803279:47,52,44 chr2 191360751 . G GTGTTGT 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:61:1,10:0.163934:47,52,60 chr2 191385842 . T C 29.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:14:11,3:0.214286:29,0,56 chr2 191386000 . G A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:74:51,23:0.310811:36,0,60 chr2 191408207 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:22,21:0.488372:54,0,61 chr2 191414601 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:66:43,23:0.348485:45,0,58 chr2 191836667 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:86:46,40:0.465116:48,0,49 chr2 191846436 . A C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:38:0,38:1:55,47,0 chr2 191953876 . T C 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:12:7,5:0.416667:37,0,55 chr2 195657562 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:20:0,20:1:55,36,0 chr2 195771938 . C G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:18:8,10:0.555556:54,0,62 chr2 195794310 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:27:12,15:0.555556:52,0,51 chr2 195799273 . T C 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:18:9,8:0.444444:38,0,51 chr2 195808809 . A G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:64:0,64:1:53,42,0 chr2 195891811 . GA G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:27:1,25:0.925926:55,45,0 chr2 195926552 . T G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:20:0,20:1:57,41,0 chr2 195987187 . G A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:34:0,34:1:58,42,0 chr2 195988044 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:23,15:0.394737:48,0,58 chr2 196001696 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:36:0,36:1:56,35,0 chr2 196026725 . T C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:12:0,12:1:42,26,0 chr2 196047343 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:49:0,49:1:56,43,0 chr2 196051267 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:36:0,36:1:56,48,0 chr2 196068655 . C T 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:118:48,70:0.59322:52,0,47 chr2 196139715 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:18:0,18:1:52,34,0 chr2 196146099 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:22:0,22:1:53,37,0 chr2 196156417 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:13:0,13:1:50,33,0 chr2 196156552 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:40:0,40:1:54,43,0 chr2 196156648 . T A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:19:0,19:1:60,37,0 chr2 196201240 . C A 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:22:0,22:1:56,37,0 chr2 196242035 . T C 39.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:17:0,17:1:39,30,0 chr2 196254005 . C T 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:104:0,104:1:59,45,0 chr2 196306451 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:13:0,13:1:56,45,0 chr2 196306459 . C T 23.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:11:9,2:0.181818:23,0,58 chr2 196308092 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:43:0,43:1:55,40,0 chr2 196319597 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:89:0,89:1:54,35,0 chr2 196343710 . G A 26.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:51:41,10:0.196078:26,0,44 chr2 196592517 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:61:0,61:1:54,38,0 chr2 196639821 . C G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:63:0,63:1:55,41,0 chr2 196912865 . C T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:49,39,0 chr2 197001746 . T A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:26:0,26:1:50,43,0 chr2 197090056 . A G 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:41:0,41:1:55,43,0 chr2 197121324 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:50,44,0 chr2 197136595 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:71:38,32:0.450704:46,0,58 chr2 197392928 . T TA 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:19:2,16:0.842105:45,25,0 chr2 197393071 . T C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:70:0,70:1:57,39,0 chr2 197400449 . T A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:0,35:1:55,40,0 chr2 197400802 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:65:1,64:0.984615:55,40,0 chr2 197403046 . G GAA 42.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,19:0.95:42,36,0 chr2 197418581 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:31:1,30:0.967742:49,37,0 chr2 197497294 . T C 65 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:83:0,82:0.987952:65,51,0 chr2 197500319 . C G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:24:0,24:1:48,38,0 chr2 197644227 . G A 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:81:0,81:1:61,53,0 chr2 197778927 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:15:4,11:0.733333:53,0,42 chr2 197805147 . G C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:7:0,7:1:44,17,0 chr2 198085516 . G A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:48:0,48:1:56,45,0 chr2 199308961 . T G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:105:0,105:1:57,50,0 chr2 199380522 . C G 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:95:60,35:0.368421:42,0,51 chr2 199458683 . C G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:35:23,12:0.342857:40,0,51 chr2 199844376 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:14:4,10:0.714286:52,0,45 chr2 199955782 . T G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:54:0,54:1:56,35,0 chr2 200389326 . G C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:31:14,17:0.548387:50,0,55 chr2 200412458 . T C 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:10:6,4:0.4:38,0,46 chr2 200490212 . C G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:24,31:0.563636:49,0,44 chr2 200507045 . G T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:34:9,25:0.735294:48,0,43 chr2 200532272 . GT G 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:125:73,33:0.264:30,0,58 chr2 200532924 . A C 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:17:10,7:0.411765:45,0,55 chr2 200572611 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:21,22:0.511628:51,0,51 chr2 200595381 . A G 27.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:25:17,8:0.32:27,0,52 chr2 200599572 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:10,13:0.565217:50,0,51 chr2 200604009 . C G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:21,24:0.533333:48,0,55 chr2 200605510 . ATTTT A 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:20:8,7:0.35:28,0,51 chr2 200608951 . G A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:27:11,16:0.592593:53,0,58 chr2 200609456 . C T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:14:10,4:0.285714:36,0,57 chr2 200616069 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:17,21:0.552632:51,0,51 chr2 200621107 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:22,26:0.541667:48,0,50 chr2 200638175 . G A 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:24:17,7:0.291667:35,0,55 chr2 200641230 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:20:10,10:0.5:50,0,58 chr2 200651216 . T C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:51:27,24:0.470588:53,0,53 chr2 200669666 . A G 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:129:84,44:0.341085:41,0,53 chr2 200676898 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:52:23,29:0.557692:53,0,42 chr2 200871345 . A G 33.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:18:13,5:0.277778:33,0,61 chr2 200903515 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:45:21,24:0.533333:55,0,56 chr2 200921114 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:20,28:0.583333:49,0,55 chr2 201016954 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:9,14:0.608696:49,0,59 chr2 201129817 . C T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:18:11,7:0.388889:45,0,54 chr2 201141373 . G A 24.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:11:8,3:0.272727:24,0,50 chr2 201160408 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:26:12,14:0.538462:49,0,53 chr2 201160898 . A G 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:80:53,27:0.3375:36,0,48 chr2 201185954 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:23,24:0.510638:51,0,51 chr2 201206012 . A T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:43:25,17:0.395349:43,0,57 chr2 201217736 . T A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:42:19,23:0.547619:49,0,50 chr2 201233994 . C T 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:47:25,22:0.468085:42,0,47 chr2 201258272 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:89:42,47:0.52809:52,0,57 chr2 201286440 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:33:18,15:0.454545:48,0,61 chr2 201346720 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:11,12:0.521739:49,0,59 chr2 201348226 . C G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:33:16,17:0.515152:49,0,65 chr2 201348227 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:37:18,19:0.513514:51,0,56 chr2 201350686 . C CAAAACAAAACAAAACAA 33.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:25:21,3:0.12:33,0,51 chr2 201350769 . C G 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:28:21,7:0.25:27,0,56 chr2 201380521 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:18:7,11:0.611111:53,0,49 chr2 201381221 . TAA T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:47:6,31:0.659574:39,0,40 chr2 201381232 . A G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:43:17,25:0.581395:46,0,47 chr2 201384065 . T C 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:9:5,4:0.444444:43,0,52 chr2 201384256 . T A 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:17:11,6:0.352941:35,0,53 chr2 201387795 . C A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:90:50,40:0.444444:55,0,61 chr2 201387816 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:86:47,39:0.453488:57,0,61 chr2 201395326 . G A 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:50:0,50:1:60,45,0 chr2 201399433 . C T 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:65:44,21:0.323077:41,0,52 chr2 201420377 . A G 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:15:10,5:0.333333:41,0,55 chr2 201473007 . A G 23.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:64:51,13:0.203125:23,0,54 chr2 201477679 . G T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:31,17:0.354167:46,0,64 chr2 201478079 . T C 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:24:10,14:0.583333:39,0,50 chr2 201479456 . GT G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:31:2,29:0.935484:48,27,0 chr2 201487926 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:15:6,9:0.6:51,0,51 chr2 201493226 . A C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:11:0,11:1:47,30,0 chr2 201537527 . AAC A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:19:6,13:0.684211:52,0,50 chr2 201565705 . AT A 16.1 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:68:14,9:0.132353:12,0,50 chr2 201565705 . A AT 16.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:68:14,35:0.514706:12,0,15 chr2 201604638 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:19:0,19:1:49,28,0 chr2 201619077 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:88:35,53:0.602273:50,0,50 chr2 201636725 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:16:5,11:0.6875:49,0,45 chr2 201664107 . A AT 23.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:4:0,4:1:21,3,0 chr2 201666413 . G C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:18:8,10:0.555556:44,0,64 chr2 201692979 . C T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:55:0,54:0.981818:53,39,0 chr2 201705509 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:12:0,12:1:53,34,0 chr2 201711098 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:20:0,20:1:50,33,0 chr2 201715647 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:55:0,54:0.981818:56,41,0 chr2 201733390 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:34:0,34:1:50,32,0 chr2 201760892 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:57:0,57:1:56,39,0 chr2 201806658 . C G 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:13:7,6:0.461538:37,0,57 chr2 201847372 . A C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:55:1,54:0.981818:43,26,0 chr2 202074931 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:41:0,41:1:52,37,0 chr2 202090731 . G C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:50,39,0 chr2 202099657 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:51:30,21:0.411765:44,0,55 chr2 202099794 . G C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:22:11,11:0.5:55,0,60 chr2 202099805 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:21:11,10:0.47619:52,0,57 chr2 202100263 . C A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:32:14,18:0.5625:52,0,56 chr2 202100499 . A G 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:19:13,6:0.315789:40,0,60 chr2 202130563 . A C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:32:18,14:0.4375:46,0,54 chr2 202138343 . G GGTGT 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:89:38,41:0.460674:37,0,61 chr2 202202454 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:23:0,23:1:43,39,0 chr2 202376545 . G GGCA 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:44:24,18:0.409091:34,0,50 chr2 202825664 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:14:0,14:1:51,30,0 chr2 202828836 . C G 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:47:0,47:1:58,39,0 chr2 202970859 . CT C 6.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:21:9,5:0.238095:5,0,40 chr2 202970892 . T A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:16,24:0.55814:47,0,52 chr2 203056547 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:19:0,19:1:57,39,0 chr2 203126765 . A G 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:14:8,6:0.428571:38,0,59 chr2 203132147 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:52,39,0 chr2 203197338 . A G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:13:0,13:1:41,22,0 chr2 203246720 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:23:0,23:1:51,36,0 chr2 203251937 . A T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:14:3,11:0.785714:50,0,44 chr2 203251967 . C T 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:27:0,27:1:60,57,0 chr2 203289829 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:37:23,14:0.378378:44,0,56 chr2 203397000 . G C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:53,32,0 chr2 203440370 . T C 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:121:63,58:0.479339:41,0,54 chr2 203441270 . G A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:74:27,46:0.621622:52,0,50 chr2 203457575 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:37:23,14:0.378378:44,0,62 chr2 203491369 . T C 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:21:11,10:0.47619:43,0,61 chr2 203956771 . C T 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:99:71,28:0.282828:33,0,47 chr2 203959560 . T G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:34:0,34:1:52,43,0 chr2 203959601 . A C 15.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:33:26,7:0.212121:15,0,46 chr2 204965268 . C T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:93:0,93:1:57,43,0 chr2 205047680 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:27,22:0.44898:47,0,57 chr2 205104496 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:52:34,18:0.346154:40,0,54 chr2 205113623 . T TGATTTGA 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:28:17,8:0.285714:47,0,65 chr2 205125629 . C T 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:84:59,25:0.297619:36,0,57 chr2 205172194 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:33:0,33:1:51,36,0 chr2 205500013 . T C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:70:31,39:0.557143:43,0,47 chr2 205500067 . C G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:11,10:0.47619:46,0,64 chr2 205553308 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:77:2,75:0.974026:56,48,0 chr2 205610308 . C T 29.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:84:37,47:0.559524:29,0,37 chr2 205697526 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:19:0,19:1:48,31,0 chr2 205725962 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:83:40,42:0.506024:50,0,54 chr2 205727971 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:105:54,50:0.47619:49,0,53 chr2 205743315 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:101:1,100:0.990099:58,43,0 chr2 205745778 . T G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:105:51,54:0.514286:50,0,56 chr2 206009615 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:97:54,43:0.443299:43,0,51 chr2 206046467 . C CA 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:41:21,16:0.390244:58,0,69 chr2 206046504 . G A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:73:34,39:0.534247:59,0,61 chr2 206056727 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:79:45,34:0.43038:51,0,51 chr2 206130286 . A G 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:14:0,14:1:50,27,0 chr2 206141952 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:40:0,40:1:49,38,0 chr2 206142101 . C A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:16:0,16:1:49,31,0 chr2 206144039 . C A 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:53:0,53:1:51,40,0 chr2 206159383 . G C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:22:0,22:1:53,37,0 chr2 206160720 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:65:0,65:1:58,48,0 chr2 206162683 . C CT 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:22:0,22:1:58,47,0 chr2 206176329 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:77:0,77:1:60,44,0 chr2 206176717 . G A 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:40:0,40:1:59,46,0 chr2 206177209 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:27:19,8:0.296296:39,0,50 chr2 206594743 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:61:34,27:0.442623:51,0,55 chr2 206644429 . G A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:82:44,38:0.463415:45,0,50 chr2 206663116 . G T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:96:44,51:0.53125:58,0,53 chr2 206704991 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:20:7,13:0.65:56,0,56 chr2 206741009 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:18:10,8:0.444444:45,0,55 chr2 206969124 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:16:0,16:1:53,38,0 chr2 207123889 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:113:0,112:0.99115:47,36,0 chr2 207134076 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:98:0,98:1:55,37,0 chr2 207166747 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:72:1,70:0.972222:57,52,0 chr2 207613128 . G A 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:41:0,41:1:57,43,0 chr2 207613232 . C T 63 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:51:0,51:1:63,48,0 chr2 207624377 . C A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:110:54,56:0.509091:50,0,50 chr2 207726799 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:24:6,18:0.75:56,0,50 chr2 207768689 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:43:0,43:1:55,45,0 chr2 207769445 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:98:0,97:0.989796:51,36,0 chr2 207828537 . C G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:40:17,23:0.575:53,0,59 chr2 207946373 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:51:27,24:0.470588:55,0,60 chr2 207977240 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:105:0,105:1:55,44,0 chr2 208121661 . A G 66.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:66:0,66:1:66,48,0 chr2 208121913 . T C 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:85:0,85:1:60,43,0 chr2 208124313 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:55:0,55:1:57,54,0 chr2 208142835 . T G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:111:0,111:1:56,46,0 chr2 208145834 . A G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:125:0,125:1:56,48,0 chr2 208146167 . G A 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:50:0,49:0.98:55,39,0 chr2 208165848 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:35:0,35:1:53,38,0 chr2 208170934 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:31:0,31:1:54,39,0 chr2 208171988 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:52:0,52:1:47,38,0 chr2 208172054 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:83:0,83:1:50,41,0 chr2 208237181 . GA G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:27:1,24:0.888889:44,37,0 chr2 208266241 . TG T 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:36:0,36:1:53,41,0 chr2 208304129 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:14:0,14:1:50,33,0 chr2 208320256 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:12:0,12:1:50,32,0 chr2 208320275 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:15:0,15:1:52,29,0 chr2 208325606 . T C 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:99:0,99:1:61,51,0 chr2 208325795 . A T 66.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:85:0,85:1:66,50,0 chr2 208325804 . C G 65.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:90:0,90:1:65,55,0 chr2 208326358 . C A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:48:0,48:1:54,40,0 chr2 208326375 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:62:0,62:1:57,50,0 chr2 208339990 . G A 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:34:18,16:0.470588:54,0,50 chr2 208345103 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:24:0,24:1:57,43,0 chr2 208347983 . G A 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:77:0,77:1:62,52,0 chr2 208350046 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,25:1:56,41,0 chr2 208350724 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:27:0,27:1:49,35,0 chr2 208350862 . A G 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:104:0,104:1:62,45,0 chr2 208450848 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:17,15:0.46875:47,0,57 chr2 208493302 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:55:0,55:1:50,41,0 chr2 209729816 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:12:0,12:1:50,33,0 chr2 209729993 . C CT 46.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:11:0,11:1:46,23,0 chr2 209880957 . C A 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:81:0,81:1:58,50,0 chr2 209978659 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:155:92,63:0.406452:53,0,60 chr2 209982143 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:27:14,13:0.481481:51,0,60 chr2 210016169 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:22,17:0.435897:49,0,53 chr2 210025237 . T G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:27:15,12:0.444444:48,0,62 chr2 210031373 . T A 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:8:4,4:0.5:39,0,55 chr2 210204714 . G A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:5:0,5:1:40,9,0 chr2 210556728 . A ATCT 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:29:0,24:0.827586:58,41,0 chr2 210591913 . A G 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:69:0,69:1:63,53,0 chr2 210591915 . C T 66.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:59:73:0,73:1:66,59,0 chr2 210608346 . G T 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:53:35,18:0.339623:39,0,54 chr2 210616533 . C G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:66:0,66:1:55,40,0 chr2 210648394 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:25:0,25:1:54,39,0 chr2 210650271 . G T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:37:21,16:0.432432:44,0,55 chr2 210656503 . CT C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:118:14,81:0.686441:56,48,0 chr2 210658733 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:100:65,35:0.35:42,0,57 chr2 210668346 . A G 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:123:0,123:1:64,52,0 chr2 210674484 . CA C 7.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:5:1,3:0.6:5,4,0 chr2 210674560 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:45:23,22:0.488889:53,0,56 chr2 210674639 . A G 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:48:31,17:0.354167:39,0,58 chr2 210674926 . G A 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:97:67,30:0.309278:36,0,53 chr2 210675783 . C A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:86:52,34:0.395349:41,0,51 chr2 210677801 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:47:22,25:0.531915:54,0,54 chr2 210679140 . G A 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:11:7,4:0.363636:39,0,57 chr2 211431150 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:12:0,12:1:47,29,0 chr2 211679199 . A G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:48,36:0.428571:46,0,50 chr2 213147681 . A C 64.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:92:0,92:1:64,47,0 chr2 213277907 . G C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:26:0,26:1:57,46,0 chr2 213364068 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:14:0,14:1:50,37,0 chr2 213376151 . G A 14.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:2:0,2:1:13,3,0 chr2 213858315 . T A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:85:60,25:0.294118:44,0,58 chr2 213862497 . A C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:61:27,34:0.557377:52,0,50 chr2 213862643 . C G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:15,17:0.53125:47,0,60 chr2 213930019 . A C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:75:39,36:0.48:48,0,53 chr2 214192421 . G GA 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:17:9,8:0.470588:30,0,54 chr2 214238160 . T C 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:20:15,5:0.25:27,0,52 chr2 214767532 . A G 69.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:97:0,97:1:69,52,0 chr2 214780740 . C G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:101:54,47:0.465347:41,0,50 chr2 214780821 . C G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:88:51,37:0.420455:54,0,55 chr2 214809366 . T G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:13,9:0.409091:43,0,54 chr2 214809599 . C G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:26:11,15:0.576923:54,0,63 chr2 214809617 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:16:8,8:0.5:46,0,63 chr2 214932608 . C T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:61:38,23:0.377049:43,0,58 chr2 214947573 . G A 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:78:48,30:0.384615:42,0,52 chr2 214955289 . G A 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:103:68,34:0.330097:36,0,54 chr2 214968691 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:14,17:0.548387:53,0,53 chr2 214986522 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:34:0,34:1:59,43,0 chr2 214991056 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:76:50,26:0.342105:43,0,46 chr2 214997659 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:29:0,29:1:54,46,0 chr2 215011442 . A T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:54:0,54:1:57,48,0 chr2 215025628 . GTT G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:29:0,29:1:48,42,0 chr2 215037050 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:87:48,39:0.448276:47,0,49 chr2 215064249 . G C 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:30:12,18:0.6:57,0,56 chr2 215075519 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:50,45,0 chr2 215312101 . C T 59.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:85:35,50:0.588235:59,0,56 chr2 215325968 . A C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:73:0,73:1:58,56,0 chr2 215326792 . C T 67.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:46:0,46:1:67,53,0 chr2 215333326 . A G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:21:14,7:0.333333:43,0,62 chr2 215346989 . A T 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:18:0,18:1:62,43,0 chr2 215361919 . A C 24.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:53:38,15:0.283019:24,0,55 chr2 215364948 . G A 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:152:104,48:0.315789:38,0,46 chr2 215367833 . C T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:16,9:0.36:44,0,59 chr2 215370366 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:78:0,78:1:56,47,0 chr2 215375403 . AAC A 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:56:40,16:0.285714:42,0,61 chr2 215378194 . T A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:28,20:0.416667:48,0,58 chr2 215379109 . T C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:34:0,34:1:58,45,0 chr2 215383984 . TAA T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:10,9:0.473684:48,0,64 chr2 215384864 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:69:0,69:1:58,45,0 chr2 215386974 . G A 33.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:92:61,31:0.336957:33,0,56 chr2 215388316 . G C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:35:18,17:0.485714:46,0,55 chr2 215394756 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:23:13,10:0.434783:46,0,57 chr2 215397898 . A C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:79:42,37:0.468354:50,0,52 chr2 215399215 . C CT 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:38:18,20:0.526316:51,0,62 chr2 215404372 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:22:10,12:0.545455:55,0,55 chr2 215404486 . T G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:139:68,71:0.510791:44,0,56 chr2 215404531 . T G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:134:79,55:0.410448:53,0,60 chr2 215407089 . A T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:19:7,12:0.631579:56,0,60 chr2 215408096 . C G 62.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:31:18,13:0.419355:62,0,59 chr2 215408177 . T G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:59:0,59:1:59,59,0 chr2 215408184 . A T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:57:35,22:0.385965:50,0,57 chr2 215410130 . AAC A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:31:54:1,44:0.814815:44,34,52 chr2 215410130 . A AAC 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:54:1,7:0.12963:44,34,47 chr2 215419235 . T A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:39:18,21:0.538462:50,0,60 chr2 215434827 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:33:20,13:0.393939:56,0,61 chr2 215434828 . C A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:33:20,12:0.363636:53,0,63 chr2 215434848 . T TTAC 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:27:16,11:0.407407:57,0,70 chr2 215435759 . T A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:45,44:0.494382:50,0,49 chr2 215945745 . A C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:28:14,14:0.5:50,0,58 chr2 215946984 . G T 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:14:9,5:0.357143:40,0,61 chr2 215955631 . C T 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:17:11,6:0.352941:37,0,55 chr2 215961119 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:26:11,15:0.576923:51,0,60 chr2 215961132 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:30:0,30:1:50,48,0 chr2 215961146 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:38:0,38:1:54,52,0 chr2 216013285 . C G 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:116:0,114:0.982759:59,48,0 chr2 216043956 . C T 15.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:85:64,21:0.247059:15,0,44 chr2 216148178 . A G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:39:0,39:1:59,47,0 chr2 216190377 . G A 5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:31:17,14:0.451613:3,0,40 chr2 216412846 . T G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:33:19,14:0.424242:42,0,48 chr2 216415538 . GTT G 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:106:42,24:0.226415:31,0,81 chr2 216451064 . T C 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:154:82,72:0.467532:43,0,52 chr2 216633567 . C CGCCGCTGCT 9.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:2:0,2:1:7,5,0 chr2 216676859 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:133:0,133:1:52,40,0 chr2 217739524 . A C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:24:0,24:1:51,34,0 chr2 217809974 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:61:0,61:1:56,39,0 chr2 217813859 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:18:8,10:0.555556:54,0,56 chr2 217814876 . T C 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:11,19:0.633333:53,0,49 chr2 217817751 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:66:25,41:0.621212:56,0,53 chr2 217818048 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:110:48,61:0.554545:51,0,56 chr2 217818431 . A G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:66:0,66:1:58,42,0 chr2 217818534 . A G 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:95:57,38:0.4:38,0,46 chr2 217818645 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:102:48,54:0.529412:50,0,50 chr2 217826598 . G C 61.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:100:59,41:0.41:61,0,63 chr2 217826604 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:93:55,38:0.408602:60,0,65 chr2 217827036 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:48:26,22:0.458333:49,0,50 chr2 217829828 . A G 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:82:51,31:0.378049:58,0,67 chr2 217830423 . C T 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:84:40,44:0.52381:52,0,50 chr2 217841225 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:100:54,45:0.45:57,0,62 chr2 217841264 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:111:66,45:0.405405:52,0,58 chr2 217847583 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:84:47,37:0.440476:46,0,52 chr2 217847883 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:66:42,24:0.363636:39,0,52 chr2 217848003 . A G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:106:59,47:0.443396:44,0,54 chr2 217848195 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:71:0,71:1:51,44,0 chr2 217848213 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:73:37,36:0.493151:54,0,61 chr2 217848559 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:128:68,59:0.460938:49,0,52 chr2 217849773 . C T 25.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:82:57,25:0.304878:25,0,44 chr2 217880962 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:128:79,49:0.382813:43,0,57 chr2 217885730 . A AG 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:57:28,29:0.508772:48,0,54 chr2 217893400 . G GCA 16.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:21:10,8:0.380952:16,0,44 chr2 218070576 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:58:31,27:0.465517:52,0,57 chr2 218075536 . C T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:111:52,56:0.504505:42,0,53 chr2 218075695 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:86:53,33:0.383721:47,0,54 chr2 218126282 . G A 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:60:32,27:0.45:46,0,53 chr2 218135587 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:189:109,80:0.42328:46,0,56 chr2 218164385 . C G 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:152:84,68:0.447368:43,0,58 chr2 218238857 . A G 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:40:0,40:1:60,46,0 chr2 218259499 . G A 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:83:0,83:1:60,50,0 chr2 218260198 . T A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:24:0,24:1:55,39,0 chr2 218261086 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:75:0,75:1:58,48,0 chr2 218280092 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:87:0,86:0.988506:57,46,0 chr2 218282080 . G A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:66:0,66:1:57,45,0 chr2 218367084 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:35:0,35:1:51,39,0 chr2 218387907 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:164:86,77:0.469512:50,0,54 chr2 218389899 . A G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:68:0,68:1:60,41,0 chr2 218392965 . T C 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:62:0,62:1:59,42,0 chr2 218401700 . C A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:77:39,38:0.493506:47,0,47 chr2 218403058 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:159:88,71:0.446541:43,0,43 chr2 218403190 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:59:24,35:0.59322:56,0,56 chr2 218429535 . A C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:76:31,45:0.592105:54,0,48 chr2 218431822 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:19,16:0.457143:54,0,49 chr2 218440681 . G C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:14:9,5:0.357143:38,0,58 chr2 218454934 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:43:0,43:1:59,48,0 chr2 218485635 . CAAAA C 20.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:1:29:10,5:0.172414:14,0,39 chr2 218485635 . C CA 20.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:1:29:10,3:0.103448:14,0,39 chr2 218485635 . C CAA 20.8 PASS . GT:GQ:DP:AD:VAF:PL 0/0:1:29:10,3:0.103448:14,0,39 chr2 218581137 . GAA G 26.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:15:11,4:0.266667:26,0,54 chr2 218616081 . G C 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:34:12,22:0.647059:55,0,46 chr2 218622250 . T C 27.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:30:14,16:0.533333:27,0,54 chr2 218628201 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:87:50,37:0.425287:49,0,53 chr2 218636410 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:82:44,38:0.463415:44,0,52 chr2 218636605 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:12,17:0.586207:51,0,45 chr2 218643649 . A T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:74:36,38:0.513514:51,0,50 chr2 218644265 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:71:38,33:0.464789:48,0,54 chr2 218644895 . C A 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:98:50,48:0.489796:42,0,53 chr2 218658710 . T G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:21,16:0.432432:46,0,56 chr2 218662282 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:90:45,44:0.488889:50,0,47 chr2 218668180 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:58:29,29:0.5:54,0,48 chr2 218668182 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:58:30,28:0.482759:52,0,59 chr2 218680586 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:19,18:0.486486:50,0,53 chr2 218690539 . G A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:79:51,28:0.35443:42,0,42 chr2 218697952 . G A 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:102:60,42:0.411765:38,0,48 chr2 218737776 . G C 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:72:47,25:0.347222:40,0,53 chr2 218738096 . G A 59.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:146:69,77:0.527397:59,0,52 chr2 218745053 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:17,9:0.346154:45,0,57 chr2 218745272 . G C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:17:11,6:0.352941:43,0,53 chr2 218745710 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:55:27,28:0.509091:54,0,50 chr2 218747559 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:29:13,16:0.551724:51,0,56 chr2 218827804 . G GC 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:64:0,64:1:59,48,0 chr2 218828067 . A AG 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:45:1,44:0.977778:52,50,0 chr2 218831291 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:19:0,19:1:50,36,0 chr2 218985112 . C A 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:33:20,13:0.393939:30,0,50 chr2 219038536 . T G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:57:29,28:0.491228:46,0,54 chr2 219039001 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:74:44,30:0.405405:56,0,58 chr2 219039065 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:44:32,12:0.272727:45,0,62 chr2 219055315 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:64:0,64:1:57,45,0 chr2 219055690 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:107:58,49:0.457944:48,0,47 chr2 219076341 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:104:59,45:0.432692:47,0,56 chr2 219147854 . G C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:19:10,9:0.473684:46,0,61 chr2 219157352 . A G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:83:51,32:0.385542:46,0,55 chr2 219157454 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:83:0,83:1:54,43,0 chr2 219157713 . G C 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:117:78,38:0.324786:37,0,51 chr2 219157989 . TCTCACACA T 34.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:55:20,32:0.581818:34,19,0 chr2 219160586 . C T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:70:32,38:0.542857:44,0,48 chr2 219169108 . A G 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:66:42,24:0.363636:45,0,54 chr2 219172671 . A G 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:79:0,79:1:58,40,0 chr2 219172944 . A G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:104:57,47:0.451923:50,0,49 chr2 219173034 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:117:56,61:0.521368:53,0,58 chr2 219175608 . A G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:64:35,29:0.453125:45,0,53 chr2 219176369 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:10,13:0.565217:48,0,55 chr2 219176711 . C A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:67:28,39:0.58209:58,0,61 chr2 219176733 . C T 59.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:104:39,64:0.615385:59,0,49 chr2 219180732 . G A 30.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:95:65,30:0.315789:30,0,46 chr2 219181627 . G C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:38:16,22:0.578947:51,0,48 chr2 219182253 . C A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:103:49,54:0.524272:48,0,52 chr2 219182671 . C T 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:27:19,8:0.296296:38,0,51 chr2 219207081 . C G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:45:0,45:1:55,45,0 chr2 219208044 . G T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:71:0,71:1:57,44,0 chr2 219218557 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:65:0,64:0.984615:57,45,0 chr2 219221123 . A G 61.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:162:0,162:1:61,46,0 chr2 219224868 . T TG 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:46:1,45:0.978261:54,49,0 chr2 219248520 . T G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:79:0,79:1:48,38,0 chr2 219253368 . T G 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:28:14,14:0.5:35,0,41 chr2 219253809 . G C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:16:0,16:1:50,32,0 chr2 219254636 . A C 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:7:0,7:1:41,20,0 chr2 219271433 . T C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:158:0,158:1:41,38,0 chr2 219271629 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:57:37,20:0.350877:40,0,56 chr2 219271649 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:70:0,70:1:47,45,0 chr2 219281887 . C CG 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:70:35,35:0.5:45,0,52 chr2 219374812 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:13:7,6:0.461538:51,0,61 chr2 219374839 . C G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:22:11,11:0.5:52,0,64 chr2 219381496 . T C 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:96:0,96:1:60,50,0 chr2 219385600 . C A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:24:0,24:1:60,48,0 chr2 219386104 . G A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:85:0,82:0.964706:60,50,0 chr2 219386456 . T C 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:36:0,36:1:59,43,0 chr2 219399821 . C CAT 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:68:0,68:1:59,44,0 chr2 219418537 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:145:0,145:1:59,52,0 chr2 219418555 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:153:0,153:1:52,48,0 chr2 219420057 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:79:0,78:0.987342:52,43,0 chr2 219451248 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:49:0,49:1:54,42,0 chr2 219451857 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:14:0,14:1:54,32,0 chr2 219466082 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:143:0,143:1:47,34,0 chr2 219469228 . T C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:85:0,85:1:56,41,0 chr2 219492084 . C T 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:53:0,53:1:61,42,0 chr2 219498177 . C G 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:48:0,48:1:51,37,0 chr2 219506459 . T A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:39:0,39:1:60,49,0 chr2 219514838 . C G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:55:0,55:1:53,38,0 chr2 219535229 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:64:33,31:0.484375:51,0,57 chr2 219535339 . GT G 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:30:16,14:0.466667:38,0,57 chr2 219535342 . T G 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:30:16,14:0.466667:40,0,55 chr2 219537029 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:24:0,24:1:55,43,0 chr2 219537902 . G T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:16:8,8:0.5:54,0,58 chr2 219537943 . C A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:27:13,14:0.518519:53,0,60 chr2 219539659 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:30:0,30:1:48,36,0 chr2 219539926 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:84:0,84:1:55,41,0 chr2 219540004 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:47:0,46:0.978723:57,40,0 chr2 219540508 . G A 65.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:62:0,62:1:65,51,0 chr2 219540599 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:53:0,53:1:54,45,0 chr2 219542000 . T C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:69:37,32:0.463768:47,0,54 chr2 219542222 . G A 33.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:12:1,11:0.916667:33,12,0 chr2 219543196 . G T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:26:14,12:0.461538:43,0,48 chr2 219547534 . T C 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:90:0,90:1:60,50,0 chr2 219549294 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:48:0,48:1:57,41,0 chr2 219549297 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:48:0,48:1:59,42,0 chr2 219550873 . GGA G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:83:0,83:1:48,42,0 chr2 219551848 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:35:0,35:1:57,41,0 chr2 219552081 . A T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:32:0,32:1:57,47,0 chr2 219552220 . G C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:73:0,72:0.986301:55,40,0 chr2 219552506 . G T 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:81:0,81:1:59,45,0 chr2 219552544 . C T 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:127:0,127:1:60,46,0 chr2 219554514 . T C 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:52:0,52:1:62,48,0 chr2 219554617 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:78:0,78:1:56,42,0 chr2 219556063 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:87:43,44:0.505747:53,0,57 chr2 219556234 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:95:0,95:1:58,43,0 chr2 219556695 . C G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:93:0,93:1:57,46,0 chr2 219556734 . C A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:38:13,25:0.657895:49,0,50 chr2 219557307 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:69:34,33:0.478261:44,0,53 chr2 219558052 . A G 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:94:61,33:0.351064:29,0,50 chr2 219563659 . A T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:66:0,66:1:57,45,0 chr2 219565481 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:95:0,95:1:49,32,0 chr2 219567987 . A T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:48:0,48:1:57,38,0 chr2 219570312 . A G 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:129:0,129:1:57,48,0 chr2 219570653 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:66:0,66:1:51,31,0 chr2 219571137 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:142:82,60:0.422535:45,0,53 chr2 219575456 . C T 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:47:35,12:0.255319:33,0,52 chr2 219601477 . G T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,20:1:48,36,0 chr2 219601622 . G GT 33.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:94:7,49:0.521277:33,43,0 chr2 219608633 . G A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:88:55,33:0.375:42,0,57 chr2 219611584 . C T 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:28:17,10:0.357143:38,0,59 chr2 219611721 . C T 63.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:85:0,85:1:63,48,0 chr2 219611923 . T C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:29:0,29:1:55,43,0 chr2 219614590 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:57:1,56:0.982456:52,36,0 chr2 219629396 . A C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:71:0,71:1:51,48,0 chr2 219635704 . A G 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:57:0,57:1:57,47,0 chr2 219637645 . A C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:55:0,55:1:56,38,0 chr2 219640543 . T C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:120:0,120:1:58,49,0 chr2 221426182 . A G 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:34:22,12:0.352941:43,0,63 chr2 221436637 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:37:0,37:1:57,43,0 chr2 221442814 . G T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:27,29:0.517857:46,0,52 chr2 221443058 . CAAGATGA C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:12,16:0.571429:50,0,67 chr2 221455707 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:25:0,25:1:55,35,0 chr2 222220114 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:103:63,40:0.38835:48,0,56 chr2 222294294 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:230:123,107:0.465217:49,0,53 chr2 222297170 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:104:0,104:1:55,47,0 chr2 222304431 . G T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:15,11:0.423077:45,0,56 chr2 222558643 . A G 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:67:0,67:1:59,43,0 chr2 222571888 . C T 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:65:0,65:1:59,47,0 chr2 222916299 . AT A 18.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:15:4,11:0.733333:17,6,0 chr2 222922841 . G A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:36:0,36:1:58,41,0 chr2 222934489 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:34:0,34:1:56,42,0 chr2 222941476 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:38:0,38:1:47,40,0 chr2 223052911 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:69:0,69:1:56,44,0 chr2 223053094 . T C 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:54:0,54:1:61,49,0 chr2 223053265 . T G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:34:0,34:1:50,44,0 chr2 223053362 . C G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:19:0,19:1:49,38,0 chr2 223598446 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:107:63,44:0.411215:44,0,56 chr2 223751910 . T C 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:5:0,5:1:38,12,0 chr2 223752775 . TTTTTC T 8.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:18:16,2:0.111111:7,0,46 chr2 223752782 . TTTC T 9.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:12:8,3:0.25:9,0,49 chr2 223765134 . C CT 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:14,14:0.5:49,0,56 chr2 223765159 . C CCAT 48.6 PASS . GT:GQ:DP:AD:VAF:PL 1/0:29:42:3,16:0.380952:48,31,55 chr2 223765159 . C CCATCAT 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:42:3,17:0.404762:48,31,54 chr2 223894189 . C T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:39:0,39:1:54,39,0 chr2 223899099 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:26:0,26:1:50,45,0 chr2 223901177 . G A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:51:0,51:1:60,54,0 chr2 223901239 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:115:60,55:0.478261:53,0,54 chr2 223991933 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:76:43,32:0.421053:50,0,51 chr2 224503604 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:13:8,5:0.384615:37,0,58 chr2 224709933 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:9,14:0.608696:48,0,60 chr2 224765718 . C T 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:69:44,25:0.362319:42,0,54 chr2 224769976 . T G 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:44:0,44:1:61,47,0 chr2 224834212 . C G 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:41:31,10:0.243902:36,0,54 chr2 224837848 . G A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:74:40,34:0.459459:50,0,49 chr2 224854976 . G A 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:103:78,25:0.242718:30,0,55 chr2 224855064 . G GACACAC 23.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:96:1,71:0.739583:23,13,0 chr2 225408973 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:64:42,22:0.34375:48,0,56 chr2 225583019 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:50:22,28:0.56:53,0,46 chr2 225627054 . A C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:46,28:0.378378:47,0,53 chr2 227012321 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:31:21,10:0.322581:41,0,55 chr2 227022057 . A G 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:103:66,37:0.359223:40,0,52 chr2 227022209 . C T 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:35:21,14:0.4:42,0,51 chr2 227025818 . G A 23.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:21:16,5:0.238095:23,0,50 chr2 227027903 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:36:22,14:0.388889:47,0,51 chr2 227028004 . C T 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:83:54,28:0.337349:35,0,60 chr2 227030409 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:19:6,13:0.684211:46,0,48 chr2 227031936 . C G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:15,15:0.5:49,0,57 chr2 227032170 . C T 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:115:68,47:0.408696:43,0,55 chr2 227032260 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:68:42,25:0.367647:52,0,65 chr2 227051116 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:155:92,62:0.4:51,0,59 chr2 227057393 . T A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:28:0,28:1:54,43,0 chr2 227089883 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:64:2,62:0.96875:48,32,0 chr2 227101582 . T TA 39 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:21:1,14:0.666667:38,14,0 chr2 227102885 . ACAATATTTCAGCAATAGGGAAAG A 23.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:10:8,2:0.2:23,0,48 chr2 227103114 . GA G 11.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:12:8,4:0.333333:11,0,43 chr2 227108907 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:31,38:0.550725:46,0,52 chr2 227237964 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:39:19,20:0.512821:53,0,58 chr2 227238007 . G C 69.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:67:38:17,21:0.552632:69,0,71 chr2 227238036 . C A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:31:19,12:0.387097:53,0,56 chr2 227244910 . T TG 34.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:16:3,13:0.8125:34,10,0 chr2 227246719 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:90:0,90:1:53,46,0 chr2 227248459 . A G 64.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:93:0,93:1:64,51,0 chr2 227253687 . T G 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:38:0,38:1:59,45,0 chr2 227254745 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:58:23,35:0.603448:46,0,38 chr2 227263824 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:47:32,15:0.319149:49,0,61 chr2 227263852 . G A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:65:41,24:0.369231:58,0,66 chr2 227266453 . A G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:52:35,17:0.326923:45,0,51 chr2 227267036 . G A 11.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:41:34,7:0.170732:11,0,45 chr2 227284391 . A G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:15:8,7:0.466667:42,0,62 chr2 227293702 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:44,33:0.428571:49,0,43 chr2 227325286 . C G 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,33:1:58,40,0 chr2 227325349 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:33:0,33:1:48,37,0 chr2 227325435 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:10:0,10:1:46,25,0 chr2 227332522 . G A 12.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:53:42,11:0.207547:12,0,41 chr2 227340266 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:16:0,16:1:51,34,0 chr2 227379189 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:123:55,68:0.552846:43,0,57 chr2 227387887 . A ACCACCACAG 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:188:1,169:0.898936:49,48,0 chr2 227387907 . A AGCCACCACAGCG 15.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:130:120,9:0.0692308:14,0,31 chr2 227533706 . A G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:69:43,26:0.376812:46,0,59 chr2 227535065 . C CT 18.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:11:7,4:0.363636:18,0,29 chr2 227598959 . TGTGGTGGTG T 19.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:194:77,91:0.469072:18,0,3 chr2 227598970 . CTGT C 25.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:198:100,97:0.489899:25,0,23 chr2 227598985 . C CGGTGGTGGCTGT 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:200:98,67:0.335:39,0,31 chr2 227599162 . T C 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:64:39,25:0.390625:30,0,41 chr2 227599174 . C T 26.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:61:38,23:0.377049:26,0,40 chr2 227599181 . C A 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:36,32:0.470588:47,0,55 chr2 227599182 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:68:36,32:0.470588:43,0,51 chr2 227608878 . G A 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:197:136,60:0.304569:38,0,48 chr2 227611537 . C G 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:87:0,87:1:61,49,0 chr2 227614598 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:72:0,72:1:50,45,0 chr2 227614658 . T C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:115:65,49:0.426087:41,0,43 chr2 227614740 . A C 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:186:88,98:0.526882:42,0,50 chr2 227617524 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:132:0,132:1:60,52,0 chr2 227696084 . GA G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:75:0,75:1:60,43,0 chr2 227696118 . C CT 16.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:63:46,17:0.269841:16,0,45 chr2 227700940 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:91:50,41:0.450549:52,0,51 chr2 227702382 . C T 35.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:73:50,22:0.30137:35,0,52 chr2 227702395 . AT A 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:65:9,39:0.6:34,0,12 chr2 227714511 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:82:55,27:0.329268:45,0,64 chr2 227714563 . A T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:45,23:0.338235:44,0,61 chr2 227718030 . G A 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:48:0,48:1:61,47,0 chr2 227724438 . G A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:13:6,7:0.538462:49,0,60 chr2 227724479 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:29:17,12:0.413793:53,0,64 chr2 227724482 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:16,14:0.451613:51,0,57 chr2 227724656 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:117:62,55:0.470085:47,0,46 chr2 227728293 . GTCC G 45 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:33:0,33:1:44,38,0 chr2 227728349 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:101:54,47:0.465347:49,0,54 chr2 227728600 . G A 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:43:20,23:0.534884:41,0,50 chr2 227745963 . TGCGGTGGTGGCTGCG T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:138:0,137:0.992754:51,46,0 chr2 227746113 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:97:69,28:0.28866:39,0,37 chr2 227746121 . C T 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:95:63,32:0.336842:30,0,29 chr2 227746186 . A G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:51:0,51:1:56,49,0 chr2 227746253 . C G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:19:0,19:1:56,45,0 chr2 228016747 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:89:49,40:0.449438:44,0,57 chr2 228018313 . A C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:69:0,69:1:59,39,0 chr2 228019005 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:43:0,43:1:52,42,0 chr2 228021697 . TG T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:34:0,34:1:51,32,0 chr2 228108944 . A G 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:53:31,22:0.415094:41,0,52 chr2 228131934 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:22:11,11:0.5:55,0,66 chr2 228131956 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:32:19,13:0.40625:51,0,67 chr2 229270995 . G GC 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:68:0,67:0.985294:59,53,0 chr2 229477263 . AC A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:10,19:0.655172:47,0,55 chr2 229588498 . G GA 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:3,50:0.833333:54,45,0 chr2 229771636 . C A 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:54:29,25:0.462963:37,0,57 chr2 229798860 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:66:0,66:1:58,42,0 chr2 229804142 . T C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:72:44,28:0.388889:42,0,56 chr2 229804252 . G A 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:42:0,41:0.97619:58,53,0 chr2 229804266 . T G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:28:13,15:0.535714:46,0,60 chr2 229840800 . TA T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/0:7:83:16,16:0.192771:52,6,49 chr2 229840800 . T TA 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:83:16,33:0.39759:52,0,63 chr2 229939215 . G A 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:29:21,7:0.241379:32,0,57 chr2 229976358 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:41:18,23:0.560976:48,0,54 chr2 230177560 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:146:84,62:0.424658:49,0,60 chr2 230185999 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:78:0,78:1:58,49,0 chr2 230201006 . A T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:21,22:0.511628:48,0,50 chr2 230207994 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:43:0,43:1:58,37,0 chr2 230211574 . T G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:29:15,14:0.482759:49,0,57 chr2 230212395 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:46:25,21:0.456522:60,0,67 chr2 230212397 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:21,25:0.543478:53,0,67 chr2 230212439 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:30:14,16:0.533333:56,0,66 chr2 230212466 . G C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:26:12,14:0.538462:49,0,62 chr2 230212961 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:132:73,58:0.439394:43,0,50 chr2 230213010 . A G 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:97:0,97:1:61,58,0 chr2 230244944 . T C 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:14:8,6:0.428571:39,0,65 chr2 230245867 . C T 38.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:5:0,5:1:37,8,0 chr2 230251075 . G A 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:32:0,32:1:59,45,0 chr2 230255540 . CG C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:113:11,98:0.867257:51,40,0 chr2 230284393 . G A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:41:0,41:1:57,40,0 chr2 230292797 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:27:0,27:1:56,46,0 chr2 230292812 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:25:0,25:1:55,45,0 chr2 230310834 . T C 22.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:8:0,8:1:22,16,0 chr2 230383546 . C T 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:81:0,81:1:59,48,0 chr2 230393435 . C T 9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:2:0,2:1:6,2,0 chr2 230467084 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:35:0,35:1:49,39,0 chr2 230467181 . G A 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:92:0,92:1:63,53,0 chr2 230469048 . A G 19.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:14:11,3:0.214286:19,0,51 chr2 230494510 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:24:11,13:0.541667:49,0,58 chr2 230498537 . TA T 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:15:1,12:0.8:38,0,14 chr2 230504182 . G T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:23,17:0.425:50,0,59 chr2 230541965 . T C 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:74:0,74:1:60,43,0 chr2 230542804 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:25:0,25:1:60,45,0 chr2 230542948 . C T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:15,10:0.4:44,0,54 chr2 230873453 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:182:91,89:0.489011:49,0,54 chr2 230873548 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:123:79,44:0.357724:50,0,52 chr2 230873554 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:108:69,39:0.361111:48,0,48 chr2 230873603 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:47:27,20:0.425532:50,0,71 chr2 230876996 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:49:21,28:0.571429:52,0,52 chr2 230877996 . T G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:58:28,30:0.517241:48,0,50 chr2 230910129 . G A 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:35,33:0.485294:45,0,59 chr2 230910582 . T G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:39:23,16:0.410256:45,0,49 chr2 230990778 . G T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:16:0,16:1:45,29,0 chr2 230996317 . TCAGCAGCCTAGCCCTGAATCCACACCA T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:188:0,188:1:44,37,0 chr2 231000332 . T C 43.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:19:2,17:0.894737:43,25,0 chr2 231000375 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:37:0,37:1:45,34,0 chr2 231000554 . G T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:26:0,26:1:60,46,0 chr2 231007536 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:21:0,21:1:50,28,0 chr2 231007580 . C G 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:20:0,20:1:62,44,0 chr2 231007668 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:44:0,44:1:58,45,0 chr2 231007810 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:42:0,42:1:52,39,0 chr2 231012604 . G A 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:38,17:0.309091:44,0,58 chr2 231012688 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:59:29,30:0.508475:52,0,62 chr2 231013996 . G A 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:77:51,25:0.324675:34,0,56 chr2 231014025 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:79:56,23:0.291139:47,0,60 chr2 231014160 . T C 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:34:27,7:0.205882:41,0,51 chr2 231014173 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:32:26,6:0.1875:44,0,52 chr2 231037601 . T C 27.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:9:4,5:0.555556:27,0,28 chr2 231165841 . G A 60.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:57:22,35:0.614035:60,0,59 chr2 231170715 . G A 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:95:57,38:0.4:44,0,54 chr2 231198852 . C G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:69:43,26:0.376812:43,0,52 chr2 231222761 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:30:0,30:1:50,46,0 chr2 231222762 . T A 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:30:0,30:1:59,51,0 chr2 231331760 . T A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:15:0,15:1:44,29,0 chr2 231331852 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:33:0,33:1:53,37,0 chr2 231331885 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:20:0,20:1:47,34,0 chr2 231345858 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:23,32:0.581818:53,0,44 chr2 231395826 . T G 36.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:55:0,55:1:36,34,0 chr2 231398416 . G A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:90:2,88:0.977778:60,50,0 chr2 231404173 . A C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:66:0,66:1:48,36,0 chr2 231463970 . C T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:73:0,73:1:57,42,0 chr2 231593732 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:54:0,54:1:60,43,0 chr2 231710097 . C G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:31,22:0.415094:47,0,52 chr2 231788771 . A ACT 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:22:9,7:0.318182:48,0,63 chr2 232334774 . C T 21.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:30:17,13:0.433333:21,0,30 chr2 232336618 . A G 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:43:25,18:0.418605:39,0,54 chr2 232378950 . T C 27.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:71:40,31:0.43662:27,0,43 chr2 232379271 . A T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:106:52,54:0.509434:49,0,51 chr2 232379876 . C G 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:109:56,53:0.486239:39,0,52 chr2 232380380 . A G 17.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:63:34,29:0.460317:17,0,46 chr2 232380431 . T C 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:113:60,53:0.469027:30,0,49 chr2 232480281 . T G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:69:31,38:0.550725:42,0,41 chr2 232484878 . G A 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:99:0,99:1:60,44,0 chr2 232485290 . C G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:69:0,69:1:43,36,0 chr2 232520686 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:67:36,31:0.462687:55,0,54 chr2 232521873 . T C 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:44,32:0.421053:43,0,49 chr2 232524103 . T G 62.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:94:0,93:0.989362:62,48,0 chr2 232525208 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:61:22,39:0.639344:52,0,49 chr2 232531315 . G A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:48:29,19:0.395833:45,0,56 chr2 232542410 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:61:33,28:0.459016:52,0,52 chr2 232551268 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:141:67,74:0.524823:47,0,47 chr2 232556574 . CT C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:28:1,27:0.964286:50,42,0 chr2 232564217 . G C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:29:16,13:0.448276:48,0,55 chr2 232735194 . A C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:44:27,17:0.386364:43,0,52 chr2 232768750 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:20,29:0.591837:48,0,51 chr2 232776373 . G C 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:30:0,30:1:54,46,0 chr2 232844096 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:37,22:0.372881:48,0,52 chr2 232847339 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:13:6,7:0.538462:47,0,64 chr2 232847516 . CACA C 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:68:38,29:0.426471:43,0,57 chr2 232847538 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:53:30,23:0.433962:47,0,63 chr2 232847586 . G A 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:15:10,5:0.333333:32,0,63 chr2 232856745 . G A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:37:26,11:0.297297:53,0,62 chr2 232856815 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:82:46,36:0.439024:52,0,62 chr2 232870110 . C T 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:123:86,37:0.300813:22,0,36 chr2 232885364 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:79:49,30:0.379747:47,0,52 chr2 232885408 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:47:32,15:0.319149:48,0,69 chr2 232892987 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:114:0,114:1:57,47,0 chr2 232920305 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:57:28,29:0.508772:54,0,59 chr2 232970265 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:30:0,30:1:53,35,0 chr2 233034416 . C A 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:78:45,33:0.423077:40,0,52 chr2 233060456 . G A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:38:0,38:1:55,41,0 chr2 233125702 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:24:11,13:0.541667:46,0,49 chr2 233146227 . G A 14 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:102:78,24:0.235294:13,0,42 chr2 233146343 . T G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:19,16:0.457143:52,0,57 chr2 233146358 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:48:31,17:0.354167:57,0,66 chr2 233158323 . C G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:34,16:0.32:48,0,62 chr2 233158443 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:30:12,18:0.6:51,0,54 chr2 233169410 . AC A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:66:39,27:0.409091:43,0,45 chr2 233182512 . T C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:43:0,43:1:55,39,0 chr2 233184389 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:37:20,17:0.459459:52,0,55 chr2 233198424 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:29:13,16:0.551724:46,0,50 chr2 233264857 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:31:0,31:1:55,45,0 chr2 233272947 . G C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:14:0,14:1:48,33,0 chr2 233274722 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:22:0,22:1:52,35,0 chr2 233274822 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:7:0,7:1:40,14,0 chr2 233327103 . G C 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:38:0,38:1:58,40,0 chr2 233329608 . T G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:19:0,19:1:47,30,0 chr2 233346901 . G A 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:41:0,41:1:63,48,0 chr2 233357275 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:193:124,68:0.352332:52,0,55 chr2 233386145 . G C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:27,24:0.470588:48,0,59 chr2 233437358 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:45:17,28:0.622222:52,0,51 chr2 233464121 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:31,28:0.474576:51,0,48 chr2 233477372 . A G 35.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:39:23,16:0.410256:35,0,51 chr2 233477488 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:32,21:0.396226:47,0,54 chr2 233485841 . G A 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:115:69,46:0.4:42,0,59 chr2 233485923 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:112:65,47:0.419643:48,0,57 chr2 233487896 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:188:119,69:0.367021:51,0,52 chr2 233496728 . A C 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:24:16,8:0.333333:42,0,57 chr2 233498514 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:25:16,9:0.36:46,0,57 chr2 233512637 . A AATATTATTTTTCTTAGT 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:15:7,7:0.466667:50,0,56 chr2 233521093 . T TTTC 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:23,20:0.465116:50,0,55 chr2 233523371 . A G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:98:64,34:0.346939:41,0,56 chr2 233524478 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:32:20,12:0.375:41,0,53 chr2 233540670 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:65:41,24:0.369231:47,0,57 chr2 233540816 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:41:22,19:0.463415:47,0,59 chr2 233561018 . T C 31.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:12:9,3:0.25:31,0,59 chr2 233618472 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:18,43:0.704918:48,0,43 chr2 233637215 . C T 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:83:56,27:0.325301:39,0,58 chr2 233681970 . C A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:47:25,22:0.468085:48,0,52 chr2 233682324 . T G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:15:0,15:1:47,40,0 chr2 233682328 . C A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:14:0,14:1:48,33,0 chr2 233682329 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:14:0,14:1:48,29,0 chr2 233682559 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:23,20:0.465116:49,0,52 chr2 233682693 . G A 60.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:27:9,18:0.666667:60,0,50 chr2 233693023 . T G 8.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:60:47,13:0.216667:7,0,46 chr2 233693319 . A G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:29,27:0.482143:46,0,56 chr2 233693545 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:120:58,62:0.516667:45,0,53 chr2 233693556 . A C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:105:50,55:0.52381:50,0,58 chr2 233713783 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:85:50,35:0.411765:50,0,57 chr2 233719291 . T C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:84:0,84:1:47,36,0 chr2 233729157 . T C 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:52:31,21:0.403846:36,0,58 chr2 233729207 . G A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:65:35,30:0.461538:41,0,55 chr2 233729266 . T C 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:69:26,43:0.623188:32,0,54 chr2 233729603 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:77:43,34:0.441558:47,0,51 chr2 233743701 . C G 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:114:65,49:0.429825:42,0,51 chr2 233760233 . C CAT 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:23,23:0.469388:49,0,51 chr2 233779390 . C A 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:79:0,79:1:56,46,0 chr2 233793813 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:80:35,45:0.5625:53,0,51 chr2 233794490 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:83:43,39:0.46988:54,0,51 chr2 233795672 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:121:74,47:0.38843:46,0,47 chr2 233795961 . C T 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:48:30,18:0.375:42,0,51 chr2 233796044 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:51:0,50:0.980392:59,50,0 chr2 233800222 . G C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:42:0,42:1:54,40,0 chr2 233800354 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:16:0,16:1:50,28,0 chr2 233802185 . G C 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:58:0,58:1:57,38,0 chr2 233802362 . G T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:27:0,27:1:55,47,0 chr2 233804006 . C A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:18:0,18:1:51,36,0 chr2 233805060 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:35:0,35:1:49,38,0 chr2 233807780 . G A 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:92:0,92:1:60,45,0 chr2 233816856 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:50:0,50:1:53,43,0 chr2 233817970 . A T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:44:19,25:0.568182:53,0,46 chr2 233818604 . T G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:13,11:0.458333:43,0,52 chr2 233819340 . C T 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:88:47,41:0.465909:42,0,49 chr2 233819432 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:73:0,73:1:54,50,0 chr2 233822161 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:92:49,43:0.467391:56,0,56 chr2 233823671 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:47:25,22:0.468085:51,0,52 chr2 233828726 . C A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:89:40,49:0.550562:48,0,48 chr2 233841734 . C T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:138:70,67:0.485507:47,0,49 chr2 233841896 . G C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:117:67,49:0.418803:47,0,58 chr2 233842185 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:56:31,25:0.446429:51,0,57 chr2 233845860 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:14:7,7:0.5:49,0,52 chr2 233853834 . A T 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:74:31,43:0.581081:54,0,50 chr2 233937554 . G A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:39:0,39:1:61,46,0 chr2 233981747 . G T 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:16:0,16:1:54,35,0 chr2 234058895 . T A 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:76:0,76:1:60,47,0 chr2 235041233 . T C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:67:42,25:0.373134:46,0,61 chr2 235041276 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:61:32,29:0.47541:54,0,56 chr2 235041358 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:54:25,29:0.537037:54,0,57 chr2 235041543 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:81:2,79:0.975309:53,40,0 chr2 235041640 . A C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:61:36,25:0.409836:52,0,53 chr2 235043175 . A G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:51:0,51:1:56,44,0 chr2 235052780 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:40:21,19:0.475:51,0,58 chr2 235670673 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:15,16:0.516129:49,0,51 chr2 235799522 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:59:0,59:1:52,44,0 chr2 235852752 . C T 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:114:0,114:1:62,47,0 chr2 235908692 . CT C 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:29:6,15:0.517241:37,0,34 chr2 235930972 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:33:0,33:1:55,39,0 chr2 236049178 . G A 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:67:0,67:1:61,45,0 chr2 236238000 . TGTG T 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:20:8,12:0.6:47,0,60 chr2 236241298 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:58:30,28:0.482759:46,0,56 chr2 236241523 . A C 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:44:24,20:0.454545:42,0,55 chr2 236441168 . CT C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:26:14,12:0.461538:51,0,63 chr2 237324840 . G A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:91:44,47:0.516484:42,0,48 chr2 237334649 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:48:0,48:1:51,35,0 chr2 237334821 . C G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:103:0,103:1:58,48,0 chr2 237336320 . A G 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:116:0,116:1:60,48,0 chr2 237340987 . C T 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:81:0,81:1:61,45,0 chr2 237350171 . C G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:72:0,72:1:56,39,0 chr2 237366926 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:82:43,39:0.47561:51,0,55 chr2 237413936 . A G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:34:18,16:0.470588:47,0,49 chr2 237414242 . G C 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:30:0,29:0.966667:49,38,0 chr2 237516780 . A AATGG 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:164:22,123:0.75:38,0,24 chr2 237542524 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:28:12,16:0.571429:48,0,47 chr2 237586099 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:55,52:0.485981:51,0,49 chr2 237627612 . C G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:13:5,8:0.615385:42,0,36 chr2 237627749 . T G 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:11:5,6:0.545455:28,0,40 chr2 237729763 . T A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:69:33,36:0.521739:48,0,46 chr2 237729888 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:52:19,33:0.634615:56,0,60 chr2 237753511 . A G 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:11,19:0.633333:45,0,53 chr2 237758858 . G GA 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:17:8,8:0.470588:43,0,61 chr2 237760159 . A G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:56:35,21:0.375:44,0,54 chr2 237762685 . A G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:66:37,29:0.439394:46,0,51 chr2 237764060 . C G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:108:68,40:0.37037:46,0,48 chr2 237994757 . G A 30 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:42:33,9:0.214286:30,0,51 chr2 238061016 . C T 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:9:5,4:0.444444:32,0,44 chr2 238091242 . T C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:78:50,28:0.358974:41,0,50 chr2 238098238 . C T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:105:61,44:0.419048:48,0,51 chr2 238102049 . C A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:51:31,20:0.392157:51,0,61 chr2 238102078 . T C 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:28,18:0.391304:54,0,62 chr2 238107898 . C G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:178:103,75:0.421348:41,0,53 chr2 238107999 . G T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:63:30,33:0.52381:50,0,53 chr2 238116882 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:22:10,12:0.545455:54,0,51 chr2 238125260 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:51:30,21:0.411765:44,0,53 chr2 238125402 . A C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:35:25,10:0.285714:38,0,58 chr2 238127775 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:41:23,17:0.414634:50,0,57 chr2 238130271 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:17,15:0.46875:48,0,53 chr2 238130416 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:21,13:0.382353:49,0,53 chr2 238130434 . G T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:18,16:0.470588:52,0,55 chr2 238130542 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:65:37,28:0.430769:46,0,53 chr2 238130996 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:50:0,50:1:56,45,0 chr2 238131138 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:74:48,26:0.351351:43,0,50 chr2 238131255 . G C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:58:0,58:1:55,40,0 chr2 238131546 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:41:0,41:1:57,47,0 chr2 238131577 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:22,14:0.388889:47,0,56 chr2 238131702 . G A 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:34:19,15:0.441176:41,0,43 chr2 238132067 . C A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:79:0,79:1:55,40,0 chr2 238140899 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:78:36,42:0.538462:56,0,62 chr2 238141392 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:25,23:0.479167:48,0,54 chr2 238141501 . G A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:39:16,23:0.589744:45,0,48 chr2 238142909 . T C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:68:0,68:1:48,33,0 chr2 238145863 . G T 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:30:0,30:1:56,38,0 chr2 238150843 . T C 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:97:0,97:1:60,45,0 chr2 238173525 . G GC 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:26,23:0.469388:47,0,55 chr2 238185147 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:11,15:0.576923:54,0,51 chr2 238239894 . G C 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:60:30,27:0.45:33,0,44 chr2 238246412 . C T 24.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:112:74,38:0.339286:24,0,44 chr2 238320731 . C A 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:89:0,89:1:63,44,0 chr2 238329312 . G T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:142:0,142:1:57,43,0 chr2 238334078 . G GT 11.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:14:2,7:0.5:11,26,0 chr2 238847617 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:71:38,33:0.464789:52,0,54 chr2 238887081 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:93:57,36:0.387097:48,0,61 chr2 238887130 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:107:39,68:0.635514:57,0,55 chr2 238910401 . A T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:90:39,51:0.566667:49,0,59 chr2 239095075 . C T 35.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:46:29,16:0.347826:35,0,62 chr2 239108040 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:61:0,61:1:55,45,0 chr2 239134205 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:30,37:0.544118:50,0,48 chr2 239144721 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:74:0,74:1:55,50,0 chr2 239156792 . C G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:59:28,31:0.525424:43,0,41 chr2 239176372 . G A 27.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:13:7,6:0.461538:27,0,34 chr2 239189825 . C T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:87:48,39:0.448276:53,0,59 chr2 239578479 . T C 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:195:0,195:1:59,50,0 chr2 239578555 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:273:148,124:0.454212:56,0,53 chr2 239578719 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:181:0,180:0.994475:60,45,0 chr2 239578743 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:140:0,140:1:56,48,0 chr2 239938329 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:18:7,11:0.611111:48,0,48 chr2 239938401 . G C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:40:19,21:0.525:55,0,62 chr2 239938500 . A G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:51:27,24:0.470588:42,0,54 chr2 239938652 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:36:20,16:0.444444:56,0,66 chr2 239938687 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:28:15,13:0.464286:53,0,68 chr2 239938703 . G C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:20:13,7:0.35:49,0,62 chr2 239950926 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:72:46,26:0.361111:52,0,60 chr2 239950974 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:61:40,21:0.344262:57,0,68 chr2 240017826 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:85:42,43:0.505882:52,0,47 chr2 240022311 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:203:128,75:0.369458:47,0,51 chr2 240025297 . G C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:89:43,46:0.516854:49,0,47 chr2 240029595 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:54:21,33:0.611111:52,0,43 chr2 240140467 . A T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:34,22:0.392857:45,0,61 chr2 240436110 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:17,19:0.527778:47,0,52 chr2 240462256 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:123:65,58:0.471545:52,0,54 chr2 240462324 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:98:61,37:0.377551:45,0,59 chr2 240464900 . C T 38 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:69:43,25:0.362319:38,0,55 chr2 240465082 . C T 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:94:61,33:0.351064:42,0,50 chr2 240466037 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:42:19,23:0.547619:57,0,58 chr2 240466062 . C T 62.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:63:29,34:0.539683:62,0,62 chr2 240466111 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:95:1,93:0.978947:55,54,0 chr2 240466191 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:86:46,40:0.465116:48,0,51 chr2 240469017 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:75:49,26:0.346667:46,0,62 chr2 240469130 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:108:58,50:0.462963:55,0,55 chr2 240500603 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:34:16,18:0.529412:56,0,63 chr2 240511933 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:62:31,31:0.5:54,0,54 chr2 240512781 . T C 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:43:0,43:1:59,54,0 chr2 240512795 . T C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:61:0,61:1:52,42,0 chr2 240525844 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:65:34,31:0.476923:44,0,49 chr2 240529458 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:93:53,40:0.430108:51,0,53 chr2 240557150 . A G 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:9:1,8:0.888889:36,0,9 chr2 240598004 . G A 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:55:0,55:1:59,40,0 chr2 240598657 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:82:0,82:1:50,43,0 chr2 240616367 . G T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:28:0,28:1:52,43,0 chr2 240618980 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:84:0,84:1:58,43,0 chr2 240629912 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:26:0,26:1:54,40,0 chr2 240630832 . A C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:66:0,66:1:56,44,0 chr2 240680197 . C T 19.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:71:1,69:0.971831:19,26,0 chr2 240682770 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:122:43,79:0.647541:46,0,42 chr2 240682792 . T C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:113:0,113:1:45,43,0 chr2 240692248 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:49:0,48:0.979592:47,33,0 chr2 240719951 . C A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:138:0,138:1:56,43,0 chr2 240741227 . G C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:21,22:0.511628:50,0,51 chr2 240741404 . T C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:17,13:0.433333:48,0,53 chr2 240746169 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:123:63,60:0.487805:53,0,52 chr2 240747219 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:109:49,59:0.541284:53,0,52 chr2 240757423 . ATCC A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:80:3,70:0.875:49,31,0 chr2 240760890 . G T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:9:5,4:0.444444:47,0,53 chr2 240763144 . T A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:81:0,81:1:60,45,0 chr2 240769258 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:31:17,14:0.451613:50,0,54 chr2 240774229 . A G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:97:0,96:0.989691:60,48,0 chr2 240787229 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:38:0,38:1:52,40,0 chr2 240797600 . C A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:12,14:0.538462:48,0,52 chr2 240820279 . C T 4.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:3:1,2:0.666667:2,0,28 chr2 240869408 . AGGCCTCCCT A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:17:0,17:1:48,29,0 chr2 240875890 . C T 63.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:56:0,56:1:63,51,0 chr2 240875891 . A G 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:56:0,56:1:60,45,0 chr2 240878862 . C A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:35:0,35:1:51,28,0 chr2 240888279 . A G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:13:0,13:1:45,27,0 chr2 240888595 . T C 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:88:0,88:1:59,48,0 chr2 240888617 . A G 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:72:0,72:1:60,50,0 chr2 240891527 . G T 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:23:0,23:1:56,42,0 chr2 240891552 . G A 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:42:0,42:1:62,48,0 chr2 240891588 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:53:0,53:1:57,50,0 chr2 240891847 . G A 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:40:0,39:0.975:58,35,0 chr2 240891879 . C G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:52:0,52:1:54,42,0 chr2 240895527 . T C 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:58:0,58:1:60,49,0 chr2 240895962 . G A 64.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:34:0,34:1:64,45,0 chr2 240896004 . A G 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:26:0,26:1:62,52,0 chr2 240896015 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:50,38,0 chr2 240906483 . A C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:52:0,52:1:56,42,0 chr2 240919020 . AGTCCTGGGCCCGGGGCTGGGCAAGGTGATGGCGTGGGGGACG A 33.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:42:0,41:0.97619:33,31,0 chr2 240925739 . T C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:46:26,20:0.434783:44,0,52 chr2 240926972 . T C 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:72:43,29:0.402778:46,0,51 chr2 240933180 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:65:34,31:0.476923:49,0,53 chr2 240950520 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:18,17:0.485714:50,0,52 chr2 240959407 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:70:38,31:0.442857:48,0,54 chr2 240964584 . G C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:34,33:0.492537:54,0,53 chr2 240965364 . C T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:33:14,19:0.575758:49,0,58 chr2 240966362 . A G 29.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:53:35,14:0.264151:29,0,46 chr2 240983013 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:54:22,32:0.592593:50,0,45 chr2 240989811 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:59:28,31:0.525424:46,0,56 chr2 241037198 . CG C 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:12:5,7:0.583333:38,0,54 chr2 241040133 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:64:34,30:0.46875:52,0,52 chr2 241052458 . G A 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:114:68,45:0.394737:36,0,50 chr2 241064070 . C T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:94:51,43:0.457447:45,0,50 chr2 241064141 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:30:0,30:1:50,46,0 chr2 241065450 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:77:40,37:0.480519:53,0,60 chr2 241071669 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:101:62,39:0.386139:46,0,49 chr2 241071736 . A G 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:51:0,51:1:50,46,0 chr2 241071915 . C A 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:40:26,14:0.35:34,0,45 chr2 241074287 . TC T 42.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:32:1,29:0.90625:42,32,0 chr2 241089326 . A G 16.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:44:34,10:0.227273:16,0,42 chr2 241090322 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:52:36,16:0.307692:40,0,57 chr2 241094355 . T A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:67:29,38:0.567164:52,0,55 chr2 241122715 . C G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:18,24:0.571429:50,0,57 chr2 241126186 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:83:41,42:0.506024:54,0,55 chr2 241126899 . T C 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:75:43,32:0.426667:44,0,45 chr2 241132865 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:32:18,14:0.4375:43,0,52 chr2 241133276 . A C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:127:60,67:0.527559:55,0,55 chr2 241133281 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:136:66,70:0.514706:57,0,57 chr2 241133283 . T G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:135:64,71:0.525926:57,0,56 chr2 241138081 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:52:31,21:0.403846:48,0,53 chr2 241142807 . C A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:33:18,14:0.424242:47,0,68 chr2 241142847 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:93:53,40:0.430108:51,0,62 chr2 241143065 . A C 60 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:60:32,28:0.466667:60,0,60 chr2 241150035 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:82:34,48:0.585366:48,0,49 chr2 241150158 . A G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:64:30,34:0.53125:46,0,52 chr2 241190072 . G T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:75:40,35:0.466667:50,0,56 chr2 241200076 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:47:0,47:1:53,33,0 chr2 241201370 . C G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:116:71,45:0.387931:43,0,47 chr2 241202304 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:35:0,35:1:50,36,0 chr2 241209595 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:111:61,50:0.45045:47,0,55 chr2 241209658 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:49:0,49:1:55,53,0 chr2 241212170 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:98:51,46:0.469388:51,0,57 chr2 241217813 . G T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:82:42,40:0.487805:49,0,49 chr2 241223944 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:80:43,37:0.4625:48,0,61 chr2 241224123 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:121:52,69:0.570248:55,0,50 chr2 241239719 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:111:62,49:0.441441:54,0,49 chr2 241253433 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:79:45,34:0.43038:54,0,59 chr2 241267541 . C T 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:34:0,34:1:59,43,0 chr2 241270993 . A G 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:44:26,18:0.409091:45,0,50 chr2 241373157 . G A 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:40:30,10:0.25:32,0,56 chr2 241460078 . C G 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:34:21,13:0.382353:39,0,50 chr2 241495627 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:59:30,29:0.491525:47,0,45 chr2 241633431 . A G 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:55:0,55:1:62,50,0 chr2 241666621 . G C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:52:0,52:1:55,43,0 chr2 241671358 . T A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:169:0,169:1:60,46,0 chr2 241678635 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:29:0,29:1:51,31,0 chr2 241690633 . G A 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:64:43,21:0.328125:38,0,52 chr2 241734689 . A G 44.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:21:0,21:1:44,35,0 chr2 241735544 . T G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:77:0,77:1:59,41,0 chr2 241741015 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:38:17,21:0.552632:50,0,43 chr2 241744700 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:122:64,58:0.47541:52,0,57 chr2 241745530 . A G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:47,29:0.381579:43,0,55 chr2 241745694 . T C 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:141:88,53:0.375887:39,0,51 chr2 241748788 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:25:14,11:0.44:51,0,56 chr2 241748877 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:50,34:0.404762:47,0,60 chr2 241748951 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:80:52,28:0.35:52,0,65 chr2 241749019 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:38:22,16:0.421053:54,0,60 chr2 241749027 . T TC 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:24:13,11:0.458333:56,0,57 chr2 241749257 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:188:97,91:0.484043:55,0,56 chr2 241749455 . T C 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:129:76,53:0.410853:44,0,52 chr2 241751330 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:71:41,30:0.422535:48,0,54 chr2 241767686 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:11,16:0.592593:53,0,45 chr2 241776965 . A T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:95:45,49:0.515789:46,0,45 chr2 241816085 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:158:0,158:1:60,48,0 chr2 241816271 . A G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:133:0,132:0.992481:56,41,0 chr2 241816494 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:78:36,42:0.538462:49,0,55 chr2 241816611 . C G 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:51:25,26:0.509804:39,0,51 chr2 241816877 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:119:0,119:1:54,42,0 chr2 241817000 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:98:1,97:0.989796:59,42,0 chr2 241819297 . C T 6.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:112:64,48:0.428571:5,10,0 chr2 241819312 . G A 10 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:110:75,35:0.318182:9,20,0 chr2 241819441 . G C 33.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:156:118,33:0.211538:33,0,47 chr2 241819468 . C T 22.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:113:27,84:0.743363:22,17,0 chr2 241819501 . A G 30 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:52:2,50:0.961538:29,27,0 chr2 241819502 . T C 5.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:53:42,10:0.188679:3,0,11 chr2 241819559 . C T 7.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:7:2,3:0.428571:6,14,0 chr2 241819578 . C CAT 28.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:20:2,13:0.65:28,31,0 chr2 241819943 . T C 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:112:7,101:0.901786:39,43,0 chr2 241851121 . A G 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:127:74,52:0.409449:43,0,50 chr2 241894384 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:15,11:0.423077:50,0,62 chr3 319825 . C T 35.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:4:0,4:1:34,6,0 chr3 326074 . G C 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:48:0,48:1:53,46,0 chr3 328368 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:0,25:1:50,39,0 chr3 344564 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:24:7,17:0.708333:57,0,58 chr3 349318 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:24:14,10:0.416667:46,0,58 chr3 349417 . A G 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:65:48,17:0.261538:32,0,51 chr3 361662 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:32:0,32:1:59,49,0 chr3 398280 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:37:0,36:0.972973:56,37,0 chr3 398345 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:33:0,32:0.969697:59,44,0 chr3 398405 . T A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:23:0,22:0.956522:54,34,0 chr3 401619 . T C 39.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:33:23,10:0.30303:39,0,57 chr3 1297996 . GGTTTTT G 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:40:17,23:0.575:40,0,54 chr3 1327594 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:15:6,9:0.6:47,0,56 chr3 1358458 . AT A 12 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:23:7,12:0.521739:11,0,29 chr3 1383166 . T G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:13,16:0.551724:49,0,57 chr3 2656592 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:9:0,9:1:36,23,0 chr3 2656607 . A G 38.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:8:0,8:1:38,12,0 chr3 3034717 . C T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:71:50,21:0.295775:44,0,56 chr3 3034759 . A G 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:48:38,10:0.208333:32,0,52 chr3 3037156 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:33:15,18:0.545455:52,0,51 chr3 3040066 . A T 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:33:0,33:1:59,46,0 chr3 3040141 . T C 64.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:56:0,56:1:64,48,0 chr3 3074754 . G A 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:31:0,31:1:57,46,0 chr3 3095471 . A AT 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:12:6,6:0.5:37,0,39 chr3 3098273 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:83:46,37:0.445783:50,0,53 chr3 3127506 . A T 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:66:0,66:1:62,45,0 chr3 3127739 . T A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:35:0,35:1:51,32,0 chr3 3129108 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:85:0,85:1:60,43,0 chr3 3129226 . A G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:26:0,26:1:50,40,0 chr3 3147595 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:44:0,44:1:53,48,0 chr3 3147714 . A G 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:31:0,31:1:62,48,0 chr3 3150840 . A ATAAC 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:40:4,34:0.85:55,43,0 chr3 3156187 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:36:0,36:1:55,44,0 chr3 3174270 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:39:0,39:1:55,45,0 chr3 3844896 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:53:0,53:1:59,44,0 chr3 3845409 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:61,43:0.413462:48,0,62 chr3 3846192 . T C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:72:33,39:0.541667:48,0,47 chr3 4068016 . A C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:38:0,38:1:49,36,0 chr3 4068047 . C T 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:34:0,34:1:59,43,0 chr3 4068756 . T TAAG 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:36:0,36:1:53,38,0 chr3 4313013 . G A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:86:49,37:0.430233:43,0,50 chr3 4316526 . A G 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:51:37,14:0.27451:30,0,48 chr3 4362133 . T A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:78:0,78:1:60,43,0 chr3 4362134 . T C 64 PASS . GT:GQ:DP:AD:VAF:PL 0/1:61:76:36,40:0.526316:63,0,63 chr3 4362153 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:107:0,107:1:53,47,0 chr3 4420014 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:23:0,23:1:54,42,0 chr3 4494442 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:79:40,39:0.493671:53,0,56 chr3 4520983 . T G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:22:14,8:0.363636:41,0,59 chr3 4652253 . G C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:55:29,26:0.472727:51,0,55 chr3 4725578 . T C 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:172:1,170:0.988372:59,43,0 chr3 4775373 . T C 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:108:76,32:0.296296:29,0,51 chr3 4788048 . A G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:105:0,105:1:58,47,0 chr3 4800547 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:88:41,47:0.534091:48,0,53 chr3 4814496 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:135:0,135:1:57,50,0 chr3 4814550 . G A 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:129:0,129:1:61,44,0 chr3 4818041 . G A 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:0,24:1:58,40,0 chr3 4836735 . CTTTTTTTTTTT C 3.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:81:16,6:0.0740741:1,0,57 chr3 4983086 . T C 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:92:58,34:0.369565:36,0,48 chr3 5199624 . C A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:40:0,40:1:54,38,0 chr3 6861914 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:31:0,31:1:57,47,0 chr3 7146429 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:59:34,25:0.423729:56,0,59 chr3 7452558 . TTGTGTGTGTG T 21.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:17:3,7:0.411765:21,0,53 chr3 7578481 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:101:56,45:0.445545:47,0,56 chr3 7578695 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:26,36:0.580645:51,0,51 chr3 7579102 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:45:0,45:1:58,52,0 chr3 7579141 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:47:28,19:0.404255:47,0,56 chr3 7579406 . T A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:6:3,3:0.5:43,0,52 chr3 8502027 . G GT 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:50:7,43:0.86:55,38,0 chr3 8514931 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:56:0,56:1:54,41,0 chr3 8626210 . T C 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:87:0,87:1:62,55,0 chr3 8627681 . TG T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:58:0,58:1:47,37,0 chr3 8633632 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:21:0,21:1:54,30,0 chr3 8634518 . A G 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:82:42,39:0.47561:40,0,56 chr3 8635259 . T C 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:34:21,13:0.382353:37,0,49 chr3 8652064 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:56:35,21:0.375:44,0,56 chr3 8715625 . G C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:54:35,19:0.351852:44,0,48 chr3 8715691 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:22,20:0.47619:51,0,60 chr3 8715861 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:31:17,14:0.451613:46,0,52 chr3 8733975 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:70:36,34:0.485714:52,0,48 chr3 8767498 . G A 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:62:39,23:0.370968:43,0,61 chr3 8768017 . G A 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:21:0,20:0.952381:47,28,0 chr3 8913705 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:16:0,16:1:46,27,0 chr3 8963394 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:30:1,29:0.966667:55,33,0 chr3 8990475 . T G 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:17:9,8:0.470588:46,0,51 chr3 8992874 . C T 60 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:88:39,49:0.556818:60,0,60 chr3 8994326 . T G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:12,11:0.478261:51,0,50 chr3 9028063 . A G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:54:32,22:0.407407:43,0,55 chr3 9049467 . C G 33.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:159:102,57:0.358491:33,0,47 chr3 9058305 . A G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:66:42,24:0.363636:42,0,53 chr3 9365152 . T C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:71:0,71:1:56,36,0 chr3 9365338 . T C 43.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:13:0,13:1:43,33,0 chr3 9380526 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:22:0,22:1:53,41,0 chr3 9384227 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:44:0,44:1:57,44,0 chr3 9453701 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:31:0,31:1:49,37,0 chr3 9726652 . C G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:68:0,68:1:60,47,0 chr3 9727324 . A T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:48:0,48:1:53,40,0 chr3 9741463 . A G 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:24:15,9:0.375:44,0,62 chr3 9745843 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:110:55,55:0.5:52,0,51 chr3 9761442 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:11,13:0.541667:50,0,58 chr3 9780591 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:47:22,25:0.531915:51,0,54 chr3 9782967 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:24,21:0.466667:50,0,51 chr3 9800305 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:51:24,27:0.529412:44,0,47 chr3 9809959 . G GGGGCGCGGGATCAGGGGCCCTGGGAGGGC 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:63:35,14:0.222222:49,0,53 chr3 9810375 . C CGAT 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:28:16,12:0.428571:43,0,55 chr3 9817776 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:69:33,36:0.521739:51,0,50 chr3 9818939 . T G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:49:29,20:0.408163:52,0,57 chr3 9825941 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:45,30:0.4:46,0,53 chr3 9829346 . T G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:77:50,27:0.350649:45,0,56 chr3 9854667 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:84:45,38:0.452381:47,0,52 chr3 9877177 . C A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:104:59,45:0.432692:44,0,51 chr3 9878454 . G C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:84:57,27:0.321429:44,0,54 chr3 9892921 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:138:64,74:0.536232:49,0,57 chr3 9928248 . TGG T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:56:26,30:0.535714:52,0,60 chr3 9928347 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:90:48,42:0.466667:57,0,57 chr3 9933563 . C G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:95:0,95:1:53,46,0 chr3 9934475 . A G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:95:0,95:1:58,46,0 chr3 9949704 . G C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:97:0,97:1:58,44,0 chr3 10148245 . T C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:21:0,21:1:54,42,0 chr3 10200559 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:10,9:0.473684:49,0,55 chr3 10217078 . G C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:27,17:0.386364:47,0,56 chr3 10222615 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:19,21:0.525:53,0,49 chr3 10222796 . C G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:96:52,44:0.458333:46,0,50 chr3 10226333 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:16,27:0.613636:55,0,51 chr3 10234479 . T A 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:58:0,58:1:61,46,0 chr3 10239069 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:17:6,11:0.647059:47,0,52 chr3 10249155 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:23,16:0.410256:48,0,56 chr3 10260361 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:120:78,42:0.35:49,0,58 chr3 10260372 . A G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:109:70,39:0.357798:47,0,54 chr3 10260488 . G A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:87:0,87:1:61,53,0 chr3 10260685 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:13:0,13:1:49,24,0 chr3 10260711 . G C 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:6:0,6:1:41,14,0 chr3 10270089 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:15:7,8:0.533333:54,0,57 chr3 10301192 . C T 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:55:0,55:1:59,45,0 chr3 10328802 . G C 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:45:0,45:1:58,44,0 chr3 10338239 . C T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:123:58,65:0.528455:57,0,56 chr3 10340464 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:30:11,19:0.633333:55,0,57 chr3 10345375 . C A 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:36:14,22:0.611111:52,0,52 chr3 10358959 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:19:9,10:0.526316:46,0,63 chr3 10360172 . G T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:14,12:0.461538:50,0,58 chr3 10372031 . G A 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:81:45,36:0.444444:41,0,51 chr3 10402143 . G C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:111:61,50:0.45045:41,0,53 chr3 10923870 . C CT 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:70:0,70:1:56,51,0 chr3 10926053 . T C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:69:0,69:1:58,41,0 chr3 10935190 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:43:0,43:1:52,41,0 chr3 10992682 . T C 25.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:5:0,5:1:24,8,0 chr3 10992706 . A T 38.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:12:0,12:1:38,16,0 chr3 10992737 . A T 36 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:21:0,21:1:35,27,0 chr3 10992824 . A AGC 33.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:9:2,7:0.777778:33,31,0 chr3 10992826 . T C 28.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:7:0,7:1:28,32,0 chr3 10992829 . CG C 23.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:11:4,7:0.636364:23,25,0 chr3 10992832 . T C 17.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:9:0,7:0.777778:17,17,0 chr3 10992891 . AT A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:10:0,8:0.8:36,25,0 chr3 11015683 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:66:30,36:0.545455:56,0,49 chr3 11259021 . T C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:36:0,36:1:51,43,0 chr3 11260105 . A G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:83:49,34:0.409639:49,0,55 chr3 11272224 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:72:40,32:0.444444:49,0,57 chr3 11272355 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:89:0,89:1:59,45,0 chr3 11272457 . G A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:162:108,54:0.333333:45,0,54 chr3 11450198 . G GT 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:54:0,54:1:54,43,0 chr3 11554828 . T C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:78:0,78:1:57,42,0 chr3 11601991 . T C 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:73:0,73:1:58,47,0 chr3 11702650 . T A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:50:29,21:0.42:49,0,58 chr3 11703070 . G GA 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:16:7,9:0.5625:58,0,62 chr3 11839342 . C A 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:37:0,37:1:63,48,0 chr3 11844891 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:26:0,26:1:52,42,0 chr3 11844977 . G A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:57:33,24:0.421053:53,0,56 chr3 11846517 . C G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:59:0,59:1:55,45,0 chr3 11870908 . G A 28.9 PASS FIXITFELIX GT:GQ:DP:AD:VAF:PL 1/1:5:2:0,2:1:27,3,0 chr3 11870916 . C G 24.6 PASS FIXITFELIX GT:GQ:DP:AD:VAF:PL 0/1:3:2:0,2:1:21,0,0 chr3 11871323 . C T 21.7 PASS FIXITFELIX GT:GQ:DP:AD:VAF:PL 0/1:20:68:39,29:0.426471:21,0,23 chr3 11871392 . T C 39.3 PASS FIXITFELIX GT:GQ:DP:AD:VAF:PL 0/1:31:65:46,19:0.292308:39,0,31 chr3 11873778 . A ATT 4.8 PASS FIXITFELIX GT:GQ:DP:AD:VAF:PL 0/1:4:26:1,6:0.230769:2,0,12 chr3 11883139 . AG A 33.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:17:1,16:0.941176:33,28,0 chr3 11883662 . T G 40.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:7:0,7:1:40,21,0 chr3 11883909 . A G 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:27:12,15:0.555556:37,0,31 chr3 11884015 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:31:0,31:1:48,31,0 chr3 11884071 . T C 16.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:34:29,5:0.147059:16,0,54 chr3 11884136 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:23:0,23:1:56,46,0 chr3 11884993 . A G 3.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:21:18,3:0.142857:0,0,45 chr3 11885034 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:52,40,0 chr3 11886759 . A AT 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:17:0,16:0.941176:47,38,0 chr3 11901205 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:73:0,73:1:56,41,0 chr3 12187460 . CTCTTCCTCCTCT C 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:233:149,76:0.32618:37,0,46 chr3 12187515 . A G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:170:0,170:1:53,43,0 chr3 12190574 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:86:0,85:0.988372:57,38,0 chr3 12287679 . GC G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:23:1,22:0.956522:45,44,0 chr3 12287696 . G C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:20:12,8:0.4:47,0,58 chr3 12287953 . C T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:8:4,4:0.5:36,0,37 chr3 12575034 . G A 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:26:15,11:0.423077:42,0,57 chr3 12663395 . G T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:70:0,70:1:57,44,0 chr3 12803659 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:30,20:0.4:48,0,57 chr3 12803667 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:37:16,21:0.567568:50,0,64 chr3 12807323 . T C 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:63:40,23:0.365079:45,0,57 chr3 12833944 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:118:65,53:0.449153:41,0,48 chr3 12920574 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:39,29:0.426471:45,0,51 chr3 13022091 . A C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:68:37,31:0.455882:47,0,51 chr3 13317789 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:93:44,48:0.516129:50,0,58 chr3 13319214 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:87:41,46:0.528736:53,0,51 chr3 13319738 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:48:25,22:0.458333:52,0,58 chr3 13319787 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:88:47,41:0.465909:57,0,61 chr3 13319891 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:104:53,51:0.490385:53,0,53 chr3 13323376 . G T 31.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:97:66,31:0.319588:31,0,45 chr3 13327178 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:18:11,7:0.388889:46,0,55 chr3 13327392 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:61:32,29:0.47541:46,0,50 chr3 13332393 . G C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:57:23,34:0.596491:55,0,43 chr3 13337900 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:71:0,71:1:55,43,0 chr3 13340068 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:21:8,13:0.619048:57,0,55 chr3 13342040 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:66:0,66:1:54,43,0 chr3 13354079 . C A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:78:0,78:1:54,38,0 chr3 13358286 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:96:57,39:0.40625:56,0,56 chr3 13366056 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:86:0,86:1:51,37,0 chr3 13379650 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:94:0,94:1:60,47,0 chr3 13397330 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:46:0,46:1:56,43,0 chr3 13397505 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:42:24,18:0.428571:49,0,61 chr3 13569039 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:92:53,39:0.423913:52,0,55 chr3 13569077 . T G 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:48:32,16:0.333333:38,0,50 chr3 13571436 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:90:55,35:0.388889:49,0,61 chr3 13608165 . C T 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:66:34,32:0.484848:46,0,56 chr3 13614182 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:9,14:0.608696:52,0,49 chr3 13619761 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:56:41,15:0.267857:48,0,58 chr3 13619769 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:60:44,16:0.266667:51,0,54 chr3 13628981 . A G 59.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:121:58,62:0.512397:59,0,53 chr3 13629036 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:69:0,69:1:58,51,0 chr3 13629276 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:69:0,69:1:58,40,0 chr3 13629337 . T G 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:30:0,30:1:61,44,0 chr3 13629902 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:129:85,43:0.333333:53,0,50 chr3 13637544 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:60:29,31:0.516667:56,0,60 chr3 13637703 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:113:63,50:0.442478:51,0,52 chr3 13637835 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:93:43,49:0.526882:55,0,58 chr3 13874910 . G T 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:15,12:0.444444:44,0,63 chr3 14113201 . C T 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:34:18,16:0.470588:43,0,50 chr3 14130808 . C T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:53:25,28:0.528302:47,0,47 chr3 14132633 . TG T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:33,21:0.388889:47,0,60 chr3 14139133 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:14,17:0.548387:52,0,48 chr3 14145323 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:21:13,8:0.380952:58,0,65 chr3 14145330 . A T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:25:15,10:0.4:57,0,67 chr3 14145949 . G T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:121:1,120:0.991736:55,45,0 chr3 14146199 . T C 42.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:17:0,17:1:42,21,0 chr3 14147262 . G C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:52:29,23:0.442308:54,0,67 chr3 14148737 . T G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:144:0,144:1:57,49,0 chr3 14148768 . G C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:170:84,85:0.5:57,0,58 chr3 14156487 . A T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:81:0,81:1:53,37,0 chr3 14158387 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:97:51,46:0.474227:48,0,52 chr3 14165601 . G C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:104:54,50:0.480769:51,0,53 chr3 14167125 . G C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:18:9,9:0.5:53,0,58 chr3 14167130 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:9,9:0.5:49,0,59 chr3 14170550 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:81:45,36:0.444444:48,0,53 chr3 14178595 . C G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:28,22:0.44:49,0,54 chr3 14432717 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:50:23,27:0.54:47,0,51 chr3 14479052 . G C 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:27:0,27:1:48,35,0 chr3 14485030 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:25:0,25:1:54,44,0 chr3 14496564 . CA C 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:27:14,13:0.481481:42,0,61 chr3 14509936 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:92:0,92:1:50,35,0 chr3 14511486 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:50:0,50:1:58,44,0 chr3 14513708 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:72:43,29:0.402778:49,0,56 chr3 14514250 . C CAGTT 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:13:8,5:0.384615:44,0,60 chr3 14514303 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:51:33,18:0.352941:46,0,58 chr3 14514513 . C T 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:14:10,4:0.285714:35,0,56 chr3 14517750 . T C 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:18:0,18:1:45,30,0 chr3 14520210 . C G 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:112:66,46:0.410714:36,0,48 chr3 14520518 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:65:38,27:0.415385:43,0,55 chr3 14521730 . G A 64.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,74:1:64,48,0 chr3 14555907 . A C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:136:74,62:0.455882:50,0,53 chr3 14667411 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:105:0,105:1:59,48,0 chr3 14670966 . G A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:50:0,50:1:61,45,0 chr3 14682906 . G A 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:97:0,97:1:60,43,0 chr3 14704350 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:43:23,20:0.465116:47,0,53 chr3 14704621 . A G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:61:33,28:0.459016:45,0,51 chr3 14714065 . A G 4.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:64:56,8:0.125:3,0,31 chr3 14714110 . C G 4.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:69:59,10:0.144928:2,0,28 chr3 14727027 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:97:0,97:1:52,42,0 chr3 14897691 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:21,16:0.432432:50,0,51 chr3 14897972 . G T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:119:58,61:0.512605:50,0,54 chr3 14907761 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:27,21:0.4375:48,0,55 chr3 14923959 . C T 63.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:62:59:34,25:0.423729:63,0,67 chr3 14924000 . A G 61.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:124:68,56:0.451613:61,0,63 chr3 15039095 . T TGG 18.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:45:18,16:0.355556:18,0,49 chr3 15073763 . G T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:51:16,35:0.686275:54,0,39 chr3 15269818 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:52:0,52:1:51,43,0 chr3 15414210 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:17:0,17:1:55,31,0 chr3 15467705 . T C 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:76:0,76:1:58,54,0 chr3 15474188 . C T 71.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:56:0,56:1:71,51,0 chr3 15474974 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:44:0,44:1:53,42,0 chr3 15475403 . T C 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:99:0,99:1:61,50,0 chr3 15475518 . G A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:69:0,69:1:61,47,0 chr3 15477224 . G C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:17:0,17:1:43,24,0 chr3 15498469 . C CCACACA 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:43:17,16:0.372093:27,0,49 chr3 15571784 . A ACAC 27.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:55:28,26:0.472727:27,0,40 chr3 15686293 . T C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:37:21,16:0.432432:44,0,64 chr3 15696182 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:19:0,19:1:49,39,0 chr3 15711323 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:15:7,8:0.533333:49,0,64 chr3 15712134 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:85:54,31:0.364706:45,0,55 chr3 15714532 . G GA 19.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:14:3,6:0.428571:17,0,13 chr3 15714532 . G GAA 19.9 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:14:3,3:0.214286:17,1,26 chr3 15766218 . T A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:43:0,43:1:59,47,0 chr3 16195747 . C G 30 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:38:28,10:0.263158:29,0,50 chr3 16200722 . G A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:119:62,57:0.478992:45,0,48 chr3 16272365 . G C 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:6:2,4:0.666667:35,0,47 chr3 16286402 . C T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:102:58,44:0.431373:42,0,53 chr3 16301585 . T G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:27:0,27:1:57,52,0 chr3 16316960 . A G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:65:38,27:0.415385:52,0,55 chr3 16317077 . T C 64.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:94:0,94:1:64,56,0 chr3 16323412 . A C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:26:0,26:1:51,49,0 chr3 16323447 . C T 20 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:24:18,6:0.25:20,0,49 chr3 16358073 . TG T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:13,23:0.605263:45,0,51 chr3 16358083 . C T 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:26:12,14:0.538462:40,0,50 chr3 16409365 . T C 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:22:0,22:1:57,49,0 chr3 16433907 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:72:34,38:0.527778:54,0,46 chr3 16493722 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:60:0,60:1:58,49,0 chr3 16592157 . C T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:20:11,9:0.45:42,0,53 chr3 16595278 . T C 35 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:6:3,3:0.5:34,0,47 chr3 16596960 . A G 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:9:5,4:0.444444:34,0,49 chr3 16597034 . A G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:12:8,4:0.333333:40,0,53 chr3 16597456 . T G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:12:6,6:0.5:42,0,54 chr3 16605238 . C G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:77:0,77:1:54,41,0 chr3 16770319 . C T 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:121:72,48:0.396694:39,0,57 chr3 16771164 . T C 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:162:0,162:1:60,50,0 chr3 16771264 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:118:0,117:0.991525:59,44,0 chr3 17009958 . C A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:38:20,18:0.473684:43,0,59 chr3 17012007 . A G 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:27,26:0.490566:47,0,56 chr3 17372039 . A AAAACAAACAAACAAAC 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:18:11,7:0.388889:34,0,55 chr3 17428411 . G A 6.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:6:3,3:0.5:2,0,0 chr3 18013739 . A C 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:130:0,129:0.992308:56,51,0 chr3 18378367 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:27:14,13:0.481481:53,0,62 chr3 18386432 . G T 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:112:76,36:0.321429:39,0,55 chr3 18416886 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:18,22:0.55:47,0,51 chr3 18423742 . TA T 18.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:28:13,14:0.5:18,0,39 chr3 18423951 . A G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:53:0,53:1:57,46,0 chr3 18424003 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:122:74,48:0.393443:50,0,63 chr3 18424323 . A AC 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:48:0,47:0.979167:46,34,0 chr3 18424330 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:46:0,46:1:57,44,0 chr3 18424567 . A G 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:53:33,20:0.377358:43,0,58 chr3 18424884 . G T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:147:88,59:0.401361:44,0,52 chr3 18444681 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:59:1,57:0.966102:51,44,0 chr3 19281374 . T A 25.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:5:3,2:0.4:25,0,47 chr3 19395095 . T C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:43:0,43:1:53,49,0 chr3 19456990 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:19:4,14:0.736842:44,0,36 chr3 19513356 . G A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:14:7,7:0.5:42,0,47 chr3 19899385 . A G 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:11,12:0.521739:50,0,52 chr3 19905613 . A C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:13,17:0.566667:51,0,53 chr3 19918264 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:27,14:0.341463:46,0,66 chr3 19919838 . C T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:25:16,9:0.36:42,0,56 chr3 19933208 . T C 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:39:20,19:0.487179:44,0,57 chr3 19933647 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:37,24:0.393443:43,0,50 chr3 19936337 . G GAA 14.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:13:5,6:0.461538:13,12,0 chr3 19950940 . G T 32.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:62:44,18:0.290323:32,0,49 chr3 19975997 . G C 21.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:4:2,2:0.5:21,0,39 chr3 19975998 . G C 19.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:4:2,2:0.5:18,0,39 chr3 20071613 . G A 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:41:26,15:0.365854:42,0,59 chr3 20072338 . G A 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:94:63,31:0.329787:30,0,54 chr3 20072497 . C A 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:24:16,8:0.333333:39,0,59 chr3 20140184 . T C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:14,11:0.44:45,0,53 chr3 20170697 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:59:33,26:0.440678:47,0,51 chr3 20175027 . T A 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:38:24,14:0.368421:33,0,46 chr3 20178393 . C T 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:14:7,7:0.5:48,0,51 chr3 21421262 . A G 63.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:83:0,83:1:63,51,0 chr3 21421295 . G A 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:88:0,88:1:60,49,0 chr3 21421388 . A G 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:43:23,20:0.465116:45,0,54 chr3 21441788 . T A 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:31:20,11:0.354839:40,0,54 chr3 21443270 . A C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:43:0,43:1:53,43,0 chr3 21849624 . T A 20.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:9:2,6:0.666667:20,8,0 chr3 21850759 . A G 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:87:0,87:1:60,48,0 chr3 22168782 . T C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:12,9:0.428571:45,0,63 chr3 22168971 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:32,19:0.372549:50,0,52 chr3 22372402 . C A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,33:1:56,41,0 chr3 23534128 . CT C 21.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:98:9,45:0.459184:19,2,0 chr3 23921570 . GTT G 3.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:56:12,8:0.142857:0,0,39 chr3 23921692 . G A 18.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:24:20,4:0.166667:18,0,46 chr3 24117156 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:61:35,26:0.42623:47,0,55 chr3 24228772 . G C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:24:13,11:0.458333:50,0,56 chr3 24687875 . T G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:60:32,28:0.466667:40,0,52 chr3 24762259 . G T 32.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:6:0,6:1:32,12,0 chr3 25461360 . G A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:56:32,24:0.428571:45,0,52 chr3 25464336 . C T 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:45:31,14:0.311111:42,0,50 chr3 25465539 . A G 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:73:0,73:1:61,47,0 chr3 25466059 . A C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:19,21:0.525:46,0,60 chr3 25466573 . G C 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:28:22,6:0.214286:24,0,49 chr3 25598482 . A AT 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:18:0,18:1:52,32,0 chr3 25620066 . T TA 42.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:7:0,7:1:42,17,0 chr3 25624665 . C T 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:31:21,10:0.322581:37,0,57 chr3 25630287 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:50:1,49:0.98:55,34,0 chr3 25632600 . C A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:22:0,22:1:55,34,0 chr3 25638247 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:17:0,17:1:52,43,0 chr3 25733865 . A C 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:96:65,31:0.322917:28,0,42 chr3 25736187 . A C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:19:9,10:0.526316:52,0,64 chr3 25794532 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:13:7,6:0.461538:40,0,49 chr3 27201521 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:35,21:0.368421:48,0,56 chr3 27256325 . G C 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:61:43,18:0.295082:35,0,52 chr3 27290686 . T C 21.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:29:23,6:0.206897:21,0,47 chr3 27301885 . G A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:12:6,6:0.5:47,0,62 chr3 27312225 . C A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:16:8,8:0.5:50,0,58 chr3 27322146 . T TA 17.1 PASS . GT:GQ:DP:AD:VAF:PL 0/0:6:10:5,2:0.2:16,5,36 chr3 27322146 . T TAA 17.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:10:5,3:0.3:16,0,37 chr3 27383227 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:54:0,54:1:52,38,0 chr3 27398357 . G A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:35:18,17:0.485714:42,0,52 chr3 27421738 . C T 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:83:43,40:0.481928:42,0,50 chr3 27717831 . TA T 30.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:18:2,10:0.555556:30,21,0 chr3 28478926 . T A 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:21:14,7:0.333333:32,0,43 chr3 28492167 . G A 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:32:23,9:0.28125:35,0,53 chr3 29434937 . G A 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:40:0,40:1:63,49,0 chr3 29488416 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:40:27,13:0.325:47,0,58 chr3 29488422 . TTC T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:45:28,17:0.377778:48,0,59 chr3 29587148 . C T 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:65:44,21:0.323077:39,0,55 chr3 29587250 . G T 7.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:26:5,20:0.769231:4,0,0 chr3 29762996 . A T 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:28:18,10:0.357143:40,0,51 chr3 29763018 . T C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:15:0,15:1:57,48,0 chr3 29991039 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:18,16:0.470588:48,0,51 chr3 30644922 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:31:16,15:0.483871:51,0,60 chr3 30671634 . T A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:12,23:0.638889:49,0,53 chr3 30728456 . C T 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:28:12,16:0.571429:57,0,61 chr3 30778273 . G T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:40:23,17:0.425:54,0,61 chr3 30786412 . A G 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:18:13,5:0.277778:38,0,58 chr3 30800852 . G C 7.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:91:52,39:0.428571:6,0,20 chr3 30800853 . A AC 6.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:93:54,39:0.419355:5,0,28 chr3 30800854 . A ACAC 10.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:97:40,40:0.412371:9,0,30 chr3 30800858 . G A 12.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:100:58,37:0.37:12,0,38 chr3 31670901 . C T 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:148:87,61:0.412162:46,0,52 chr3 31747886 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:39:19,20:0.512821:54,0,57 chr3 31797750 . T C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:41:0,41:1:51,40,0 chr3 32146756 . GA G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:24,19:0.44186:50,0,52 chr3 32292179 . T A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:58:35,23:0.396552:41,0,54 chr3 32717269 . TTG T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:16:8,8:0.5:49,0,55 chr3 32720257 . CT C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:24:14,10:0.416667:52,0,69 chr3 32816621 . C G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:19,24:0.55814:50,0,55 chr3 32886017 . G T 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:88:0,88:1:60,47,0 chr3 32891852 . G GTC 32.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:24:4,18:0.75:31,13,0 chr3 32974669 . C G 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:54:34,20:0.37037:40,0,42 chr3 32975732 . A G 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:24:18,6:0.25:37,0,61 chr3 33014229 . A G 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:150:77,73:0.486667:44,0,56 chr3 33053527 . G A 23.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:77:60,17:0.220779:23,0,53 chr3 33065568 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:60:29,31:0.516667:54,0,52 chr3 33093659 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:109:53,56:0.513761:47,0,49 chr3 33097052 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:131:0,131:1:57,55,0 chr3 33097057 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:130:68,61:0.469231:53,0,59 chr3 33120430 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:96:49,47:0.489583:51,0,56 chr3 33132664 . T G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:111:64,47:0.423423:48,0,54 chr3 33132676 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:91:56,34:0.373626:54,0,59 chr3 33134301 . C A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:49:0,49:1:56,47,0 chr3 33153498 . C A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:135:81,53:0.392593:46,0,49 chr3 33174865 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:43:20,23:0.534884:53,0,59 chr3 33214100 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:25:0,25:1:55,46,0 chr3 33392636 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:28:18,10:0.357143:41,0,52 chr3 33393339 . G A 33.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:57:38,19:0.333333:33,0,54 chr3 33402794 . T G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:24:8,16:0.666667:46,0,55 chr3 33412850 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:17,13:0.433333:47,0,53 chr3 33416774 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:15,11:0.423077:45,0,55 chr3 33838278 . G A 24.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:84:60,24:0.285714:24,0,47 chr3 35683758 . C T 38.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:108:69,39:0.361111:38,0,50 chr3 35737281 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:131:83,48:0.366412:46,0,52 chr3 35738258 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:81:41,40:0.493827:55,0,54 chr3 35738360 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:19:9,10:0.526316:50,0,61 chr3 35743804 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:9:3,6:0.666667:46,0,39 chr3 36443332 . G GT 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:21,32:0.603774:53,0,47 chr3 36715376 . C A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:115:69,46:0.4:44,0,49 chr3 36738216 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:106:48,58:0.54717:46,0,51 chr3 36855162 . G C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:45:0,45:1:55,38,0 chr3 36856321 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:130:0,130:1:54,43,0 chr3 36857500 . T C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:88:43,45:0.511364:50,0,53 chr3 36874323 . T G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:26:0,26:1:56,41,0 chr3 36892852 . CAT C 27.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:7:0,7:1:27,12,0 chr3 36895615 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:37:0,37:1:52,40,0 chr3 36899250 . G T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:70:0,70:1:55,43,0 chr3 36908471 . G T 62.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:53:0,53:1:62,51,0 chr3 36945441 . C T 30.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:20:14,6:0.3:30,0,56 chr3 36945501 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:54:0,54:1:56,58,0 chr3 36945592 . A C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:21:0,21:1:47,35,0 chr3 36993455 . G A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:119:65,54:0.453782:53,0,54 chr3 36997280 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:49:29,20:0.408163:45,0,53 chr3 37003742 . A C 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:87:56,31:0.356322:37,0,46 chr3 37007142 . A G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:21,17:0.447368:44,0,60 chr3 37012077 . A G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:84:52,32:0.380952:41,0,47 chr3 37020549 . T C 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:132:79,53:0.401515:51,0,58 chr3 37042249 . A G 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:40,24:0.375:42,0,53 chr3 37054533 . T C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:58:31,27:0.465517:42,0,51 chr3 37065979 . G A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:34:14,20:0.588235:51,0,54 chr3 37103044 . C A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:29:13,16:0.551724:44,0,52 chr3 37109497 . C G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:51:29,22:0.431373:47,0,48 chr3 37121548 . G A 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:62:0,62:1:62,44,0 chr3 37243661 . C T 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:33:20,13:0.393939:38,0,55 chr3 37324968 . C A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:58:28,30:0.517241:50,0,53 chr3 37327264 . T A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:25,27:0.519231:50,0,55 chr3 37335009 . C CT 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:16:7,8:0.5:46,0,40 chr3 37471155 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:30:0,30:1:55,45,0 chr3 37471156 . G C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:30:0,30:1:52,40,0 chr3 37481588 . G A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:105:68,37:0.352381:31,0,49 chr3 37494493 . C G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:89:50,39:0.438202:49,0,60 chr3 37533460 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:73:42,31:0.424658:45,0,43 chr3 38039461 . T G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:72:1,71:0.986111:51,35,0 chr3 38039540 . A T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:54:0,54:1:54,42,0 chr3 38084214 . G A 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:71:0,71:1:58,40,0 chr3 38110240 . T C 31.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:116:65,51:0.439655:31,0,59 chr3 38118055 . G A 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:25:14,11:0.44:42,0,56 chr3 38308988 . T C 24 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:93:78,15:0.16129:24,0,50 chr3 38309028 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:150:123,27:0.18:46,0,60 chr3 38309052 . A G 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:142:114,28:0.197183:38,0,59 chr3 38309139 . C A 17 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:55:42,13:0.236364:16,0,44 chr3 38313685 . T TGTGTGTGTGTGTGCGCGCGC 47 PASS . GT:GQ:DP:AD:VAF:PL 1/0:6:44:1,7:0.159091:45,32,26 chr3 38313685 . T TGTGTGTGTGTGTGTGCGCGCGC 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:44:1,15:0.340909:45,32,5 chr3 38348529 . C A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:65:0,65:1:54,46,0 chr3 38360348 . T C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:87:0,86:0.988506:57,50,0 chr3 38360427 . A G 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:76:0,76:1:53,44,0 chr3 38362981 . C A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:74:44,30:0.405405:44,0,55 chr3 38365157 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:38:0,38:1:51,44,0 chr3 38365282 . G T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:88:0,88:1:56,47,0 chr3 38365302 . T G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:78:0,78:1:56,43,0 chr3 38366870 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:42:0,42:1:55,41,0 chr3 38372389 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:48:0,48:1:57,49,0 chr3 38400999 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:57:0,57:1:53,36,0 chr3 38452729 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:46:0,46:1:53,40,0 chr3 38452737 . G C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:56:0,56:1:57,48,0 chr3 38454574 . C T 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:18:0,18:1:57,41,0 chr3 38454702 . G C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:20:0,19:0.95:54,39,0 chr3 38477933 . A G 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:67:0,67:1:59,42,0 chr3 38479665 . T C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:31:0,31:1:55,50,0 chr3 38483251 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:102:0,102:1:54,46,0 chr3 38580976 . T C 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:166:0,165:0.993976:59,42,0 chr3 38585662 . G GGTGTGTGTGTGTGTGTGTGTGTGTGTGT 31.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:134:9,39:0.291045:31,24,0 chr3 38614542 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:50:0,50:1:56,42,0 chr3 38633221 . T C 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:105:70,35:0.333333:32,0,42 chr3 38645735 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:112:60,51:0.455357:52,0,47 chr3 38698083 . T C 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:81:0,81:1:63,51,0 chr3 38698354 . A G 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:65:0,65:1:55,40,0 chr3 38702138 . G A 40.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:77:45,32:0.415584:40,0,52 chr3 38712486 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:14:7,7:0.5:46,0,56 chr3 38722372 . G C 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:104:61,43:0.413462:45,0,53 chr3 38723507 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:123:75,48:0.390244:48,0,53 chr3 38725184 . A G 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:67:0,67:1:53,36,0 chr3 38726756 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:100:58,42:0.42:55,0,55 chr3 38726809 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:80:42,37:0.4625:49,0,60 chr3 38739480 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:40:17,23:0.575:55,0,56 chr3 38742538 . T C 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:46:0,46:1:61,53,0 chr3 38752498 . G A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:134:79,55:0.410448:46,0,52 chr3 38756680 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:45,44:0.494382:51,0,49 chr3 38760760 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:67:41,26:0.38806:47,0,58 chr3 38816246 . C T 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:42:28,14:0.333333:39,0,56 chr3 38885421 . C G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:19:0,19:1:50,39,0 chr3 38896808 . C CT 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:33:9,19:0.575758:42,36,0 chr3 38920046 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:32:0,32:1:51,53,0 chr3 38925551 . C T 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:13,9:0.409091:43,0,56 chr3 39032523 . C CA 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:19,24:0.545455:50,0,64 chr3 39051835 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:56:31,25:0.446429:49,0,53 chr3 39066502 . T G 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:23:8,15:0.652174:52,0,53 chr3 39068902 . T C 34.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:15:7,8:0.533333:34,0,53 chr3 39069649 . C A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:72:46,26:0.361111:39,0,55 chr3 39077254 . A G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:38:22,16:0.421053:40,0,59 chr3 39088251 . A C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:16,19:0.542857:49,0,53 chr3 39091594 . T G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:12:6,6:0.5:51,0,49 chr3 39110854 . G A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:31:0,31:1:48,37,0 chr3 39119965 . G A 28.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:3:0,3:1:27,4,0 chr3 39119973 . G A 28.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:4:0,4:1:27,2,0 chr3 39125018 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:11,17:0.607143:53,0,56 chr3 39126414 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:59:26,33:0.559322:49,0,53 chr3 39138608 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:62:38,24:0.387097:45,0,55 chr3 39143468 . C T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:99:56,43:0.434343:47,0,56 chr3 39143757 . A G 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:74:50,24:0.324324:39,0,57 chr3 39144477 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:34:20,14:0.411765:47,0,49 chr3 39184636 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:105:62,42:0.4:49,0,53 chr3 39186173 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:62:29,33:0.532258:50,0,51 chr3 39186552 . T G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:86:45,41:0.476744:54,0,57 chr3 39188409 . T C 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:67:0,67:1:60,38,0 chr3 39265671 . G A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:66:42,24:0.363636:40,0,44 chr3 39265765 . C T 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:65:48,16:0.246154:29,0,53 chr3 39281672 . A C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:109:74,35:0.321101:41,0,48 chr3 39332411 . C G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:96:57,39:0.40625:47,0,62 chr3 39391656 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:111:0,111:1:55,45,0 chr3 39394374 . G C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:25,25:0.5:50,0,52 chr3 39406713 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:116:62,54:0.465517:51,0,56 chr3 39407646 . T C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:16:0,16:1:42,26,0 chr3 39408574 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:32:14,18:0.5625:54,0,55 chr3 39408785 . C CAT 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:18:10,8:0.444444:44,0,67 chr3 39411669 . G A 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:90:58,32:0.355556:34,0,53 chr3 39513455 . C T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:76:0,76:1:60,49,0 chr3 40166959 . C G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:39:21,17:0.435897:47,0,50 chr3 40189892 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:79:44,35:0.443038:53,0,56 chr3 40190392 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:77:42,35:0.454545:54,0,59 chr3 40233970 . C T 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:47,29:0.381579:43,0,54 chr3 40244526 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:87:0,87:1:54,39,0 chr3 40250345 . C T 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:66:38,28:0.424242:43,0,61 chr3 40309993 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:93:50,41:0.44086:51,0,54 chr3 40310864 . AT A 31.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:17:0,15:0.882353:30,14,0 chr3 40311934 . CAG C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:22:0,22:1:48,30,0 chr3 40418041 . A G 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:45:30,15:0.333333:36,0,49 chr3 40427405 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:105:50,55:0.52381:49,0,52 chr3 40457354 . C T 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:55:21,34:0.618182:54,0,56 chr3 40457442 . A G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:31:0,31:1:52,41,0 chr3 40462015 . C T 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:34:19,15:0.441176:40,0,52 chr3 40462029 . A ACTGCTG 39.3 PASS . GT:GQ:DP:AD:VAF:PL 1/0:19:75:0,42:0.56:39,22,37 chr3 40462029 . A ACTGCTGCTG 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:75:0,23:0.306667:39,22,41 chr3 40477938 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:31:0,31:1:50,39,0 chr3 40478041 . C A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:53:28,25:0.471698:45,0,49 chr3 40511425 . T C 35 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:3:0,3:1:34,8,0 chr3 40515818 . GT G 26.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:56:1,55:0.982143:26,19,0 chr3 40515820 . GA G 31.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:61:0,60:0.983607:31,18,0 chr3 41195090 . G C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:55:32,23:0.418182:48,0,58 chr3 41198686 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:62:35,26:0.419355:49,0,57 chr3 41220953 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:16,14:0.466667:47,0,49 chr3 41391741 . A T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:42:27,15:0.357143:43,0,56 chr3 41717699 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:15,12:0.444444:45,0,53 chr3 41754349 . A C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:32:17,15:0.46875:41,0,55 chr3 41800224 . A C 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:70:49,21:0.3:29,0,39 chr3 41819521 . GA G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:37:18,18:0.486486:46,0,52 chr3 41835981 . C CAAA 24.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:24:6,10:0.416667:24,0,45 chr3 41836011 . G A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:21:8,13:0.619048:42,0,48 chr3 41883931 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:26:0,26:1:57,40,0 chr3 41897008 . G C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:35:0,35:1:48,31,0 chr3 41898501 . T A 21.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:6:2,4:0.666667:21,13,0 chr3 41900707 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:14,9:0.391304:48,0,64 chr3 41911289 . C T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:17:0,17:1:50,29,0 chr3 41915974 . T G 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:18:14,4:0.222222:36,0,56 chr3 41919676 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:16:9,7:0.4375:47,0,53 chr3 41938209 . C A 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:15:10,5:0.333333:40,0,57 chr3 41954644 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:90:50,40:0.444444:49,0,54 chr3 41954783 . A G 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:39:0,39:1:57,51,0 chr3 42091491 . G A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:109:62,46:0.422018:51,0,61 chr3 42176807 . C G 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:45:28,17:0.377778:39,0,54 chr3 42184659 . T C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:50:31,19:0.38:49,0,55 chr3 42194923 . A G 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:116:70,46:0.396552:39,0,46 chr3 42202829 . G A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:111:54,57:0.513514:54,0,52 chr3 42209771 . C T 62.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:47:19,28:0.595745:62,0,65 chr3 42209837 . C T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:88:43,45:0.511364:57,0,58 chr3 42210085 . C CGGAGGA 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:103:25,57:0.553398:32,0,47 chr3 42258245 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:25,23:0.479167:46,0,52 chr3 42263639 . C G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:47:0,47:1:54,43,0 chr3 42557557 . T TTA 6.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:19:9,6:0.315789:5,20,0 chr3 42557742 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:17:6,11:0.647059:43,0,49 chr3 42568882 . A G 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:71:40,31:0.43662:37,0,55 chr3 42618997 . CT C 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:26:9,9:0.346154:2,0,29 chr3 42638005 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:65:37,28:0.430769:49,0,54 chr3 42638285 . T G 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:49:33,16:0.326531:31,0,48 chr3 42642641 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:15,16:0.516129:50,0,56 chr3 42643295 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:19,21:0.525:47,0,51 chr3 42653821 . G A 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:80:51,29:0.3625:30,0,55 chr3 42659138 . A G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:24,20:0.454545:50,0,57 chr3 42659225 . A G 34.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:45:32,13:0.288889:34,0,52 chr3 42686652 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:98:2,96:0.979592:48,34,0 chr3 42691976 . T C 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:107:61,46:0.429907:41,0,53 chr3 42693658 . T C 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:84:59,25:0.297619:36,0,49 chr3 42693782 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:101:56,45:0.445545:50,0,52 chr3 42696805 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:72:40,32:0.444444:56,0,61 chr3 42701146 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:34:21,13:0.382353:46,0,55 chr3 42732983 . G A 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:56:29,27:0.482143:42,0,51 chr3 42739784 . G T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:75:37,38:0.506667:56,0,62 chr3 42739824 . G A 59.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:54:28,26:0.481481:59,0,65 chr3 42745977 . A G 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:83:46,37:0.445783:52,0,53 chr3 42758273 . G A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:171:96,75:0.438596:42,0,54 chr3 42758366 . T A 65.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:57:96:0,96:1:65,58,0 chr3 42875555 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:58:0,58:1:54,42,0 chr3 42914781 . T C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:59:0,59:1:56,42,0 chr3 43033379 . A G 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:52:0,52:1:58,42,0 chr3 43053609 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:91:56,35:0.384615:48,0,50 chr3 43056218 . A G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:53:30,22:0.415094:51,0,51 chr3 43080067 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:88:34,53:0.602273:53,0,51 chr3 43081474 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:19:7,12:0.631579:55,0,58 chr3 43372826 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:55:0,55:1:50,37,0 chr3 43715085 . C CTG 17.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:38:0,36:0.947368:14,0,1 chr3 44242033 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:24:0,24:1:54,39,0 chr3 44242180 . T C 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:53:0,52:0.981132:58,45,0 chr3 44242316 . C A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:132:0,131:0.992424:55,46,0 chr3 44243092 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:27:14,13:0.481481:54,0,48 chr3 44243118 . G A 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:20:10,10:0.5:56,0,65 chr3 44336467 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:85:42,42:0.494118:58,0,60 chr3 44358176 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:33:0,33:1:52,44,0 chr3 44396378 . A C 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:32:0,32:1:55,41,0 chr3 44451296 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:18,19:0.513514:49,0,57 chr3 44499299 . TTC T 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:44:0,44:1:56,42,0 chr3 44570558 . C T 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:46:32,14:0.304348:37,0,56 chr3 44684515 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:63:36,27:0.428571:47,0,59 chr3 44721338 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:40:22,18:0.45:47,0,59 chr3 44721545 . A C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:63:0,63:1:53,37,0 chr3 44734470 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:19:0,19:1:54,35,0 chr3 44761616 . AAAGACAG A 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:53:0,52:0.981132:52,40,0 chr3 44775460 . CTT C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:44:2,35:0.795455:50,45,0 chr3 44784823 . G GT 24.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:12:0,9:0.75:24,14,0 chr3 44813071 . A G 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:28:0,28:1:52,41,0 chr3 44827534 . A T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:39:0,39:1:54,42,0 chr3 44843155 . C A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:51:0,51:1:48,42,0 chr3 44890778 . C T 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:20:12,8:0.4:41,0,58 chr3 44893527 . C T 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:30:19,11:0.366667:42,0,63 chr3 44901577 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:80:32,48:0.6:51,0,53 chr3 44901897 . G A 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:85:57,28:0.329412:36,0,50 chr3 44906987 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:76:43,33:0.434211:50,0,58 chr3 44907098 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:179:113,66:0.368715:52,0,53 chr3 44910915 . G C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:9,16:0.64:48,0,54 chr3 44911450 . A C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:38:18,20:0.526316:44,0,57 chr3 44919069 . T C 9.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:40:33,7:0.175:8,0,41 chr3 44922993 . C G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:53:35,18:0.339623:42,0,57 chr3 45086023 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:89:0,89:1:51,43,0 chr3 45091145 . T C 15.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:11:8,3:0.272727:15,0,48 chr3 45095595 . T G 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:28:18,10:0.357143:44,0,54 chr3 45110851 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:45:16,29:0.644444:53,0,45 chr3 45112216 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:121:55,65:0.53719:54,0,49 chr3 45146179 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:81:0,81:1:53,37,0 chr3 45146293 . C G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:44,44:0.494382:48,0,52 chr3 45225818 . C T 33 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:9:0,9:1:32,19,0 chr3 45225829 . C T 31.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:4:0,4:1:31,14,0 chr3 45388659 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:28:1,27:0.964286:45,37,0 chr3 45485726 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:44:0,44:1:52,35,0 chr3 45491732 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:160:1,157:0.98125:55,44,0 chr3 45500591 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:50:0,50:1:57,46,0 chr3 45518027 . T C 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:106:0,106:1:60,46,0 chr3 45524062 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:167:0,167:1:54,41,0 chr3 45595761 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:76:43,33:0.434211:52,0,55 chr3 45595947 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:80:46,34:0.425:50,0,54 chr3 45612866 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:57:26,31:0.54386:54,0,50 chr3 45636143 . C CT 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:61:0,61:1:46,51,0 chr3 45636146 . CA C 40.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:65:0,64:0.984615:40,26,0 chr3 45636290 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:32:22,10:0.3125:44,0,62 chr3 45706937 . G A 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:27:0,27:1:55,47,0 chr3 45706943 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:26:0,26:1:51,51,0 chr3 45719623 . G C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:20:0,20:1:51,39,0 chr3 45731280 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:21:0,21:1:47,38,0 chr3 45735408 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:29:0,29:1:49,41,0 chr3 45737644 . A T 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:23:0,23:1:57,41,0 chr3 45762899 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:53:21,32:0.603774:56,0,48 chr3 45772602 . G A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:111:65,46:0.414414:42,0,58 chr3 45775926 . A G 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:96:0,96:1:61,54,0 chr3 45780132 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:112:61,51:0.455357:52,0,57 chr3 45897524 . G A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:34:15,19:0.558824:46,0,47 chr3 45936407 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:48:0,48:1:54,55,0 chr3 45947552 . T G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:114:62,52:0.45614:52,0,50 chr3 45955269 . G A 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:74:0,74:1:62,52,0 chr3 45959571 . G A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:15,10:0.4:43,0,56 chr3 45967298 . G A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:90:39,51:0.566667:54,0,45 chr3 45967999 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:33,42:0.56:51,0,50 chr3 45968372 . C G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:76:39,36:0.473684:49,0,60 chr3 45968585 . C T 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:180:0,179:0.994444:61,43,0 chr3 45975359 . A T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:71:37,34:0.478873:48,0,56 chr3 45979726 . G T 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:66:0,66:1:62,47,0 chr3 46358307 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:71:40,31:0.43662:49,0,51 chr3 46358571 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:32:21,11:0.34375:39,0,58 chr3 46373452 . TACAGTCAGTATCAATTCTGGAAGAATTTCCAG T 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:52:30,22:0.423077:48,0,65 chr3 46408373 . G T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:89:46,43:0.483146:46,0,52 chr3 46408487 . A C 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:56:33,23:0.410714:42,0,54 chr3 46408579 . T A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:43:22,20:0.465116:53,0,59 chr3 46408581 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:43:21,22:0.511628:52,0,52 chr3 46438177 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:18:9,9:0.5:47,0,51 chr3 46439467 . C G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:94:33,61:0.648936:52,0,51 chr3 46441489 . A T 29.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:67:47,20:0.298507:29,0,35 chr3 46443407 . T G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:46:0,45:0.978261:53,47,0 chr3 46459794 . C CCTT 43.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:122:6,116:0.95082:43,41,0 chr3 46498033 . G A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:22,15:0.405405:48,0,59 chr3 46532766 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:13,8:0.380952:46,0,62 chr3 46532928 . A G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:21:12,9:0.428571:42,0,61 chr3 46539101 . G T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:49:31,18:0.367347:42,0,57 chr3 46579124 . T C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:70:42,28:0.4:46,0,55 chr3 46612642 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:55:0,55:1:51,37,0 chr3 46617247 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:97:0,97:1:56,39,0 chr3 46671612 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:48:28,20:0.416667:44,0,55 chr3 46673307 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:16,18:0.529412:52,0,56 chr3 46673331 . C G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:51:26,25:0.490196:54,0,64 chr3 46675575 . C G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:46:24,22:0.478261:54,0,56 chr3 46676002 . C G 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:54:27,27:0.5:39,0,44 chr3 46676441 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:23:0,23:1:59,42,0 chr3 46676808 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:0,31:1:53,44,0 chr3 46680029 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:77:0,77:1:54,39,0 chr3 46681202 . G T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:66:0,65:0.984848:53,39,0 chr3 46682061 . G A 63.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:113:0,113:1:63,48,0 chr3 46709583 . TAAG T 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:101:4,89:0.881188:60,51,0 chr3 46712486 . T C 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:60:0,60:1:59,41,0 chr3 46866412 . A G 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:61:0,61:1:62,48,0 chr3 46902784 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:46:0,46:1:57,39,0 chr3 46922012 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:26:0,26:1:51,47,0 chr3 46923707 . C G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:53:0,53:1:60,42,0 chr3 46925550 . G A 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:67:0,67:1:55,42,0 chr3 46976425 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:139:1,138:0.992806:55,42,0 chr3 46976724 . T C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:181:0,181:1:54,41,0 chr3 46990852 . C G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:50:0,50:1:56,41,0 chr3 46992447 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:75:0,75:1:59,47,0 chr3 47002048 . C T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:74:0,74:1:58,42,0 chr3 47002632 . A T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:75:0,75:1:55,44,0 chr3 47004249 . C G 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:108:0,108:1:59,43,0 chr3 47005352 . G C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:51:0,50:0.980392:56,39,0 chr3 47005868 . A C 62.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:144:0,144:1:62,52,0 chr3 47037622 . G A 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:65:0,65:1:59,56,0 chr3 47062371 . GTT G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:91:1,72:0.791209:48,26,0 chr3 47083895 . G A 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:86:0,86:1:63,52,0 chr3 47084426 . CT C 21 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:27:1,13:0.481481:20,14,0 chr3 47101417 . TCC T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:43:0,43:1:53,35,0 chr3 47101597 . AGT A 13.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:78:6,65:0.833333:13,0,12 chr3 47121171 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:37:0,37:1:57,43,0 chr3 47235478 . C T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:28:0,28:1:50,43,0 chr3 47236395 . G A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:50,39,0 chr3 47240813 . G A 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:52:0,52:1:61,45,0 chr3 47264343 . G A 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:38:28,10:0.263158:32,0,41 chr3 47277257 . T G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:39:0,39:1:52,32,0 chr3 47281006 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:75:0,75:1:56,41,0 chr3 47407568 . T C 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:100:0,100:1:61,45,0 chr3 47410597 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:184:0,184:1:53,44,0 chr3 47411296 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:95:0,95:1:55,37,0 chr3 47412909 . G A 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:128:1,126:0.984375:59,47,0 chr3 47418189 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:69:0,69:1:50,31,0 chr3 47420710 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:81:0,81:1:59,48,0 chr3 47498261 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:38:0,38:1:58,45,0 chr3 47498479 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:54:0,54:1:55,41,0 chr3 47501404 . G A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:80:0,80:1:60,44,0 chr3 47501899 . G A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:23:0,23:1:58,48,0 chr3 47562809 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:17:0,17:1:47,37,0 chr3 47572923 . G A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:23:7,16:0.695652:53,0,53 chr3 47577463 . C A 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:79:43,36:0.455696:46,0,54 chr3 47680544 . C CT 13 PASS . GT:GQ:DP:AD:VAF:PL 1/0:3:26:3,7:0.269231:10,4,9 chr3 47680544 . C CTT 13 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:26:3,5:0.192308:10,4,24 chr3 47693210 . A G 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:41:23,18:0.439024:43,0,59 chr3 47816085 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:85:43,41:0.482353:56,0,53 chr3 47911915 . A C 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:81:53,28:0.345679:32,0,47 chr3 47912243 . C A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:90:58,32:0.355556:48,0,54 chr3 47914934 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:100:51,49:0.49:53,0,58 chr3 47916547 . G T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:67:38,29:0.432836:50,0,53 chr3 48177830 . AAC A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:25:0,24:0.96:53,40,0 chr3 48373517 . C G 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:31:0,31:1:48,31,0 chr3 48378407 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:82:0,82:1:58,45,0 chr3 48409299 . T TC 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:37:0,37:1:53,50,0 chr3 48409892 . A AG 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:71:1,70:0.985915:55,48,0 chr3 48413059 . T C 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:114:0,114:1:63,52,0 chr3 48419904 . G C 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:41:0,41:1:58,45,0 chr3 48422209 . A T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:29:0,29:1:55,37,0 chr3 48422302 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:26:0,26:1:55,45,0 chr3 48429347 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,18:1:50,33,0 chr3 48432839 . G A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:88:1,87:0.988636:56,41,0 chr3 48463903 . G A 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:56:0,56:1:54,41,0 chr3 48464565 . A C 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:46:0,46:1:57,39,0 chr3 48467186 . T C 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:102:0,102:1:58,44,0 chr3 48549975 . A C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:52:29,23:0.442308:52,0,60 chr3 48565090 . G GGGC 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:70:1,68:0.971429:55,43,0 chr3 48573192 . G T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:38,21:0.355932:47,0,55 chr3 48587178 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:104:0,104:1:56,42,0 chr3 48587833 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:98:1,97:0.989796:60,47,0 chr3 48590581 . G A 66.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:164:0,163:0.993902:66,51,0 chr3 48621034 . C A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:53:21,32:0.603774:49,0,46 chr3 48664903 . C A 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:158:0,158:1:60,47,0 chr3 48682205 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:40:0,40:1:56,45,0 chr3 48689679 . G A 64.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:55:0,55:1:64,49,0 chr3 48859645 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:56:0,56:1:59,45,0 chr3 48949113 . CATTTATTT C 30.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:10:0,10:1:29,6,0 chr3 48967290 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:26:0,26:1:54,43,0 chr3 49007334 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:31:0,31:1:55,40,0 chr3 49015786 . A G 63.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:102:0,101:0.990196:63,51,0 chr3 49017259 . T C 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:105:0,105:1:61,52,0 chr3 49098528 . C G 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:93:0,93:1:62,48,0 chr3 49100471 . G T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:98:0,98:1:60,41,0 chr3 49101377 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:72:46,26:0.361111:43,0,57 chr3 49111457 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:43:0,43:1:59,43,0 chr3 49112500 . C G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:74:38,36:0.486486:50,0,52 chr3 49125150 . C T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:71:39,32:0.450704:43,0,52 chr3 49128636 . C T 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:55:0,54:0.981818:59,42,0 chr3 49163194 . A G 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:141:76,65:0.460993:57,0,68 chr3 49163259 . T A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:131:73,58:0.442748:51,0,57 chr3 49236563 . C T 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:18,10:0.357143:46,0,58 chr3 49327836 . C T 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:14,14:0.5:54,0,53 chr3 49358240 . GGCCGCC G 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:66:36,24:0.363636:38,0,58 chr3 49411352 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:32:0,32:1:55,48,0 chr3 49411510 . C T 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:22:0,22:1:56,42,0 chr3 49426267 . C T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:74:40,34:0.459459:49,0,49 chr3 49470414 . G A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:37,27:0.421875:43,0,49 chr3 49487345 . G C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:100:56,44:0.44:48,0,47 chr3 49510575 . C G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:73:0,72:0.986301:59,46,0 chr3 49510861 . T C 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:52:0,52:1:60,37,0 chr3 49530748 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:27:9,18:0.666667:58,0,43 chr3 49652766 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:33:18,15:0.454545:52,0,57 chr3 49663865 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:49:27,22:0.44898:46,0,53 chr3 49667554 . T C 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:20:12,8:0.4:37,0,52 chr3 49669305 . C T 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:74:40,34:0.459459:41,0,48 chr3 49670215 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:58:0,57:0.982759:56,42,0 chr3 49671069 . G T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:105:58,47:0.447619:49,0,47 chr3 49671155 . TGC T 9.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:96:35,61:0.635417:8,0,12 chr3 49671157 . C T 14.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:36:10,24:0.666667:14,0,26 chr3 49671370 . TCAAA T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:87:48,39:0.448276:57,0,62 chr3 49682960 . C G 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:39:25,14:0.358974:41,0,57 chr3 49685328 . C A 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:171:105,66:0.385965:39,0,43 chr3 49685714 . T C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:105:60,45:0.428571:46,0,50 chr3 49686351 . C A 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:142:70,70:0.492958:40,0,35 chr3 49687375 . T C 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:64:34,30:0.46875:44,0,41 chr3 49698739 . C A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:27,17:0.386364:51,0,49 chr3 49701512 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:54:23,31:0.574074:55,0,45 chr3 49702074 . G C 27.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:47:35,12:0.255319:27,0,45 chr3 49714152 . C T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:62:36,25:0.403226:44,0,53 chr3 49716355 . A G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:37:17,20:0.540541:52,0,56 chr3 49721331 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:152:84,68:0.447368:51,0,49 chr3 49722606 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:86:0,86:1:54,40,0 chr3 49723044 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:123:60,61:0.495935:51,0,52 chr3 49791430 . G C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:110:71,39:0.354545:47,0,55 chr3 49791893 . G A 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:47:29,18:0.382979:38,0,52 chr3 49795596 . A G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:58:26,32:0.551724:55,0,59 chr3 49803093 . G GA 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:6:1,5:0.833333:36,0,21 chr3 49805448 . T TG 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:72:4,67:0.930556:52,47,0 chr3 49810190 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:101:48,53:0.524752:56,0,53 chr3 49810209 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:95:50,45:0.473684:53,0,51 chr3 49810981 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:95:53,42:0.442105:52,0,57 chr3 49829151 . T G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:87:49,38:0.436782:49,0,47 chr3 49840962 . A G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:55:28,27:0.490909:50,0,53 chr3 49847480 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:55:33,22:0.4:51,0,71 chr3 49860567 . A G 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:59:0,59:1:57,43,0 chr3 49860840 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:78:0,78:1:47,44,0 chr3 49860885 . C G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:56:24,32:0.571429:54,0,55 chr3 49862362 . G A 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:113:78,35:0.309735:35,0,51 chr3 49887507 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:67:0,67:1:54,45,0 chr3 49890070 . G T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:57:31,26:0.45614:49,0,51 chr3 49891592 . C A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:38:19,19:0.5:47,0,56 chr3 49898669 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:47:0,47:1:58,45,0 chr3 49899282 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:11,13:0.541667:51,0,54 chr3 49909379 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:71:40,31:0.43662:46,0,58 chr3 49911638 . A G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:97:46,51:0.525773:50,0,53 chr3 49968770 . CTTTTTTTTTT C 24.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:27:6,7:0.259259:24,0,38 chr3 50075152 . G A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:109:59,43:0.394495:55,0,61 chr3 50077082 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:16,26:0.619048:55,0,51 chr3 50093707 . T A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:22,20:0.47619:52,0,55 chr3 50107518 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:108:61,47:0.435185:48,0,49 chr3 50115923 . T C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:83:55,28:0.337349:44,0,54 chr3 50155327 . C T 28.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:4:0,4:1:27,4,0 chr3 50158985 . C A 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:19:0,19:1:56,36,0 chr3 50175079 . G T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:68:36,32:0.470588:51,0,48 chr3 50185493 . T A 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:130:72,58:0.446154:38,0,52 chr3 50186792 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:23:12,11:0.478261:48,0,49 chr3 50195782 . T G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:33,42:0.56:53,0,49 chr3 50195884 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:81:43,38:0.469136:47,0,55 chr3 50196693 . A G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:105:62,43:0.409524:53,0,60 chr3 50205368 . TC T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:54:28,26:0.481481:49,0,58 chr3 50218231 . C T 62.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:45:21,24:0.533333:62,0,61 chr3 50218234 . C T 60.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:47:23,24:0.510638:60,0,60 chr3 50292395 . A G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:57:39,18:0.315789:43,0,53 chr3 50295266 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:83:39,44:0.53012:51,0,51 chr3 50320438 . A C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:56:35,21:0.375:42,0,56 chr3 50559661 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:70:41,29:0.414286:49,0,52 chr3 50571692 . T C 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:71:0,71:1:62,47,0 chr3 50572193 . T G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:67:33,34:0.507463:51,0,49 chr3 50580071 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:57:25,32:0.561404:59,0,55 chr3 50608362 . C G 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:24,20:0.454545:49,0,64 chr3 50611939 . C G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:20:12,8:0.4:45,0,43 chr3 50612068 . A T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:16,19:0.542857:50,0,49 chr3 50617104 . G GT 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:50:0,50:1:51,46,0 chr3 50617117 . AG A 32.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:62:33,27:0.435484:32,0,52 chr3 50641813 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:88:32,56:0.636364:52,0,47 chr3 50890109 . G T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:12:5,7:0.583333:43,0,49 chr3 51236342 . T C 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:30:0,30:1:55,50,0 chr3 51237471 . T TA 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:66:34,32:0.484848:44,0,57 chr3 51356275 . C CAG 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:28:1,26:0.928571:51,38,0 chr3 51385335 . T G 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:20:12,8:0.4:30,0,52 chr3 51413256 . T A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:15:0,15:1:53,35,0 chr3 51778936 . C T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:116:74,42:0.362069:46,0,51 chr3 51861834 . C T 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:28:0,28:1:59,49,0 chr3 51873720 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:27:0,27:1:59,48,0 chr3 51874210 . T C 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:28:0,26:0.928571:53,38,0 chr3 51895344 . GA G 40.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:22:0,22:1:40,35,0 chr3 51956103 . A C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:45:0,45:1:50,40,0 chr3 51956299 . A G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:48:0,48:1:49,33,0 chr3 51993837 . T TCCTTGG 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:80:25,49:0.6125:57,0,56 chr3 52202746 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:50:0,50:1:51,36,0 chr3 52203954 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:30:0,30:1:51,32,0 chr3 52204661 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:18:0,18:1:49,32,0 chr3 52222681 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:57:0,57:1:54,41,0 chr3 52224356 . T C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:26:0,26:1:51,30,0 chr3 52291743 . A G 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:45:0,45:1:61,48,0 chr3 52353276 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:39,36:0.48:45,0,53 chr3 52373025 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:71:0,71:1:54,41,0 chr3 52381849 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:45:0,45:1:50,45,0 chr3 52419877 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:57:0,56:0.982456:47,34,0 chr3 52437926 . G A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,17:0.944444:51,33,0 chr3 52458691 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:27:0,27:1:57,46,0 chr3 52472266 . A G 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:52:0,52:1:58,47,0 chr3 52472410 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:62:0,62:1:55,39,0 chr3 52473703 . G C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:32:0,32:1:54,42,0 chr3 52476576 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:66:0,66:1:49,36,0 chr3 52478302 . A G 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:30:1,29:0.966667:48,24,0 chr3 52488643 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:25:0,25:1:47,38,0 chr3 52489389 . C T 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:77:0,77:1:61,44,0 chr3 52510454 . A G 64.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:90:0,90:1:64,48,0 chr3 52512471 . C T 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:59:0,59:1:57,40,0 chr3 52512804 . C T 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:17:9,8:0.470588:40,0,51 chr3 52518906 . C CCCCGCCCCGCCCCGT 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:15,12:0.444444:51,0,46 chr3 52519609 . TGTAA T 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:66:34,31:0.469697:55,0,66 chr3 52520288 . G C 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:125:0,125:1:52,44,0 chr3 52521941 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:87:38,49:0.563218:50,0,45 chr3 52522874 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:73:30,43:0.589041:55,0,57 chr3 52523022 . C T 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:56:30,26:0.464286:42,0,52 chr3 52523992 . T C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:85:51,34:0.4:42,0,48 chr3 52524117 . T C 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:44:31,13:0.295455:39,0,50 chr3 52524888 . A T 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:74:40,34:0.459459:39,0,46 chr3 52525151 . CGGGG C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 1/0:21:20:0,12:0.6:40,26,32 chr3 52525151 . CGGG C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:20:0,6:0.3:40,26,25 chr3 52527763 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:42:22,20:0.47619:55,0,62 chr3 52533601 . A G 25.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:8:5,3:0.375:25,0,40 chr3 52550415 . T TCTC 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:16,19:0.542857:51,0,63 chr3 52550699 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:19,11:0.366667:47,0,54 chr3 52550771 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:32:18,14:0.4375:54,0,60 chr3 52576635 . T A 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:76:42,34:0.447368:38,0,47 chr3 52609291 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:18:6,12:0.666667:53,0,51 chr3 52609669 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:28:15,13:0.464286:49,0,61 chr3 52643371 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:35:21,14:0.4:40,0,54 chr3 52658343 . C G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:28:15,13:0.464286:40,0,49 chr3 52685800 . C T 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:10:6,4:0.4:29,0,50 chr3 52686064 . A C 27.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:84:56,27:0.321429:27,0,44 chr3 52687289 . G A 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:54:36,18:0.333333:46,0,57 chr3 52693241 . G A 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:74:53,21:0.283784:42,0,54 chr3 52694296 . A AT 28.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:25:18,7:0.28:28,0,50 chr3 52705504 . T C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:65:40,25:0.384615:42,0,54 chr3 52706166 . C G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:82:30,52:0.634146:57,0,50 chr3 52744331 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:45:21,24:0.533333:53,0,62 chr3 52763618 . G C 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:42:26,16:0.380952:40,0,53 chr3 52766268 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:111:60,51:0.459459:48,0,58 chr3 52768386 . A C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:147:79,68:0.462585:54,0,48 chr3 52780240 . T A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:16,19:0.527778:52,0,48 chr3 52786965 . A T 61.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:61:94:56,38:0.404255:61,0,67 chr3 52786995 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:124:70,54:0.435484:54,0,68 chr3 52787161 . A C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:100:62,38:0.38:38,0,52 chr3 52787976 . CT C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:89:39,50:0.561798:52,0,52 chr3 52791512 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:26:10,16:0.615385:56,0,53 chr3 52791569 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:33:17,16:0.484848:50,0,61 chr3 52799789 . C A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:62:37,25:0.403226:42,0,49 chr3 52803839 . T C 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:25,18:0.418605:54,0,65 chr3 52818044 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:12,24:0.666667:56,0,47 chr3 52818522 . G T 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:104:62,42:0.403846:41,0,55 chr3 52819385 . C T 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:48:31,17:0.354167:41,0,59 chr3 52819731 . C G 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:56:31,25:0.446429:45,0,54 chr3 52826800 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:88:53,35:0.397727:45,0,55 chr3 52826920 . C T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:116:63,53:0.456897:45,0,47 chr3 52827195 . A T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:67:36,31:0.462687:46,0,56 chr3 52830568 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:98:48,50:0.510204:52,0,55 chr3 52830677 . T G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:27:13,14:0.518519:45,0,48 chr3 52833272 . A T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:38:0,38:1:56,38,0 chr3 52833579 . C A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:17,13:0.433333:47,0,63 chr3 52833699 . G C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:72:0,72:1:58,45,0 chr3 52833795 . A T 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:17:0,17:1:53,30,0 chr3 52834700 . GC G 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:42:22,18:0.428571:38,0,48 chr3 52843704 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:78:0,78:1:55,39,0 chr3 52844809 . C A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:52,39,0 chr3 52852589 . T C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:33,30:0.47619:52,0,53 chr3 52925997 . GC G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:44:0,44:1:51,45,0 chr3 52934785 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:16:0,16:1:53,52,0 chr3 52999065 . C G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:50:19,31:0.62:54,0,54 chr3 53046121 . C A 3.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:8:3,5:0.625:0,0,20 chr3 53046132 . A C 35.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:7:0,7:1:35,26,0 chr3 53046539 . C G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:45:0,44:0.977778:51,38,0 chr3 53075336 . A G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:57:35,22:0.385965:42,0,53 chr3 53077688 . T C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:17,23:0.575:52,0,50 chr3 53091906 . T C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:44:22,21:0.477273:41,0,45 chr3 53092656 . TTGCCCTGGACAAGGC T 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:24:17,7:0.291667:39,0,61 chr3 53099510 . A G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:121:72,49:0.404959:44,0,52 chr3 53103295 . C G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:68:40,28:0.411765:49,0,56 chr3 53165064 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:36:0,36:1:57,41,0 chr3 53178558 . C G 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:87:0,87:1:61,50,0 chr3 53179799 . C CGTGT 42.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:71:0,61:0.859155:42,38,0 chr3 53188745 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:71:0,71:1:52,43,0 chr3 53189275 . T G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:62:0,62:1:53,43,0 chr3 53189911 . C G 62.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:59:0,59:1:62,49,0 chr3 53189986 . T C 66.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:68:0,68:1:66,44,0 chr3 53225980 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:16,18:0.529412:51,0,48 chr3 53229184 . C G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:50:30,20:0.4:51,0,63 chr3 53229263 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:92:50,42:0.456522:54,0,60 chr3 53233117 . G C 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:57:53:0,53:1:61,59,0 chr3 53233139 . G A 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:70:35,35:0.5:54,0,58 chr3 53290885 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:22:11,11:0.5:48,0,53 chr3 53304338 . T C 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:14:9,5:0.357143:42,0,54 chr3 53666523 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:93:0,93:1:58,48,0 chr3 53731999 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:34:0,34:1:55,49,0 chr3 53735452 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:133:0,133:1:56,40,0 chr3 53742968 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:41:0,41:1:57,40,0 chr3 53745798 . A G 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:70:0,70:1:51,40,0 chr3 53780170 . G A 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:61:0,61:1:64,49,0 chr3 53822626 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:58,45,0 chr3 53823776 . A C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:0,54:1:56,44,0 chr3 53848636 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:23:0,23:1:52,34,0 chr3 53848646 . G GT 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:27:0,27:1:50,41,0 chr3 53849695 . C G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:46:0,46:1:53,37,0 chr3 54122697 . G A 25.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:4:0,4:1:25,9,0 chr3 54320483 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:36:0,36:1:54,43,0 chr3 54764231 . G A 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:89:0,89:1:60,46,0 chr3 54846434 . A G 28 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:18:13,5:0.277778:27,0,43 chr3 54885245 . A G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:66:0,66:1:59,42,0 chr3 54927922 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:68:1,67:0.985294:55,46,0 chr3 54984592 . T TG 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:5,9:0.642857:50,0,55 chr3 55004871 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:52:0,52:1:49,37,0 chr3 55074122 . A G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:92:64,27:0.293478:41,0,51 chr3 55074161 . A G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:123:86,37:0.300813:37,0,39 chr3 55074207 . CACTGACTGAGATGTTCTCTT C 18.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:103:56,47:0.456311:18,0,52 chr3 55699362 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:50:0,50:1:50,37,0 chr3 56007159 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:15:7,8:0.533333:54,0,68 chr3 56080833 . T C 28.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:41:30,11:0.268293:28,0,56 chr3 56173420 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:18,18:0.5:47,0,54 chr3 56557250 . T TGGGGTAAGCA 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:85:1,79:0.929412:53,42,0 chr3 56563660 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:13,9:0.409091:48,0,66 chr3 56563665 . G C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:23:9,14:0.608696:54,0,54 chr3 56563926 . C T 60.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:32:0,32:1:60,46,0 chr3 56567016 . G A 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:42:29,13:0.309524:36,0,55 chr3 56593020 . A G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:14:0,14:1:49,27,0 chr3 56593570 . A G 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:51:0,51:1:61,49,0 chr3 56594003 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:117:75,42:0.358974:51,0,50 chr3 56613771 . T C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:13:7,6:0.461538:40,0,50 chr3 56615254 . C T 31.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:99:62,37:0.373737:31,0,47 chr3 56615291 . CTTTA C 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:33:22,11:0.333333:49,0,67 chr3 56623169 . T C 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:34:26,8:0.235294:35,0,56 chr3 56633654 . G C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:56:38,18:0.321429:44,0,60 chr3 56640162 . A C 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:18:0,18:1:48,33,0 chr3 56648813 . A C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:14:7,7:0.5:46,0,56 chr3 56660849 . A G 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:31:14,17:0.548387:52,0,62 chr3 56661032 . T A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:11:4,7:0.636364:47,0,47 chr3 56669718 . A C 8.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:21:18,3:0.142857:7,0,27 chr3 56682894 . T G 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:43:23,20:0.465116:44,0,57 chr3 56729288 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:63:41,22:0.349206:52,0,64 chr3 56729300 . T C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:63:39,24:0.380952:57,0,56 chr3 56729497 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:98:53,45:0.459184:55,0,61 chr3 56729591 . A G 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:50:28,22:0.44:52,0,64 chr3 56737223 . A C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:95:56,39:0.410526:56,0,56 chr3 56801733 . G A 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:110:60,50:0.454545:41,0,53 chr3 57098172 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:100:1,99:0.99:55,45,0 chr3 57102557 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:68:37,31:0.455882:50,0,48 chr3 57103062 . A G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:62:0,62:1:55,40,0 chr3 57104391 . G A 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:75:50,24:0.32:31,0,50 chr3 57105944 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:76:0,76:1:48,29,0 chr3 57106080 . G A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:60,42,0 chr3 57169370 . C A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:51:0,51:1:57,39,0 chr3 57368006 . C A 40.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:6:0,6:1:40,17,0 chr3 57368206 . T C 39.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:5:0,5:1:39,16,0 chr3 57377088 . A G 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:75:0,75:1:61,45,0 chr3 57377263 . T C 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:18:0,18:1:50,35,0 chr3 57380252 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:19:8:0,8:1:45,19,0 chr3 57387226 . A G 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:36:0,36:1:59,42,0 chr3 57402387 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:27:0,27:1:47,40,0 chr3 57428370 . T A 34 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:6:0,5:0.833333:33,16,0 chr3 57428603 . C A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:14:0,14:1:54,33,0 chr3 57433770 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:41:0,41:1:55,45,0 chr3 57437097 . A G 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:15:0,15:1:48,33,0 chr3 57445261 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:69:0,69:1:57,40,0 chr3 57446013 . ATAAATAAATAAT A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:42:0,42:1:48,40,0 chr3 57446258 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:57:0,57:1:57,45,0 chr3 57458090 . T C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:34:0,34:1:53,42,0 chr3 57470644 . T C 45 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:14:0,14:1:44,26,0 chr3 57483326 . A C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:9:0,9:1:44,30,0 chr3 57483370 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:12:0,12:1:48,30,0 chr3 57483545 . C T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:10:0,10:1:47,27,0 chr3 57489624 . T G 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:45:0,45:1:56,44,0 chr3 57556446 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:78:0,78:1:60,44,0 chr3 57641773 . T C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:18:0,18:1:48,38,0 chr3 57672480 . A T 33.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:15:10,5:0.333333:33,0,57 chr3 57896874 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:32:0,32:1:51,37,0 chr3 58098021 . C G 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:65:36,29:0.446154:45,0,53 chr3 58104124 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:24:15,9:0.375:51,0,57 chr3 58124533 . C G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:111:56,53:0.477477:52,0,59 chr3 58126713 . A G 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:103:68,35:0.339806:36,0,58 chr3 58159536 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:62:29,33:0.532258:49,0,54 chr3 58177965 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:20:10,10:0.5:50,0,63 chr3 58193301 . T C 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:66:44,22:0.333333:42,0,56 chr3 58208324 . C A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:60:32,28:0.466667:42,0,50 chr3 58210912 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:48,42:0.461538:49,0,52 chr3 58214627 . A G 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:70:0,70:1:61,39,0 chr3 58382492 . C CT 33.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:23:7,12:0.521739:33,37,0 chr3 58382722 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:22:0,22:1:51,36,0 chr3 58391265 . G A 38.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:7:0,7:1:38,19,0 chr3 58397119 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:76:1,75:0.986842:55,42,0 chr3 58399268 . G A 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:68:0,68:1:60,43,0 chr3 58410136 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:24:0,24:1:49,37,0 chr3 58424704 . A G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:21:0,21:1:56,45,0 chr3 58424827 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:71:0,71:1:52,35,0 chr3 58430808 . C T 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:78:0,78:1:57,48,0 chr3 58430811 . T C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:82:0,82:1:58,47,0 chr3 58431689 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:59:0,59:1:53,44,0 chr3 58526510 . A G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:85:54,31:0.364706:43,0,60 chr3 58526648 . T C 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:48:32,16:0.333333:42,0,50 chr3 58530453 . G A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:51:24,27:0.529412:48,0,47 chr3 58530656 . G A 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:15,22:0.594595:52,0,49 chr3 58531793 . A G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:28,34:0.548387:53,0,56 chr3 58534579 . G C 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:78:52,26:0.333333:36,0,44 chr3 58535132 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:15,16:0.516129:51,0,51 chr3 58537227 . T G 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:71:1,70:0.985915:61,47,0 chr3 58537267 . AGCTCTCAAGCCCTTGTCTGCTCTCAAGCCCTTGTCT A 15.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:49:13,35:0.714286:15,0,47 chr3 58567270 . C A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:83:49,33:0.39759:48,0,52 chr3 58569659 . G T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:18,12:0.4:48,0,56 chr3 58586850 . C G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:56:30,26:0.464286:56,0,60 chr3 58586898 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:74:41,33:0.445946:56,0,63 chr3 58640148 . C A 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:141:73,68:0.482269:42,0,49 chr3 59749515 . C CG 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:93:1,92:0.989247:55,50,0 chr3 59983693 . C T 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:55:38,17:0.309091:38,0,53 chr3 60013964 . T C 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:14,12:0.461538:45,0,56 chr3 60014239 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:57:0,56:0.982456:58,46,0 chr3 61748865 . T C 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:76:49,27:0.355263:42,0,51 chr3 61989708 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:85:49,36:0.423529:38,0,50 chr3 62015828 . G C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:44:26,18:0.409091:49,0,58 chr3 62243879 . C T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:30:0,30:1:49,38,0 chr3 62292588 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:18,18:0.486486:49,0,56 chr3 62374321 . C A 60.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:43:0,43:1:60,42,0 chr3 62445740 . T C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:28:0,27:0.964286:41,30,0 chr3 62512703 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:14:0,14:1:51,29,0 chr3 62570947 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:19:0,19:1:48,40,0 chr3 62626605 . C T 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:68:0,68:1:58,51,0 chr3 62626619 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:47:0,47:1:55,48,0 chr3 62645878 . G T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:15,15:0.5:51,0,53 chr3 62662267 . T A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:28:11,16:0.571429:57,0,62 chr3 62753417 . A G 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:38:0,38:1:61,50,0 chr3 63200625 . C T 35.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:5:0,5:1:35,11,0 chr3 63278525 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:53:31,22:0.415094:49,0,61 chr3 63278640 . C T 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:60:24,36:0.6:57,0,55 chr3 63609360 . G T 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:11:5,6:0.545455:39,0,59 chr3 63864622 . T G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:48:0,48:1:57,47,0 chr3 63864623 . G C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:48:0,47:0.979167:58,44,0 chr3 63912590 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:10:4,6:0.6:44,0,44 chr3 64023832 . T C 17.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:25:21,4:0.16:17,0,51 chr3 64147674 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:65:0,65:1:53,39,0 chr3 64267881 . T G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:9:0,9:1:41,20,0 chr3 64267956 . C G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:34:0,34:1:49,33,0 chr3 64516513 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:45:29,16:0.355556:52,0,60 chr3 64533318 . T C 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:22:0,22:1:59,47,0 chr3 64541266 . A C 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:43:30,13:0.302326:27,0,48 chr3 64541645 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:34:18,16:0.470588:51,0,65 chr3 64541660 . C T 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:28:12,16:0.571429:56,0,60 chr3 64541789 . C A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/0:46:32:0,13:0.40625:57,50,58 chr3 64541789 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:32:0,19:0.59375:57,50,52 chr3 64568578 . T C 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:18:9,9:0.5:41,0,56 chr3 64654530 . TA T 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:59:1,58:0.983051:60,45,0 chr3 65439885 . T TCTG 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:25,27:0.490909:46,0,54 chr3 65478847 . G GT 26.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:6:1,5:0.833333:23,0,0 chr3 65621962 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:79:1,78:0.987342:54,35,0 chr3 66133707 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:64:34,30:0.46875:53,0,47 chr3 66236632 . G A 30.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:90:64,26:0.288889:30,0,53 chr3 66243362 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:41:25,16:0.390244:50,0,64 chr3 66346421 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:16,10:0.384615:46,0,60 chr3 66369532 . C T 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:110:65,45:0.409091:45,0,49 chr3 66380453 . G C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:91:44,47:0.516484:48,0,50 chr3 66380763 . C T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:121:51,70:0.578512:42,0,53 chr3 66382256 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:48:23,24:0.5:53,0,57 chr3 66383948 . T TCACACACACA 18.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:43:11,13:0.302326:18,0,49 chr3 66412827 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:45:0,44:0.977778:54,39,0 chr3 66500332 . G C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:51:0,50:0.980392:57,47,0 chr3 66500338 . G C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:53:0,53:1:53,43,0 chr3 66998338 . T C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:65:0,65:1:56,47,0 chr3 67360742 . A G 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:39:27,12:0.307692:33,0,54 chr3 67375701 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:25:0,25:1:47,36,0 chr3 67409068 . G T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:30:1,29:0.966667:49,36,0 chr3 68417604 . GT G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:103:57,45:0.436893:50,0,63 chr3 68976682 . T C 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:10:6,4:0.4:39,0,55 chr3 68987556 . G A 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:27:8,19:0.703704:37,0,30 chr3 68988482 . G C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:39:16,23:0.589744:50,0,50 chr3 68988937 . A G 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:37:30,7:0.189189:32,0,50 chr3 68989066 . A G 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:30:16,14:0.466667:50,0,58 chr3 69009872 . A C 8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:51:41,10:0.196078:7,0,30 chr3 69044447 . T C 16.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:13:8,5:0.384615:16,0,50 chr3 69047463 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:75:41,34:0.453333:51,0,60 chr3 69055544 . T A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:54:0,54:1:57,42,0 chr3 69077344 . T C 12.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:10:7,3:0.3:12,0,42 chr3 69102001 . C A 36.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:88:52,36:0.409091:36,0,48 chr3 69109080 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:76:47,28:0.368421:44,0,52 chr3 69180875 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:20:12,8:0.4:50,0,71 chr3 69180910 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:51:31,20:0.392157:52,0,62 chr3 69181650 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:65:35,30:0.461538:45,0,47 chr3 69189939 . G A 17.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:25:21,4:0.16:17,0,46 chr3 69193605 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:30:10,20:0.666667:58,0,55 chr3 69193619 . CA C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:40:2,38:0.95:42,35,0 chr3 69195011 . G A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:44:28,16:0.363636:41,0,55 chr3 69196303 . T C 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:40:0,40:1:55,43,0 chr3 69197001 . A G 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:45:31,14:0.311111:38,0,57 chr3 69216220 . G C 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:22:13,9:0.409091:55,0,68 chr3 69218427 . A T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:6:2,4:0.666667:42,0,35 chr3 69302309 . AAG A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:28:18,10:0.357143:50,0,82 chr3 69311353 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:48:27,21:0.4375:39,0,57 chr3 69313555 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:41:18,23:0.560976:51,0,54 chr3 69794509 . T A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:24,12:0.333333:47,0,54 chr3 69965296 . T C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:48:28,20:0.416667:44,0,52 chr3 70197074 . C T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:157:82,73:0.464968:44,0,57 chr3 70965870 . G T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:113:0,113:1:56,38,0 chr3 71198425 . A T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:37:0,37:1:44,29,0 chr3 71244959 . G GA 3.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:114:49,31:0.27193:0,0,45 chr3 71690181 . G GA 27.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:36:12,14:0.388889:27,0,30 chr3 71754023 . C A 32 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:7:3,4:0.571429:31,0,42 chr3 71774431 . C T 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:82:48,34:0.414634:39,0,51 chr3 72446626 . C G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:61:0,61:1:56,44,0 chr3 72750552 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:71:41,30:0.422535:51,0,63 chr3 72814353 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:61:22,39:0.639344:51,0,51 chr3 72908583 . C CAGTGTTTA 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:27:10,16:0.592593:55,0,51 chr3 72922190 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:28:14,14:0.5:50,0,52 chr3 72975199 . C A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:37:0,37:1:56,43,0 chr3 73062217 . T C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:36:24,12:0.333333:41,0,61 chr3 73062658 . A G 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:89:49,40:0.449438:48,0,52 chr3 73062822 . A G 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:27:0,27:1:53,48,0 chr3 73062847 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:29:17,12:0.413793:54,0,60 chr3 73063768 . T TA 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:16:7,9:0.5625:55,0,59 chr3 73384218 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:39,34:0.459459:51,0,47 chr3 73384343 . T C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:74:29,45:0.608108:47,0,46 chr3 73387961 . A G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:56:0,56:1:51,44,0 chr3 73404174 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:62:31,31:0.5:52,0,58 chr3 73433611 . T G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:41:22,19:0.463415:52,0,57 chr3 73602318 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:22:0,22:1:49,32,0 chr3 73602470 . TA T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:25:2,22:0.88:53,51,0 chr3 73624176 . T C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:43:25,18:0.418605:47,0,51 chr3 73624427 . G C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:12:0,12:1:42,24,0 chr3 74369914 . T C 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:57:43,14:0.245614:22,0,47 chr3 75665089 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:24:9,15:0.625:45,0,38 chr3 75665512 . A C 6.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:28:18,10:0.357143:5,0,54 chr3 75665680 . G A 7.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:91:77,14:0.153846:6,0,37 chr3 75665684 . C T 11.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:100:83,17:0.17:11,0,45 chr3 75665825 . C T 3.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:279:149,130:0.46595:0,0,44 chr3 75665936 . T A 29.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:193:124,69:0.357513:29,0,36 chr3 75665948 . T A 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:187:110,77:0.411765:30,0,43 chr3 75666048 . T G 17 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:86:38,48:0.55814:16,0,28 chr3 75666051 . G C 22 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:87:35,43:0.494253:21,0,16 chr3 75666071 . A G 4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:52:22,29:0.557692:1,0,41 chr3 75731922 . C T 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:89:61,28:0.314607:34,0,67 chr3 75736929 . G T 15.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:74:51,23:0.310811:15,0,47 chr3 75737079 . C T 16.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:40:31,9:0.225:16,0,52 chr3 75737230 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:55:18,37:0.672727:51,0,43 chr3 75737289 . C T 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:70:40,30:0.428571:35,0,56 chr3 75737477 . G C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:38:20,18:0.473684:47,0,51 chr3 75737602 . C T 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:28:0,28:1:59,45,0 chr3 75737666 . CACATTCATT C 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:27:21,6:0.222222:0,0,38 chr3 75737681 . C T 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:31:10,21:0.677419:40,0,43 chr3 75737791 . C A 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:39:23,16:0.410256:41,0,50 chr3 75738231 . T C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:33:0,33:1:54,38,0 chr3 75738389 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:90:51,39:0.433333:45,0,54 chr3 75738575 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:25:0,25:1:49,38,0 chr3 75738588 . A T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:22:0,22:1:50,37,0 chr3 75738658 . T C 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:56:39,17:0.303571:48,0,54 chr3 75738859 . A C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:59:0,59:1:53,41,0 chr3 75739007 . G C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:49:31,18:0.367347:43,0,57 chr3 75741293 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:17:1,16:0.941176:38,8,0 chr3 75741362 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,18:1:50,34,0 chr3 75741671 . A G 30.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:37:4,33:0.891892:29,0,11 chr3 75784914 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:87:51,36:0.413793:49,0,51 chr3 77557919 . A AC 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:0,58:1:55,44,0 chr3 77596795 . CT C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:65:2,50:0.769231:48,32,0 chr3 77617785 . CA C 36.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:85:57,28:0.329412:36,0,41 chr3 77635071 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:38:15,23:0.605263:58,0,55 chr3 78617615 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:27:12,15:0.555556:49,0,63 chr3 78627317 . A G 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:54:0,54:1:52,39,0 chr3 78635874 . C T 30.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:143:95,48:0.335664:30,0,47 chr3 78659660 . A AAT 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:26:15,10:0.384615:33,0,44 chr3 78668193 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:83:43,40:0.481928:54,0,56 chr3 78688812 . G A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:61:34,27:0.442623:48,0,60 chr3 78746928 . C A 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:28:0,28:1:57,48,0 chr3 79767728 . C T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:23:12,11:0.478261:54,0,64 chr3 79767741 . C G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:28:14,14:0.5:54,0,62 chr3 81535117 . CT C 26.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:14:2,6:0.428571:26,27,0 chr3 81578024 . T C 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:120:87,32:0.266667:39,0,54 chr3 81578126 . G GA 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:115:70,42:0.365217:48,0,53 chr3 81594016 . T C 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:44:0,44:1:61,42,0 chr3 81648968 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:45:26,19:0.422222:50,0,63 chr3 81670925 . G A 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:64:44,20:0.3125:35,0,54 chr3 81743579 . G A 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:114:78,36:0.315789:35,0,55 chr3 81761551 . A AG 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:71:1,70:0.985915:56,48,0 chr3 81761574 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:62:34,28:0.451613:55,0,59 chr3 87245899 . T C 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:54:32,22:0.407407:42,0,50 chr3 87264203 . C T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:15,7:0.318182:43,0,58 chr3 88139270 . G A 23.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:78:60,18:0.230769:23,0,50 chr3 88140191 . T C 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:66:47,19:0.287879:32,0,49 chr3 88141618 . C A 45.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:7:0,7:1:45,23,0 chr3 88141659 . C T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:14:0,14:1:51,32,0 chr3 88150029 . T C 63.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:28:13,15:0.535714:63,0,61 chr3 88150035 . T TC 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:27:12,15:0.555556:55,0,62 chr3 88150148 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:86:44,42:0.488372:49,0,44 chr3 88465616 . T A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:106:60,46:0.433962:50,0,46 chr3 88466650 . G T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:45:23,22:0.488889:50,0,62 chr3 88466677 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:52:28,24:0.461538:59,0,66 chr3 88467516 . G A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:45:26,19:0.422222:44,0,54 chr3 89407405 . T A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:17:10,7:0.411765:43,0,57 chr3 89472543 . T C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:78:51,27:0.346154:45,0,51 chr3 91436040 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:43:0,43:1:54,36,0 chr3 93764061 . T G 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:19:9,10:0.526316:43,0,50 chr3 93886282 . A G 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:48:36,12:0.25:34,0,50 chr3 94061265 . G C 24.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:20:17,3:0.15:24,0,51 chr3 97483886 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:5,9:0.642857:51,0,51 chr3 97484091 . C G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:12:6,6:0.5:46,0,55 chr3 97646194 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:46:0,46:1:51,37,0 chr3 97646230 . A G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:55:0,55:1:55,46,0 chr3 97747588 . T G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:38:22,16:0.421053:41,0,52 chr3 97766620 . A T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:68:41,27:0.397059:49,0,58 chr3 97822174 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:32:20,12:0.375:46,0,55 chr3 97875417 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:53:21,32:0.603774:54,0,51 chr3 97876535 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:107:62,45:0.420561:49,0,50 chr3 97900406 . C CAACTA 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:7:0,6:0.857143:41,15,0 chr3 97941262 . A C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:45:27,18:0.4:45,0,53 chr3 97941354 . A G 9.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:9:7,2:0.222222:9,0,50 chr3 97945881 . C T 17.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:28:23,5:0.178571:17,0,48 chr3 97947339 . TCTC T 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:53:27,26:0.490566:40,0,56 chr3 97954424 . A C 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:77:0,77:1:59,50,0 chr3 98007903 . A T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:36:20,16:0.444444:50,0,58 chr3 98008909 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:11:4,7:0.636364:44,0,42 chr3 98012590 . C CA 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:23:10,13:0.565217:51,0,61 chr3 98064491 . T C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:43:0,43:1:52,35,0 chr3 98064702 . A G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:81:45,36:0.444444:51,0,60 chr3 98064722 . AT A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:76:42,34:0.447368:53,0,62 chr3 98065007 . T C 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:31:22,9:0.290323:43,0,56 chr3 98065008 . G T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:31:22,9:0.290323:43,0,62 chr3 98065331 . C A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:29:15,14:0.482759:49,0,58 chr3 98087772 . G A 17.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:19:15,4:0.210526:17,0,51 chr3 98133154 . A C 26.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:25:12,13:0.52:26,0,48 chr3 98133239 . C T 18.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:17:12,5:0.294118:18,0,47 chr3 98133385 . T A 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:19:14,5:0.263158:30,0,57 chr3 98149575 . G A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:40:21,19:0.475:39,0,54 chr3 98149772 . C T 32.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:34:24,10:0.294118:32,0,53 chr3 98149951 . A G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:10:3,7:0.7:50,0,44 chr3 98150126 . T A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:23,17:0.425:48,0,57 chr3 98168651 . C G 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:13:6,7:0.538462:36,0,46 chr3 98169021 . G A 27.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:29:22,7:0.241379:27,0,61 chr3 98169353 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:6,8:0.571429:49,0,57 chr3 98264413 . C G 32.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:49:30,19:0.387755:32,0,55 chr3 98264530 . A G 16.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:22:17,5:0.227273:16,0,51 chr3 98264672 . C A 10.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:40:34,6:0.15:10,0,47 chr3 98264717 . G C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:41:30,11:0.268293:41,0,64 chr3 98265098 . A G 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:60:37,22:0.366667:41,0,52 chr3 98283743 . A G 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:22:15,7:0.318182:42,0,58 chr3 98312715 . G A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:44:22,22:0.5:55,0,57 chr3 98354469 . A G 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:27:19,8:0.296296:34,0,50 chr3 98390645 . C T 62.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:19:0,19:1:62,43,0 chr3 98390796 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:58:28,30:0.517241:56,0,52 chr3 98470004 . A G 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:36:26,10:0.277778:33,0,51 chr3 98498334 . T A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:13,11:0.458333:43,0,55 chr3 98501399 . C A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:25:8,17:0.68:51,0,41 chr3 98521473 . T TA 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:43:21,22:0.511628:47,0,55 chr3 98532142 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:76:40,36:0.473684:51,0,50 chr3 98585623 . T C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:143:75,67:0.468531:46,0,50 chr3 98770842 . A G 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:28:18,10:0.357143:44,0,53 chr3 98772775 . G T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:26:10,16:0.615385:50,0,51 chr3 98782284 . A G 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:50:34,16:0.32:50,0,55 chr3 98782920 . CAG C 23.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:17:2,15:0.882353:23,33,0 chr3 98782925 . C G 5.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:16:0,15:0.9375:3,21,0 chr3 98782928 . T C 7.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:18:0,18:1:6,22,0 chr3 98783001 . T C 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:27:14,13:0.481481:35,0,50 chr3 98784932 . A G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:9:4,5:0.555556:46,0,53 chr3 98784948 . A G 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:15:10,5:0.333333:44,0,65 chr3 98793696 . G A 24.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:19:14,5:0.263158:24,0,54 chr3 98812498 . A G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:15,12:0.444444:45,0,57 chr3 98817727 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:10:3,7:0.7:45,0,46 chr3 98881541 . T C 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:28:12,16:0.571429:56,0,60 chr3 99818093 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:67:36,31:0.462687:47,0,47 chr3 99863858 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:68:35,33:0.485294:54,0,52 chr3 100296302 . G T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:18:13,5:0.277778:46,0,63 chr3 100296322 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:12:8,4:0.333333:49,0,64 chr3 100297882 . A AT 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:37:16,19:0.513514:45,0,56 chr3 100306413 . C CT 15.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:36:23,12:0.333333:15,0,54 chr3 100311784 . A AT 30.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:35:20,13:0.371429:30,0,59 chr3 100334840 . C CG 41.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:22:0,22:1:41,34,0 chr3 100368017 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:16:0,16:1:54,38,0 chr3 100373682 . A AG 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:24:1,23:0.958333:52,40,0 chr3 100373684 . T TGCA 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:23:0,21:0.913043:47,33,0 chr3 100374997 . T C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:22:14,8:0.363636:43,0,54 chr3 100451756 . A ATCCTAGAAGGCATTCTCATGAGGACCAGGAATTCCGATGCCGATCGTCTGACCGTCT 38 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:52:8,7:0.134615:37,28,0 chr3 100451981 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:13:0,13:1:48,26,0 chr3 100455878 . G A 59.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:48:0,48:1:59,44,0 chr3 100492755 . T TCC 21.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:65:47,9:0.138462:21,0,44 chr3 100492758 . T C 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:63:48,15:0.238095:37,0,53 chr3 100519216 . T G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:83:0,83:1:60,46,0 chr3 100568860 . A G 17.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:71:56,15:0.211268:17,0,48 chr3 100576889 . A G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:11:4,7:0.636364:44,0,51 chr3 100649848 . A G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:9:2,7:0.777778:47,0,36 chr3 100655896 . T C 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:18:10,8:0.444444:44,0,51 chr3 100709616 . G C 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:49:28,21:0.428571:46,0,51 chr3 100710003 . G C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:53:30,23:0.433962:47,0,51 chr3 100748174 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:143:90,53:0.370629:47,0,59 chr3 100754661 . C T 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:73:50,23:0.315068:37,0,57 chr3 100774578 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:27:13,14:0.518519:53,0,58 chr3 100778254 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:64:28,36:0.5625:53,0,48 chr3 100821043 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:19,23:0.547619:53,0,52 chr3 100832222 . G T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:59:33,26:0.440678:49,0,58 chr3 100862417 . AT A 3.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:28:11,14:0.5:1,0,17 chr3 100875482 . CGGCATA C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:38:17,21:0.552632:57,0,63 chr3 100886362 . A G 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:7:3,4:0.571429:40,0,44 chr3 100898836 . C T 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:81:0,81:1:61,45,0 chr3 100902582 . C A 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:29:0,29:1:56,41,0 chr3 101230998 . G A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:109:59,50:0.458716:45,0,51 chr3 101320263 . A C 31 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:8:5,3:0.375:30,0,40 chr3 101327827 . C A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:34:21,13:0.382353:44,0,52 chr3 101332950 . C T 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:4:1,3:0.75:44,0,39 chr3 101361850 . T C 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:16:6,10:0.625:50,0,52 chr3 101366569 . G A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:63:41,22:0.349206:45,0,47 chr3 101417673 . T C 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:61:44,17:0.278689:32,0,48 chr3 101501045 . G C 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:13:5,8:0.615385:37,0,41 chr3 101513077 . T C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:92:54,38:0.413043:48,0,61 chr3 101561866 . C T 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:28:0,28:1:54,45,0 chr3 101564948 . C G 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:61:44,17:0.278689:38,0,52 chr3 101651685 . TA T 9.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:64:10,32:0.5:9,0,28 chr3 101664718 . G A 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:16,24:0.6:48,0,44 chr3 101664956 . C T 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:39:27,12:0.307692:37,0,57 chr3 101693296 . A G 26 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:41:26,15:0.365854:25,0,40 chr3 101726726 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:17:8,9:0.529412:51,0,57 chr3 101727363 . AAT A 58.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:19:10,9:0.473684:58,0,74 chr3 101765491 . G A 69.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:73:0,73:1:69,53,0 chr3 101852706 . A G 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:16:6,10:0.625:50,0,53 chr3 101857038 . T C 40.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:36:9,27:0.75:40,34,0 chr3 101857185 . T TACTTTTAGAAAGCTTTAATAACC 40.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:70:6,36:0.514286:40,28,0 chr3 101857331 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:25,13:0.342105:49,0,58 chr3 105520046 . CT C 25.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:10:2,7:0.7:25,0,24 chr3 105520057 . T C 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:10:4,6:0.6:41,0,47 chr3 105541674 . G A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:64:0,64:1:50,42,0 chr3 105541752 . T C 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:48:0,48:1:59,49,0 chr3 105670309 . A G 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:61:37,24:0.393443:44,0,53 chr3 105704000 . C T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:57:33,24:0.421053:50,0,58 chr3 105720113 . T G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:106:61,45:0.424528:47,0,57 chr3 105720182 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:98:63,35:0.357143:48,0,60 chr3 105734190 . A G 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:17:0,17:1:51,36,0 chr3 105737144 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:7:4,3:0.428571:46,0,55 chr3 105776588 . G T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:20:0,20:1:55,39,0 chr3 107377700 . G A 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:66:33,31:0.469697:48,0,54 chr3 107710474 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:76:45,31:0.407895:51,0,60 chr3 107729010 . T A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:19:11,8:0.421053:44,0,50 chr3 107733060 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:35:0,35:1:54,40,0 chr3 107744609 . TG T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:28:14,14:0.5:51,0,59 chr3 107772911 . TAGA T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:29:20,9:0.310345:49,0,68 chr3 108090951 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:37:0,37:1:53,47,0 chr3 108219393 . G C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:37:0,36:0.972973:55,41,0 chr3 108362430 . C A 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:75:49,26:0.346667:35,0,54 chr3 108376518 . G A 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:63:44,19:0.301587:30,0,51 chr3 108377251 . C G 27.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:76:54,21:0.276316:27,0,54 chr3 108383739 . T A 16.6 PASS . GT:GQ:DP:AD:VAF:PL 0/0:3:32:8,14:0.4375:13,0,48 chr3 108383739 . TA T 16.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:32:8,6:0.1875:13,0,43 chr3 108391723 . G A 38.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:22:14,8:0.363636:38,0,57 chr3 108416762 . A T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:26:0,26:1:44,31,0 chr3 108428448 . C A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:12:1,11:0.916667:35,5,0 chr3 108439727 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:37:0,37:1:52,40,0 chr3 108453970 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:30:0,30:1:52,37,0 chr3 108455690 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:17:9,8:0.470588:50,0,61 chr3 108460372 . CA C 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:30:0,28:0.933333:51,45,0 chr3 108470146 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:45:0,45:1:54,36,0 chr3 108470780 . C T 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:86:61,25:0.290698:36,0,55 chr3 108470888 . T C 40.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:21:2,19:0.904762:37,1,0 chr3 108510590 . G GA 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:44:16,23:0.522727:38,0,47 chr3 108608203 . T TAAC 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:17:9,8:0.470588:55,0,67 chr3 108636576 . AT A 44.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:9:0,9:1:44,28,0 chr3 108636728 . CT C 28.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:9:1,8:0.888889:28,27,0 chr3 108648131 . A G 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:14:5,8:0.571429:44,0,54 chr3 108684172 . T TG 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:15:5,10:0.666667:50,0,36 chr3 108684239 . T C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:41:0,41:1:47,43,0 chr3 108757127 . G A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:86:56,30:0.348837:40,0,52 chr3 108838973 . T C 29.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:28:20,8:0.285714:29,0,56 chr3 108916126 . C A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:71:41,30:0.422535:48,0,54 chr3 108920576 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:32:0,32:1:55,45,0 chr3 108958974 . C A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:11:0,11:1:48,27,0 chr3 108959155 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:21:0,21:1:51,27,0 chr3 108961586 . G A 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:56:0,56:1:60,45,0 chr3 108963371 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:15:0,15:1:51,33,0 chr3 108971374 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:15:0,15:1:49,30,0 chr3 108984671 . G T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:12:0,12:1:47,28,0 chr3 108984701 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:29:0,29:1:51,39,0 chr3 108986868 . A AT 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:18:2,16:0.888889:54,30,0 chr3 109005355 . A G 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:28:16,12:0.428571:46,0,43 chr3 109007001 . ATTGC A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:44,40,0 chr3 109007015 . T C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:0,33:1:46,42,0 chr3 109007137 . G C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:25:0,25:1:51,36,0 chr3 109054876 . G A 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:13:6,7:0.538462:53,0,57 chr3 109054925 . A G 25.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:6:3,3:0.5:25,0,46 chr3 109057496 . C T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,18:1:54,33,0 chr3 109063105 . G T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:13:7,6:0.461538:44,0,52 chr3 109308310 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:37:16,20:0.540541:50,0,51 chr3 109309030 . C T 35.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:65:44,18:0.276923:35,0,50 chr3 109327954 . T C 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:53:36,17:0.320755:38,0,60 chr3 109330537 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:14,8:0.363636:49,0,59 chr3 111074203 . G A 33.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:29:20,9:0.310345:33,0,58 chr3 111637236 . G C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:29:0,29:1:53,39,0 chr3 111919057 . G A 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:35:0,35:1:59,51,0 chr3 111932438 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:17:10,7:0.411765:47,0,66 chr3 111939639 . T G 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:38:0,38:1:61,50,0 chr3 111940530 . T C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:18:0,18:1:49,33,0 chr3 111953938 . G A 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:38:26,12:0.315789:30,0,53 chr3 111986880 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:23:11,12:0.521739:55,0,64 chr3 111991354 . AT A 47.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:27:0,27:1:47,39,0 chr3 112000758 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:36:17,19:0.527778:55,0,56 chr3 112011744 . G T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:59:33,26:0.440678:53,0,59 chr3 112038183 . C T 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:115:59,56:0.486957:40,0,49 chr3 112038365 . A G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:18:8,10:0.555556:49,0,52 chr3 112039516 . CT C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:73:37,36:0.493151:49,0,51 chr3 112041924 . A G 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:57:0,57:1:59,46,0 chr3 112044238 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:25:0,25:1:52,45,0 chr3 112046987 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:24:0,24:1:48,30,0 chr3 112047712 . T G 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:8:0,8:1:41,20,0 chr3 112066361 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:29:15,14:0.482759:53,0,63 chr3 112075518 . A G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:15,19:0.558824:47,0,55 chr3 112080998 . A T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:75:0,75:1:58,45,0 chr3 112086591 . G GT 48.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:22:0,22:1:48,42,0 chr3 112109537 . G GT 27.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:57:48,9:0.157895:27,0,47 chr3 112109576 . G A 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:43:0,43:1:57,48,0 chr3 112109629 . A G 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:26:19,7:0.269231:32,0,62 chr3 112155055 . T TA 25.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:64:6,37:0.578125:25,25,0 chr3 112169290 . A T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:25:12,13:0.52:51,0,53 chr3 112179540 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:26:15,11:0.423077:53,0,64 chr3 112199368 . C T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:11:5,6:0.545455:46,0,43 chr3 112199369 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:11:0,11:1:47,36,0 chr3 112202269 . C A 32.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:17:13,4:0.235294:32,0,55 chr3 112202378 . G T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:20:0,20:1:50,38,0 chr3 112204200 . G A 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:4:0,4:1:38,9,0 chr3 112204276 . G A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:24:0,24:1:61,45,0 chr3 112231520 . C G 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:15:11,4:0.266667:35,0,49 chr3 112244004 . T C 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:9:7,2:0.222222:22,0,42 chr3 112266260 . T C 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:14:10,4:0.285714:37,0,57 chr3 112277707 . T C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:36:18,18:0.5:46,0,51 chr3 112277879 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:28:11,17:0.607143:53,0,60 chr3 112277883 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:28:18,10:0.357143:47,0,63 chr3 112332700 . A G 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:13:8,5:0.384615:30,0,48 chr3 112340921 . C G 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:50:0,50:1:49,33,0 chr3 112347513 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:18:0,18:1:54,34,0 chr3 112466080 . A G 44.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:24:16,8:0.333333:44,0,61 chr3 112466178 . G A 37.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:86:62,24:0.27907:37,0,51 chr3 112471290 . G T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:82:0,82:1:60,46,0 chr3 112534211 . C CA 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:41:26,12:0.292683:41,0,66 chr3 112548498 . TA T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:29:16,13:0.448276:51,0,62 chr3 112548676 . G A 56.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:35:18,17:0.485714:56,0,66 chr3 112570525 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:21:9,12:0.571429:48,0,57 chr3 112570658 . C T 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:23:13,10:0.434783:42,0,56 chr3 112573918 . C T 14.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:39:30,9:0.230769:13,0,48 chr3 112581344 . T C 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:29:13,16:0.551724:46,0,49 chr3 112819724 . CT C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:10,16:0.615385:46,0,51 chr3 112827459 . C A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:15,10:0.4:47,0,52 chr3 112827626 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:34:26,8:0.235294:43,0,57 chr3 112923721 . C G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:24:0,24:1:53,36,0 chr3 112928766 . T C 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:9:0,9:1:41,18,0 chr3 112928985 . A C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:52:0,52:1:50,38,0 chr3 112929141 . C T 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:19:0,19:1:56,34,0 chr3 112929278 . G T 61.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:40:0,40:1:61,54,0 chr3 112929280 . T G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:41:0,41:1:58,49,0 chr3 112929375 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:39:0,39:1:52,38,0 chr3 112990981 . C G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:43:23,20:0.465116:50,0,52 chr3 112991534 . T C 29.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:110:75,35:0.318182:29,0,48 chr3 113000944 . C CA 10 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:21:5,8:0.380952:7,0,29 chr3 113000944 . C CAA 10 PASS . GT:GQ:DP:AD:VAF:PL 0/0:4:21:5,2:0.0952381:7,2,29 chr3 113005489 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:65:35,30:0.461538:57,0,60 chr3 113005814 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:108:50,58:0.537037:51,0,51 chr3 113008337 . A T 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:60:19,40:0.666667:58,0,50 chr3 113008352 . G A 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:63:40,23:0.365079:40,0,60 chr3 113008460 . T C 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:44:27,17:0.386364:42,0,58 chr3 113030795 . C T 38.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:11:0,11:1:38,23,0 chr3 113031844 . C T 31.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:15:0,15:1:31,28,0 chr3 113031912 . C A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:11:0,11:1:42,27,0 chr3 113031920 . G A 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:10:0,10:1:45,42,0 chr3 113032107 . C T 39.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:10:0,10:1:39,28,0 chr3 113216291 . C G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:40:0,40:1:53,43,0 chr3 113278707 . A G 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:197:111,85:0.431472:41,0,51 chr3 113279418 . A G 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:61:35,26:0.42623:46,0,55 chr3 113279945 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:87:44,43:0.494253:51,0,52 chr3 113283462 . C G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:51:22,29:0.568627:57,0,62 chr3 113291619 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:128:77,51:0.398438:47,0,47 chr3 113294658 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:65:34,31:0.476923:46,0,52 chr3 113296706 . A C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:52:22,29:0.557692:46,0,46 chr3 113304023 . T C 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:110:0,110:1:60,47,0 chr3 113304149 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:14:8,6:0.428571:46,0,53 chr3 113305171 . T C 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:48:24,24:0.5:52,0,58 chr3 113344602 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:90:47,43:0.477778:52,0,55 chr3 113362835 . T C 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:31:21,10:0.322581:39,0,55 chr3 113400562 . G A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:65:43,22:0.338462:45,0,53 chr3 113409204 . G T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:107:54,53:0.495327:50,0,54 chr3 113409356 . A G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:47:28,19:0.404255:43,0,58 chr3 113445262 . A G 5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:14:11,3:0.214286:3,0,45 chr3 113447999 . G GT 17.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:22:12,7:0.318182:17,0,54 chr3 113448000 . A T 28.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:22:11,11:0.5:28,0,42 chr3 113450358 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:72:49,23:0.319444:52,0,60 chr3 113450524 . A AG 7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:24:13,10:0.416667:5,0,36 chr3 113457275 . G A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:89:58,30:0.337079:41,0,52 chr3 113468828 . G C 31.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:48:34,14:0.291667:31,0,52 chr3 113488911 . G A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:11:4,6:0.545455:48,0,50 chr3 113493194 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:25:14,11:0.44:50,0,53 chr3 113503207 . G A 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:33:28,5:0.151515:13,0,39 chr3 113506650 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:27:10,17:0.62963:53,0,52 chr3 113514634 . T G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:135:68,67:0.496296:46,0,56 chr3 113514737 . T C 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:138:79,59:0.427536:39,0,43 chr3 113533195 . C T 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:35:22,13:0.371429:33,0,47 chr3 113567558 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:64:0,64:1:55,38,0 chr3 113581336 . A T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:30:0,30:1:50,39,0 chr3 113656230 . T C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:83:55,28:0.337349:45,0,48 chr3 113657263 . TTGCTGCTGC T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/0:46:46:1,12:0.26087:50,50,58 chr3 113657263 . T TTGC 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:46:1,28:0.608696:50,50,67 chr3 113658514 . A G 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:48:30,18:0.375:46,0,45 chr3 113661018 . G C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:82:42,40:0.487805:48,0,44 chr3 113723951 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:27:15,12:0.444444:51,0,61 chr3 113747010 . GCCCCCCC G 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:26:2,18:0.692308:29,0,0 chr3 113803697 . T C 6.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:23:20,3:0.130435:5,0,35 chr3 113838940 . AGCC A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:61:1,60:0.983607:51,40,0 chr3 113876309 . C G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:15:0,15:1:49,28,0 chr3 113901025 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:30:0,30:1:56,45,0 chr3 113913037 . A C 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:15:0,15:1:44,31,0 chr3 113936360 . C T 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:115:82,33:0.286957:36,0,47 chr3 113954278 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:71:0,71:1:57,47,0 chr3 113960742 . C A 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:31:21,10:0.322581:29,0,57 chr3 114001670 . T A 19.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:101:71,28:0.277228:19,0,38 chr3 114066302 . ATATGT A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:22:14,8:0.363636:48,0,63 chr3 114076987 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:13,10:0.434783:49,0,61 chr3 114082979 . C T 10.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:34:28,6:0.176471:10,0,43 chr3 114139503 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:64:0,64:1:56,38,0 chr3 114171968 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:52:24,28:0.538462:49,0,47 chr3 114236418 . G A 5.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:69:60,9:0.130435:4,0,34 chr3 114236473 . C T 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:71:48,23:0.323944:37,0,51 chr3 114801191 . T A 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:62:30,32:0.516129:38,0,51 chr3 114900360 . T TATATC 41.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:8:0,7:0.875:41,11,0 chr3 118930213 . G T 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:127:0,127:1:54,40,0 chr3 118981764 . A G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:87:40,47:0.54023:55,0,58 chr3 119146485 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:55:29,26:0.472727:55,0,54 chr3 119146762 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:80:45,34:0.425:47,0,45 chr3 119147529 . C T 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:63:40,23:0.365079:41,0,55 chr3 119148200 . C G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:10:5,5:0.5:42,0,62 chr3 119151178 . A AC 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:27:12,15:0.555556:51,0,58 chr3 119190312 . A G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:16:0,16:1:47,29,0 chr3 119191115 . T C 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:36:0,36:1:47,32,0 chr3 119191140 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:24:0,23:0.958333:52,45,0 chr3 119194414 . T TC 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:24:0,24:1:54,41,0 chr3 119212542 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:24:0,24:1:57,44,0 chr3 119229869 . G A 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:47:0,47:1:57,42,0 chr3 119402243 . C A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:103:53,50:0.485437:55,0,53 chr3 119402285 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:95:52,43:0.452632:51,0,65 chr3 119402366 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:137:84,53:0.386861:49,0,58 chr3 119409550 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:132:71,61:0.462121:48,0,57 chr3 119409781 . A G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:41:23,18:0.439024:58,0,56 chr3 119409787 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:31:16,15:0.483871:57,0,56 chr3 119414336 . G A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:57:29,28:0.491228:44,0,56 chr3 119437580 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:22,17:0.435897:48,0,63 chr3 119452433 . C G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:21:9,12:0.571429:56,0,60 chr3 119461954 . T G 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:29:7,22:0.758621:55,0,40 chr3 119586322 . G A 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:57:24,33:0.578947:54,0,48 chr3 119586532 . T A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:76:41,35:0.460526:49,0,56 chr3 119608757 . GC G 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:19:11,8:0.421053:36,0,56 chr3 119608806 . T C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:75:43,32:0.426667:43,0,54 chr3 119609602 . CAGGCTTT C 28.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:26:18,8:0.307692:28,0,59 chr3 119613027 . C T 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:50:25,25:0.5:55,0,59 chr3 119613045 . C G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:65:32,33:0.507692:57,0,61 chr3 119616139 . G A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:62:0,62:1:59,44,0 chr3 119629502 . T TTTA 31.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:34:20,14:0.411765:31,0,30 chr3 119642568 . A G 32.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:10:6,4:0.4:32,0,51 chr3 119643471 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:47:25,22:0.468085:49,0,61 chr3 119648543 . T C 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:104:0,104:1:56,47,0 chr3 119660025 . G A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:65:31,34:0.523077:51,0,50 chr3 119660339 . C T 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:125:65,60:0.48:51,0,48 chr3 119676952 . A C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:89:45,42:0.47191:45,0,54 chr3 119703064 . T A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:11,7:0.388889:49,0,56 chr3 119703087 . A G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:18:11,7:0.388889:41,0,63 chr3 119703116 . C T 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:40:23,17:0.425:42,0,64 chr3 119703259 . C A 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:39:24,15:0.384615:43,0,59 chr3 119707460 . T C 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:27:19,8:0.296296:33,0,54 chr3 119715680 . G C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:79:0,79:1:57,47,0 chr3 119732385 . G C 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:21:15,6:0.285714:32,0,51 chr3 119766329 . A T 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:24:12,12:0.5:45,0,53 chr3 119766739 . A G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:65:31,34:0.523077:56,0,55 chr3 119767102 . A T 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:42:23,19:0.452381:40,0,50 chr3 119912826 . T A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:25:13,12:0.48:44,0,54 chr3 120167701 . G C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:44:0,44:1:57,44,0 chr3 120167929 . T A 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:87:0,87:1:53,38,0 chr3 120181365 . G C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:42:23,19:0.452381:52,0,64 chr3 120185278 . A G 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:37:0,37:1:53,38,0 chr3 120186794 . G A 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:47:0,47:1:59,44,0 chr3 120193450 . C A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:22:14,8:0.363636:44,0,54 chr3 120450794 . T C 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:22:13,9:0.409091:32,0,43 chr3 120646163 . G A 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:19:10,9:0.473684:44,0,58 chr3 120650728 . T G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:56:31,25:0.446429:47,0,61 chr3 120652522 . G A 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:48:36,12:0.25:37,0,65 chr3 120652567 . G A 39.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:82:56,26:0.317073:39,0,56 chr3 120670469 . T A 65.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:117:0,116:0.991453:65,48,0 chr3 120770684 . G A 60 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:35:13,22:0.628571:59,0,61 chr3 120781246 . C T 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:94:42,52:0.553191:56,0,57 chr3 121205917 . C T 34.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:4:1,3:0.75:34,0,24 chr3 121324510 . C A 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:31:26,5:0.16129:5,0,34 chr3 121381269 . GT G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:13:6,7:0.538462:48,0,55 chr3 121419129 . C T 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:37:19,18:0.486486:52,0,58 chr3 121432965 . G C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:73:47,26:0.356164:46,0,55 chr3 121467575 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:77:44,33:0.428571:47,0,57 chr3 121510113 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:90:49,41:0.455556:52,0,59 chr3 121519902 . G A 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:62:0,62:1:54,37,0 chr3 121544873 . C A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:36:0,36:1:53,38,0 chr3 121586086 . G A 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:82:48,34:0.414634:46,0,54 chr3 121621689 . T C 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:41,23:0.359375:41,0,55 chr3 121623210 . C G 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:33,23:0.410714:46,0,56 chr3 121632119 . C G 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:85:48,37:0.435294:47,0,52 chr3 121632468 . G GGGCTCAGGCTCA 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:85:54,27:0.317647:58,0,67 chr3 121634407 . T C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:105:58,47:0.447619:44,0,51 chr3 121635736 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:55,29:0.345238:47,0,61 chr3 121664450 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:29:19,10:0.344828:42,0,54 chr3 121681878 . G A 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:14:8,6:0.428571:35,0,58 chr3 121695214 . C T 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:60:37,22:0.366667:42,0,58 chr3 121696873 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:75:42,33:0.44:45,0,53 chr3 121697776 . G C 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:63:42,21:0.333333:44,0,53 chr3 121716774 . T C 37.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:52:42,10:0.192308:37,0,52 chr3 121716777 . C T 27.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:53:43,10:0.188679:27,0,47 chr3 121795611 . T TA 11.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:38:13,14:0.368421:10,0,31 chr3 121844508 . T C 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:25:18,7:0.28:35,0,49 chr3 121912994 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:18,12:0.4:46,0,55 chr3 121915324 . A AT 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:53:27,26:0.490566:48,0,49 chr3 121922846 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:95:63,32:0.336842:41,0,54 chr3 121923201 . A T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:52:28,24:0.461538:49,0,49 chr3 121924316 . G C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:36:14,22:0.611111:60,0,58 chr3 121924323 . A T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:42:26,16:0.380952:50,0,58 chr3 121924957 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:99:63,36:0.363636:49,0,59 chr3 121925046 . T C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:58:36,22:0.37931:52,0,45 chr3 121927794 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:74:47,27:0.364865:46,0,64 chr3 121928439 . C T 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:74:35,39:0.527027:50,0,60 chr3 121928935 . C G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:48:22,25:0.520833:48,0,59 chr3 121940350 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:37:0,37:1:49,40,0 chr3 121993204 . A C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:169:103,66:0.390533:53,0,52 chr3 121994133 . C T 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:110:70,40:0.363636:52,0,60 chr3 122091580 . CT C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:20:0,20:1:51,35,0 chr3 122106350 . G A 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:77:50,27:0.350649:34,0,61 chr3 122118119 . TGA T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:42:0,42:1:57,46,0 chr3 122257406 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:108:51,57:0.527778:48,0,46 chr3 122281879 . CAT C 14.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:48:31,16:0.333333:14,0,51 chr3 122282024 . C T 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:117:67,49:0.418803:37,0,47 chr3 122284198 . G C 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:66:43,22:0.333333:38,0,55 chr3 122284910 . G T 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:103:58,45:0.436893:35,0,51 chr3 122284985 . G C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:52:32,20:0.384615:51,0,64 chr3 122285251 . A T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:139:80,59:0.42446:49,0,50 chr3 122341427 . A C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:22:9,13:0.590909:51,0,48 chr3 122341557 . C T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:61:36,25:0.409836:45,0,53 chr3 122359830 . TAAAAAAAAAAA T 16.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:35:3,15:0.428571:16,0,49 chr3 122365682 . A G 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:33:19,14:0.424242:44,0,59 chr3 122383203 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:43,31:0.418919:47,0,52 chr3 122402716 . T TTTTC 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:10:3,7:0.7:42,0,48 chr3 122426963 . T A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:42:0,42:1:55,38,0 chr3 122467341 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:30:0,30:1:52,44,0 chr3 122540759 . T C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:40:29,11:0.275:49,0,60 chr3 122540793 . T C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:27:22,5:0.185185:40,0,58 chr3 122558421 . G A 13 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:74:60,14:0.189189:12,0,38 chr3 122568442 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:20:11,9:0.45:49,0,54 chr3 122569363 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:19,16:0.457143:51,0,57 chr3 122577800 . G A 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:55:31,24:0.436364:37,0,54 chr3 122626961 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:33,17:0.34:45,0,56 chr3 122635190 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:41:15,26:0.634146:50,0,47 chr3 122635205 . A G 59.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:35:17,18:0.514286:59,0,66 chr3 122635945 . G A 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:111:67,44:0.396396:43,0,54 chr3 122636079 . T C 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:30:19,11:0.366667:39,0,57 chr3 122718474 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:63:0,63:1:53,38,0 chr3 122718987 . A G 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:28:0,28:1:52,43,0 chr3 122721219 . A G 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:49:0,49:1:59,42,0 chr3 122740443 . G GAGA 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:78:43,34:0.435897:53,0,63 chr3 122740885 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:20,18:0.473684:47,0,62 chr3 122752560 . TA T 18.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:24:5,11:0.458333:18,20,0 chr3 122755458 . C A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:29:12,17:0.586207:45,0,46 chr3 122759185 . C CCA 29.1 PASS . GT:GQ:DP:AD:VAF:PL 0/0:6:15:9,2:0.133333:27,4,32 chr3 122759185 . C CCACA 29.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:15:9,4:0.266667:27,0,37 chr3 122759193 . AC A 17.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:24:15,9:0.375:17,0,43 chr3 122759195 . AC A 12.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:25:16,8:0.32:12,0,44 chr3 122777781 . A C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:81:53,28:0.345679:40,0,50 chr3 122911476 . T G 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:37:0,37:1:52,43,0 chr3 122911499 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:44:0,44:1:52,38,0 chr3 122913049 . A T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:27:0,27:1:55,40,0 chr3 122913454 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:55:29,26:0.472727:53,0,54 chr3 122923568 . G C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:41:24,17:0.414634:53,0,61 chr3 122923743 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:112:58,54:0.482143:50,0,57 chr3 122926353 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:22:9,13:0.590909:58,0,53 chr3 122961324 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:50:26,24:0.48:47,0,48 chr3 122975973 . A T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:59:31,28:0.474576:46,0,46 chr3 122976083 . C T 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:171:83,87:0.508772:45,0,52 chr3 123089148 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:46:24,22:0.478261:53,0,54 chr3 123102538 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:12,13:0.52:47,0,55 chr3 123102824 . A G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:16,12:0.428571:46,0,56 chr3 123102825 . T A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:26:16,10:0.384615:44,0,57 chr3 123124263 . G T 64.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:81:0,81:1:64,46,0 chr3 123124357 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:85:49,35:0.411765:46,0,51 chr3 123124365 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:66:0,66:1:46,45,0 chr3 123145589 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:48:0,48:1:44,31,0 chr3 123146289 . T A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:28:0,28:1:52,43,0 chr3 123155076 . G C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:69:0,69:1:59,44,0 chr3 123161271 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:24:0,24:1:52,41,0 chr3 123223511 . A G 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:20:9,11:0.55:53,0,58 chr3 123223555 . G A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:29:13,16:0.551724:57,0,61 chr3 123246053 . C G 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:21:10,11:0.52381:54,0,56 chr3 123259639 . G A 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:10:6,4:0.4:45,0,52 chr3 123296057 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:20,18:0.473684:53,0,51 chr3 123296247 . G C 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:31:0,31:1:62,48,0 chr3 123300116 . A G 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:150:85,65:0.433333:47,0,48 chr3 123303023 . G C 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:39:23,16:0.410256:48,0,56 chr3 123328819 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:21,27:0.5625:51,0,51 chr3 123367918 . C T 22 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:57:44,13:0.22807:21,0,55 chr3 123390311 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:51:18,32:0.627451:53,0,49 chr3 123390322 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:78:49,29:0.371795:51,0,57 chr3 123418944 . A C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:39:23,16:0.410256:51,0,60 chr3 123420187 . G C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:72:0,72:1:53,36,0 chr3 123448402 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:127:0,127:1:53,38,0 chr3 123550236 . C G 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:23,20:0.465116:55,0,58 chr3 123682213 . C T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:65:37,28:0.430769:46,0,53 chr3 123692742 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:31,32:0.507937:50,0,61 chr3 123700066 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:141:0,139:0.985816:53,43,0 chr3 123722120 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:21:0,21:1:49,33,0 chr3 123732926 . G C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:67:0,67:1:52,37,0 chr3 123733661 . C T 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:27:16,11:0.407407:40,0,52 chr3 123734214 . A G 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:142:91,50:0.352113:22,0,45 chr3 123737585 . C T 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:40:0,40:1:62,41,0 chr3 123738864 . C A 48.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:60:0,60:1:48,39,0 chr3 123739046 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:73:0,73:1:54,38,0 chr3 123793780 . G T 34.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:53:37,16:0.301887:34,0,50 chr3 123876585 . G A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:10:0,10:1:41,24,0 chr3 123887480 . CAA C 33.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:56:19,37:0.660714:33,0,34 chr3 123887482 . A ACAAC 21.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:18:0,18:1:21,0,47 chr3 123887485 . A C 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:48:17,31:0.645833:41,0,38 chr3 123914765 . G A 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:10:6,4:0.4:40,0,54 chr3 123915199 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:35:0,35:1:56,39,0 chr3 123933629 . G A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:21:0,21:1:61,52,0 chr3 123947055 . T G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:64:28,36:0.5625:46,0,50 chr3 123947345 . C T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:17,9:0.346154:47,0,61 chr3 123980298 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:74:43,31:0.418919:48,0,47 chr3 123980452 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:105:54,51:0.485714:49,0,55 chr3 124228048 . G A 4.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:77:62,14:0.181818:2,0,41 chr3 124269192 . T C 61.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:99:0,99:1:61,47,0 chr3 124326102 . C T 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:85:0,85:1:58,43,0 chr3 124563133 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:33:15,18:0.545455:53,0,55 chr3 124584939 . G C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:58:26,32:0.551724:47,0,41 chr3 124632469 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:84:0,84:1:56,43,0 chr3 124632577 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:105:0,105:1:57,44,0 chr3 124637231 . G A 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:59:34,25:0.423729:51,0,54 chr3 124650790 . G A 56.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:88:50,38:0.431818:56,0,59 chr3 124650793 . T TA 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:87:0,87:1:60,54,0 chr3 124650897 . C T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:160:104,56:0.35:46,0,51 chr3 124655558 . A C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:12:2,10:0.833333:47,0,28 chr3 124657806 . G A 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:102:67,35:0.343137:32,0,39 chr3 124658490 . C T 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:108:70,38:0.351852:37,0,58 chr3 124660901 . G C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:39:0,39:1:52,52,0 chr3 124660970 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:80:46,34:0.425:56,0,58 chr3 124693787 . G T 22.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:2:0,2:1:21,5,0 chr3 124700032 . T C 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:59:28,31:0.525424:53,0,55 chr3 124719482 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:102:56,46:0.45098:47,0,51 chr3 124730444 . A G 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:30:0,30:1:60,52,0 chr3 124731474 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:10,15:0.6:49,0,53 chr3 124731590 . ATCT A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:13:6,7:0.538462:45,0,53 chr3 124737895 . G C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:52:30,22:0.423077:45,0,58 chr3 124743961 . C T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:68:33,35:0.514706:51,0,43 chr3 124763597 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:19,25:0.568182:52,0,52 chr3 124764343 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:12,14:0.538462:50,0,48 chr3 124766388 . A G 57.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:24:11,13:0.541667:57,0,56 chr3 124769002 . A G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:39:0,39:1:54,43,0 chr3 124796461 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:81:0,81:1:59,46,0 chr3 124796651 . T C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:126:64,62:0.492063:50,0,56 chr3 124796662 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:119:60,59:0.495798:50,0,49 chr3 124796799 . A C 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:40:26,14:0.35:43,0,48 chr3 124886889 . T C 42.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:10:0,10:1:42,20,0 chr3 124908177 . T G 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:41,23:0.359375:43,0,50 chr3 124913280 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:22:11,11:0.5:54,0,65 chr3 124927747 . A G 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:72:0,72:1:58,52,0 chr3 124927993 . G A 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:52:32,20:0.384615:41,0,53 chr3 124973845 . C T 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:23,14:0.378378:47,0,52 chr3 124973941 . C T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:20:15,5:0.25:36,0,57 chr3 125009782 . A G 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:69:44,25:0.362319:39,0,54 chr3 125012641 . C G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:97:54,43:0.443299:49,0,53 chr3 125012845 . T A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:96:50,46:0.479167:55,0,53 chr3 125013575 . A AGAGGAGGAGGAGGAAGAG 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:63:42,16:0.253968:43,0,55 chr3 125013998 . C A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:44:17,27:0.613636:58,0,56 chr3 125014805 . T G 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:75:39,36:0.48:50,0,51 chr3 125027503 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:53:24,29:0.54717:49,0,59 chr3 125084037 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:71:0,71:1:54,43,0 chr3 125084044 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:57,45,0 chr3 125107564 . T C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:79:40,39:0.493671:44,0,50 chr3 125107634 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:74:38,36:0.486486:54,0,55 chr3 125110376 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:25:11,14:0.56:49,0,51 chr3 125118840 . T C 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:75:0,75:1:60,49,0 chr3 125135792 . A T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:71:0,70:0.985915:50,39,0 chr3 125178017 . C G 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:29:0,29:1:56,40,0 chr3 125232327 . CT C 64.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:83:8,58:0.698795:64,53,0 chr3 125232977 . C T 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:119:0,119:1:53,43,0 chr3 125279254 . C CAAA 6.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:44:1,27:0.613636:5,24,0 chr3 125338817 . T C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:25:0,25:1:51,44,0 chr3 125460888 . C CATAA 60.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:25:8,17:0.68:60,0,59 chr3 125470642 . A G 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:44:30,14:0.318182:38,0,51 chr3 125504612 . C T 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:30:18,12:0.4:47,0,60 chr3 125552139 . GTGTATA G 25.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:19:12,7:0.368421:25,0,53 chr3 125567371 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:22:13,9:0.409091:52,0,71 chr3 125582867 . C G 9.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:8:6,2:0.25:9,0,43 chr3 125756437 . C A 25.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:27:19,8:0.296296:25,0,58 chr3 125757758 . A G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:39:0,39:1:43,33,0 chr3 125766411 . A C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:16:8,8:0.5:45,0,42 chr3 125766420 . G A 43.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:17:8,9:0.529412:43,0,38 chr3 125766731 . G A 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:72:31,41:0.569444:39,0,34 chr3 125766773 . A C 14.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:62:29,33:0.532258:14,0,39 chr3 125766780 . A G 10 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:58:29,29:0.5:9,0,37 chr3 125766783 . A G 26.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:59:30,29:0.491525:26,0,50 chr3 125766784 . A T 5.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:57:30,27:0.473684:4,0,41 chr3 125797829 . G A 12.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:113:83,30:0.265487:12,0,53 chr3 125929513 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:74:43,31:0.418919:49,0,58 chr3 125933680 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:41:18,23:0.560976:48,0,53 chr3 125934448 . A G 51.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:79:0,79:1:51,50,0 chr3 126006491 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:83:53,30:0.361446:49,0,56 chr3 126007205 . G C 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:55:0,55:1:55,40,0 chr3 126015622 . G A 65 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:47:0,47:1:65,46,0 chr3 126022749 . C T 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:25:0,25:1:58,42,0 chr3 126026521 . C A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:51:31,20:0.392157:47,0,51 chr3 126033708 . G A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:56:32,24:0.428571:41,0,50 chr3 126050914 . C T 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:84:49,35:0.416667:48,0,51 chr3 126056385 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:53:0,53:1:56,44,0 chr3 126056585 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:16,14:0.466667:52,0,57 chr3 126067917 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:17:9,8:0.470588:52,0,60 chr3 126068036 . T C 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:70:0,70:1:56,41,0 chr3 126130188 . C T 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:38:0,38:1:48,36,0 chr3 126131350 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:37:0,37:1:57,49,0 chr3 126131538 . A G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:87:0,87:1:54,40,0 chr3 126150546 . ATTTCT A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:13,27:0.675:45,0,58 chr3 126155545 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:43:0,43:1:57,39,0 chr3 126418790 . C T 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:23:13,10:0.434783:44,0,55 chr3 126419935 . T C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:26:0,26:1:53,39,0 chr3 126421741 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:74:43,31:0.418919:47,0,53 chr3 126423653 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:69:32,37:0.536232:52,0,53 chr3 126432954 . T C 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:71:35,36:0.507042:56,0,59 chr3 126433631 . C T 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:151:75,75:0.496689:47,0,50 chr3 126462228 . A C 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:37:24,13:0.351351:38,0,51 chr3 126475514 . G C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:15:0,15:1:49,27,0 chr3 126482527 . G A 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:32:17,15:0.46875:53,0,63 chr3 126496060 . C T 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:134:68,66:0.492537:54,0,50 chr3 126499324 . G A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:59:32,27:0.457627:50,0,53 chr3 126500187 . T C 43.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:30:11,19:0.633333:43,0,49 chr3 126500784 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:153:92,61:0.398693:44,0,53 chr3 126509567 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:66:42,24:0.363636:48,0,59 chr3 126541929 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:20,19:0.487179:50,0,59 chr3 126550110 . T G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:12,13:0.52:50,0,65 chr3 126552080 . G C 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:156:100,56:0.358974:47,0,50 chr3 126611067 . A G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:23:0,23:1:54,34,0 chr3 126621710 . G A 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:21:11,10:0.47619:55,0,63 chr3 126947542 . G A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:78:0,78:1:56,45,0 chr3 127006038 . G C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:26:0,25:0.961538:42,29,0 chr3 127018425 . C A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:80:41,39:0.4875:43,0,50 chr3 127020169 . G T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:49:0,49:1:54,39,0 chr3 127029849 . G A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:16:2,14:0.875:43,0,17 chr3 127032846 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:79:0,79:1:53,44,0 chr3 127575176 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:31:16,14:0.451613:47,0,67 chr3 127599515 . T G 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:43:31,12:0.27907:31,0,55 chr3 127604987 . C T 38.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:133:86,47:0.353383:38,0,51 chr3 127618091 . A G 43.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:14:0,14:1:43,30,0 chr3 127660792 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:72:38,34:0.472222:48,0,55 chr3 127923125 . C A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:21:0,21:1:51,38,0 chr3 127923971 . G C 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:48:30,18:0.375:41,0,50 chr3 128264652 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:28:0,28:1:54,44,0 chr3 128369047 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:70:31,39:0.557143:50,0,56 chr3 128408290 . G A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:28:12,16:0.571429:41,0,52 chr3 128462694 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:134:65,68:0.507463:46,0,52 chr3 128463231 . G A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:41:22,19:0.463415:45,0,55 chr3 128484100 . G C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:75:34,41:0.546667:46,0,48 chr3 128484163 . G T 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:32:0,32:1:55,55,0 chr3 128484192 . A G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:25:17,8:0.32:42,0,58 chr3 128486108 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:89:37,52:0.58427:51,0,51 chr3 128487017 . G C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:145:0,145:1:54,41,0 chr3 128487682 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:26:13,13:0.5:52,0,58 chr3 128487775 . C A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:83:42,41:0.493976:49,0,55 chr3 128487867 . T G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:37:1,36:0.972973:51,39,0 chr3 128625943 . G A 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:32:20,12:0.375:44,0,56 chr3 128638009 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:77:50,27:0.350649:45,0,52 chr3 128895290 . C T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:30:0,30:1:45,34,0 chr3 128895342 . A C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:98:0,98:1:58,48,0 chr3 128908178 . A G 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:75:0,75:1:56,45,0 chr3 128909090 . C T 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:89:45,44:0.494382:41,0,36 chr3 128910485 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:188:97,91:0.484043:49,0,48 chr3 128910662 . C CTGAT 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:174:106,65:0.373563:55,0,62 chr3 128912638 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:74:39,35:0.472973:52,0,54 chr3 128914965 . T C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:37:0,36:0.972973:51,37,0 chr3 128932693 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:40:14,26:0.65:51,0,51 chr3 128932737 . A T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:77:47,30:0.38961:47,0,63 chr3 128933038 . T A 9.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:10:8,2:0.2:8,0,41 chr3 128935109 . A G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:39:0,39:1:52,41,0 chr3 128945112 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:83:39,44:0.53012:57,0,61 chr3 128945811 . G T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:107:55,52:0.485981:53,0,53 chr3 129001644 . A G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:16:0,16:1:54,35,0 chr3 129134779 . C G 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:26:0,26:1:58,42,0 chr3 129140359 . C CTTAG 37.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:29:0,25:0.862069:37,34,0 chr3 129171507 . G A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:34:0,34:1:58,46,0 chr3 129183756 . G T 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:37:0,37:1:47,35,0 chr3 129288847 . G A 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:48:25,23:0.479167:58,0,55 chr3 129301935 . A G 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:40:0,40:1:52,39,0 chr3 129401900 . A G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:53:25,28:0.528302:56,0,53 chr3 129421646 . T C 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:88:57,31:0.352273:35,0,47 chr3 129424234 . G T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:60:29,31:0.516667:53,0,51 chr3 129424248 . G T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:55:25,30:0.545455:53,0,61 chr3 129433084 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:42:19,23:0.547619:53,0,50 chr3 129433246 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:59:27,32:0.542373:53,0,54 chr3 129437693 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:12,10:0.454545:49,0,57 chr3 129467081 . G A 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:15,17:0.53125:49,0,51 chr3 129478265 . TC T 26.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:23:14,9:0.391304:26,0,41 chr3 129483473 . C T 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:46:29,17:0.369565:50,0,51 chr3 129483544 . G T 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:97:54,43:0.443299:47,0,54 chr3 129492134 . G C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:16,9:0.36:47,0,62 chr3 129500101 . G T 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:111:66,45:0.405405:42,0,49 chr3 129528708 . A G 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:13,12:0.48:47,0,56 chr3 129532420 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:142:77,65:0.457746:53,0,55 chr3 129533761 . C A 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:37:16,21:0.567568:50,0,55 chr3 129548416 . G A 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:166:107,59:0.355422:50,0,56 chr3 129551118 . T C 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:51:26,25:0.490196:47,0,53 chr3 129557270 . C T 58.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:29:13,16:0.551724:58,0,62 chr3 129560754 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:31:0,30:0.967742:55,38,0 chr3 129563137 . C T 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:64:0,64:1:56,42,0 chr3 129574340 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:42:0,42:1:53,40,0 chr3 129574413 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:104:65,39:0.375:48,0,54 chr3 129584354 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:67:0,67:1:57,45,0 chr3 129584355 . G A 59.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:67:27,40:0.597015:59,0,60 chr3 129605350 . A G 34.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:9:0,9:1:34,19,0 chr3 129827886 . T C 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:61:0,60:0.983607:59,49,0 chr3 129976091 . C A 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:45:0,45:1:58,41,0 chr3 129976530 . T C 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:39:23,16:0.410256:43,0,44 chr3 129976695 . C T 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:80:0,80:1:62,45,0 chr3 129977111 . T C 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:74:0,74:1:58,48,0 chr3 129977198 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:123:0,123:1:50,33,0 chr3 130091327 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:94:57,37:0.393617:49,0,57 chr3 130097128 . A G 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:50:22,27:0.54:41,0,50 chr3 130144291 . T G 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:21:12,9:0.428571:28,0,40 chr3 130144415 . T C 36.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:45:33,12:0.266667:36,0,52 chr3 130376188 . C T 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:17:9,8:0.470588:43,0,65 chr3 130379414 . A G 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:48:24,24:0.5:56,0,56 chr3 130379506 . G A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:95:53,42:0.442105:40,0,48 chr3 130384866 . G A 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:66:33,33:0.5:49,0,49 chr3 130385219 . T C 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:98:57,40:0.408163:48,0,48 chr3 130385363 . A G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:83:43,40:0.481928:45,0,60 chr3 130388724 . T G 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:20,13:0.393939:45,0,58 chr3 130391414 . C G 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:104:65,39:0.375:39,0,48 chr3 130391707 . A G 29.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:59:43,16:0.271186:29,0,52 chr3 130397852 . A C 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:106:71,35:0.330189:40,0,48 chr3 130398009 . AC A 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:65:37,28:0.430769:56,0,61 chr3 130398128 . G T 4.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:43:17,20:0.465116:1,0,31 chr3 130403565 . TG T 49.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:41:0,37:0.902439:49,37,0 chr3 130405625 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:56:25,31:0.553571:56,0,56 chr3 130405647 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:55:29,26:0.472727:46,0,57 chr3 130406145 . C T 7.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:35:29,6:0.171429:6,0,43 chr3 130406272 . G C 12.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:28:24,4:0.142857:12,0,36 chr3 130415648 . T C 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:40:27,13:0.325:51,0,59 chr3 130415719 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:25,8:0.242424:47,0,50 chr3 130416731 . A T 37.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:27:21,6:0.222222:37,0,56 chr3 130439499 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:30:13,17:0.566667:55,0,55 chr3 130443551 . A G 60.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:23:0,23:1:60,41,0 chr3 130455490 . G A 36 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:5:0,5:1:35,14,0 chr3 130468973 . T C 31.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:82:55,27:0.329268:31,0,49 chr3 130469165 . C T 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:51:32,19:0.372549:44,0,53 chr3 130471786 . G A 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:22:15,7:0.318182:38,0,47 chr3 130471872 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:43:27,16:0.372093:45,0,53 chr3 130471876 . AT A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:43:15,28:0.651163:45,0,56 chr3 130471933 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:9,12:0.571429:46,0,54 chr3 130565440 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:118:59,59:0.5:50,0,49 chr3 130566751 . A T 36.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:83:58,25:0.301205:36,0,56 chr3 130568042 . T C 54.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:32:13,19:0.59375:54,0,55 chr3 130570773 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:13:0,13:1:50,31,0 chr3 130581806 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:46:0,46:1:57,38,0 chr3 130641683 . C T 22 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:55:42,13:0.236364:21,0,40 chr3 130649225 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:62:1,61:0.983871:57,36,0 chr3 130649457 . G A 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:97:56,41:0.42268:49,0,54 chr3 130665129 . G A 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:17:9,8:0.470588:48,0,60 chr3 130705546 . C A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:50:15,35:0.7:52,0,54 chr3 130705549 . C T 60.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:53:16,37:0.698113:60,0,61 chr3 130705806 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:15:6,9:0.6:55,0,56 chr3 130736040 . T TA 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:12:8,4:0.333333:36,0,54 chr3 130893987 . G A 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:31:0,31:1:58,48,0 chr3 130999628 . G A 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:70:45,25:0.357143:48,0,60 chr3 131132842 . G A 41.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:12:6,6:0.5:41,0,40 chr3 131228591 . A T 36.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:73:45,28:0.383562:36,0,50 chr3 131273541 . T C 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:63:37,26:0.412698:47,0,56 chr3 131273613 . G A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:27:18,9:0.333333:46,0,57 chr3 131462825 . T C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:98:61,37:0.377551:46,0,50 chr3 131468049 . CA C 30.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:24:9,12:0.5:30,0,48 chr3 131471128 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:27:11,16:0.592593:54,0,49 chr3 131501527 . T G 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:34:22,12:0.352941:40,0,58 chr3 131542818 . TG T 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:1,19:0.904762:47,40,0 chr3 131905287 . G T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:90:44,46:0.511111:56,0,57 chr3 132037531 . A G 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:49:0,49:1:59,49,0 chr3 132345070 . A T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:24:10,14:0.583333:52,0,58 chr3 132349987 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:36:27,9:0.25:43,0,55 chr3 132350032 . G A 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:18:14,4:0.222222:42,0,61 chr3 132356863 . A G 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:56:24,32:0.571429:32,0,50 chr3 132356899 . G C 59 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:13:6,7:0.538462:58,0,73 chr3 132356902 . G A 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:13:6,7:0.538462:51,0,69 chr3 132356915 . T C 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:8:2,6:0.75:44,0,59 chr3 132417476 . C T 23.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:3:1,2:0.666667:23,0,15 chr3 132447422 . T G 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:79:42,37:0.468354:51,0,54 chr3 132450861 . T TA 3.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:27:13,10:0.37037:1,0,41 chr3 132467343 . G A 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:98:64,34:0.346939:34,0,54 chr3 132477961 . C CT 5.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:46:42,4:0.0869565:3,0,32 chr3 132477971 . TA T 6.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:45:41,4:0.0888889:4,0,57 chr3 132477972 . A T 29.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:43:0,43:1:28,0,5 chr3 132479312 . C T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:29:13,16:0.551724:53,0,62 chr3 132483605 . T A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:43:25,18:0.418605:51,0,56 chr3 132499352 . C T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:15:8,7:0.466667:43,0,55 chr3 132499779 . G T 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:68:0,68:1:58,46,0 chr3 132505284 . G A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:18:12,6:0.333333:39,0,56 chr3 132525562 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:43:0,43:1:56,43,0 chr3 132525793 . T C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:63:41,22:0.349206:44,0,52 chr3 132559022 . G A 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:94:60,34:0.361702:44,0,52 chr3 132619502 . T G 23 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:17:13,4:0.235294:22,0,48 chr3 132628414 . A G 34.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:36:26,10:0.277778:34,0,49 chr3 132671880 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:45:20,25:0.555556:52,0,52 chr3 132675712 . T C 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:27:0,27:1:50,35,0 chr3 132675940 . A T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:27:11,16:0.592593:50,0,49 chr3 132700307 . G C 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:20:12,8:0.4:39,0,60 chr3 132719774 . C T 7.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:58:48,10:0.172414:7,0,39 chr3 133466990 . T C 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:11:5,6:0.545455:49,0,48 chr3 133608613 . T C 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:62:37,25:0.403226:49,0,50 chr3 133611099 . G A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:74:0,74:1:56,50,0 chr3 133616943 . C T 34.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:3:0,3:1:33,3,0 chr3 133649518 . T G 59.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:56:0,56:1:59,39,0 chr3 133656631 . G C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:16:7,9:0.5625:45,0,57 chr3 133746439 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:98:47,51:0.520408:50,0,53 chr3 133755484 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:73:30,43:0.589041:44,0,48 chr3 133764852 . T C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:67:47,20:0.298507:41,0,56 chr3 133766289 . A G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:84:0,84:1:58,53,0 chr3 133768114 . G C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:63:41,22:0.349206:44,0,56 chr3 133775510 . C T 34.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:98:65,33:0.336735:34,0,54 chr3 133805873 . G C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:91:52,38:0.417582:52,0,53 chr3 133838120 . ACCGTGCCGGGCC A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:91:0,91:1:50,49,0 chr3 133973653 . A G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:74:0,74:1:60,46,0 chr3 133979436 . C G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:66:0,66:1:56,47,0 chr3 133979505 . C T 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:160:94,65:0.40625:48,0,51 chr3 134195045 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:5,9:0.642857:53,0,50 chr3 134358628 . C G 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:104:0,104:1:55,45,0 chr3 134361819 . A G 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:20:0,20:1:54,39,0 chr3 134485999 . C G 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:31:17,14:0.451613:42,0,55 chr3 134486229 . G T 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:72:41,31:0.430556:39,0,51 chr3 134486385 . C T 59 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:60:32,28:0.466667:58,0,61 chr3 134486389 . C A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:56:30,26:0.464286:57,0,59 chr3 134486603 . ACCTT A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:48:19,29:0.604167:53,0,63 chr3 134507317 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:37:20,17:0.459459:55,0,62 chr3 134537317 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:44:26,18:0.409091:49,0,57 chr3 134547306 . G C 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:58:0,58:1:56,48,0 chr3 134547479 . A G 33.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:55:36,19:0.345455:33,0,50 chr3 134558353 . A AT 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:45:19,26:0.577778:53,0,47 chr3 134559428 . C T 26 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:44:33,11:0.25:26,0,46 chr3 134561553 . T A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:24:0,24:1:45,29,0 chr3 134574777 . A G 65.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:72:0,72:1:65,55,0 chr3 134603900 . A G 55.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:120:45,75:0.625:55,0,48 chr3 134603972 . G C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:130:77,53:0.407692:46,0,50 chr3 134604314 . A G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:62:0,62:1:58,37,0 chr3 134795737 . T C 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:51:0,51:1:55,45,0 chr3 134925794 . G T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:36:14,22:0.611111:51,0,48 chr3 134951682 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:72:0,72:1:52,38,0 chr3 135132763 . C T 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:60:41,19:0.316667:42,0,50 chr3 135133090 . C T 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:14:10,4:0.285714:34,0,56 chr3 135179900 . C T 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:45:23,22:0.488889:46,0,60 chr3 136002009 . G T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:31,16:0.340426:48,0,54 chr3 136023215 . G GTGTTTTGTTT 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:8,26:0.604651:54,0,63 chr3 136040827 . T TG 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:16:5,11:0.6875:46,0,36 chr3 136261831 . C T 19.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:95:67,28:0.294737:19,0,43 chr3 136283967 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:101:52,49:0.485149:50,0,53 chr3 136284316 . T TGA 29.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:33:28,5:0.151515:29,0,51 chr3 136284317 . T TGTTTCA 24.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:33:28,5:0.151515:24,0,56 chr3 136329135 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:19,12:0.387097:50,0,57 chr3 136854447 . G A 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:7:4,3:0.428571:36,0,51 chr3 136854598 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:43:18,25:0.581395:57,0,61 chr3 136855659 . A G 28.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:41:33,8:0.195122:28,0,56 chr3 136855736 . T TTAA 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:12:7,5:0.416667:47,0,58 chr3 136930621 . C T 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:32:21,11:0.34375:41,0,55 chr3 136959543 . G C 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:31:0,31:1:62,46,0 chr3 138067600 . T C 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:85:53,32:0.376471:48,0,58 chr3 138068205 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:127:72,54:0.425197:49,0,57 chr3 138068350 . T C 44.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:160:98,62:0.3875:44,0,58 chr3 138069121 . T G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:32:20,12:0.375:50,0,63 chr3 138080656 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:20:5,15:0.75:53,0,45 chr3 138081814 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:86:45,41:0.476744:46,0,51 chr3 138084274 . G C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:10,13:0.565217:52,0,51 chr3 138112378 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:58:37,21:0.362069:48,0,60 chr3 138113508 . G T 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:66:39,27:0.409091:34,0,48 chr3 138124252 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:23:13,10:0.434783:41,0,53 chr3 138124264 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:16,10:0.384615:46,0,52 chr3 138124634 . G T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:40:24,16:0.4:47,0,62 chr3 138162423 . T A 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:84:46,38:0.452381:41,0,52 chr3 138163535 . G T 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:12:5,7:0.583333:40,0,46 chr3 138174566 . C A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:17:4,13:0.764706:54,0,48 chr3 138187643 . T C 55 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:104:50,54:0.519231:55,0,56 chr3 138223573 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:32:20,12:0.375:45,0,56 chr3 138262551 . C T 26.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:29:21,8:0.275862:26,0,48 chr3 138314339 . C T 45 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:10:0,10:1:44,20,0 chr3 138348784 . C T 24.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:6:4,2:0.333333:24,0,45 chr3 138348847 . G C 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:36:16,20:0.555556:57,0,50 chr3 138349284 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:91:48,42:0.461538:51,0,52 chr3 138372859 . G T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:22:0,22:1:52,38,0 chr3 138434824 . C G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:49:24,25:0.510204:54,0,56 chr3 138452119 . C G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:40:21,19:0.475:51,0,53 chr3 138457691 . A T 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:36:19,16:0.444444:41,0,52 chr3 138468726 . C T 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:147:79,68:0.462585:41,0,47 chr3 138470189 . T C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:10:0,10:1:46,25,0 chr3 138472390 . G A 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:58:25,33:0.568965:53,0,53 chr3 138472404 . A G 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:87:43,44:0.505747:47,0,56 chr3 138474402 . T G 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:15:9,6:0.4:39,0,64 chr3 138497871 . A C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:36:19,17:0.472222:46,0,55 chr3 138500152 . T C 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:41:29,12:0.292683:38,0,55 chr3 138500593 . AAG A 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:14:8,6:0.428571:56,0,66 chr3 138570321 . T C 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:13:8,5:0.384615:52,0,69 chr3 138570379 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:40:2,38:0.95:52,45,0 chr3 138611020 . G A 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:40:0,40:1:59,42,0 chr3 138622442 . CT C 29.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:10:1,8:0.8:27,0,5 chr3 138714726 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:31:16,14:0.451613:47,0,51 chr3 138946187 . G C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:68:41,27:0.397059:48,0,47 chr3 138946222 . G A 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:64:38,26:0.40625:45,0,61 chr3 138950380 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:46:1,45:0.978261:57,39,0 chr3 139006271 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:96:44,52:0.541667:50,0,42 chr3 139020341 . G A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:28,35:0.555556:55,0,51 chr3 139043865 . C G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:59:31,28:0.474576:46,0,59 chr3 139044501 . T G 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:137:70,66:0.481752:43,0,51 chr3 139104286 . C T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:98:49,49:0.5:49,0,55 chr3 139104784 . T A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:75:38,37:0.493333:47,0,50 chr3 139105531 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:76:38,38:0.5:53,0,51 chr3 139124386 . C T 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:130:64,65:0.5:51,0,49 chr3 139124850 . A AT 39.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:48:34,14:0.291667:39,0,53 chr3 139125028 . G A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:14:7,7:0.5:43,0,48 chr3 139379515 . A C 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:41:0,41:1:58,49,0 chr3 139383278 . C A 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:32:0,32:1:53,43,0 chr3 139462077 . ATG A 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:24:8,16:0.666667:49,0,52 chr3 139538761 . A G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:51:23,28:0.54902:49,0,49 chr3 139539569 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:113:58,55:0.486726:47,0,50 chr3 140448694 . A G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:36:0,36:1:56,41,0 chr3 140459643 . G A 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:65:39,26:0.4:45,0,62 chr3 140459796 . CCCT C 41.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:23:0,23:1:41,26,0 chr3 140556530 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:74:44,30:0.405405:50,0,58 chr3 140558892 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:25:13,12:0.48:52,0,63 chr3 140566273 . T C 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:37:18,19:0.513514:44,0,50 chr3 140678569 . T A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:22,26:0.541667:49,0,54 chr3 140682851 . A G 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:95:0,95:1:61,41,0 chr3 140688105 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:127:61,66:0.519685:48,0,51 chr3 140688418 . C A 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:91:45,46:0.505495:50,0,46 chr3 140700873 . C T 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:23,24:0.510638:55,0,48 chr3 141066087 . T C 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:14:4,10:0.714286:45,0,39 chr3 141066333 . C A 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:48:27,21:0.4375:48,0,56 chr3 141279372 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:52:0,52:1:57,42,0 chr3 141778308 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:50:29,21:0.42:47,0,60 chr3 141963908 . T C 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:40,21:0.344262:43,0,50 chr3 141971511 . C T 60.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:29:15,13:0.448276:60,0,67 chr3 141971579 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:64:37,27:0.421875:54,0,62 chr3 141971892 . T C 43.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:55:32,21:0.381818:43,0,52 chr3 142005486 . T C 30.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:21:15,6:0.285714:30,0,49 chr3 142186411 . C A 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:7:2,5:0.714286:41,0,27 chr3 142186417 . T G 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:7:1,6:0.857143:39,0,24 chr3 142186419 . T G 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:6:1,5:0.833333:30,0,25 chr3 142186453 . T A 29.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:8:5,3:0.375:29,0,42 chr3 142198968 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:25:13,12:0.48:54,0,61 chr3 142204664 . C T 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:12:1,11:0.916667:37,0,3 chr3 142213514 . G A 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:24,13:0.351351:47,0,50 chr3 142215551 . CA C 31.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:9:2,6:0.666667:31,0,21 chr3 142397309 . A G 35.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:9:6,3:0.333333:35,0,54 chr3 142404999 . C T 13.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:75:58,16:0.213333:12,0,40 chr3 142449489 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:35:0,35:1:57,40,0 chr3 142459302 . C T 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:106:59,47:0.443396:45,0,52 chr3 142536248 . T C 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:9:3,5:0.555556:38,0,43 chr3 142540864 . CA C 18.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:27:12,11:0.407407:18,0,49 chr3 142558585 . A G 4.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:31:18,12:0.387097:2,0,52 chr3 142558733 . A T 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:62:38,24:0.387097:35,0,54 chr3 142562770 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:18,26:0.590909:50,0,56 chr3 142656975 . G A 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:47:32,15:0.319149:38,0,52 chr3 142689764 . G A 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:64:44,20:0.3125:39,0,45 chr3 142694565 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:12,11:0.478261:50,0,53 chr3 143054896 . C T 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:17:0,17:1:56,41,0 chr3 143848365 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:24:0,24:1:57,46,0 chr3 146070680 . T C 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:24:0,24:1:50,32,0 chr3 146071016 . T C 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:23:0,23:1:60,42,0 chr3 146085351 . T C 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:39:0,39:1:59,45,0 chr3 146085355 . T A 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:27:0,27:1:48,31,0 chr3 146086737 . C A 37.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:5:0,5:1:37,15,0 chr3 146102897 . G A 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:45:0,45:1:63,50,0 chr3 146106691 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:34:0,34:1:54,34,0 chr3 146110469 . G GT 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:38:2,36:0.947368:52,37,0 chr3 146121108 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:45:0,45:1:52,40,0 chr3 146199974 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:35:21,14:0.4:48,0,65 chr3 146220832 . T C 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:51:26,25:0.490196:46,0,57 chr3 146460028 . C T 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:45:28,17:0.377778:50,0,62 chr3 146525582 . G T 15.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:8:5,3:0.375:15,0,46 chr3 147393992 . T C 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:57:0,57:1:60,47,0 chr3 148731289 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:40:0,40:1:52,40,0 chr3 148741608 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:76:45,31:0.407895:45,0,57 chr3 148840660 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:17,30:0.638298:55,0,49 chr3 148844523 . G A 31.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:93:72,21:0.225806:31,0,44 chr3 148844610 . G C 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:39,16:0.290909:44,0,56 chr3 148844612 . G A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:48:33,15:0.3125:43,0,54 chr3 148879825 . C T 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:25:0,24:0.96:57,47,0 chr3 148886072 . C A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:60:25,35:0.583333:54,0,55 chr3 148994232 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:161:84,74:0.459627:51,0,55 chr3 149039038 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:23:0,23:1:52,39,0 chr3 149068321 . C T 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:36:25,11:0.305556:33,0,59 chr3 149150574 . C T 62.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:52:23,29:0.557692:62,0,58 chr3 149155200 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:38:24,14:0.368421:49,0,59 chr3 149163886 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:11,7:0.388889:45,0,49 chr3 149167290 . C T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:62:39,23:0.370968:43,0,56 chr3 149167992 . A AT 33.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:35:18,14:0.4:33,0,54 chr3 149178643 . A G 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:46:31,15:0.326087:38,0,53 chr3 149198448 . T A 44.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:24:0,24:1:44,35,0 chr3 149321537 . G A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:6,12:0.631579:55,0,49 chr3 149369927 . T C 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:12:0,12:1:45,24,0 chr3 149375451 . A G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:71:0,71:1:58,44,0 chr3 149474889 . G A 65.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:57:84:0,84:1:65,57,0 chr3 149475064 . G GC 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:31:1,30:0.967742:54,44,0 chr3 149572818 . CA C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:29:13,15:0.517241:47,0,51 chr3 149741554 . A G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:65:38,27:0.415385:44,0,48 chr3 149768114 . T TG 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:22:14,8:0.363636:43,0,56 chr3 149770522 . A G 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:31:15,16:0.516129:45,0,56 chr3 149770655 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:77:44,33:0.428571:48,0,48 chr3 149812838 . C T 38.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:102:67,35:0.343137:38,0,45 chr3 149813390 . T G 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:36:0,36:1:56,42,0 chr3 149895445 . ATTT A 28.8 PASS . GT:GQ:DP:AD:VAF:PL 1/0:2:31:5,16:0.516129:24,0,16 chr3 149895445 . ATT A 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:31:5,5:0.16129:24,0,20 chr3 149960747 . C T 60.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:70:33,37:0.528571:60,0,57 chr3 149968580 . AC A 26.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:59:10,49:0.830508:26,22,0 chr3 149982732 . T C 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:144:68,76:0.527778:41,0,46 chr3 149983326 . CG C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:33:9,24:0.727273:45,0,40 chr3 150544531 . C T 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:30:15,15:0.5:52,0,55 chr3 150667020 . T G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:45:25,20:0.444444:40,0,43 chr3 150680524 . C A 21.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:71:53,18:0.253521:21,0,44 chr3 150685962 . T C 14.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:19:16,3:0.157895:14,0,52 chr3 150703632 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:117:64,51:0.435897:44,0,55 chr3 150885461 . G GAAAAGC 55.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:52:31,20:0.384615:55,0,62 chr3 151085984 . T G 24.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:2:0,2:1:22,3,0 chr3 151127787 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:34:15,18:0.529412:53,0,58 chr3 151128008 . C G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:24:15,9:0.375:44,0,64 chr3 151163987 . A C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:60:34,26:0.433333:50,0,53 chr3 151294181 . G A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:48:23,25:0.520833:52,0,51 chr3 151294709 . T C 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:63:35,28:0.444444:48,0,62 chr3 151295108 . C T 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:68:37,31:0.455882:52,0,55 chr3 151328520 . G A 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:19,17:0.472222:49,0,54 chr3 151338810 . A C 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:155:81,74:0.477419:46,0,54 chr3 151340653 . A G 28.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:80:50,29:0.3625:28,0,56 chr3 151360428 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:18:8,10:0.555556:51,0,52 chr3 151372816 . G A 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:45:33,12:0.266667:36,0,49 chr3 151377207 . G A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:38:22,16:0.421053:48,0,60 chr3 151388204 . C T 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:31:18,13:0.419355:43,0,54 chr3 151436878 . T C 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:50:0,50:1:58,50,0 chr3 151437832 . G A 55.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:31:0,31:1:55,35,0 chr3 151443214 . G A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:51:28,23:0.45098:51,0,60 chr3 151447890 . T C 61.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:64:0,64:1:61,50,0 chr3 151448634 . C T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:57:0,57:1:57,41,0 chr3 151453651 . A C 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:85:0,84:0.988235:57,45,0 chr3 151453754 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:43:0,43:1:53,36,0 chr3 151460920 . G A 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:33:1,32:0.969697:55,40,0 chr3 151461048 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:76:40,36:0.473684:47,0,51 chr3 151745633 . G T 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:93:58,35:0.376344:34,0,51 chr3 151817634 . G A 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:25:0,25:1:58,44,0 chr3 151824620 . AAAAC A 43.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:20:0,20:1:43,27,0 chr3 151827530 . A T 36.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:13:0,13:1:36,35,0 chr3 151827533 . GT G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:12:0,12:1:41,31,0 chr3 151827535 . T G 43.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:12:0,12:1:43,36,0 chr3 151827813 . G A 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:33:0,33:1:55,39,0 chr3 154122077 . G C 64 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:112:0,112:1:63,48,0 chr3 154122170 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:66:38,28:0.424242:53,0,63 chr3 154122171 . T C 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:67:0,67:1:53,46,0 chr3 154122373 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:56:32,24:0.428571:49,0,59 chr3 154122600 . T C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:50:27,23:0.46:53,0,57 chr3 154152722 . G A 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:10:3,7:0.7:47,0,41 chr3 154240385 . C T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:28,21:0.428571:49,0,51 chr3 154254711 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:93:0,93:1:56,40,0 chr3 154276713 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:37:16,21:0.567568:47,0,53 chr3 154276714 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:37:16,21:0.567568:43,0,58 chr3 154284568 . A AT 32.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:32:14,15:0.46875:32,0,43 chr3 154292726 . AACACAC A 29 PASS . GT:GQ:DP:AD:VAF:PL 1/0:9:40:1,34:0.85:28,11,34 chr3 154292726 . AACAC A 29 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:40:1,4:0.1:28,11,20 chr3 155079630 . T TG 25.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:76:49,22:0.289474:24,0,3 chr3 155079638 . GT G 15.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:79:68,11:0.139241:15,0,51 chr3 155079639 . T G 27.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:68:0,68:1:26,0,7 chr3 155090088 . G A 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:74:35,39:0.527027:53,0,53 chr3 155494536 . G GA 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:48:1,46:0.958333:50,41,0 chr3 155523951 . A G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:48:0,48:1:54,42,0 chr3 155554036 . G A 42.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:13:0,13:1:42,29,0 chr3 155596245 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:53:0,53:1:56,41,0 chr3 155763820 . G A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:31:0,31:1:56,43,0 chr3 155767513 . C T 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:60:0,60:1:60,44,0 chr3 156456039 . A T 65.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:84:0,84:1:65,51,0 chr3 156531425 . T C 56.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:117:67,50:0.42735:56,0,56 chr3 156544443 . C G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:28:14,14:0.5:47,0,55 chr3 156548853 . C T 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:23:0,23:1:54,41,0 chr3 156548985 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:99:55,44:0.444444:49,0,49 chr3 156553806 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:18:11,7:0.388889:52,0,69 chr3 156553819 . G A 64.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:62:15:8,7:0.466667:64,0,65 chr3 156703736 . G T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:18:0,18:1:55,44,0 chr3 156826795 . C T 59.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:83:0,83:1:59,48,0 chr3 156979308 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:47,39,0 chr3 157149987 . G GAA 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:45:0,43:0.955556:56,49,0 chr3 157152270 . C T 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:14:9,5:0.357143:40,0,51 chr3 157153027 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:32:18,14:0.4375:49,0,54 chr3 157159014 . T G 45.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:12:5,7:0.583333:45,0,58 chr3 157159487 . CAA C 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:97:46,51:0.525773:46,0,62 chr3 157159918 . A T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:83:50,33:0.39759:50,0,57 chr3 157261130 . A AT 44.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:63:0,63:1:44,42,0 chr3 157265484 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:18:0,18:1:55,38,0 chr3 157265625 . T C 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:64:39,25:0.390625:42,0,49 chr3 157286534 . A C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:25:10,15:0.6:55,0,47 chr3 157363535 . A G 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:43:20,23:0.534884:48,0,51 chr3 157364293 . C CAA 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:22:0,22:1:50,46,0 chr3 157413999 . A C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:91:51,40:0.43956:46,0,44 chr3 157428518 . A T 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:24:0,24:1:56,47,0 chr3 157437072 . A G 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:31:0,31:1:57,42,0 chr3 157437525 . C A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:42:0,42:1:55,48,0 chr3 157572081 . G A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:11:5,6:0.545455:41,0,48 chr3 158102634 . C T 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:28:0,28:1:52,38,0 chr3 158103215 . G C 65.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:105:0,105:1:65,46,0 chr3 158105032 . GC G 28.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:32:6,18:0.5625:28,20,0 chr3 158110533 . T C 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:105:66,39:0.371429:44,0,50 chr3 158592602 . CAGTT C 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:30:17,13:0.433333:45,0,67 chr3 158819626 . CT C 9.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:16:8,8:0.5:8,27,0 chr3 160285765 . T C 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:18:9,9:0.5:49,0,50 chr3 160285889 . T C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:41:22,19:0.463415:41,0,54 chr3 160303893 . G A 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:21:13,8:0.380952:46,0,55 chr3 160412322 . G A 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:15:7,8:0.533333:49,0,51 chr3 160419575 . C CT 17.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:14:6,7:0.5:17,0,39 chr3 160424830 . A C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:38:18,20:0.526316:47,0,58 chr3 160425022 . A ATGTGTGTGTGTG 9.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:108:8,71:0.657407:6,1,0 chr3 160426231 . GA G 3.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:7:5,2:0.285714:1,0,39 chr3 160677305 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:39:15,24:0.615385:48,0,45 chr3 160756752 . CGTGTGTGTGTGTGT C 27.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:49:39,8:0.163265:27,0,30 chr3 160961956 . A T 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:9:0,9:1:41,26,0 chr3 161104141 . T C 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:45:19,26:0.577778:57,0,68 chr3 161105371 . G A 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:23:15,8:0.347826:33,0,50 chr3 161221988 . T A 27.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:57:23,21:0.368421:27,0,49 chr3 161238091 . G T 43.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:37:22,15:0.405405:43,0,63 chr3 161238094 . CTT C 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:40:16,13:0.325:36,0,60 chr3 161246483 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:16:7,9:0.5625:54,0,58 chr3 161249566 . G A 39.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:43:25,18:0.418605:39,0,48 chr3 161372828 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:14,22:0.611111:48,0,54 chr3 164996744 . C T 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:13:0,13:1:52,32,0 chr3 165015933 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:43:27,16:0.372093:52,0,61 chr3 165032544 . A C 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:61:40,21:0.344262:43,0,48 chr3 165042983 . T C 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:33:22,11:0.333333:41,0,52 chr3 165046931 . C A 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:69:43,26:0.376812:45,0,52 chr3 165049047 . T C 35.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:14:4,10:0.714286:35,0,42 chr3 165055169 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:23:14,9:0.391304:48,0,62 chr3 165055269 . G A 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:65:40,25:0.384615:41,0,63 chr3 165059125 . C CAT 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:58:33,20:0.344828:49,0,59 chr3 165059889 . T G 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:34,22:0.392857:46,0,55 chr3 165063580 . G A 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:8:5,3:0.375:42,0,54 chr3 165065377 . T C 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:50:31,19:0.38:38,0,46 chr3 165065464 . AAT A 8.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:7:0,7:1:7,8,0 chr3 165065474 . T G 23.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:5:0,5:1:23,19,0 chr3 165067408 . C T 11 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:55:46,9:0.163636:10,0,35 chr3 165067550 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:10:4,6:0.6:50,0,43 chr3 165068608 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:17:12,5:0.294118:38,0,55 chr3 165068625 . A G 37.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:19:12,7:0.368421:37,0,60 chr3 165068841 . TA T 17.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:38:26,9:0.236842:17,0,50 chr3 165188532 . A T 53.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:113:61,52:0.460177:53,0,54 chr3 165189018 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:93:50,43:0.462366:47,0,50 chr3 167327913 . CA C 3.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:29:7,10:0.344828:1,0,33 chr3 167333938 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:28:15,13:0.464286:46,0,58 chr3 167359903 . T A 56 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:41:0,41:1:56,42,0 chr3 167360756 . T C 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:22:13,9:0.409091:42,0,52 chr3 167449312 . C T 61 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:62:39,23:0.370968:60,0,61 chr3 167449398 . T A 41.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:46:32,14:0.304348:41,0,52 chr3 167467090 . T C 40.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:34:25,9:0.264706:40,0,52 chr3 167471819 . A C 42.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:39:23,16:0.410256:42,0,54 chr3 167500176 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:61:30,31:0.508197:50,0,56 chr3 167725368 . T C 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:46:25,21:0.456522:53,0,57 chr3 167734716 . A G 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:138:83,55:0.398551:47,0,48 chr3 167735915 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:92:48,44:0.478261:50,0,55 chr3 167736181 . A G 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:21:0,21:1:55,49,0 chr3 169146205 . G GA 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:88:10,63:0.715909:59,45,0 chr3 169146762 . T A 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:59,39,0 chr3 169146855 . A C 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:26:24:1,23:0.958333:55,26,0 chr3 169147363 . C T 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:54:0,54:1:61,47,0 chr3 169381204 . G A 53.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:63:34,29:0.460317:53,0,63 chr3 169837608 . C T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:52:27,25:0.480769:51,0,58 chr3 170037757 . C T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:28:14,14:0.5:50,0,61 chr3 170037803 . CA C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:63:0,63:1:51,42,0 chr3 170038109 . A T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:16:6,10:0.625:46,0,52 chr3 170039058 . C T 48.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:22:7,15:0.681818:48,0,47 chr3 170268041 . AT A 52.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:26:11,15:0.576923:52,0,54 chr3 170270498 . C T 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:94:61,33:0.351064:45,0,60 chr3 170360444 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:119:69,49:0.411765:47,0,61 chr3 170481178 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:25:10,15:0.6:50,0,55 chr3 170486417 . T A 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:34:18,16:0.470588:46,0,59 chr3 171009912 . G GGT 18.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:103:14,77:0.747573:18,0,11 chr3 171108116 . C G 29.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:97:64,33:0.340206:29,0,48 chr3 171139451 . T C 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:39:25,14:0.358974:38,0,61 chr3 171167308 . C T 36 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:23:16,7:0.304348:35,0,54 chr3 171175281 . G A 25.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:66:50,16:0.242424:25,0,48 chr3 171194680 . T A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:48:27,21:0.4375:49,0,49 chr3 171347221 . G GA 33.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:32:5,20:0.625:33,36,0 chr3 171347242 . G C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:32:0,31:0.96875:51,44,0 chr3 171369680 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:25:14,11:0.44:51,0,64 chr3 171714065 . AT A 38.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:37:25,12:0.324324:38,0,60 chr3 172329071 . T C 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:70:32,38:0.542857:38,0,51 chr3 172346301 . G A 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:39:21,18:0.461538:49,0,47 chr3 172447937 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:102:54,48:0.470588:50,0,50 chr3 172448243 . G A 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:80:0,80:1:60,45,0 chr3 172506513 . A G 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:49:30,19:0.387755:47,0,50 chr3 172648042 . T G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:157:90,67:0.426752:45,0,60 chr3 172710992 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:67:0,67:1:57,46,0 chr3 172755269 . C CAT 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:20:12,8:0.4:47,0,61 chr3 172762383 . A ATT 32.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:12:8,4:0.333333:32,0,52 chr3 172762384 . AC A 39.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:12:8,4:0.333333:39,0,53 chr3 172803028 . G C 36 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:3:0,3:1:35,8,0 chr3 172816869 . C T 25.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:4:2,2:0.5:25,0,36 chr3 172828615 . CT C 30.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:62:9,40:0.645161:30,45,0 chr3 172913671 . A G 28 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:37:31,6:0.162162:27,0,47 chr3 172913722 . G A 16.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:43:36,7:0.162791:16,0,51 chr3 172925510 . G A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:41:27,14:0.341463:50,0,56 chr3 173117335 . T C 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:70:35,35:0.5:47,0,54 chr3 173117500 . C T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:100:52,48:0.48:56,0,52 chr3 173584787 . A AG 47 PASS . GT:GQ:DP:AD:VAF:PL 1/0:6:57:1,31:0.54386:45,8,36 chr3 173584787 . A AGGG 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:57:1,13:0.22807:45,8,43 chr3 174279363 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:64:0,64:1:56,38,0 chr3 174864098 . T C 59 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:72:0,72:1:58,47,0 chr3 175096948 . G A 34.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:42:31,11:0.261905:34,0,48 chr3 175097130 . A G 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:50:24,26:0.52:55,0,58 chr3 175124609 . C A 27.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:23:17,6:0.26087:27,0,46 chr3 175233966 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:22:0,22:1:52,39,0 chr3 175256388 . C G 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:11,7:0.388889:45,0,50 chr3 175447291 . C T 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:99:0,99:1:62,49,0 chr3 175447413 . T G 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:22:0,22:1:54,47,0 chr3 175471618 . CT C 38.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:6:0,6:1:38,15,0 chr3 175471629 . G A 34.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:6:1,5:0.833333:33,0,7 chr3 175471659 . G A 39.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:11:0,11:1:39,20,0 chr3 175627355 . C G 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:40:0,40:1:50,44,0 chr3 175755259 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:67:0,67:1:54,40,0 chr3 178828164 . C T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:33:16,17:0.515152:50,0,53 chr3 178828238 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:88:0,88:1:57,49,0 chr3 178842793 . A C 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:43:0,43:1:51,34,0 chr3 179067761 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:47:0,47:1:56,42,0 chr3 179199217 . A G 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:19:11,8:0.421053:43,0,57 chr3 179204486 . C A 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:36:0,36:1:62,53,0 chr3 179209622 . A G 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:75:51,24:0.32:42,0,51 chr3 179220959 . A T 41.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:68:40,27:0.397059:41,0,58 chr3 179239995 . C T 34.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:93:75,18:0.193548:34,0,51 chr3 179242978 . CT C 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:77:45,32:0.415584:42,0,57 chr3 179244703 . G GA 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:38:24,11:0.289474:36,0,59 chr3 179244729 . T C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:30:18,12:0.4:42,0,56 chr3 179258911 . A G 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:14,17:0.548387:48,0,57 chr3 179258989 . C T 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:38:25,13:0.342105:43,0,56 chr3 179334134 . C T 5.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:34:29,5:0.147059:4,0,38 chr3 179367991 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:12:6,6:0.5:49,0,58 chr3 179368003 . C T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:14:7,7:0.5:47,0,57 chr3 179375201 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:16:3,13:0.8125:51,0,35 chr3 179385554 . C CT 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/0:27:45:1,24:0.533333:51,30,40 chr3 179385554 . C CTT 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:45:1,16:0.355556:51,30,51 chr3 179391947 . A G 53.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:30:13,17:0.566667:53,0,59 chr3 179419485 . A G 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:61:32,29:0.47541:50,0,58 chr3 179420934 . T TA 35.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:20:13,7:0.35:35,0,57 chr3 179424290 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:40:22,18:0.45:52,0,54 chr3 179426153 . A G 41.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:73:46,27:0.369863:41,0,61 chr3 179451170 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:22:0,22:1:49,34,0 chr3 179451442 . T G 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:26:9,17:0.653846:43,0,32 chr3 179581211 . C T 53 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:36:0,36:1:53,37,0 chr3 179588987 . C T 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:36:21,15:0.416667:55,0,62 chr3 179604597 . A C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:111:63,48:0.432432:47,0,53 chr3 179653753 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:25:0,25:1:48,34,0 chr3 179682034 . T C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:26:9,17:0.653846:58,0,53 chr3 179730278 . AT A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:48:0,48:1:56,46,0 chr3 179730595 . C T 49 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:18:0,18:1:49,30,0 chr3 179754886 . C T 59.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:36:0,36:1:59,41,0 chr3 179764183 . CTG C 39.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:60:1,56:0.933333:39,21,0 chr3 179808472 . A G 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:14:8,6:0.428571:49,0,56 chr3 179809671 . G GA 11.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:16:0,10:0.625:10,14,0 chr3 179874452 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:22:10,12:0.545455:56,0,63 chr3 180602873 . T A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:30:16,14:0.466667:50,0,63 chr3 180616835 . C T 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:43:29,14:0.325581:45,0,57 chr3 180631513 . G A 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:60:36,24:0.4:47,0,50 chr3 180647255 . T TA 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:42:22,16:0.380952:38,0,55 chr3 180648168 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:42:25,16:0.380952:44,0,61 chr3 180650099 . C A 20 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:62:48,14:0.225806:19,0,40 chr3 180988083 . C T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:95:68,27:0.284211:36,0,56 chr3 182828229 . C A 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:18:10,8:0.444444:44,0,53 chr3 182857843 . G T 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:15:9,6:0.4:42,0,58 chr3 182859135 . T A 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:11:4,7:0.636364:48,0,54 chr3 182869338 . G A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:21:14,7:0.333333:44,0,56 chr3 182872566 . C T 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:18:7,11:0.611111:52,0,57 chr3 182885905 . G A 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:16:11,5:0.3125:45,0,58 chr3 182896705 . T C 52.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:35:22,13:0.371429:52,0,58 chr3 182914004 . C A 45.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:38:14,24:0.631579:45,0,45 chr3 182963952 . C T 27.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:71:53,18:0.253521:27,0,53 chr3 183072461 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:31:0,31:1:52,38,0 chr3 183116012 . G A 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:58:35,23:0.396552:55,0,58 chr3 183116069 . A G 48.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:14,9:0.391304:48,0,71 chr3 183154174 . C T 63.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:138:0,138:1:63,48,0 chr3 183180132 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:90:54,36:0.4:48,0,46 chr3 183207616 . T C 40.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:13:0,13:1:40,24,0 chr3 183276824 . A G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:25:11,14:0.56:47,0,48 chr3 183276833 . A AT 41.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:36:18,18:0.5:41,0,43 chr3 183276839 . TC T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:24,20:0.454545:50,0,58 chr3 183276956 . C T 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:65:38,27:0.415385:50,0,53 chr3 183276963 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:61:35,26:0.42623:54,0,54 chr3 183309754 . T G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:81:38,43:0.530864:49,0,52 chr3 183310868 . G A 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:20:13,7:0.35:46,0,62 chr3 183338753 . A C 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:11:6,5:0.454545:40,0,64 chr3 183428052 . AG A 30.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:79:54,25:0.316456:30,0,53 chr3 183428645 . C G 44.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:17:9,8:0.470588:44,0,46 chr3 183492477 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:52:24,27:0.519231:50,0,54 chr3 183494118 . A G 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:101:0,101:1:60,43,0 chr3 183499856 . AG A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:26:11,15:0.576923:43,0,53 chr3 183508284 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:97:44,53:0.546392:55,0,53 chr3 183508398 . C T 57.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:56:29,27:0.482143:57,0,65 chr3 183508425 . A G 51.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:46:27,19:0.413043:51,0,69 chr3 183636220 . G A 46.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:33:17,15:0.454545:46,0,56 chr3 183643468 . T C 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:22:16,6:0.272727:35,0,61 chr3 183650428 . A T 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:92:52,39:0.423913:49,0,56 chr3 183651103 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:98:56,42:0.428571:47,0,57 chr3 183715195 . C T 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:24:0,24:1:55,38,0 chr3 183807986 . C A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:15,19:0.558824:49,0,52 chr3 183826713 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:95:36,59:0.621053:54,0,45 chr3 183840614 . C G 37.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:34:26,8:0.235294:37,0,54 chr3 183842407 . A G 24.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:83:57,26:0.313253:24,0,43 chr3 183868095 . A G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:30:18,12:0.4:44,0,58 chr3 183927874 . C T 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:24:12,12:0.5:49,0,51 chr3 183942797 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:103:61,41:0.398058:49,0,55 chr3 183947274 . G C 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:24:0,24:1:52,41,0 chr3 183967746 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:36:0,36:1:54,40,0 chr3 183978599 . G A 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:58:36,22:0.37931:39,0,49 chr3 183978614 . A G 58.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:42:0,42:1:58,51,0 chr3 183982423 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:27:16,11:0.407407:40,0,56 chr3 184035989 . G A 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:54:24,30:0.555556:55,0,49 chr3 184036506 . G C 33.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:91:62,29:0.318681:33,0,46 chr3 184038034 . G A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:38:0,38:1:54,43,0 chr3 184038638 . T C 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:54:0,54:1:54,43,0 chr3 184038914 . G A 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:100:0,100:1:54,41,0 chr3 184038992 . A C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:25:0,25:1:50,33,0 chr3 184039020 . G A 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:17:22:1,21:0.954545:53,16,0 chr3 184039025 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:22:0,22:1:49,42,0 chr3 184054726 . G A 42.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:61:37,24:0.393443:42,0,50 chr3 184056974 . C A 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:79:49,30:0.379747:32,0,47 chr3 184057084 . G GA 45.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:21:0,21:1:45,30,0 chr3 184060131 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:36:16,20:0.555556:51,0,50 chr3 184060222 . G C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:102:54,48:0.470588:50,0,51 chr3 184100628 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:58:30,28:0.482759:52,0,52 chr3 184104910 . C T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:85:55,29:0.341176:39,0,54 chr3 184105788 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:94:0,94:1:57,50,0 chr3 184143455 . A G 48.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:66:35,31:0.469697:48,0,55 chr3 184174762 . T TG 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:40:28,12:0.3:38,0,52 chr3 184186261 . A G 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:91:42,49:0.538462:46,0,52 chr3 184257577 . C T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:80:0,80:1:58,47,0 chr3 184276748 . A G 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:15:0,15:1:54,34,0 chr3 184278066 . G A 55.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:35:0,35:1:55,40,0 chr3 184278280 . C T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:51:0,51:1:58,39,0 chr3 184292260 . G C 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,25:1:51,42,0 chr3 184301803 . T C 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:27:12,15:0.555556:52,0,56 chr3 184319745 . A G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:65:0,65:1:53,39,0 chr3 184321878 . A G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:65:0,65:1:55,42,0 chr3 184328011 . A G 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:118:0,117:0.991525:62,51,0 chr3 184331708 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:84:34,50:0.595238:54,0,48 chr3 184353275 . G C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:80:44,36:0.45:46,0,51 chr3 184357259 . A G 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:104:0,104:1:61,43,0 chr3 184372478 . C T 57 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:84:0,84:1:57,41,0 chr3 184376395 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:23:0,23:1:50,38,0 chr3 184380405 . A C 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:16:0,16:1:42,32,0 chr3 184382550 . G A 60.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:29:0,29:1:60,42,0 chr3 184383173 . G GT 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:48:3,45:0.9375:49,36,0 chr3 184384608 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:121:70,51:0.421488:41,0,51 chr3 184386115 . A C 56.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:69:0,69:1:56,43,0 chr3 184426797 . A G 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:112:48,64:0.571429:56,0,49 chr3 184426858 . G A 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:122:88,34:0.278689:28,0,49 chr3 184572977 . C T 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:122:59,63:0.516393:50,0,56 chr3 184711345 . A ATCC 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:78:32,42:0.538462:49,0,53 chr3 184832713 . A G 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:20:0,20:1:56,41,0 chr3 184855767 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:48:0,48:1:55,45,0 chr3 184929625 . T C 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:41:0,41:1:55,35,0 chr3 184936378 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:19:0,19:1:53,41,0 chr3 184957359 . CTTTTA C 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:25:15,10:0.4:44,0,67 chr3 184957571 . T C 39.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:12:5:0,5:1:39,12,0 chr3 184964426 . T C 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:12:5,7:0.583333:49,0,55 chr3 184982568 . A C 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:51:32,19:0.372549:47,0,56 chr3 184982638 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:43:25,18:0.418605:50,0,64 chr3 185048461 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:67:0,66:0.985075:53,44,0 chr3 185048462 . C T 54.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:67:0,67:1:54,43,0 chr3 185048604 . G A 61.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:40:0,40:1:61,38,0 chr3 185083005 . T G 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:64:36,28:0.4375:46,0,56 chr3 185192345 . G T 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:70:46,24:0.342857:37,0,54 chr3 185291584 . A AT 52.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:23:11,12:0.521739:52,0,50 chr3 185328978 . T A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:33:0,33:1:54,44,0 chr3 185329187 . T C 20.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:46:35,11:0.23913:20,0,46 chr3 185437642 . C CT 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:22:5,15:0.681818:49,33,0 chr3 185590091 . A T 36.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:9:6,3:0.333333:36,0,52 chr3 185609340 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:30:12,18:0.6:48,0,59 chr3 185613377 . C A 19.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:59:47,12:0.20339:19,0,41 chr3 185657237 . A G 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:48:22,26:0.541667:54,0,57 chr3 185925666 . A G 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:8:4,4:0.5:40,0,45 chr3 186164854 . C G 58.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:42:0,42:1:58,46,0 chr3 186272307 . C T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:36:0,36:1:57,38,0 chr3 186288777 . T C 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:72:52,20:0.277778:38,0,54 chr3 186288829 . G C 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:59:45,14:0.237288:29,0,48 chr3 186546426 . C T 53.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:25:0,25:1:53,40,0 chr3 186546798 . T G 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:52:24,28:0.538462:47,0,43 chr3 186555114 . G A 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:21:13,8:0.380952:49,0,54 chr3 186558463 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:60:31,29:0.483333:52,0,48 chr3 186558604 . C T 55.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:19:7,12:0.631579:55,0,58 chr3 186577628 . A AT 28.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:46:7,34:0.73913:26,0,1 chr3 186582708 . C G 53.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:34,28:0.451613:53,0,54 chr3 186584394 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:30:16,14:0.466667:50,0,59 chr3 186584602 . A ATT 3.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:60:44,7:0.116667:0,0,24 chr3 186584603 . G T 15.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:15:60:16,44:0.733333:15,0,27 chr3 186620636 . A C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:114:55,59:0.517544:40,0,46 chr3 186640448 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:42:19,23:0.547619:57,0,51 chr3 186640577 . A C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:74:0,74:1:57,46,0 chr3 186652544 . G T 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:37:0,37:1:58,40,0 chr3 186652561 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:44:1,43:0.977273:57,43,0 chr3 186666226 . C T 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:39:25,14:0.358974:38,0,51 chr3 186671770 . T C 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:82:35,47:0.573171:45,0,53 chr3 186672838 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:64:0,64:1:50,35,0 chr3 186677647 . C T 53.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:61:18,43:0.704918:53,0,42 chr3 186677783 . A T 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:67:0,67:1:57,43,0 chr3 186722454 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:95:61,34:0.357895:52,0,54 chr3 186725044 . G C 40.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:25:17,8:0.32:40,0,50 chr3 186725229 . T C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:95:50,44:0.463158:47,0,49 chr3 186790133 . C T 56.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:33:11,22:0.666667:56,0,50 chr3 186791728 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:48:0,48:1:52,38,0 chr3 187199963 . C G 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:137:67,70:0.510949:45,0,49 chr3 187221168 . C T 58 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:39:16,23:0.589744:57,0,61 chr3 187236144 . C A 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:96:44,52:0.541667:51,0,52 chr3 187236405 . G A 52.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:98:47,51:0.520408:52,0,50 chr3 187236497 . A G 60.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:78:0,78:1:60,55,0 chr3 187236536 . G A 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:79:50,29:0.367089:38,0,49 chr3 187370868 . C T 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:71:32,39:0.549296:47,0,50 chr3 187371024 . C T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:97:51,46:0.474227:44,0,60 chr3 187371115 . C A 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:87:48,39:0.448276:55,0,59 chr3 187371138 . G A 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:82:0,82:1:62,52,0 chr3 187371243 . C A 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:78:48,30:0.384615:32,0,48 chr3 187670108 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:41:20,21:0.512195:52,0,62 chr3 187670123 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:54:24,30:0.555556:57,0,67 chr3 187698465 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:32:17,15:0.46875:51,0,57 chr3 187698846 . C A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:60:25,35:0.583333:45,0,43 chr3 187698931 . T C 25.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:36:8,28:0.777778:25,0,9 chr3 187698969 . A G 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:41:29,11:0.268293:42,0,65 chr3 187698970 . T TA 29.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:41:29,12:0.292683:29,0,56 chr3 187698974 . CA C 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:43:30,13:0.302326:34,0,56 chr3 187728423 . C T 47.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:125:70,55:0.44:47,0,51 chr3 187729244 . G A 46.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:66:36,29:0.439394:46,0,52 chr3 187729778 . G A 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:106:50,56:0.528302:51,0,53 chr3 187731681 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:24:11,13:0.541667:50,0,53 chr3 188609673 . C T 39.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:114:75,39:0.342105:39,0,52 chr3 188609767 . T C 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:62:41,21:0.33871:41,0,55 chr3 188746460 . G GT 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:64:35,29:0.453125:49,0,57 chr3 189315503 . C G 54.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:31:0,31:1:54,43,0 chr3 189320859 . T C 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:26:13,13:0.5:46,0,54 chr3 189869302 . A G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:82:42,40:0.487805:56,0,53 chr3 189873035 . G C 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:44:24,20:0.454545:51,0,54 chr3 189886360 . T G 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:85:46,39:0.458824:51,0,55 chr3 189886371 . T C 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:91:51,40:0.43956:57,0,48 chr3 189970780 . C A 43.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:14:7,7:0.5:43,0,52 chr3 189973037 . A AC 28.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:127:80,29:0.228346:28,0,43 chr3 189973072 . T A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:98:0,98:1:56,51,0 chr3 189984606 . TAA T 39 PASS . GT:GQ:DP:AD:VAF:PL 1/0:12:11:0,5:0.454545:38,28,41 chr3 189984606 . TA T 39 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:11:0,6:0.545455:38,28,11 chr3 189994300 . G A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:52:0,52:1:60,58,0 chr3 189994301 . G A 59.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:52:0,52:1:59,58,0 chr3 190120204 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:47:0,47:1:56,37,0 chr3 190120229 . G T 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:68:1,67:0.985294:60,47,0 chr3 190310303 . C T 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:51:30,21:0.411765:41,0,58 chr3 190312891 . A G 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:117:64,53:0.452991:51,0,53 chr3 190564243 . T C 53 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:28:13,15:0.535714:53,0,59 chr3 190623452 . C A 55.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:21:0,21:1:55,39,0 chr3 190627309 . GT G 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:29:3,26:0.896552:54,43,0 chr3 190644431 . A T 46.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:31:13,18:0.580645:46,0,43 chr3 190648355 . T C 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:51:32,19:0.372549:39,0,49 chr3 190656067 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:51:29,22:0.431373:54,0,63 chr3 190858913 . C T 46.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:17,11:0.392857:46,0,59 chr3 190860777 . A G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:98:51,47:0.479592:49,0,46 chr3 191273595 . G A 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:0,58:1:59,44,0 chr3 191329743 . A G 50.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:104:54,50:0.480769:50,0,48 chr3 191357084 . C G 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:89:53,36:0.404494:37,0,49 chr3 191358113 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:71:39,32:0.450704:44,0,50 chr3 191369951 . A T 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:48:30,18:0.375:43,0,55 chr3 191375264 . T C 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:107:53,54:0.504673:55,0,56 chr3 191375386 . T A 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:110:65,45:0.409091:40,0,55 chr3 191375521 . A G 35.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:105:66,39:0.371429:35,0,55 chr3 191375595 . A G 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:87:63,24:0.275862:44,0,52 chr3 191379626 . G C 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:48:28,20:0.416667:49,0,55 chr3 191380119 . C T 4.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:37:31,6:0.162162:2,0,40 chr3 191380177 . T C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:38:27,10:0.263158:44,0,63 chr3 191380942 . G A 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:57:32,25:0.438596:44,0,52 chr3 191382772 . C A 31.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:42:27,15:0.357143:31,0,51 chr3 191461285 . C T 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:53:22,30:0.566038:57,0,50 chr3 191461404 . A G 42.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:42:27,15:0.357143:42,0,52 chr3 192170663 . GA G 35.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:11:4,6:0.545455:35,0,21 chr3 192335485 . G A 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:29:0,29:1:53,38,0 chr3 192402644 . C A 43 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:62:35,27:0.435484:42,0,53 chr3 192672988 . T C 40 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:83:53,30:0.361446:40,0,54 chr3 193276754 . A G 55.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:34:13,21:0.617647:55,0,48 chr3 193276968 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:69:35,34:0.492754:50,0,52 chr3 193277103 . G A 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:71:40,31:0.43662:52,0,54 chr3 193277225 . C G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:20:10,10:0.5:46,0,60 chr3 193277226 . T G 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:20:10,10:0.5:45,0,59 chr3 193299106 . T C 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:13:0,13:1:45,26,0 chr3 193314137 . C T 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:58:0,58:1:56,43,0 chr3 193319005 . G C 53.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:33:0,33:1:53,39,0 chr3 193324987 . T C 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:26:0,26:1:50,33,0 chr3 193345117 . G A 60.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:27:0,27:1:60,44,0 chr3 193354099 . CA C 37.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:27:13,11:0.407407:37,0,56 chr3 193362555 . C T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:77:28,49:0.636364:54,0,43 chr3 193362625 . C G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:115:75,40:0.347826:40,0,57 chr3 193363333 . G T 46 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:55:35,20:0.363636:45,0,48 chr3 193363417 . G A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:22:4,18:0.818182:52,0,38 chr3 193364075 . G A 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:39:23,16:0.410256:54,0,66 chr3 193364077 . T A 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:40:16,23:0.575:57,0,54 chr3 193378740 . C T 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:51:0,51:1:54,40,0 chr3 193435773 . T C 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:25:0,25:1:56,42,0 chr3 193454190 . T A 33.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:84:53,31:0.369048:33,0,47 chr3 193456993 . T C 51.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:34:17,17:0.5:51,0,59 chr3 193462721 . G T 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:22:14,7:0.318182:46,0,53 chr3 193462803 . G A 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:69:50,19:0.275362:41,0,58 chr3 193462872 . C T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:28:21,7:0.25:44,0,63 chr3 193464926 . T G 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:29:15,14:0.482759:47,0,58 chr3 193466028 . A G 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:36:0,36:1:55,39,0 chr3 193617202 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:49:29,20:0.408163:47,0,60 chr3 193618850 . T C 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:53:28,25:0.471698:49,0,54 chr3 193637285 . T C 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:39:0,39:1:48,43,0 chr3 193637313 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:35:24,11:0.314286:46,0,66 chr3 193657175 . T C 21.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:99:66,33:0.333333:21,0,46 chr3 193666414 . T A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:43:18,25:0.581395:52,0,51 chr3 193668450 . C T 47.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:34:19,15:0.441176:47,0,46 chr3 193694883 . A G 54.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:36:45:0,45:1:54,36,0 chr3 193695160 . T C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:32:0,32:1:55,40,0 chr3 193695713 . C T 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:18:0,18:1:54,33,0 chr3 193695943 . A G 56.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:33:0,33:1:56,39,0 chr3 193696692 . C T 31.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:25:18,7:0.28:31,0,53 chr3 193696944 . A G 49.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:69:45,24:0.347826:49,0,55 chr3 193696991 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:43:24,19:0.44186:54,0,66 chr3 194078325 . G C 52.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:34,29:0.460317:52,0,52 chr3 194081355 . G A 56.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:30:14,16:0.533333:56,0,63 chr3 194081407 . C T 62.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:61:91:42,49:0.538462:62,0,65 chr3 194341177 . T C 57.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:62:0,62:1:57,40,0 chr3 194342571 . T C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:70:0,70:1:58,43,0 chr3 194396726 . A G 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:93:58,35:0.376344:49,0,52 chr3 194398145 . T C 66.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:91:0,91:1:66,54,0 chr3 194427274 . G A 43.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:24:14,10:0.416667:43,0,53 chr3 194430094 . A C 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:68:47,21:0.308824:48,0,57 chr3 194438977 . A G 43.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:43:21,22:0.511628:43,0,60 chr3 194446884 . G A 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:39:20,19:0.487179:54,0,52 chr3 194455983 . C A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:19:0,19:1:47,33,0 chr3 194460014 . G T 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:19:7,12:0.631579:47,0,57 chr3 194467885 . G C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:28:21,7:0.25:46,0,55 chr3 194467919 . T C 32.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:52:43,9:0.173077:32,0,49 chr3 194468003 . C T 48.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:17,14:0.451613:48,0,62 chr3 194593103 . T C 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:73:0,73:1:58,42,0 chr3 194604253 . C A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:25:13,12:0.48:52,0,67 chr3 194604277 . A G 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:40:16,24:0.6:54,0,55 chr3 194604281 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:49:31,18:0.367347:50,0,81 chr3 194610902 . C T 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:62:34,28:0.451613:53,0,55 chr3 194617172 . T C 58.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:82:0,82:1:58,48,0 chr3 194617694 . C T 51.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:92:50,42:0.456522:51,0,47 chr3 194617809 . A T 51.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:36:17,19:0.527778:51,0,64 chr3 194628449 . C T 34 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:39:28,10:0.25641:33,0,49 chr3 194633043 . C CCCGCCCGACAG 52.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:42:0,33:0.785714:52,44,0 chr3 194633146 . G T 28.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:159:104,55:0.345912:28,0,44 chr3 194653103 . T C 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:92:60,32:0.347826:48,0,56 chr3 194653104 . G A 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:91:59,31:0.340659:49,0,58 chr3 194658917 . T TC 49.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:13:4,9:0.692308:49,0,58 chr3 194659176 . TA T 38.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:6:1,5:0.833333:38,0,34 chr3 194660801 . A G 39.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:67:43,24:0.358209:39,0,56 chr3 194666571 . C T 28.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:32:24,8:0.25:28,0,47 chr3 194669984 . C A 37.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:18:12,6:0.333333:37,0,50 chr3 194670140 . G GA 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:23:9,14:0.608696:51,0,56 chr3 194687975 . A G 57.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:20:0,20:1:57,51,0 chr3 194687987 . G C 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:22:9,13:0.590909:53,0,52 chr3 195122056 . C G 33 PASS . GT:GQ:DP:AD:VAF:PL 0/1:33:138:87,51:0.369565:32,0,50 chr3 195122148 . A G 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:164:102,62:0.378049:46,0,58 chr3 195122182 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:103:68,34:0.330097:48,0,56 chr3 195518974 . T C 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:10:0,10:1:46,31,0 chr3 195519008 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:21:0,21:1:49,43,0 chr3 195573805 . A G 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:16:0,16:1:48,29,0 chr3 195721015 . G C 6.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:615:425,189:0.307317:5,0,45 chr3 195725009 . A G 29.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:180:0,179:0.994444:29,39,0 chr3 195725010 . G A 34.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:178:0,178:1:34,39,0 chr3 195725533 . C T 8.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:2:0,2:1:7,13,0 chr3 195725797 . C G 21.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:82:45,36:0.439024:21,0,23 chr3 195725818 . C T 23.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:68:27,41:0.602941:22,6,0 chr3 195725899 . G A 41.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:56:25,31:0.553571:41,0,36 chr3 195725928 . C T 10.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:78:23,55:0.705128:9,0,14 chr3 195725999 . G A 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:170:148,22:0.129412:35,0,54 chr3 195726001 . A C 19.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:176:151,24:0.136364:19,0,46 chr3 195726002 . G A 4.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:176:151,24:0.136364:3,0,35 chr3 195726080 . G C 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:223:81,141:0.632287:50,0,40 chr3 195726193 . T G 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:192:0,192:1:54,39,0 chr3 195750842 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:36:0,36:1:50,54,0 chr3 195750844 . C A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:49:0,49:1:50,55,0 chr3 195750920 . G A 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:211:0,210:0.995261:56,47,0 chr3 195751141 . G C 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:144:1,140:0.972222:53,43,0 chr3 195752385 . T C 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:156:0,156:1:61,47,0 chr3 195757373 . G A 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:77:0,77:1:62,46,0 chr3 195760866 . A G 65.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:108:0,107:0.990741:65,54,0 chr3 195762138 . C A 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:231:0,231:1:58,46,0 chr3 195762196 . C G 37 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:214:130,83:0.38785:36,0,49 chr3 195763413 . T C 52.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:66:0,66:1:52,38,0 chr3 195765156 . T C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:89:0,87:0.977528:57,46,0 chr3 195769045 . G C 64.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:160:0,160:1:64,48,0 chr3 195770303 . C G 55.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:165:0,165:1:55,40,0 chr3 195774278 . C T 44.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:78:43,35:0.448718:44,0,47 chr3 195778376 . G T 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:331:207,124:0.374622:36,0,52 chr3 195778793 . G A 52.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:23:0,23:1:52,37,0 chr3 195778917 . G C 12.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:41:29,11:0.268293:12,0,42 chr3 195779432 . G T 46.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:13:0,13:1:46,29,0 chr3 195779550 . A G 12.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:19:12,7:0.368421:12,0,33 chr3 195779748 . T C 11.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:18:15,3:0.166667:10,0,25 chr3 195779781 . A G 32.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:14:0,14:1:32,24,0 chr3 195779790 . G C 28 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:11:0,11:1:27,10,0 chr3 195779805 . G A 46.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:14:0,14:1:46,40,0 chr3 195779882 . G C 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:23:0,23:1:49,39,0 chr3 195779904 . G A 16.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:27:23,4:0.148148:16,0,51 chr3 195780044 . G T 4.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:16:12,3:0.1875:2,0,16 chr3 195780069 . G C 4.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:10:5,5:0.5:1,0,19 chr3 195780075 . T G 12.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:6:3,3:0.5:10,0,4 chr3 195780084 . T C 23.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:6:3,3:0.5:22,0,7 chr3 195780191 . C T 30 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:52:26,26:0.5:29,6,0 chr3 195780236 . C T 13.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:38:29,9:0.236842:12,0,48 chr3 195780295 . A G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:32:0,32:1:40,43,0 chr3 195780322 . G A 10.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:25:17,8:0.32:9,0,28 chr3 195780355 . A G 28.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:25:2,23:0.92:26,3,0 chr3 195780371 . C A 5.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:28:21,7:0.25:3,0,36 chr3 195780494 . G A 23.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:34:3,31:0.911765:23,32,0 chr3 195780501 . C G 35.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:30:2,28:0.933333:35,25,0 chr3 195780508 . G C 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:25:10,15:0.6:36,0,43 chr3 195780514 . G A 31.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:20:3,17:0.85:31,15,0 chr3 195780527 . C T 11.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:18:6,12:0.666667:11,19,0 chr3 195780528 . C G 25.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:18:3,13:0.722222:25,23,0 chr3 195780535 . G A 26.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:19:7,12:0.631579:26,13,0 chr3 195780541 . C G 14 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:16:5,10:0.625:13,40,0 chr3 195780720 . C T 25.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:60:24,26:0.433333:25,0,24 chr3 195780831 . G C 22.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:19:13,5:0.263158:22,30,0 chr3 195780846 . G T 8.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:6:25:13,12:0.48:7,0,10 chr3 195780975 . C G 4.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:4:69:25,44:0.637681:2,0,30 chr3 195780987 . G T 8.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:63:20,43:0.68254:7,0,40 chr3 195781516 . G C 8.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:44:37,6:0.136364:8,0,42 chr3 195781522 . A G 3.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:41:29,12:0.292683:0,0,44 chr3 195781619 . C A 15.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:8:1,7:0.875:15,18,0 chr3 195781628 . C T 27.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:7:0,7:1:27,16,0 chr3 195781639 . A G 25.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:5:0,5:1:25,37,0 chr3 195781666 . A G 24 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:3:0,3:1:23,21,0 chr3 195781795 . G GCC 13 PASS . GT:GQ:DP:AD:VAF:PL 1/1:9:17:2,14:0.823529:12,10,0 chr3 195781797 . GTC G 7.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:19:2,17:0.894737:4,0,1 chr3 195781820 . T C 11.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:22:2,20:0.909091:10,23,0 chr3 195781831 . G A 11.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:22:2,20:0.909091:10,7,0 chr3 195781838 . A G 13.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:13:25:2,23:0.92:13,18,0 chr3 195781839 . G A 14.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:25:2,23:0.92:13,11,0 chr3 195781845 . A G 3.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:30:1,29:0.966667:0,18,0 chr3 195781851 . G T 24.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:33:1,30:0.909091:24,33,0 chr3 195782115 . G A 37.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:56:9,47:0.839286:37,18,0 chr3 195782558 . A G 43.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:26:0,26:1:43,29,0 chr3 195782572 . A G 10.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:26:17,9:0.346154:10,0,43 chr3 195782605 . A G 42.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:31:15,15:0.483871:42,0,48 chr3 195782913 . C T 6.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:42:27,14:0.333333:5,0,52 chr3 195782949 . A G 38.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:35:1,32:0.914286:38,30,0 chr3 195783084 . A C 34.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:35:10,24:0.685714:33,4,0 chr3 195783093 . A G 41.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:38:0,38:1:41,32,0 chr3 195783103 . A G 17.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:35:26,9:0.257143:17,0,53 chr3 195783285 . G A 29.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:44:30,13:0.295455:29,0,45 chr3 195783346 . A G 23.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:24:0,24:1:23,29,0 chr3 195783740 . G T 4.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:2:4:1,3:0.75:0,2,0 chr3 195783784 . T G 4.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:15:11,4:0.266667:2,0,6 chr3 195783836 . T G 4.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:22:9,13:0.590909:2,8,0 chr3 195783847 . G T 18.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:20:9,11:0.55:17,7,0 chr3 195783861 . G A 27.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:19:9,10:0.526316:26,0,10 chr3 195783874 . G A 4.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:20:7,13:0.65:2,0,32 chr3 195783878 . C A 16.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:25:10,14:0.56:16,0,36 chr3 195783891 . G A 36.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:21:13,8:0.380952:36,0,20 chr3 195783902 . A G 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:22:14,8:0.363636:38,0,60 chr3 195783915 . T G 30.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:28:18,10:0.357143:30,0,41 chr3 195783956 . C T 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:41:25,16:0.390244:40,0,46 chr3 195784271 . T C 25.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:65:52,13:0.2:25,0,48 chr3 195784460 . A G 37.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:60:0,59:0.983333:37,33,0 chr3 195784541 . T A 14.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:40:34,5:0.125:14,0,31 chr3 195784652 . C G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:18:0,18:1:45,45,0 chr3 195784654 . T C 43.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:17:1,16:0.941176:43,35,0 chr3 195784655 . C T 44.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:32:18:0,16:0.888889:44,32,0 chr3 195784676 . C T 13.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:24:17,7:0.291667:13,0,18 chr3 195784685 . T A 26.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:25:17,8:0.32:26,0,33 chr3 195784704 . A G 28.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:33:17,16:0.484848:28,0,46 chr3 195784719 . A G 39.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:35:0,35:1:39,47,0 chr3 195784797 . G A 13.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:56:43,13:0.232143:13,0,40 chr3 195784909 . G A 19.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:53:43,10:0.188679:19,0,45 chr3 195784943 . T C 31.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:61:20,41:0.672131:31,0,19 chr3 195785088 . G A 15.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:41:26,15:0.365854:14,0,13 chr3 195785108 . C T 12.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:31:27,4:0.129032:11,0,14 chr3 195785122 . A G 21.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:33:15,18:0.545455:21,0,17 chr3 195785133 . T G 33 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:29:0,28:0.965517:32,36,0 chr3 195785171 . T C 39.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:49:0,49:1:39,47,0 chr3 195785232 . G A 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:57:40,17:0.298246:36,0,56 chr3 195785236 . T A 51.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:58:0,57:0.982759:51,52,0 chr3 195785315 . T C 54.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:60:0,59:0.983333:54,58,0 chr3 195785341 . G T 27.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:28:61:47,13:0.213115:27,0,56 chr3 195785374 . T C 52.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:59:0,59:1:52,58,0 chr3 195785416 . G A 17 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:69:60,9:0.130435:16,0,39 chr3 195785472 . G A 11.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:12:72:61,11:0.152778:11,0,37 chr3 195785502 . G GGAT 40.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:58:46,11:0.189655:40,0,58 chr3 195785609 . A G 24.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:25:67:52,15:0.223881:24,0,56 chr3 195785696 . G A 4.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:76:64,12:0.157895:2,0,28 chr3 195786231 . A G 30.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:72:52,20:0.277778:30,0,48 chr3 195786474 . A C 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:51:28,22:0.431373:41,0,44 chr3 195786549 . G A 11.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:47:31,16:0.340426:10,0,43 chr3 195786809 . A T 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:38:21,16:0.421053:43,0,32 chr3 195787488 . A G 13.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:2:0,2:1:13,12,0 chr3 195787533 . G A 3.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:3:3:1,2:0.666667:0,20,0 chr3 195788077 . G A 28.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:3:0,3:1:28,14,0 chr3 195788132 . T C 28.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:4:0,4:1:28,18,0 chr3 195788137 . C G 13.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:7:7:2,5:0.714286:12,7,0 chr3 195788444 . A G 29.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:28:24:0,23:0.958333:29,32,0 chr3 195788467 . A G 18.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:18:29:21,8:0.275862:18,0,53 chr3 195788469 . G A 10.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:29:8,21:0.724138:9,0,25 chr3 195788540 . G T 6.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:7:22:16,6:0.272727:5,0,32 chr3 195788542 . C T 7.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:8:21:14,6:0.285714:6,0,33 chr3 195788543 . T C 13.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:26:15,6:0.230769:13,0,33 chr3 195788723 . C G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:182:0,182:1:57,51,0 chr3 195788746 . G C 60 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:103:0,102:0.990291:59,45,0 chr3 195789759 . G T 62.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:159:1,158:0.993711:62,49,0 chr3 195790007 . T C 60.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:131:0,131:1:60,42,0 chr3 195790387 . G A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:67:0,67:1:61,49,0 chr3 195790450 . G A 66 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:79:0,79:1:66,53,0 chr3 195790682 . A C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:112:0,112:1:56,40,0 chr3 195791241 . T TGTCTCCTGCGTAACA 51.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:191:3,122:0.638743:51,46,0 chr3 195791459 . C G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:130:0,130:1:53,47,0 chr3 195815885 . A G 15.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:15:2:0,2:1:15,20,0 chr3 195816281 . A G 30.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:18:43:9,32:0.744186:30,18,0 chr3 195816487 . T C 11 PASS . GT:GQ:DP:AD:VAF:PL 1/1:10:119:41,78:0.655462:10,16,0 chr3 195816584 . C T 22.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:139:85,54:0.388489:22,0,43 chr3 195817073 . C A 40.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:87:11,72:0.827586:40,25,0 chr3 195817328 . T A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:65:12,53:0.815385:41,45,0 chr3 195817362 . A C 22.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:6:79:37,41:0.518987:21,5,0 chr3 195817384 . A G 7.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:4:90:68,21:0.233333:5,4,0 chr3 195817427 . C T 38.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:117:9,107:0.91453:38,37,0 chr3 195867934 . A G 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:35:11,24:0.685714:50,0,43 chr3 195868079 . G A 44.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:139:81,58:0.417266:44,0,49 chr3 195876763 . G A 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:43:0,43:1:57,45,0 chr3 195876781 . T G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:27:12,15:0.555556:55,0,67 chr3 195876795 . G A 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:21:10,11:0.52381:51,0,56 chr3 195892383 . A G 53.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:42:18,24:0.571429:53,0,48 chr3 195892678 . A AGAG 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:17:10,7:0.411765:50,0,63 chr3 195892705 . G A 57.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:13:6,7:0.538462:57,0,66 chr3 196000115 . C A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:61:34,26:0.42623:48,0,50 chr3 196000498 . C G 47.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:86:43,43:0.5:47,0,53 chr3 196052284 . C T 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:36:21,14:0.388889:38,0,56 chr3 196055305 . C T 55.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:113:62,51:0.451327:55,0,58 chr3 196055306 . A G 55.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:113:61,52:0.460177:55,0,57 chr3 196055313 . C T 63.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:109:58,51:0.46789:63,0,57 chr3 196062505 . C T 55.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:22:13,9:0.409091:55,0,68 chr3 196062543 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:26:13,13:0.5:53,0,60 chr3 196062557 . C A 43.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:31:1,30:0.967742:43,42,0 chr3 196062837 . G T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:74:35,39:0.527027:49,0,55 chr3 196071387 . T C 56.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:55:0,55:1:56,43,0 chr3 196077150 . G A 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:38:22,16:0.421053:38,0,52 chr3 196077221 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:9:3,6:0.666667:45,0,48 chr3 196228891 . G A 45 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:91:53,38:0.417582:44,0,57 chr3 196472333 . G T 38.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:84:54,30:0.357143:38,0,49 chr3 196483937 . T C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:16:0,16:1:54,37,0 chr3 196488580 . CA C 58.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:31:2,26:0.83871:58,45,0 chr3 196508139 . C T 22.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:23:90:61,29:0.322222:22,0,47 chr3 196554337 . T C 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:57:32,25:0.438596:43,0,47 chr3 196639828 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:55:26,29:0.527273:51,0,55 chr3 196661545 . C T 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:110:57,53:0.481818:51,0,59 chr3 196708663 . T C 60.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:44:0,44:1:60,45,0 chr3 196711955 . G T 44.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:68:42,26:0.382353:44,0,55 chr3 196716932 . T C 44.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:27:0,27:1:44,37,0 chr3 196716955 . A G 61.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:21:0,21:1:61,52,0 chr3 196739928 . T C 49.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:32:15,17:0.53125:49,0,54 chr3 196782769 . C T 42 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:44:23,21:0.477273:42,0,56 chr3 196820575 . G C 25.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:15:11,4:0.266667:25,0,42 chr3 196827149 . C T 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:20:0,20:1:50,35,0 chr3 196930799 . CT C 55.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:42:1,41:0.97619:55,43,0 chr3 196943041 . C T 49.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:13:0,13:1:49,31,0 chr3 196947878 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:57:0,57:1:50,42,0 chr3 196948008 . A G 57.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:67:0,67:1:57,48,0 chr3 196948045 . A C 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:71:0,71:1:62,50,0 chr3 196948101 . C T 53.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:62:0,62:1:53,39,0 chr3 196948102 . T C 52.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:63:0,63:1:52,34,0 chr3 196965846 . T G 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:103:0,103:1:58,50,0 chr3 196965900 . T C 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:38:0,38:1:62,40,0 chr3 197015419 . T C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:163:94,69:0.423313:49,0,57 chr3 197015524 . G A 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:39:21,18:0.461538:39,0,52 chr3 197022927 . T G 21.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:5:3,2:0.4:21,0,41 chr3 197023145 . A G 52.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:24:10:0,10:1:52,23,0 chr3 197051567 . C T 56.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:46:0,46:1:56,41,0 chr3 197142817 . A G 42.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:12:0,12:1:42,30,0 chr3 197522822 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:51:27,23:0.45098:45,0,60 chr3 197637866 . A G 9.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:10:85:72,13:0.152941:9,0,41 chr3 197637973 . T C 20.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:21:68:56,12:0.176471:20,0,39 chr3 197756408 . A G 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:17:10,7:0.411765:49,0,66 chr3 197768463 . G A 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:30:16,14:0.466667:54,0,64 chr3 197770113 . A G 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:35:21,14:0.4:53,0,64 chr3 197773523 . T TTTTG 38.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:24:11,12:0.5:38,0,54 chr3 197817329 . C CGTGTGTGTGTGT 11.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:11:34:13,16:0.470588:11,0,23 chr3 197817330 . A ATTTTGTGTGTGTGTGCG 13.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:13:31:14,13:0.419355:13,0,38 chr3 197830764 . C T 49.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:21:11,10:0.47619:49,0,54 chr3 197839383 . T C 28.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:8:3:0,3:1:27,7,0 chr3 197880657 . A G 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:62:38,24:0.387097:46,0,47 chr4 59457 . A G 15.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:16:59:51,8:0.135593:15,0,38 chr4 131416 . G C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:11:0,11:1:47,19,0 chr4 271663 . G C 27.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:15:11,4:0.266667:27,0,46 chr4 272072 . GACCT G 26.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:15:12,3:0.2:26,0,63 chr4 305292 . C G 39.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:20:10,10:0.5:39,0,53 chr4 337951 . G T 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:68:0,68:1:51,49,0 chr4 383099 . C A 61.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:88:1,87:0.988636:61,51,0 chr4 442533 . T A 44.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:46:25,21:0.456522:44,0,55 chr4 444042 . C T 45.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:12:0,12:1:45,26,0 chr4 505779 . C T 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:100:51,49:0.49:51,0,53 chr4 507558 . G A 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:171:94,77:0.450292:47,0,54 chr4 521700 . G A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:147:86,61:0.414966:48,0,58 chr4 523409 . G A 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:128:76,51:0.398438:45,0,51 chr4 523587 . T C 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:95:58,37:0.389474:42,0,52 chr4 523672 . T C 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:69:38,31:0.449275:50,0,62 chr4 523833 . C T 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:118:56,62:0.525424:50,0,53 chr4 523922 . G T 40.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:88:52,36:0.409091:40,0,51 chr4 527279 . A T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:70:0,70:1:58,44,0 chr4 533888 . T C 41.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:117:69,48:0.410256:41,0,50 chr4 536426 . G A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:31:15,16:0.516129:50,0,60 chr4 536427 . C A 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:31:15,16:0.516129:47,0,60 chr4 539212 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:128:78,50:0.390625:47,0,55 chr4 588785 . G A 26.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:26:82:62,20:0.243902:26,0,53 chr4 625749 . G A 57.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:55:78:33,45:0.576923:57,0,58 chr4 625769 . G A 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:70:32,38:0.542857:51,0,65 chr4 625999 . C G 56 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:68:38,30:0.441176:56,0,57 chr4 626010 . C T 58.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:76:42,33:0.434211:58,0,60 chr4 654854 . G A 47.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:30:126:0,126:1:47,29,0 chr4 654920 . G C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:59:30,29:0.491525:57,0,60 chr4 662092 . C G 44 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:127:70,57:0.448819:43,0,51 chr4 664068 . CT C 47 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:15,11:0.423077:46,0,58 chr4 670119 . A G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:76:43,33:0.434211:45,0,58 chr4 670239 . ATT A 6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:32:3,5:0.15625:1,0,49 chr4 670239 . A AT 6 PASS . GT:GQ:DP:AD:VAF:PL 0/0:2:32:3,8:0.25:1,1,31 chr4 674550 . G T 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:14,16:0.533333:51,0,53 chr4 680547 . A C 52 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:66:43,23:0.348485:51,0,61 chr4 680584 . A T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:47:31,16:0.340426:48,0,60 chr4 680597 . C CGG 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:35:9,26:0.742857:52,0,51 chr4 681857 . G A 41.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:15:8,6:0.4:41,0,51 chr4 682210 . T C 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:63:34,28:0.444444:51,0,55 chr4 684694 . A C 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:62:29,33:0.532258:49,0,49 chr4 758733 . T G 18.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:87:57,29:0.333333:18,0,32 chr4 758812 . T C 18.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:17:111:85,25:0.225225:18,0,24 chr4 758913 . G C 24.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:22:7:1,6:0.857143:24,26,0 chr4 759231 . G C 29.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:29:87:0,85:0.977012:29,36,0 chr4 759337 . G C 14.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:8:0,8:1:13,24,0 chr4 760019 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:83:0,83:1:50,36,0 chr4 769175 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:35:0,35:1:57,44,0 chr4 769252 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:51:21,30:0.588235:52,0,45 chr4 786498 . C G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:31:0,31:1:49,38,0 chr4 849907 . A G 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:68:0,67:0.985294:56,38,0 chr4 851984 . T C 53.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:70:0,70:1:53,40,0 chr4 865086 . T TC 53.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:19:7,12:0.631579:53,0,51 chr4 865153 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:43:0,42:0.976744:51,41,0 chr4 866358 . A G 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:39:22,16:0.410256:50,0,59 chr4 866404 . A G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:107:55,51:0.476636:45,0,65 chr4 877836 . C T 46.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:25:12,13:0.52:46,0,56 chr4 884131 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:30:17,13:0.433333:49,0,57 chr4 948403 . G A 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:32:14,18:0.5625:50,0,51 chr4 952438 . T C 48.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:148:96,50:0.337838:48,0,48 chr4 953186 . G A 54.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:97:49,48:0.494845:54,0,53 chr4 957995 . G A 56.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:83:40,43:0.518072:56,0,55 chr4 962480 . C T 49.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:219:137,81:0.369863:49,0,57 chr4 965471 . C T 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:27:16,11:0.407407:42,0,58 chr4 966293 . G A 49.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:44:0,44:1:49,34,0 chr4 967006 . G A 51 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:111:55,56:0.504505:51,0,53 chr4 967018 . C A 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:112:57,55:0.491071:52,0,60 chr4 967403 . A G 48.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:32:13,19:0.59375:48,0,52 chr4 968004 . C T 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:72:25,47:0.652778:50,0,49 chr4 970958 . C A 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:22:9,13:0.590909:50,0,52 chr4 973318 . G A 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:38:18,20:0.526316:53,0,58 chr4 987183 . T G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:54:0,54:1:45,44,0 chr4 993386 . C T 44.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:33:21,12:0.363636:44,0,56 chr4 1001517 . T C 46.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:197:117,80:0.406091:46,0,50 chr4 1001634 . G C 45.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:131:80,50:0.381679:45,0,56 chr4 1001671 . C T 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:131:79,52:0.396947:56,0,63 chr4 1002131 . G C 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:71:45,26:0.366197:40,0,56 chr4 1002209 . A G 41.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:65:48,13:0.2:41,0,57 chr4 1002224 . G C 22.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:22:69:54,13:0.188406:22,0,51 chr4 1002377 . G A 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:116:59,57:0.491379:47,0,60 chr4 1002460 . G C 54.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:85:47,37:0.435294:54,0,60 chr4 1002715 . C CA 51.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:71:37,33:0.464789:51,0,50 chr4 1002772 . C G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:69:32,36:0.521739:51,0,64 chr4 1002902 . G A 50.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:113:58,55:0.486726:50,0,46 chr4 1002980 . T C 54.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:88:55,33:0.375:54,0,58 chr4 1003100 . C T 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:135:67,67:0.496296:54,0,55 chr4 1003205 . G C 35.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:88:44,41:0.465909:35,0,40 chr4 1003307 . T C 47.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:67:38,29:0.432836:47,0,57 chr4 1003697 . T G 45.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:56:30,26:0.464286:45,0,46 chr4 1003925 . C A 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:107:53,54:0.504673:54,0,49 chr4 1010000 . G C 58 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:56:0,56:1:58,39,0 chr4 1011075 . T G 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:65:44,21:0.323077:53,0,63 chr4 1011076 . T C 54.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:68:46,22:0.323529:54,0,60 chr4 1012132 . GC G 40.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:31:17:0,17:1:40,31,0 chr4 1012545 . G A 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:94:0,94:1:57,41,0 chr4 1022491 . G A 50.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:58:28,29:0.5:50,0,48 chr4 1056865 . G A 56.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:68:0,68:1:56,43,0 chr4 1058290 . A T 50.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:22:0,22:1:50,50,0 chr4 1058312 . G A 51.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:33:19,14:0.424242:51,0,59 chr4 1058337 . T C 54.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:41:1,40:0.97561:54,40,0 chr4 1058378 . A C 51.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:44:2,42:0.954545:51,44,0 chr4 1058418 . T C 56.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:21:0,21:1:56,45,0 chr4 1058424 . G A 69 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:22:0,22:1:68,50,0 chr4 1093477 . T C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:17:0,17:1:54,38,0 chr4 1093539 . G GCTGCCCAGGCTGGAGCCAGCC 45.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:54:1,33:0.611111:45,43,0 chr4 1093541 . C T 48.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:48:0,48:1:48,38,0 chr4 1093550 . C T 38.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:58:0,58:1:38,35,0 chr4 1093581 . C G 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:70:36,34:0.485714:47,0,57 chr4 1094113 . A G 36.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:19:12,7:0.368421:36,0,54 chr4 1096837 . G A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:41:20,21:0.512195:50,0,56 chr4 1167692 . C T 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:26:7,19:0.730769:53,0,45 chr4 1170489 . C G 45.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:74:48,26:0.351351:45,0,53 chr4 1170590 . AGAG A 56.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:54:45:14,30:0.666667:56,0,57 chr4 1171342 . G T 50.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:54:32,22:0.407407:50,0,55 chr4 1171953 . A G 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:122:0,122:1:59,47,0 chr4 1200806 . A T 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:53:0,53:1:57,56,0 chr4 1200842 . T C 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:77:51,26:0.337662:43,0,57 chr4 1309711 . C T 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:118:67,50:0.423729:49,0,50 chr4 1312011 . C T 49.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:47:25,22:0.468085:49,0,56 chr4 1312174 . T C 47.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:25:15,10:0.4:47,0,45 chr4 1315610 . C T 46.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:58:30,25:0.431034:46,0,64 chr4 1315628 . C T 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:40:21,19:0.475:45,0,70 chr4 1323541 . C T 48 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:99:63,36:0.363636:47,0,50 chr4 1336971 . T C 47.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:95:57,37:0.389474:47,0,49 chr4 1338387 . A G 58.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:45:0,45:1:58,46,0 chr4 1349617 . T C 59.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:98:0,98:1:59,42,0 chr4 1353008 . A G 57.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:34:0,34:1:57,49,0 chr4 1355241 . G A 52.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:66:0,66:1:52,41,0 chr4 1356398 . A G 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:42:0,42:1:57,45,0 chr4 1356534 . C T 43.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:16:0,16:1:43,33,0 chr4 1374887 . A G 49.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:28:0,28:1:49,39,0 chr4 1375237 . C G 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:57:0,57:1:57,41,0 chr4 1375305 . C G 52.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:50:0,50:1:52,40,0 chr4 1375306 . T G 49.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:34:52:0,52:1:49,33,0 chr4 1376180 . T C 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:69:20,49:0.710145:54,0,51 chr4 1380907 . C A 64.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:91:0,91:1:64,53,0 chr4 1380986 . C T 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:73:0,73:1:58,47,0 chr4 1381001 . A G 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:54:0,54:1:54,37,0 chr4 1383827 . A G 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:106:1,105:0.990566:58,46,0 chr4 1394795 . A G 51 PASS . GT:GQ:DP:AD:VAF:PL 1/1:35:159:5,151:0.949686:51,34,0 chr4 1394971 . C T 4.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:2:99:54,34:0.343434:0,0,2 chr4 1395135 . T C 27.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:27:121:69,52:0.429752:27,0,54 chr4 1395368 . T C 51.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:41:123:7,110:0.894309:51,41,0 chr4 1403509 . T G 41.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:6:0,6:1:41,15,0 chr4 1406384 . T C 44.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:33:19:0,19:1:44,33,0 chr4 1618138 . T C 50.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:37:0,37:1:50,37,0 chr4 1644157 . A G 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:26:13,13:0.5:48,0,53 chr4 1644290 . C G 56.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:67:0,67:1:56,45,0 chr4 1655049 . G C 57.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:71:39,32:0.450704:57,0,62 chr4 1655095 . C G 50.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:77:48,29:0.376623:50,0,61 chr4 1657401 . T C 65.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:61:82:0,82:1:65,62,0 chr4 1657435 . C T 52.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:83:48,35:0.421687:52,0,54 chr4 1668790 . G A 50.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:29:14,15:0.517241:50,0,58 chr4 1711859 . G A 43.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:30:11:2,9:0.818182:43,0,29 chr4 1727698 . C G 45.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:16,11:0.407407:45,0,67 chr4 1728037 . ACAAAGCGGAGACTCCGCACGGAGCCGAGGAAGAATG A 8.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:86:41,45:0.523256:8,0,57 chr4 1728488 . C G 45.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:87:53,34:0.390805:45,0,50 chr4 1728527 . A G 49.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:87:55,32:0.367816:49,0,66 chr4 1728572 . A G 59.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:59:102:63,39:0.382353:59,0,67 chr4 1730968 . G C 50.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:96:43,53:0.552083:50,0,45 chr4 1735344 . C A 39.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:64:36,28:0.4375:39,0,52 chr4 1735858 . T C 57.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:56:21:10,11:0.52381:57,0,61 chr4 1739806 . CCGTCCCCATCCCCCTCGCCATCCT C 23.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:67:35,32:0.477612:23,0,60 chr4 1740013 . G A 48.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:112:64,48:0.428571:48,0,55 chr4 1804313 . C T 48.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:53:28,25:0.471698:48,0,53 chr4 1806167 . G A 52.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:47:24,22:0.468085:52,0,46 chr4 1815655 . G A 40.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:75:44,31:0.413333:40,0,55 chr4 1816867 . C T 42.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:61:35,26:0.42623:42,0,51 chr4 1822997 . C T 53.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:45:19,26:0.577778:53,0,53 chr4 1832695 . C A 29.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:29:9:6,3:0.333333:29,0,47 chr4 1836471 . G A 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:207:109,97:0.468599:51,0,54 chr4 1899382 . G A 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:44:21,23:0.522727:47,0,54 chr4 1953218 . A G 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:57:0,57:1:55,46,0 chr4 1989696 . G A 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:49:42:25,17:0.404762:49,0,57 chr4 2036703 . C T 51.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:133:68,65:0.488722:51,0,55 chr4 2040967 . C G 38.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:39:22:13,9:0.409091:38,0,52 chr4 2041924 . G A 46.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:30:16,14:0.466667:46,0,55 chr4 2042401 . C T 29.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:9:9:1,8:0.888889:28,0,8 chr4 2174779 . C T 50 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:27:12,15:0.555556:50,0,46 chr4 2271138 . G A 42.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:17:9,8:0.470588:42,0,59 chr4 2271166 . G A 41 PASS . GT:GQ:DP:AD:VAF:PL 0/1:41:32:13,18:0.5625:40,0,53 chr4 2273991 . G A 42.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:77:47,30:0.38961:42,0,56 chr4 2274108 . G A 51.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:232:124,108:0.465517:51,0,49 chr4 2287389 . G C 54.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:34:19,15:0.441176:54,0,60 chr4 2287390 . C T 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:34:19,15:0.441176:52,0,60 chr4 2287620 . C G 42.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:48:29,19:0.395833:42,0,58 chr4 2292851 . G A 47.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:56:26,30:0.535714:47,0,50 chr4 2304269 . T C 53.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:31:16,15:0.483871:53,0,62 chr4 2304326 . A G 51.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:75:41,34:0.453333:51,0,65 chr4 2304969 . G T 49.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:49:23,26:0.530612:49,0,53 chr4 2320127 . C A 50.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:62:28,34:0.548387:50,0,48 chr4 2330955 . G C 47.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:46:145:74,70:0.482759:47,0,52 chr4 2331072 . C T 53.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:49:0,49:1:53,37,0 chr4 2339410 . C T 5.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:5:13:11,2:0.153846:3,0,42 chr4 2339467 . T C 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:59:0,59:1:6